AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035501.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035501.01.T01 MTR_6g022860 83.486 109 8 2 150 248 410 518 8.36e-53 179
MsG0680035501.01.T01 MTR_7g037440 71.560 109 21 2 150 248 407 515 1.56e-43 154
MsG0680035501.01.T01 MTR_5g037350 80.357 56 11 0 95 150 501 556 4.24e-22 95.1
MsG0680035501.01.T01 MTR_1g090240 44.928 138 34 4 41 150 1 124 8.21e-22 94.4
MsG0680035501.01.T01 MTR_6g086840 86.000 50 7 0 101 150 8 57 1.53e-21 87.4
MsG0680035501.01.T01 MTR_2g079750 67.241 58 19 0 41 98 1 58 9.30e-20 81.6
MsG0680035501.01.T01 MTR_2g013980 58.824 68 9 1 35 102 997 1045 1.75e-16 79.0
MsG0680035501.01.T01 MTR_2g013980 86.486 37 5 0 114 150 1148 1184 4.08e-14 72.0
MsG0680035501.01.T01 MTR_3g073740 79.070 43 9 0 100 142 4 46 6.68e-14 66.2
MsG0680035501.01.T01 MTR_5g024920 64.286 56 18 1 95 150 33 86 3.19e-12 66.2
MsG0680035501.01.T01 MTR_5g031630 36.242 149 75 4 3 141 93 231 7.73e-12 65.1
MsG0680035501.01.T01 MTR_1g090220 65.217 46 16 0 95 140 132 177 8.42e-12 62.4
MsG0680035501.01.T01 MTR_5g083890 69.565 46 14 0 44 89 445 490 1.25e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035501.01.T01 AT3G27300 72.477 109 20 2 150 248 408 516 1.72e-45 159
MsG0680035501.01.T01 AT3G27300 72.477 109 20 2 150 248 408 516 1.72e-45 159
MsG0680035501.01.T01 AT3G27300 72.477 109 20 2 150 248 408 516 1.72e-45 159
MsG0680035501.01.T01 AT3G27300 72.477 109 20 2 150 248 462 570 2.80e-45 159
MsG0680035501.01.T01 AT3G27300 72.477 109 20 2 150 248 479 587 4.63e-45 159
MsG0680035501.01.T01 AT5G40760 73.394 109 19 2 150 248 407 515 2.69e-44 156
MsG0680035501.01.T01 AT5G40760 73.394 109 19 2 150 248 407 515 2.69e-44 156

Find 76 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTCGAGGGAGGAGTTAAA+TGG 0.244330 6:-106887239 MsG0680035501.01.T01:CDS
GTTACACAGTTTAAATATCT+TGG 0.292128 6:-106887077 MsG0680035501.01.T01:CDS
CAATGAGTTGGATCCAAATA+TGG 0.319493 6:-106886576 MsG0680035501.01.T01:intron
TTCAAACACATGGTTACATT+TGG 0.324802 6:-106885436 MsG0680035501.01.T01:CDS
TAGAAGCAAGACGGAGTATA+TGG 0.338097 6:-106887171 MsG0680035501.01.T01:CDS
AAGTCAATCCCTTACAAATC+TGG 0.352303 6:-106885509 MsG0680035501.01.T01:CDS
AACCATTAGAAAAGATTTAG+AGG 0.369865 6:-106886600 MsG0680035501.01.T01:CDS
ATCTTGTATGCAGGCATCTT+GGG 0.370705 6:-106885575 MsG0680035501.01.T01:intron
AGCAATTCATCAGCTTGTTT+AGG 0.379572 6:+106885476 None:intergenic
TCTTCTGATTGCAAAAGAAA+TGG 0.379796 6:-106885210 MsG0680035501.01.T01:three_prime_UTR
TAAACAAGCTGATGAATTGC+TGG 0.386263 6:-106885474 MsG0680035501.01.T01:CDS
TAAACTTGAGAAGATTATCT+TGG 0.387671 6:-106885324 MsG0680035501.01.T01:three_prime_UTR
CCTCTACTTCCAGATTTGTA+AGG 0.401606 6:+106885500 None:intergenic
TATCTTGTATGCAGGCATCT+TGG 0.407581 6:-106885576 MsG0680035501.01.T01:intron
AGATCAAATGGAGGAGAGTC+AGG 0.409734 6:-106886663 MsG0680035501.01.T01:CDS
