Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035247.01.T01 | XP_003602845.1 | 78.261 | 138 | 26 | 2 | 1 | 136 | 1 | 136 | 1.66E-65 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035247.01.T01 | Q41001 | 78.862 | 123 | 24 | 2 | 1 | 121 | 1 | 123 | 5.53E-63 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035247.01.T01 | G7J401 | 78.261 | 138 | 26 | 2 | 1 | 136 | 1 | 136 | 7.91e-66 | 209 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0680035247.01 | MsG0680031473.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035247.01.T01 | MTR_3g099570 | 78.261 | 138 | 26 | 2 | 1 | 136 | 1 | 136 | 2.01e-69 | 209 |
| MsG0680035247.01.T01 | MTR_3g099580 | 80.992 | 121 | 23 | 0 | 1 | 121 | 1 | 121 | 1.12e-67 | 204 |
| MsG0680035247.01.T01 | MTR_3g099680 | 78.049 | 123 | 25 | 2 | 1 | 121 | 1 | 123 | 7.42e-61 | 188 |
| MsG0680035247.01.T01 | MTR_3g099980 | 78.689 | 122 | 24 | 2 | 1 | 120 | 1 | 122 | 2.44e-60 | 187 |
| MsG0680035247.01.T01 | MTR_3g099540 | 66.412 | 131 | 43 | 1 | 1 | 130 | 1 | 131 | 1.76e-53 | 166 |
| MsG0680035247.01.T01 | MTR_8g007020 | 49.306 | 144 | 59 | 4 | 4 | 134 | 2 | 144 | 1.03e-35 | 123 |
| MsG0680035247.01.T01 | MTR_8g007035 | 50.820 | 122 | 57 | 2 | 5 | 123 | 2 | 123 | 1.08e-35 | 124 |
| MsG0680035247.01.T01 | MTR_1g090190 | 38.462 | 130 | 78 | 2 | 23 | 152 | 20 | 147 | 3.41e-27 | 101 |
| MsG0680035247.01.T01 | MTR_5g006040 | 42.308 | 130 | 71 | 4 | 9 | 134 | 8 | 137 | 4.66e-27 | 101 |
| MsG0680035247.01.T01 | MTR_4g114870 | 43.796 | 137 | 70 | 4 | 5 | 134 | 6 | 142 | 5.96e-26 | 102 |
| MsG0680035247.01.T01 | MTR_4g114870 | 49.000 | 100 | 46 | 2 | 26 | 120 | 191 | 290 | 1.85e-24 | 98.2 |
| MsG0680035247.01.T01 | MTR_2g088990 | 35.811 | 148 | 92 | 3 | 1 | 146 | 1 | 147 | 5.30e-24 | 94.4 |
| MsG0680035247.01.T01 | MTR_6g080660 | 44.554 | 101 | 56 | 0 | 26 | 126 | 28 | 128 | 1.35e-23 | 92.8 |
| MsG0680035247.01.T01 | MTR_0334s0010 | 40.496 | 121 | 67 | 2 | 7 | 122 | 7 | 127 | 8.31e-23 | 90.5 |
| MsG0680035247.01.T01 | MTR_1g104800 | 41.748 | 103 | 57 | 3 | 21 | 120 | 20 | 122 | 5.19e-22 | 88.2 |
| MsG0680035247.01.T01 | MTR_1g112700 | 31.250 | 160 | 96 | 4 | 10 | 161 | 11 | 164 | 6.46e-22 | 87.8 |
| MsG0680035247.01.T01 | MTR_6g023760 | 42.000 | 100 | 57 | 1 | 22 | 120 | 22 | 121 | 2.00e-20 | 84.0 |
