AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035617.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035617.01.T01 MTR_6g085170 75.630 238 32 1 1 212 1 238 5.06e-120 345
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035617.01.T01 AT1G43860 60.930 215 58 2 1 189 1 215 1.10e-87 263
MsG0680035617.01.T01 AT1G43860 51.323 189 57 3 27 189 1 180 3.74e-57 184

Find 154 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCGATGTAATTTCAATTTA+AGG 0.072912 6:-109407951 None:intergenic
TATATCTGCATTTGCGTATA+TGG 0.209542 6:+109407266 MsG0680035617.01.T01:three_prime_UTR
CTGCTAGGTTACACCTTGTT+TGG 0.229732 6:+109406954 MsG0680035617.01.T01:three_prime_UTR
TGTGTTGCTCAGTTATTTCA+TGG 0.236656 6:+109406239 MsG0680035617.01.T01:CDS
TAATTGATCTGATTTCTAAT+TGG 0.241382 6:+109407326 MsG0680035617.01.T01:three_prime_UTR
TGAACATCTGTGATAGTTAC+AGG 0.252968 6:+109406456 MsG0680035617.01.T01:three_prime_UTR
CATCGAACGTATTTCATTAC+TGG 0.254025 6:+109407967 MsG0680035617.01.T01:three_prime_UTR
GCACGGATTCAGAAGTTCTT+TGG 0.262575 6:-109407510 None:intergenic
ACCAGATAAAATGTGATAAA+AGG 0.264021 6:-109406582 None:intergenic
CTTTGATTCTGCTAAAATTT+CGG 0.266983 6:+109407300 MsG0680035617.01.T01:three_prime_UTR
ACCCAAAAGCTTGCCTAAAA+AGG 0.267464 6:-109406699 None:intergenic
CACGGATTCAGAAGTTCTTT+GGG 0.284543 6:-109407509 None:intergenic
ACAGGCTCTGGAGTTGATTC+AGG 0.285367 6:+109406057 MsG0680035617.01.T01:intron
CAAGACTCTCCTAACAAAAT+AGG 0.298300 6:-109407895 None:intergenic
TCATTCCAGTATTTGCTTAG+AGG 0.304623 6:+109403445 MsG0680035617.01.T01:CDS
AGGTGTTCTTGCTAAGTCTA+AGG 0.321336 6:+109403394 MsG0680035617.01.T01:CDS
ATTGGAGCCTGGTCTGTATA+AGG 0.329038 6:+109407363 MsG0680035617.01.T01:three_prime_UTR
AAAGAATTATAATTAATAAC+AGG 0.330790 6:-109407226 None:intergenic
CTTCTATTCTTAAGTTTCCT+AGG 0.338536 6:+109408151 MsG0680035617.01.T01:three_prime_UTR
AAAAGTGTTTGAGATGTTAC+TGG 0.342230 6:+109407835 MsG0680035617.01.T01:three_prime_UTR
ACCCTAACACCGTTCTTTCA+TGG 0.342417 6:+109403221 MsG0680035617.01.T01:CDS
GTTGGATAAAATGTGGTAAA+AGG 0.344779 6:-109406502 None:intergenic
CAGGGTTACAGAGAATAAAA+TGG 0.344846 6:-109406264 None:intergenic
ACAGCGCGCAAATGAGTATT+TGG 0.353317 6:-109407036 None:intergenic
CGCCATGAAAGAACGGTGTT+AGG 0.353355 6:-109403223 None:intergenic
GGAGGAAGTACCTATCCTTT+TGG 0.369437 6:+109406141 MsG0680035617.01.T01:CDS