TTACACAGTTTAAATATCTT+GGG 0.419198 6:-106887076 MsG0680035501.01.T01:CDS
TCTTCTTACAACGGCATCTA+CGG 0.424045 6:+106886688 None:intergenic
TCGGTGCCTTCATACGTTAC+CGG 0.424785 6:-106885390 MsG0680035501.01.T01:three_prime_UTR
TTCAAGCTGGGTGGTTGAAA+TGG 0.430779 6:-106887004 MsG0680035501.01.T01:CDS
AGTCGAGGGAGGAGTTAAAT+GGG 0.432588 6:-106887238 MsG0680035501.01.T01:CDS
GGAGTTAAATGGGAGGCTCC+TGG 0.434267 6:-106887228 MsG0680035501.01.T01:CDS
ATGCCAGTGGTTGGTTCACT+TGG 0.440053 6:-106885250 MsG0680035501.01.T01:three_prime_UTR
AGTCAGGTTAAAAGAGGTAG+AGG 0.455911 6:-106886647 MsG0680035501.01.T01:CDS
GCAGGTCAAGCAACCAGGAC+TGG 0.458318 6:-106886259 MsG0680035501.01.T01:intron
AAGGAGAAGTGGGTCTACTT+TGG 0.464502 6:-106887132 MsG0680035501.01.T01:CDS
TGGAATGTAACTTCAGCAAA+AGG 0.477076 6:-106887151 MsG0680035501.01.T01:CDS
TCTACTTTGGAGGTGAAAGT+TGG 0.480804 6:-106887119 MsG0680035501.01.T01:CDS
ACTTCTGCACAGAATCGATA+AGG 0.482413 6:-106885540 MsG0680035501.01.T01:CDS
TGTAAGAAGAGTAGATCAAA+TGG 0.483895 6:-106886675 MsG0680035501.01.T01:CDS
TTCAAATAGAGATTATGTAA+TGG 0.487352 6:-106885155 MsG0680035501.01.T01:three_prime_UTR
GCAGATGATGTAGTCTTGCT+TGG 0.487670 6:-106887263 MsG0680035501.01.T01:CDS
ACTGTTGACATCTCCAGTCC+TGG 0.503814 6:+106886246 None:intergenic
GATATTTAAACTGTGTAACC+TGG 0.505126 6:+106887081 None:intergenic
AGATTTAGAGGTCAATGAGT+TGG 0.506040 6:-106886588 MsG0680035501.01.T01:CDS
CTCTACTTCCAGATTTGTAA+GGG 0.516833 6:+106885501 None:intergenic
GAGGAGAGTCAGGTTAAAAG+AGG 0.517218 6:-106886653 MsG0680035501.01.T01:CDS
TCAAAATAAATGCCAGTGGT+TGG 0.519421 6:-106885259 MsG0680035501.01.T01:three_prime_UTR
GAGAAGTGGGTCTACTTTGG+AGG 0.519938 6:-106887129 MsG0680035501.01.T01:CDS
ATGAGACGCTCATAGGCCTC+TGG 0.521184 6:+106886171 None:intergenic
TAGTCTTGCTTGGTGAGTCG+AGG 0.531378 6:-106887253 MsG0680035501.01.T01:CDS
AGTAAGCCGGTAACGTATGA+AGG 0.535752 6:+106885384 None:intergenic
ACTCCGTCTTGCTTCTACTC+AGG 0.536326 6:+106887177 None:intergenic
CTCGTGCAGGTCAAGCAACC+AGG 0.536783 6:-106886264 MsG0680035501.01.T01:intron
CTTCTGCACAGAATCGATAA+GGG 0.538831 6:-106885539 MsG0680035501.01.T01:CDS
CTTCTTACAACGGCATCTAC+GGG 0.551114 6:+106886689 None:intergenic
GTACATCATCGTATTCAAGC+TGG 0.551451 6:-106887017 MsG0680035501.01.T01:CDS
ATATTTAAACTGTGTAACCT+GGG 0.551646 6:+106887082 None:intergenic
TTGAAATGGAGAAGAGCCTC+AGG 0.558437 6:-106886990 MsG0680035501.01.T01:intron
CCTTACAAATCTGGAAGTAG+AGG 0.560790 6:-106885500 MsG0680035501.01.T01:CDS
AACTTCAGCAAAAGGAGAAG+TGG 0.560855 6:-106887143 MsG0680035501.01.T01:CDS
TACATCATCGTATTCAAGCT+GGG 0.565675 6:-106887016 MsG0680035501.01.T01:CDS
TGGAGATCATATCATACCCC+AGG 0.566113 6:-106887099 MsG0680035501.01.T01:CDS
AATCCTCTTCATGAGTAAGC+CGG 0.566143 6:+106885371 None:intergenic
ACGCTTCTAAGCTTGCCTCC+AGG 0.567288 6:+106887210 None:intergenic
AAGAAGAGTAGATCAAATGG+AGG 0.572060 6:-106886672 MsG0680035501.01.T01:CDS