| MsG0680035247.01.T01 | MTR_6g083240 | 35.570 | 149 | 87 | 5 | 5 | 146 | 6 | 152 | 3.38e-20 | 83.2 |
| MsG0680035247.01.T01 | MTR_1g105130 | 37.600 | 125 | 69 | 4 | 1 | 120 | 1 | 121 | 8.56e-20 | 81.6 |
| MsG0680035247.01.T01 | MTR_1g105120 | 37.600 | 125 | 69 | 4 | 1 | 120 | 1 | 121 | 8.56e-20 | 81.6 |
| MsG0680035247.01.T01 | MTR_2g043730 | 43.137 | 102 | 54 | 3 | 21 | 121 | 27 | 125 | 9.75e-20 | 80.5 |
| MsG0680035247.01.T01 | MTR_7g086140 | 39.167 | 120 | 68 | 3 | 9 | 123 | 6 | 125 | 1.43e-19 | 81.3 |
| MsG0680035247.01.T01 | MTR_7g086190 | 39.167 | 120 | 68 | 3 | 9 | 123 | 6 | 125 | 1.43e-19 | 81.3 |
| MsG0680035247.01.T01 | MTR_4g067200 | 36.508 | 126 | 73 | 3 | 6 | 124 | 8 | 133 | 5.55e-19 | 79.7 |
| MsG0680035247.01.T01 | MTR_4g066110 | 36.508 | 126 | 73 | 3 | 6 | 124 | 8 | 133 | 5.55e-19 | 79.7 |
| MsG0680035247.01.T01 | MTR_8g099220 | 37.288 | 118 | 70 | 2 | 7 | 120 | 10 | 127 | 1.24e-18 | 77.8 |
| MsG0680035247.01.T01 | MTR_7g086160 | 36.975 | 119 | 73 | 2 | 7 | 123 | 8 | 126 | 1.86e-18 | 78.2 |
| MsG0680035247.01.T01 | MTR_7g086230 | 38.525 | 122 | 74 | 1 | 1 | 121 | 1 | 122 | 1.92e-18 | 78.6 |
| MsG0680035247.01.T01 | MTR_3g089035 | 45.361 | 97 | 49 | 3 | 23 | 118 | 30 | 123 | 2.04e-18 | 77.0 |
| MsG0680035247.01.T01 | MTR_7g086100 | 36.364 | 121 | 76 | 1 | 1 | 120 | 1 | 121 | 2.13e-17 | 77.0 |
| MsG0680035247.01.T01 | MTR_7g086280 | 37.705 | 122 | 75 | 1 | 1 | 121 | 1 | 122 | 2.30e-17 | 75.9 |
| MsG0680035247.01.T01 | MTR_7g086090 | 36.885 | 122 | 76 | 1 | 1 | 121 | 1 | 122 | 2.54e-17 | 77.0 |
| MsG0680035247.01.T01 | MTR_7g086220 | 37.615 | 109 | 64 | 2 | 6 | 110 | 2 | 110 | 3.38e-17 | 75.1 |
| MsG0680035247.01.T01 | MTR_4g007250 | 40.196 | 102 | 59 | 2 | 20 | 120 | 23 | 123 | 2.49e-16 | 72.8 |
| MsG0680035247.01.T01 | MTR_2g025580 | 30.894 | 123 | 83 | 1 | 1 | 121 | 2 | 124 | 1.04e-15 | 71.2 |
| MsG0680035247.01.T01 | MTR_8g089110 | 35.833 | 120 | 73 | 3 | 1 | 119 | 3 | 119 | 1.32e-15 | 69.7 |
| MsG0680035247.01.T01 | MTR_1g090420 | 30.233 | 129 | 84 | 3 | 23 | 145 | 25 | 153 | 3.31e-15 | 70.9 |
| MsG0680035247.01.T01 | MTR_2g043790 | 42.308 | 104 | 54 | 4 | 21 | 123 | 2 | 100 | 5.42e-15 | 67.4 |
| MsG0680035247.01.T01 | MTR_4g081100 | 36.290 | 124 | 72 | 3 | 4 | 120 | 8 | 131 | 6.27e-15 | 70.1 |