CTCACTCTCTTTATGTGGAT+GGG 0.371029 6:+109407437 MsG0680035617.01.T01:three_prime_UTR
TTTAAAGAAAGGGGAACTTC+AGG 0.373529 6:+109405772 MsG0680035617.01.T01:CDS
AATTGATCTGATTTCTAATT+GGG 0.379063 6:+109407327 MsG0680035617.01.T01:three_prime_UTR
GATATACCAGACACAACTTA+TGG 0.383358 6:-109407249 None:intergenic
AGAAGAGTGCACAGCAGATA+TGG 0.383434 6:+109407732 MsG0680035617.01.T01:three_prime_UTR
CCCTTGGATTAGTCGGTCCT+TGG 0.384852 6:-109406819 None:intergenic
GCATGGTTGGCCTTGTTAGC+TGG 0.386891 6:+109406899 MsG0680035617.01.T01:three_prime_UTR
ACAAACCTCTAAGCAAATAC+TGG 0.388442 6:-109403450 None:intergenic
TACCACAATGTCTCGTTCAT+TGG 0.388509 6:+109403114 MsG0680035617.01.T01:exon
TGAATCAAAATCTGATTTGA+AGG 0.396855 6:+109407762 MsG0680035617.01.T01:three_prime_UTR
GCTCACTCTCTTTATGTGGA+TGG 0.397818 6:+109407436 MsG0680035617.01.T01:three_prime_UTR
TGTGCGGTTCTGCTTTCTCT+TGG 0.398110 6:+109407999 MsG0680035617.01.T01:three_prime_UTR
AGACTTAGCAAGAACACCTT+TGG 0.400926 6:-109403390 None:intergenic
GGTAGAATTTGGTCATGGGC+AGG 0.406968 6:+109406719 MsG0680035617.01.T01:three_prime_UTR
AAAGGGGAACTTCAGGTTGC+TGG 0.407398 6:+109405779 MsG0680035617.01.T01:CDS
TTCTTTCCATAAGTTGTGTC+TGG 0.408944 6:+109407243 MsG0680035617.01.T01:three_prime_UTR
CGGAACTTGAACGAACCAAC+TGG 0.411299 6:-109408389 None:intergenic
TAGAATTTGGTCATGGGCAG+GGG 0.415383 6:+109406721 MsG0680035617.01.T01:three_prime_UTR
CCCGCATGTGGGTGTGGGAT+TGG 0.419673 6:-109406844 None:intergenic
GTAGAATTTGGTCATGGGCA+GGG 0.422321 6:+109406720 MsG0680035617.01.T01:three_prime_UTR
ACCGTTCTTTCATGGCGTTC+CGG 0.423741 6:+109403229 MsG0680035617.01.T01:CDS
GGTTCTGCTTTCTCTTGGTC+TGG 0.427589 6:+109408004 MsG0680035617.01.T01:three_prime_UTR
AGGATAGGTACTTCCTCCTC+AGG 0.427749 6:-109406136 None:intergenic
TGTTGTCCCTCAGTAGGCTT+AGG 0.430168 6:-109407577 None:intergenic
TTGAAGATGCTAAGTTGTAC+AGG 0.433138 6:+109407638 MsG0680035617.01.T01:three_prime_UTR
TGTCCCTTCTTTAGAAATAA+CGG 0.436135 6:-109406188 None:intergenic
TCTTGCTCACTCTCTTTATG+TGG 0.440257 6:+109407432 MsG0680035617.01.T01:three_prime_UTR
AAGGATTTGAATGCGGCGTT+TGG 0.443098 6:+109403413 MsG0680035617.01.T01:CDS
CAAAAGCAAACAATTTCGTC+TGG 0.443371 6:+109407553 MsG0680035617.01.T01:three_prime_UTR
GTTCTTTGGGGCAATGGTGC+AGG 0.443834 6:-109407496 None:intergenic
TCCTGAAAATCATGGATACT+TGG 0.447974 6:-109408178 None:intergenic
TCAGAAGTTCTTTGGGGCAA+TGG 0.449572 6:-109407502 None:intergenic