TTGATCTACTCTTCTTACAA+CGG 0.585966 6:+106886679 None:intergenic
GTCAAGAATGAGACGCTCAT+AGG 0.586241 6:+106886164 None:intergenic
GAGGCAAGCTTAGAAGCGTA+TGG 0.588269 6:-106887206 MsG0680035501.01.T01:CDS
TTACCGGCTTACTCATGAAG+AGG 0.593730 6:-106885374 MsG0680035501.01.T01:three_prime_UTR
ACTTCAGCAAAAGGAGAAGT+GGG 0.597037 6:-106887142 MsG0680035501.01.T01:CDS
AGTCTTGCTTGGTGAGTCGA+GGG 0.599788 6:-106887252 MsG0680035501.01.T01:CDS
CCGTCTTGCTTCTACTCAGG+CGG 0.600460 6:+106887180 None:intergenic
CATCGCAGTAAAATTTAACA+AGG 0.605839 6:+106885100 None:intergenic
CCTCTGGAATGGTTACATCA+TGG 0.606696 6:+106886187 None:intergenic
TTATCGATTCTGTGCAGAAG+TGG 0.610171 6:+106885542 None:intergenic
ACGCTCATAGGCCTCTGGAA+TGG 0.615396 6:+106886176 None:intergenic
GCTGGATATGTTCAAACACA+TGG 0.621030 6:-106885446 MsG0680035501.01.T01:CDS
GCTTTCAAAATAAATGCCAG+TGG 0.638661 6:-106885263 MsG0680035501.01.T01:three_prime_UTR
AAACCAAGTGAACCAACCAC+TGG 0.639402 6:+106885247 None:intergenic
CTTGCTTGGTGAGTCGAGGG+AGG 0.647368 6:-106887249 MsG0680035501.01.T01:CDS
CCGCCTGAGTAGAAGCAAGA+CGG 0.650999 6:-106887180 MsG0680035501.01.T01:CDS
CGAGGGAGGAGTTAAATGGG+AGG 0.674766 6:-106887235 MsG0680035501.01.T01:CDS
CCATGATGTAACCATTCCAG+AGG 0.683996 6:-106886187 MsG0680035501.01.T01:CDS
TATTTAAACTGTGTAACCTG+GGG 0.704430 6:+106887083 None:intergenic
GTTAAATGGGAGGCTCCTGG+AGG 0.712431 6:-106887225 MsG0680035501.01.T01:CDS
ATCATCGTATTCAAGCTGGG+TGG 0.749283 6:-106887013 MsG0680035501.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATAGTAATGAAAAT+TGG - Chr6:106886610-106886629 MsG0680035501.01.T01:CDS 10.0%
!! TAAGTTAGAATCAATTATAT+AGG + Chr6:106886399-106886418 None:intergenic 15.0%
!!! AAATTTTGTTTAAACACATT+TGG - Chr6:106885916-106885935 MsG0680035501.01.T01:intron 15.0%
!!! ATTGATTCTAACTTAAAATT+AGG - Chr6:106886404-106886423 MsG0680035501.01.T01:intron 15.0%
!! AAAAGTTAATAGTGAGTTTA+TGG + Chr6:106886531-106886550 None:intergenic 20.0%
!! TTACACAGTTTAAATATCTT+GGG - Chr6:106885265-106885284 MsG0680035501.01.T01:three_prime_UTR 20.0%
!! TTCAAATAGAGATTATGTAA+TGG - Chr6:106887186-106887205 MsG0680035501.01.T01:CDS 20.0%
!! TTTGAAAAACTATACAAAAG+AGG + Chr6:106887172-106887191 None:intergenic 20.0%
!!! AATATATTTTGCAGAATTAG+AGG - Chr6:106886633-106886652 MsG0680035501.01.T01:CDS 20.0%
! AACCATTAGAAAAGATTTAG+AGG - Chr6:106885741-106885760 MsG0680035501.01.T01:intron 25.0%
! ATATTTAAACTGTGTAACCT+GGG + Chr6:106885262-106885281 None:intergenic 25.0%
! GTTACACAGTTTAAATATCT+TGG - Chr6:106885264-106885283 MsG0680035501.01.T01:three_prime_UTR 25.0%
! GTTCTATCAAAAACCATATT+TGG + Chr6:106885781-106885800 None:intergenic 25.0%
! TAAACTTGAGAAGATTATCT+TGG - Chr6:106887017-106887036 MsG0680035501.01.T01:CDS 25.0%
! TAGGCAAAATCAATTCTAAT+CGG + Chr6:106886380-106886399 None:intergenic 25.0%
! TTCATTTGTTTGCAAGAAAA+TGG - Chr6:106886583-106886602 MsG0680035501.01.T01:CDS 25.0%