| MsG0680035247.01.T01 | MTR_2g083250 | 39.623 | 106 | 57 | 2 | 28 | 126 | 28 | 133 | 7.24e-15 | 70.9 |
| MsG0680035247.01.T01 | MTR_4g130800 | 33.071 | 127 | 78 | 4 | 1 | 120 | 3 | 129 | 3.49e-14 | 68.9 |
| MsG0680035247.01.T01 | MTR_8g088830 | 38.776 | 98 | 55 | 4 | 23 | 118 | 25 | 119 | 1.47e-13 | 64.3 |
| MsG0680035247.01.T01 | MTR_2g101300 | 34.307 | 137 | 78 | 4 | 15 | 140 | 11 | 146 | 2.58e-13 | 65.5 |
| MsG0680035247.01.T01 | MTR_8g463180 | 33.083 | 133 | 82 | 4 | 11 | 139 | 8 | 137 | 3.50e-13 | 66.6 |
| MsG0680035247.01.T01 | MTR_6g013420 | 34.848 | 132 | 77 | 6 | 7 | 134 | 20 | 146 | 1.08e-12 | 63.5 |
| MsG0680035247.01.T01 | MTR_4g130800 | 38.272 | 81 | 49 | 1 | 41 | 120 | 48 | 128 | 1.42e-12 | 64.3 |
| MsG0680035247.01.T01 | MTR_6g013200 | 33.051 | 118 | 74 | 4 | 7 | 120 | 15 | 131 | 1.78e-12 | 62.8 |
| MsG0680035247.01.T01 | MTR_8g086360 | 33.577 | 137 | 80 | 4 | 28 | 153 | 26 | 162 | 2.84e-12 | 62.4 |
| MsG0680035247.01.T01 | MTR_4g111640 | 31.148 | 122 | 72 | 4 | 10 | 120 | 11 | 131 | 3.12e-12 | 62.4 |
| MsG0680035247.01.T01 | MTR_6g022170 | 34.951 | 103 | 61 | 3 | 23 | 120 | 31 | 132 | 3.62e-12 | 61.6 |
| MsG0680035247.01.T01 | MTR_4g114830 | 37.963 | 108 | 58 | 5 | 17 | 115 | 18 | 125 | 8.18e-12 | 60.8 |
| MsG0680035247.01.T01 | MTR_2g090580 | 37.500 | 96 | 57 | 2 | 28 | 120 | 29 | 124 | 9.70e-12 | 61.2 |
| MsG0680035247.01.T01 | MTR_2g090575 | 37.500 | 96 | 57 | 2 | 28 | 120 | 27 | 122 | 1.28e-11 | 62.4 |
| MsG0680035247.01.T01 | MTR_1g014120 | 33.962 | 106 | 65 | 2 | 29 | 129 | 29 | 134 | 2.05e-11 | 60.1 |
| MsG0680035247.01.T01 | MTR_4g077787 | 30.159 | 126 | 80 | 3 | 2 | 120 | 7 | 131 | 3.18e-11 | 59.7 |
| MsG0680035247.01.T01 | MTR_4g130780 | 27.941 | 136 | 91 | 4 | 1 | 129 | 3 | 138 | 5.09e-11 | 58.9 |
| MsG0680035247.01.T01 | MTR_4g112310 | 33.333 | 81 | 53 | 1 | 40 | 120 | 2 | 81 | 6.28e-11 | 57.8 |
| MsG0680035247.01.T01 | MTR_8g094990 | 34.821 | 112 | 69 | 2 | 27 | 134 | 26 | 137 | 8.12e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035247.01.T01 | AT1G72230 | 48.611 | 144 | 66 | 2 | 3 | 146 | 1 | 136 | 3.85e-39 | 132 |
| MsG0680035247.01.T01 | AT1G22480 | 57.292 | 96 | 41 | 0 | 31 | 126 | 24 | 119 | 1.57e-32 | 115 |
| MsG0680035247.01.T01 | AT2G32300 | 38.415 | 164 | 93 | 3 | 1 | 163 | 1 | 157 | 1.26e-28 | 107 |