AGGACAAGATACCTGCTTCT+TGG 0.450486 6:-109405958 None:intergenic
GCAACCGTTATTTCTAAAGA+AGG 0.452079 6:+109406184 MsG0680035617.01.T01:CDS
CTGTTTGATCAACAGCGAAA+TGG 0.452824 6:-109405929 None:intergenic
CCAATCCCACACCCACATGC+GGG 0.453805 6:+109406844 MsG0680035617.01.T01:three_prime_UTR
TTCTATTCTTAAGTTTCCTA+GGG 0.456608 6:+109408152 MsG0680035617.01.T01:three_prime_UTR
ATTTCAAATATTATTACTGT+TGG 0.466462 6:+109407201 MsG0680035617.01.T01:three_prime_UTR
ATGTAGCCAACCCCACTTAG+TGG 0.468009 6:-109406367 None:intergenic
GCAGCAGCGCGTACCCTCAA+TGG 0.474471 6:-109406112 None:intergenic
TGTCATAAATGTTCAAAAGA+TGG 0.483077 6:-109406538 None:intergenic
CAGATAAGTCCTGAAAATCA+TGG 0.488086 6:-109408186 None:intergenic
GTGCACTCTTCTTCAGATAG+TGG 0.490526 6:-109407721 None:intergenic
GGGTGTGGGATTGGACCCCT+TGG 0.495247 6:-109406835 None:intergenic
TTTGGTTGTTGTCCCTCAGT+AGG 0.497330 6:-109407583 None:intergenic
CCACTTAGTGGCATAAGGCT+TGG 0.499202 6:-109406339 None:intergenic
TCACTCTCTTTATGTGGATG+GGG 0.502380 6:+109407438 MsG0680035617.01.T01:three_prime_UTR
TTAGTGGCAACCCCACTTAG+TGG 0.505197 6:-109406351 None:intergenic
GCCATGAAAGAACGGTGTTA+GGG 0.509375 6:-109403222 None:intergenic
CAACCCCACTTAGTGGCATA+AGG 0.509884 6:-109406344 None:intergenic
AACAGCAGCCTCCAAGAAGC+AGG 0.509930 6:+109405947 MsG0680035617.01.T01:CDS
ACGCGCTGCTGCCCCTGAGG+AGG 0.512519 6:+109406123 MsG0680035617.01.T01:CDS
TATTTGAAATGAAAGAATCA+TGG 0.512793 6:-109407188 None:intergenic
ACAAGATACCTGCTTCTTGG+AGG 0.518328 6:-109405955 None:intergenic
TTGTTAGCTGGAAAACACTC+TGG 0.518338 6:+109406911 MsG0680035617.01.T01:three_prime_UTR
GGGTTGCCACTAAGTGGGGT+TGG 0.527376 6:+109406361 MsG0680035617.01.T01:three_prime_UTR
TTTATGGGTTGGATAAAATG+TGG 0.528656 6:-109406509 None:intergenic
TAACCACTTGGTTCCAAACA+AGG 0.530747 6:-109406967 None:intergenic
ACTTCAGGTTGCTGGTAAAG+AGG 0.533153 6:+109405787 MsG0680035617.01.T01:CDS
CTATAAAACGGTGTCCATTG+AGG 0.535043 6:+109406098 MsG0680035617.01.T01:CDS
TATAAAACGGTGTCCATTGA+GGG 0.542061 6:+109406099 MsG0680035617.01.T01:CDS
CTTCAGGTTGCTGGTAAAGA+GGG 0.542548 6:+109405788 MsG0680035617.01.T01:CDS
TGAAGTGTTGCAGTCACATA+CGG 0.542659 6:+109403352 MsG0680035617.01.T01:CDS
TTTGGGTAGAATTTGGTCAT+GGG 0.545802 6:+109406715 MsG0680035617.01.T01:three_prime_UTR
AAAACTCGGTATTCGGTCCA+AGG 0.546990 6:+109406802 MsG0680035617.01.T01:three_prime_UTR
TCCAATCCCACACCCACATG+CGG 0.548336 6:+109406843 MsG0680035617.01.T01:three_prime_UTR