!! TTGTATTTTATCTTGTATGC+AGG - Chr6:106886757-106886776 MsG0680035501.01.T01:intron 25.0%
!!! GTAAACAGTTTTGTTATGTT+TGG - Chr6:106886348-106886367 MsG0680035501.01.T01:intron 25.0%
!!! TAGAAAAGTTGGTAGAAATT+AGG - Chr6:106885599-106885618 MsG0680035501.01.T01:intron 25.0%
AAGACTAGAAAGGATAGATT+AGG - Chr6:106885536-106885555 MsG0680035501.01.T01:CDS 30.0%
AAGCAACAAAAACATGAACT+AGG + Chr6:106886218-106886237 None:intergenic 30.0%
ACTGATTGTTAAGATGTGTT+TGG + Chr6:106886564-106886583 None:intergenic 30.0%
AGTGTAGAAAACATGTTTAG+AGG + Chr6:106886444-106886463 None:intergenic 30.0%
ATTCATAGATTATTGCGACA+CGG - Chr6:106886714-106886733 MsG0680035501.01.T01:intron 30.0%
CATCGCAGTAAAATTTAACA+AGG + Chr6:106887244-106887263 None:intergenic 30.0%
CTCCTACTTTGTAGAAAAAT+CGG - Chr6:106886932-106886951 MsG0680035501.01.T01:intron 30.0%
GATATTTAAACTGTGTAACC+TGG + Chr6:106885263-106885282 None:intergenic 30.0%
TATTTAAACTGTGTAACCTG+GGG + Chr6:106885261-106885280 None:intergenic 30.0%
TCTTCTGATTGCAAAAGAAA+TGG - Chr6:106887131-106887150 MsG0680035501.01.T01:CDS 30.0%
TGTAAGAAGAGTAGATCAAA+TGG - Chr6:106885666-106885685 MsG0680035501.01.T01:intron 30.0%
TTCAAACACATGGTTACATT+TGG - Chr6:106886905-106886924 MsG0680035501.01.T01:intron 30.0%
TTCGATACAATCATGAAAAG+CGG + Chr6:106886493-106886512 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG + Chr6:106885665-106885684 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG + Chr6:106885746-106885765 None:intergenic 30.0%
! GATTTTTCTACAAAGTAGGA+GGG + Chr6:106886933-106886952 None:intergenic 30.0%
! TCTACCAACTTTTCTACTAT+AGG + Chr6:106885595-106885614 None:intergenic 30.0%
! TGGTTTTTGATAGAACGTTA+TGG - Chr6:106885785-106885804 MsG0680035501.01.T01:intron 30.0%
! TTTTCTAATGGTTTCTCGAA+TGG + Chr6:106885734-106885753 None:intergenic 30.0%
!! TGTATTGATTCAGTTTAGAG+AGG - Chr6:106886307-106886326 MsG0680035501.01.T01:intron 30.0%
!! TTAAGATGTGTTTGGTTCTA+TGG + Chr6:106886556-106886575 None:intergenic 30.0%
!!! AACAGTTTTGTTATGTTTGG+AGG - Chr6:106886351-106886370 MsG0680035501.01.T01:intron 30.0%
!!! TTCTCTGTCATTTTGTACTA+TGG + Chr6:106885292-106885311 None:intergenic 30.0%
AACAAGTCTCAAGATGCTAA+AGG - Chr6:106886244-106886263 MsG0680035501.01.T01:CDS 35.0%
AAGAAGAGTAGATCAAATGG+AGG - Chr6:106885669-106885688 MsG0680035501.01.T01:intron 35.0%
AAGTCAATCCCTTACAAATC+TGG - Chr6:106886832-106886851 MsG0680035501.01.T01:intron 35.0%
ACAAGTCTCAAGATGCTAAA+GGG - Chr6:106886245-106886264 MsG0680035501.01.T01:CDS 35.0%
AGATTTAGAGGTCAATGAGT+TGG - Chr6:106885753-106885772 MsG0680035501.01.T01:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG - Chr6:106885588-106885607 MsG0680035501.01.T01:intron 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG - Chr6:106885401-106885420 MsG0680035501.01.T01:exon 35.0%
ATCATGAAAAGCGGTAAAAG+TGG + Chr6:106886484-106886503 None:intergenic 35.0%