| MsG0680035247.01.T01 | AT2G32300 | 41.481 | 135 | 78 | 1 | 1 | 134 | 31 | 165 | 2.28e-28 | 107 |
| MsG0680035247.01.T01 | AT3G60270 | 47.059 | 102 | 54 | 0 | 22 | 123 | 22 | 123 | 3.37e-27 | 101 |
| MsG0680035247.01.T01 | AT5G07475 | 40.336 | 119 | 71 | 0 | 23 | 141 | 27 | 145 | 2.49e-26 | 99.8 |
| MsG0680035247.01.T01 | AT2G31050 | 40.741 | 135 | 72 | 4 | 3 | 133 | 10 | 140 | 3.39e-24 | 94.4 |
| MsG0680035247.01.T01 | AT2G44790 | 51.613 | 93 | 43 | 1 | 34 | 124 | 36 | 128 | 1.81e-23 | 92.4 |
| MsG0680035247.01.T01 | AT2G26720 | 44.231 | 104 | 56 | 2 | 23 | 124 | 26 | 129 | 1.89e-23 | 92.4 |
| MsG0680035247.01.T01 | AT3G27200 | 37.190 | 121 | 75 | 1 | 1 | 120 | 1 | 121 | 4.15e-23 | 90.9 |
| MsG0680035247.01.T01 | AT5G26330 | 36.970 | 165 | 93 | 5 | 23 | 176 | 21 | 185 | 2.14e-22 | 89.4 |
| MsG0680035247.01.T01 | AT3G60280 | 43.137 | 102 | 58 | 0 | 22 | 123 | 20 | 121 | 5.65e-21 | 86.3 |
| MsG0680035247.01.T01 | AT3G17675 | 35.833 | 120 | 75 | 2 | 3 | 120 | 8 | 127 | 2.81e-20 | 82.0 |
| MsG0680035247.01.T01 | AT5G20230 | 37.398 | 123 | 63 | 3 | 26 | 134 | 25 | 147 | 2.26e-15 | 70.9 |
| MsG0680035247.01.T01 | AT5G15350 | 37.288 | 118 | 71 | 3 | 6 | 121 | 10 | 126 | 3.68e-15 | 70.1 |
| MsG0680035247.01.T01 | AT4G12880 | 35.484 | 124 | 75 | 4 | 1 | 121 | 5 | 126 | 7.75e-15 | 68.2 |
| MsG0680035247.01.T01 | AT4G27520 | 32.812 | 128 | 78 | 3 | 1 | 120 | 1 | 128 | 4.50e-14 | 69.3 |
| MsG0680035247.01.T01 | AT1G64640 | 35.537 | 121 | 73 | 3 | 23 | 139 | 30 | 149 | 9.08e-14 | 66.6 |
| MsG0680035247.01.T01 | AT2G25060 | 39.167 | 120 | 66 | 5 | 27 | 139 | 32 | 151 | 1.39e-13 | 65.9 |
| MsG0680035247.01.T01 | AT5G53870 | 31.126 | 151 | 87 | 4 | 2 | 140 | 3 | 148 | 1.68e-13 | 67.8 |
| MsG0680035247.01.T01 | AT5G53870 | 31.126 | 151 | 87 | 4 | 2 | 140 | 3 | 148 | 2.28e-13 | 67.4 |
| MsG0680035247.01.T01 | AT4G31840 | 34.014 | 147 | 83 | 7 | 4 | 139 | 3 | 146 | 2.52e-13 | 65.1 |
| MsG0680035247.01.T01 | AT3G18590 | 34.711 | 121 | 65 | 3 | 13 | 120 | 7 | 126 | 3.60e-13 | 65.1 |
| MsG0680035247.01.T01 | AT1G45063 | 36.522 | 115 | 63 | 5 | 25 | 133 | 148 | 258 | 1.03e-12 | 65.1 |
| MsG0680035247.01.T01 | AT1G45063 | 35.294 | 119 | 67 | 5 | 25 | 137 | 148 | 262 | 1.23e-12 | 65.5 |
| MsG0680035247.01.T01 | AT4G28365 | 36.458 | 96 | 58 | 2 | 28 | 120 | 31 | 126 | 1.25e-12 | 63.5 |
| MsG0680035247.01.T01 | AT3G53330 | 30.159 | 126 | 84 | 3 | 22 | 143 | 184 | 309 | 4.56e-12 | 63.5 |
| MsG0680035247.01.T01 | AT2G02850 | 38.144 | 97 | 56 | 3 | 23 | 118 | 33 | 126 | 7.19e-12 | 60.1 |
| MsG0680035247.01.T01 | AT2G27035 | 28.125 | 128 | 88 | 4 | 6 | 130 | 8 | 134 | 1.24e-11 | 60.5 |
| MsG0680035247.01.T01 | AT5G14345 | 30.469 | 128 | 80 | 3 | 12 | 131 | 2 | 128 | 1.29e-11 | 60.1 |
| MsG0680035247.01.T01 | AT4G30590 | 27.869 | 122 | 83 | 2 | 7 | 123 | 10 | 131 | 1.53e-11 | 60.5 |
| MsG0680035247.01.T01 | AT3G20570 | 33.613 | 119 | 72 | 3 | 8 | 122 | 15 | 130 | 2.08e-11 | 60.5 |
| MsG0680035247.01.T01 | AT4G01380 | 27.642 | 123 | 79 | 4 | 31 | 145 | 77 | 197 | 7.00e-11 | 59.3 |
Find 38 sgRNAs with CRISPR-Local
Find 48 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATGACAGTGTTCAATTA+TGG | 0.235040 | 6:-101032259 | MsG0680035247.01.T01:intron |
| ACAGTGTTCAATTATGGAAT+TGG | 0.298388 | 6:-101032253 | MsG0680035247.01.T01:intron |
| TACTTCATATGCGCTGTTCC+TGG | 0.318286 | 6:-101032115 | MsG0680035247.01.T01:CDS |
| GCTCCTTCTGCAACACCATC+AGG | 0.341751 | 6:-101032034 | MsG0680035247.01.T01:CDS |
| AATGACAAAACCTTTGTAGT+TGG | 0.413140 | 6:-101032430 | MsG0680035247.01.T01:CDS |
| CAGTGTTCAATTATGGAATT+GGG | 0.428478 | 6:-101032252 | MsG0680035247.01.T01:CDS |
| GTGGAATGTGTGGTAGTTGT+TGG | 0.433479 | 6:+101031990 | None:intergenic |
| CACACCGTTGGAGATACTTC+AGG | 0.449866 | 6:-101032487 | MsG0680035247.01.T01:CDS |
| TGGCATGAAACTCTCTGTTA+AGG | 0.450378 | 6:-101032080 | MsG0680035247.01.T01:CDS |
| GATACTTCAGGTTGGACAAT+CGG | 0.457701 | 6:-101032475 | MsG0680035247.01.T01:CDS |
| TGTGTGGTAGTTGTTGGGCA+AGG | 0.459616 | 6:+101031996 | None:intergenic |
| GGTAGGAGTGGTGGTGGTCG+TGG | 0.462242 | 6:+101031971 | None:intergenic |
| TTTGCAACTGTCCACACCGT+TGG | 0.509170 | 6:-101032499 | MsG0680035247.01.T01:CDS |
| TTTGTAGTTGGAGACAGTCT+TGG | 0.511925 | 6:-101032418 | MsG0680035247.01.T01:intron |
| ACACCATCAGGGAAAGTTGA+TGG | 0.512811 | 6:-101032022 | MsG0680035247.01.T01:CDS |
| TTCCCTGATGGTGTTGCAGA+AGG | 0.516823 | 6:+101032031 | None:intergenic |
| TGGAATGTGTGGTAGTTGTT+GGG | 0.519162 | 6:+101031991 | None:intergenic |
| GAAGTTGCACTTTGCGTGGT+AGG | 0.529660 | 6:+101031954 | None:intergenic |