ATCTTACCTTTAACTCGTCT+CGG + Chr6:106886680-106886699 None:intergenic 35.0%
ATTTGATTCCAAACAGTGTC+CGG + Chr6:106885900-106885919 None:intergenic 35.0%
CATTTCAATTCATCATGCTC+TGG - Chr6:106885995-106886014 MsG0680035501.01.T01:intron 35.0%
CTCTACTTCCAGATTTGTAA+GGG + Chr6:106886843-106886862 None:intergenic 35.0%
GAAATTAGGCTAAGATGGTT+TGG - Chr6:106885613-106885632 MsG0680035501.01.T01:intron 35.0%
GCTTTCAAAATAAATGCCAG+TGG - Chr6:106887078-106887097 MsG0680035501.01.T01:CDS 35.0%
TAAACAAGCTGATGAATTGC+TGG - Chr6:106886867-106886886 MsG0680035501.01.T01:intron 35.0%
TACATCATCGTATTCAAGCT+GGG - Chr6:106885325-106885344 MsG0680035501.01.T01:three_prime_UTR 35.0%
TCAAAATAAATGCCAGTGGT+TGG - Chr6:106887082-106887101 MsG0680035501.01.T01:CDS 35.0%
TCATGAAAAGCGGTAAAAGT+GGG + Chr6:106886483-106886502 None:intergenic 35.0%
TGGAATGTAACTTCAGCAAA+AGG - Chr6:106885190-106885209 MsG0680035501.01.T01:three_prime_UTR 35.0%
TGGTAGAAATTAGGCTAAGA+TGG - Chr6:106885608-106885627 MsG0680035501.01.T01:intron 35.0%
TGTGGAATAATCACTTGCAT+CGG - Chr6:106885872-106885891 MsG0680035501.01.T01:intron 35.0%
! AGCAATTCATCAGCTTGTTT+AGG + Chr6:106886868-106886887 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG - Chr6:106885765-106885784 MsG0680035501.01.T01:intron 35.0%
! CGATTTTTCTACAAAGTAGG+AGG + Chr6:106886934-106886953 None:intergenic 35.0%
! GTTTCTCGAATGGTTTTCTT+AGG + Chr6:106885724-106885743 None:intergenic 35.0%
!!! CACCGATTTTTCTACAAAGT+AGG + Chr6:106886937-106886956 None:intergenic 35.0%
AACTTCAGCAAAAGGAGAAG+TGG - Chr6:106885198-106885217 MsG0680035501.01.T01:three_prime_UTR 40.0%
AATCCTCTTCATGAGTAAGC+CGG + Chr6:106886973-106886992 None:intergenic 40.0%
ACCAGCAATGTTGTATGGTA+CGG - Chr6:106885435-106885454 MsG0680035501.01.T01:CDS 40.0%
ACTTCAGCAAAAGGAGAAGT+GGG - Chr6:106885199-106885218 MsG0680035501.01.T01:three_prime_UTR 40.0%
ACTTCTGCACAGAATCGATA+AGG - Chr6:106886801-106886820 MsG0680035501.01.T01:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - Chr6:106885694-106885713 MsG0680035501.01.T01:intron 40.0%
ATCTTGTATGCAGGCATCTT+GGG - Chr6:106886766-106886785 MsG0680035501.01.T01:intron 40.0%
CACTTACTTTACTCTCGTGT+TGG + Chr6:106885481-106885500 None:intergenic 40.0%
CCTCTACTTCCAGATTTGTA+AGG + Chr6:106886844-106886863 None:intergenic 40.0%
CCTTACAAATCTGGAAGTAG+AGG - Chr6:106886841-106886860 MsG0680035501.01.T01:intron 40.0%
CGAGAGTAAAGTAAGTGTAG+CGG - Chr6:106885484-106885503 MsG0680035501.01.T01:CDS 40.0%
CTTCTGCACAGAATCGATAA+GGG - Chr6:106886802-106886821 MsG0680035501.01.T01:intron 40.0%
GAACTTTCCTTTCAGCTAAG+TGG + Chr6:106885398-106885417 None:intergenic 40.0%
GATGAATTGCTGGAAAAAGC+TGG - Chr6:106886877-106886896 MsG0680035501.01.T01:intron 40.0%
GATGAGTGGTAAGACTAGAA+AGG - Chr6:106885526-106885545 MsG0680035501.01.T01:CDS 40.0%
GCTGGATATGTTCAAACACA+TGG - Chr6:106886895-106886914 MsG0680035501.01.T01:intron 40.0%