| GTTCCTGGACATTGCGTATG+TGG | 0.535150 | 6:-101032100 | MsG0680035247.01.T01:CDS |
| ATGCCACATACGCAATGTCC+AGG | 0.545019 | 6:+101032097 | None:intergenic |
| GTGTGGACAGTTGCAAAAGT+TGG | 0.551081 | 6:+101032505 | None:intergenic |
| AGCTGAAGTTGCACTTTGCG+TGG | 0.552340 | 6:+101031950 | None:intergenic |
| GTGTGGTAGTTGTTGGGCAA+GGG | 0.559907 | 6:+101031997 | None:intergenic |
| CTCCTTCTGCAACACCATCA+GGG | 0.584013 | 6:-101032033 | MsG0680035247.01.T01:CDS |
| GTGCCATCAACTTTCCCTGA+TGG | 0.588940 | 6:+101032019 | None:intergenic |
| TCGGTTCTGATTATAGCACA+TGG | 0.592715 | 6:-101032456 | MsG0680035247.01.T01:CDS |
| CAATTATGGAATTGGGCACA+CGG | 0.595099 | 6:-101032245 | MsG0680035247.01.T01:CDS |
| TGCACTTTGCGTGGTAGGAG+TGG | 0.601900 | 6:+101031959 | None:intergenic |
| GGTGGTGGTCGTGGAATGTG+TGG | 0.616937 | 6:+101031980 | None:intergenic |
| TTGCGTGGTAGGAGTGGTGG+TGG | 0.624187 | 6:+101031965 | None:intergenic |
| AAGACTGTCTCCAACTACAA+AGG | 0.647672 | 6:+101032420 | None:intergenic |
| CCAACCTGAAGTATCTCCAA+CGG | 0.658901 | 6:+101032483 | None:intergenic |
| CCGTTGGAGATACTTCAGGT+TGG | 0.662766 | 6:-101032483 | MsG0680035247.01.T01:CDS |
| CGGTTCTGATTATAGCACAT+GGG | 0.665310 | 6:-101032455 | MsG0680035247.01.T01:CDS |
| ACTTTGCGTGGTAGGAGTGG+TGG | 0.668649 | 6:+101031962 | None:intergenic |
| CTGAAGTATCTCCAACGGTG+TGG | 0.674320 | 6:+101032488 | None:intergenic |
| TCAATTAGTACAGACAGTAG+CGG | 0.713968 | 6:-101032175 | MsG0680035247.01.T01:CDS |
| TTATGGAATTGGGCACACGG+TGG | 0.751270 | 6:-101032242 | MsG0680035247.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACATTAGTTTTTTAAATTA+TGG | + | Chr6:101032168-101032187 | None:intergenic | 10.0% |
| ! | ATTATGACAGTGTTCAATTA+TGG | - | Chr6:101032201-101032220 | MsG0680035247.01.T01:CDS | 25.0% |
| ! | GTGAAAAAGAAAGCAAAAAT+TGG | + | Chr6:101032548-101032567 | None:intergenic | 25.0% |
| AATGACAAAACCTTTGTAGT+TGG | - | Chr6:101032030-101032049 | MsG0680035247.01.T01:CDS | 30.0% | |
| ACAGTGTTCAATTATGGAAT+TGG | - | Chr6:101032207-101032226 | MsG0680035247.01.T01:CDS | 30.0% | |
| CAGTGTTCAATTATGGAATT+GGG | - | Chr6:101032208-101032227 | MsG0680035247.01.T01:CDS | 30.0% | |
| !! | CTTTCTTTTTCACAGTTTCA+TGG | - | Chr6:101032555-101032574 | MsG0680035247.01.T01:CDS | 30.0% |
| CATAGTGATCGCTAAAAAGA+AGG | + | Chr6:101031929-101031948 | None:intergenic | 35.0% | |
| TCAATTAGTACAGACAGTAG+CGG | - | Chr6:101032285-101032304 | MsG0680035247.01.T01:intron | 35.0% | |
| !! | CTTCTTTTTAGCGATCACTA+TGG | - | Chr6:101031927-101031946 | MsG0680035247.01.T01:CDS | 35.0% |
| !!! | TTTTTTGAAGGGAATGGTTG+TGG | + | Chr6:101032313-101032332 | None:intergenic | 35.0% |
| AAGACTGTCTCCAACTACAA+AGG | + | Chr6:101032043-101032062 | None:intergenic | 40.0% | |
| ACCATTCCCTTCAAAAAAGC+AGG | - | Chr6:101032315-101032334 | MsG0680035247.01.T01:intron | 40.0% | |
| CAATTATGGAATTGGGCACA+CGG | - | Chr6:101032215-101032234 | MsG0680035247.01.T01:CDS | 40.0% | |
| TGGAATGTGTGGTAGTTGTT+GGG | + | Chr6:101032472-101032491 | None:intergenic | 40.0% | |
| TGGCATGAAACTCTCTGTTA+AGG | - | Chr6:101032380-101032399 | MsG0680035247.01.T01:intron | 40.0% | |
| TTTGTAGTTGGAGACAGTCT+TGG | - | Chr6:101032042-101032061 | MsG0680035247.01.T01:CDS | 40.0% | |
| ! | CGGTTCTGATTATAGCACAT+GGG | - | Chr6:101032005-101032024 | MsG0680035247.01.T01:CDS | 40.0% |
| ! | TCGGTTCTGATTATAGCACA+TGG | - | Chr6:101032004-101032023 | MsG0680035247.01.T01:CDS | 40.0% |
| !! | GATACTTCAGGTTGGACAAT+CGG | - | Chr6:101031985-101032004 | MsG0680035247.01.T01:CDS | 40.0% |
| !!! | ATGCGTTCCTGCTTTTTTGA+AGG | + | Chr6:101032325-101032344 | None:intergenic | 40.0% |
| !!! | TCCTGCTTTTTTGAAGGGAA+TGG | + | Chr6:101032319-101032338 | None:intergenic | 40.0% |
| !!! | TGCGTTCCTGCTTTTTTGAA+GGG | + | Chr6:101032324-101032343 | None:intergenic | 40.0% |
| ACACCATCAGGGAAAGTTGA+TGG | - | Chr6:101032438-101032457 | MsG0680035247.01.T01:CDS | 45.0% | |
| GTGGAATGTGTGGTAGTTGT+TGG | + | Chr6:101032473-101032492 | None:intergenic | 45.0% | |
| GTGTGGACAGTTGCAAAAGT+TGG | + | Chr6:101031958-101031977 | None:intergenic | 45.0% | |
| TACTTCATATGCGCTGTTCC+TGG | - | Chr6:101032345-101032364 | MsG0680035247.01.T01:intron | 45.0% | |
| ! | CCAACCTGAAGTATCTCCAA+CGG | + | Chr6:101031980-101031999 | None:intergenic | 45.0% |
| AGCTGAAGTTGCACTTTGCG+TGG | + | Chr6:101032513-101032532 | None:intergenic | 50.0% | |
| ATGCCACATACGCAATGTCC+AGG | + | Chr6:101032366-101032385 | None:intergenic | 50.0% | |
| CACACCGTTGGAGATACTTC+AGG | - | Chr6:101031973-101031992 | MsG0680035247.01.T01:CDS | 50.0% | |
| CCGTTGGAGATACTTCAGGT+TGG | - | Chr6:101031977-101031996 | MsG0680035247.01.T01:CDS | 50.0% | |