GTACATCATCGTATTCAAGC+TGG - Chr6:106885324-106885343 MsG0680035501.01.T01:three_prime_UTR 40.0%
TAGAAGCAAGACGGAGTATA+TGG - Chr6:106885170-106885189 MsG0680035501.01.T01:three_prime_UTR 40.0%
TATCTTGTATGCAGGCATCT+TGG - Chr6:106886765-106886784 MsG0680035501.01.T01:intron 40.0%
TCTTATCGCATAAACACCTG+AGG + Chr6:106885370-106885389 None:intergenic 40.0%
TCTTCTTACAACGGCATCTA+CGG + Chr6:106885656-106885675 None:intergenic 40.0%
! GGTTGTTGTTGTTGTTGTTG+TGG - Chr6:106885854-106885873 MsG0680035501.01.T01:intron 40.0%
! TCTACTTTGGAGGTGAAAGT+TGG - Chr6:106885222-106885241 MsG0680035501.01.T01:three_prime_UTR 40.0%
!! GAAAGTACCACTTAGCTGAA+AGG - Chr6:106885388-106885407 MsG0680035501.01.T01:three_prime_UTR 40.0%
!! TTATCGATTCTGTGCAGAAG+TGG + Chr6:106886802-106886821 None:intergenic 40.0%
AAACCAAGTGAACCAACCAC+TGG + Chr6:106887097-106887116 None:intergenic 45.0%
AAGGAGAAGTGGGTCTACTT+TGG - Chr6:106885209-106885228 MsG0680035501.01.T01:three_prime_UTR 45.0%
ACACCATTAGAGAGAGAGTG+GGG - Chr6:106885563-106885582 MsG0680035501.01.T01:CDS 45.0%
AGATCAAATGGAGGAGAGTC+AGG - Chr6:106885678-106885697 MsG0680035501.01.T01:intron 45.0%
AGTAAGCCGGTAACGTATGA+AGG + Chr6:106886960-106886979 None:intergenic 45.0%
AGTCGAGGGAGGAGTTAAAT+GGG - Chr6:106885103-106885122 MsG0680035501.01.T01:three_prime_UTR 45.0%
ATCATCGTATTCAAGCTGGG+TGG - Chr6:106885328-106885347 MsG0680035501.01.T01:three_prime_UTR 45.0%
CCATGATGTAACCATTCCAG+AGG - Chr6:106886154-106886173 MsG0680035501.01.T01:CDS 45.0%
CTTCTTACAACGGCATCTAC+GGG + Chr6:106885655-106885674 None:intergenic 45.0%
GACACCATTAGAGAGAGAGT+GGG - Chr6:106885562-106885581 MsG0680035501.01.T01:CDS 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - Chr6:106885688-106885707 MsG0680035501.01.T01:intron 45.0%
GTCAAGAATGAGACGCTCAT+AGG + Chr6:106886180-106886199 None:intergenic 45.0%
GTCAGACCAGCAATGTTGTA+TGG - Chr6:106885430-106885449 MsG0680035501.01.T01:CDS 45.0%
TCCGTACCATACAACATTGC+TGG + Chr6:106885439-106885458 None:intergenic 45.0%
TGACACCATTAGAGAGAGAG+TGG - Chr6:106885561-106885580 MsG0680035501.01.T01:CDS 45.0%
TGGAGATCATATCATACCCC+AGG - Chr6:106885242-106885261 MsG0680035501.01.T01:three_prime_UTR 45.0%
TGTTGTATGGTACGGAGTGT+TGG - Chr6:106885443-106885462 MsG0680035501.01.T01:CDS 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG - Chr6:106885337-106885356 MsG0680035501.01.T01:three_prime_UTR 45.0%
TTGAAATGGAGAAGAGCCTC+AGG - Chr6:106885351-106885370 MsG0680035501.01.T01:three_prime_UTR 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + Chr6:106885834-106885853 None:intergenic 45.0%
! AAGTAAGTGTAGCGGAGATG+AGG - Chr6:106885492-106885511 MsG0680035501.01.T01:CDS 45.0%
! ATAATCACTTGCATCGGTGC+CGG - Chr6:106885878-106885897 MsG0680035501.01.T01:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + Chr6:106885835-106885854 None:intergenic 45.0%
! GCAGATGATGTAGTCTTGCT+TGG - Chr6:106885078-106885097 MsG0680035501.01.T01:three_prime_UTR 45.0%