| CTCCTTCTGCAACACCATCA+GGG | - | Chr6:101032427-101032446 | MsG0680035247.01.T01:CDS | 50.0% | |
| GAAGTTGCACTTTGCGTGGT+AGG | + | Chr6:101032509-101032528 | None:intergenic | 50.0% | |
| GTGCCATCAACTTTCCCTGA+TGG | + | Chr6:101032444-101032463 | None:intergenic | 50.0% | |
| GTGTGGTAGTTGTTGGGCAA+GGG | + | Chr6:101032466-101032485 | None:intergenic | 50.0% | |
| GTTCCTGGACATTGCGTATG+TGG | - | Chr6:101032360-101032379 | MsG0680035247.01.T01:intron | 50.0% | |
| TGTGTGGTAGTTGTTGGGCA+AGG | + | Chr6:101032467-101032486 | None:intergenic | 50.0% | |
| TTATGGAATTGGGCACACGG+TGG | - | Chr6:101032218-101032237 | MsG0680035247.01.T01:CDS | 50.0% | |
| TTTGCAACTGTCCACACCGT+TGG | - | Chr6:101031961-101031980 | MsG0680035247.01.T01:CDS | 50.0% | |
| ! | CTGAAGTATCTCCAACGGTG+TGG | + | Chr6:101031975-101031994 | None:intergenic | 50.0% |
| !! | TTCCCTGATGGTGTTGCAGA+AGG | + | Chr6:101032432-101032451 | None:intergenic | 50.0% |
| ACTTTGCGTGGTAGGAGTGG+TGG | + | Chr6:101032501-101032520 | None:intergenic | 55.0% | |
| GCTCCTTCTGCAACACCATC+AGG | - | Chr6:101032426-101032445 | MsG0680035247.01.T01:CDS | 55.0% | |
| TGCACTTTGCGTGGTAGGAG+TGG | + | Chr6:101032504-101032523 | None:intergenic | 55.0% | |
| TTGCGTGGTAGGAGTGGTGG+TGG | + | Chr6:101032498-101032517 | None:intergenic | 60.0% | |
| ! | GGTGGTGGTCGTGGAATGTG+TGG | + | Chr6:101032483-101032502 | None:intergenic | 60.0% |
| !! | GGTAGGAGTGGTGGTGGTCG+TGG | + | Chr6:101032492-101032511 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 101031898 | 101032584 | 101031898 | ID=MsG0680035247.01;Name=MsG0680035247.01 |
| Chr6 | mRNA | 101031898 | 101032584 | 101031898 | ID=MsG0680035247.01.T01;Parent=MsG0680035247.01;Name=MsG0680035247.01.T01;_AED=0.14;_eAED=0.32;_QI=0|0|0|1|1|1|2|0|179 |
| Chr6 | exon | 101032419 | 101032584 | 101032419 | ID=MsG0680035247.01.T01:exon:10547;Parent=MsG0680035247.01.T01 |
| Chr6 | exon | 101031898 | 101032271 | 101031898 | ID=MsG0680035247.01.T01:exon:10546;Parent=MsG0680035247.01.T01 |
| Chr6 | CDS | 101032419 | 101032584 | 101032419 | ID=MsG0680035247.01.T01:cds;Parent=MsG0680035247.01.T01 |
| Chr6 | CDS | 101031898 | 101032271 | 101031898 | ID=MsG0680035247.01.T01:cds;Parent=MsG0680035247.01.T01 |
| Gene Sequence |
| Protein sequence |