! GTTGTATGGTACGGAGTGTT+GGG - Chr6:106885444-106885463 MsG0680035501.01.T01:CDS 45.0%
!! CCTCTGGAATGGTTACATCA+TGG + Chr6:106886157-106886176 None:intergenic 45.0%
!! TTACCGGCTTACTCATGAAG+AGG - Chr6:106886967-106886986 MsG0680035501.01.T01:intron 45.0%
ACTCCGTCTTGCTTCTACTC+AGG + Chr6:106885167-106885186 None:intergenic 50.0%
ACTGTTGACATCTCCAGTCC+TGG + Chr6:106886098-106886117 None:intergenic 50.0%
ACTTGTTCGATGTCTCGTGC+AGG - Chr6:106886064-106886083 MsG0680035501.01.T01:intron 50.0%
CACCATTAGAGAGAGAGTGG+GGG - Chr6:106885564-106885583 MsG0680035501.01.T01:CDS 50.0%
CCACTTAGTGGGATAAGGCT+TGG - Chr6:106885833-106885852 MsG0680035501.01.T01:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + Chr6:106885830-106885849 None:intergenic 50.0%
GAGAAGTGGGTCTACTTTGG+AGG - Chr6:106885212-106885231 MsG0680035501.01.T01:three_prime_UTR 50.0%
GAGTCGAGGGAGGAGTTAAA+TGG - Chr6:106885102-106885121 MsG0680035501.01.T01:three_prime_UTR 50.0%
TACCCCCACTCTCTCTCTAA+TGG + Chr6:106885569-106885588 None:intergenic 50.0%
TAGCGGAGATGAGGATGTTG+CGG - Chr6:106885501-106885520 MsG0680035501.01.T01:CDS 50.0%
TGTTCGCCGAGACGAGTTAA+AGG - Chr6:106886671-106886690 MsG0680035501.01.T01:CDS 50.0%
! AGTCTTGCTTGGTGAGTCGA+GGG - Chr6:106885089-106885108 MsG0680035501.01.T01:three_prime_UTR 50.0%
! ATGCCAGTGGTTGGTTCACT+TGG - Chr6:106887091-106887110 MsG0680035501.01.T01:CDS 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + Chr6:106885836-106885855 None:intergenic 50.0%
! GAGGCAAGCTTAGAAGCGTA+TGG - Chr6:106885135-106885154 MsG0680035501.01.T01:three_prime_UTR 50.0%
! TAGTCTTGCTTGGTGAGTCG+AGG - Chr6:106885088-106885107 MsG0680035501.01.T01:three_prime_UTR 50.0%
! TCGGTGCCTTCATACGTTAC+CGG - Chr6:106886951-106886970 MsG0680035501.01.T01:intron 50.0%
ACGCTTCTAAGCTTGCCTCC+AGG + Chr6:106885134-106885153 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + Chr6:106885822-106885841 None:intergenic 55.0%
AGGATGTTGCGGTGGATGAG+TGG - Chr6:106885512-106885531 MsG0680035501.01.T01:CDS 55.0%
ATGAGACGCTCATAGGCCTC+TGG + Chr6:106886173-106886192 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - Chr6:106885821-106885840 MsG0680035501.01.T01:intron 55.0%
CCGCCTGAGTAGAAGCAAGA+CGG - Chr6:106885161-106885180 MsG0680035501.01.T01:three_prime_UTR 55.0%
CCGTCTTGCTTCTACTCAGG+CGG + Chr6:106885164-106885183 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG - Chr6:106885828-106885847 MsG0680035501.01.T01:intron 55.0%
CGAGGGAGGAGTTAAATGGG+AGG - Chr6:106885106-106885125 MsG0680035501.01.T01:three_prime_UTR 55.0%
GGAGTTAAATGGGAGGCTCC+TGG - Chr6:106885113-106885132 MsG0680035501.01.T01:three_prime_UTR 55.0%
GTTAAATGGGAGGCTCCTGG+AGG - Chr6:106885116-106885135 MsG0680035501.01.T01:three_prime_UTR 55.0%
TGTAGCCGACCCCACTTAGT+GGG - Chr6:106885822-106885841 MsG0680035501.01.T01:intron 55.0%
! ACGCTCATAGGCCTCTGGAA+TGG + Chr6:106886168-106886187 None:intergenic 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG - Chr6:106885447-106885466 MsG0680035501.01.T01:CDS 55.0%
CGGAGATGAGGATGTTGCGG+TGG - Chr6:106885504-106885523 MsG0680035501.01.T01:CDS 60.0%
CTCGTGCAGGTCAAGCAACC+AGG - Chr6:106886077-106886096 MsG0680035501.01.T01:intron 60.0%
GCAGGTCAAGCAACCAGGAC+TGG - Chr6:106886082-106886101 MsG0680035501.01.T01:intron 60.0%
! CTTGCTTGGTGAGTCGAGGG+AGG - Chr6:106885092-106885111 MsG0680035501.01.T01:three_prime_UTR 60.0%
!! CATCGGTGCCGGACACTGTT+TGG - Chr6:106885889-106885908 MsG0680035501.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 106885069 106887294 106885069 ID=MsG0680035501.01;Name=MsG0680035501.01
Chr6 mRNA 106885069 106887294 106885069 ID=MsG0680035501.01.T01;Parent=MsG0680035501.01;Name=MsG0680035501.01.T01;_AED=0.44;_eAED=0.68;_QI=0|0|0.25|1|0.66|0.75|4|349|248
Chr6 exon 106885069 106885584 106885069 ID=MsG0680035501.01.T01:exon:18836;Parent=MsG0680035501.01.T01
Chr6 exon 106886145 106886277 106886145 ID=MsG0680035501.01.T01:exon:18835;Parent=MsG0680035501.01.T01
Chr6 exon 106886577 106886719 106886577 ID=MsG0680035501.01.T01:exon:18834;Parent=MsG0680035501.01.T01
Chr6 exon 106886991 106887294 106886991 ID=MsG0680035501.01.T01:exon:18833;Parent=MsG0680035501.01.T01
Chr6 CDS 106886991 106887294 106886991 ID=MsG0680035501.01.T01:cds;Parent=MsG0680035501.01.T01
Chr6 CDS 106886577 106886719 106886577 ID=MsG0680035501.01.T01:cds;Parent=MsG0680035501.01.T01
Chr6 CDS 106886145 106886277 106886145 ID=MsG0680035501.01.T01:cds;Parent=MsG0680035501.01.T01
Chr6 CDS 106885418 106885584 106885418 ID=MsG0680035501.01.T01:cds;Parent=MsG0680035501.01.T01
Chr6 three_prime_UTR 106885069 106885417 106885069 ID=MsG0680035501.01.T01:three_prime_utr;Parent=MsG0680035501.01.T01
Gene Sequence

>MsG0680035501.01.T01

ATGCTTTTTGCAGATGATGTAGTCTTGCTTGGTGAGTCGAGGGAGGAGTTAAATGGGAGGCTCCTGGAGGCAAGCTTAGAAGCGTATGGCTTCCGCCTGAGTAGAAGCAAGACGGAGTATATGGAATGTAACTTCAGCAAAAGGAGAAGTGGGTCTACTTTGGAGGTGAAAGTTGGAGATCATATCATACCCCAGGTTACACAGTTTAAATATCTTGGGTCCATAGTACAAAATGACAGAGAAATAGAAGCTGATGTACATCATCGTATTCAAGCTGGGTGGTTGAAATGGAGAAGAGCCTCAGAGAGAAGACCCGTAGATGCCGTTGTAAGAAGAGTAGATCAAATGGAGGAGAGTCAGGTTAAAAGAGGTAGAGGAAGACCTAAGAAAACCATTCGAGAAACCATTAGAAAAGATTTAGAGGTCAATGAGTTGGATCCAAATATGGTCAAGCAACCAGGACTGGAGATGTCAACAGTTCAAAGTGAACTAGATTTGTCGTACAGACAACGCTACCATGATGTAACCATTCCAGAGGCCTATGAGCGTCTCATTCTTGACACGTATGTTACTTTTCCTAGCATCTTGGGAATCTTTACACCACTTCTGCACAGAATCGATAAGGGTGAATTCAAGTCAATCCCTTACAAATCTGGAAGTAGAGGTCCTAAACAAGCTGATGAATTGCTGGAAAAAGCTGGATATGTTCAAACACATGGTTACATTTGGATCCCTCCTACTTTGTAG
Protein sequence

>MsG0680035501.01.T01

MLFADDVVLLGESREELNGRLLEASLEAYGFRLSRSKTEYMECNFSKRRSGSTLEVKVGDHIIPQVTQFKYLGSIVQNDREIEADVHHRIQAGWLKWRRASERRPVDAVVRRVDQMEESQVKRGRGRPKKTIRETIRKDLEVNELDPNMVKQPGLEMSTVQSELDLSYRQRYHDVTIPEAYERLILDTYVTFPSILGIFTPLLHRIDKGEFKSIPYKSGSRGPKQADELLEKAGYVQTHGYIWIPPTL*