CCAAGCCTTATGCCACTAAG+TGG 0.549211 6:+109406339 MsG0680035617.01.T01:three_prime_UTR
ATTGGACCCCTTGGATTAGT+CGG 0.551579 6:-109406826 None:intergenic
TTCATACAAAGTAACAGAAG+TGG 0.552956 6:-109408269 None:intergenic
AGAAGCACTACCCTATAAAA+CGG 0.553845 6:+109406086 MsG0680035617.01.T01:CDS
GCTTGTGCCACTCACTCTTG+TGG 0.558268 6:-109407666 None:intergenic
CGTTCATTGGTTCAACCAGT+AGG 0.559659 6:+109403127 MsG0680035617.01.T01:CDS
CTAGTATTGTCAATCCCAGT+TGG 0.565770 6:+109408374 MsG0680035617.01.T01:three_prime_UTR
TTTGATAAGCAGATTGAATG+TGG 0.566036 6:-109407106 None:intergenic
AAGTGGGGTTGCCACTAAGT+GGG 0.566758 6:+109406356 MsG0680035617.01.T01:three_prime_UTR
TAAGTGGGGTTGCCACTAAG+TGG 0.567988 6:+109406355 MsG0680035617.01.T01:three_prime_UTR
CAACCGTTATTTCTAAAGAA+GGG 0.568663 6:+109406185 MsG0680035617.01.T01:CDS
TCCAAGGACCGACTAATCCA+AGG 0.570441 6:+109406818 MsG0680035617.01.T01:three_prime_UTR
GCATGATTGAACGCCTCATG+AGG 0.570502 6:+109405901 MsG0680035617.01.T01:intron
CAAGCCTTATGCCACTAAGT+GGG 0.571285 6:+109406340 MsG0680035617.01.T01:three_prime_UTR
GGAAAAGCTGAGCGAGTGGA+AGG 0.571341 6:+109406162 MsG0680035617.01.T01:CDS
TTTATCATTCAGCTCAAGCA+CGG 0.574553 6:-109407527 None:intergenic
TTTGTTATGAATAAGATGCA+TGG 0.575041 6:+109407397 MsG0680035617.01.T01:three_prime_UTR
TACAGGAATATGTTAATAGT+CGG 0.576140 6:+109406473 MsG0680035617.01.T01:three_prime_UTR
CACTCTTCTTCAGATAGTGG+AGG 0.576466 6:-109407718 None:intergenic
AGAATTAATTTATAACCACT+TGG 0.576962 6:-109406979 None:intergenic
AAGTTTGAGAAGTTGTTCGT+TGG 0.583856 6:+109406615 MsG0680035617.01.T01:three_prime_UTR
GGATAGGTACTTCCTCCTCA+GGG 0.584943 6:-109406135 None:intergenic
CAATCCCACACCCACATGCG+GGG 0.585338 6:+109406845 MsG0680035617.01.T01:three_prime_UTR
ATGTTAAATAGCGGCTATAG+CGG 0.585494 6:-109408433 None:intergenic
GCCGGAACGCCATGAAAGAA+CGG 0.596078 6:-109403230 None:intergenic
GTTTATACGAATGTTTCCAA+AGG 0.596362 6:+109403374 MsG0680035617.01.T01:CDS
CCAAGGACCGACTAATCCAA+GGG 0.600689 6:+109406819 MsG0680035617.01.T01:three_prime_UTR
AAGAATTATAATTAATAACA+GGG 0.603519 6:-109407225 None:intergenic
AATCCCACACCCACATGCGG+GGG 0.603966 6:+109406846 MsG0680035617.01.T01:three_prime_UTR
GTGTGTGTGACACACATACT+AGG 0.605693 6:-109408313 None:intergenic
TGAAGATGCTAAGTTGTACA+GGG 0.615157 6:+109407639 MsG0680035617.01.T01:three_prime_UTR
GGTACGCGCTGCTGCCCCTG+AGG 0.619533 6:+109406120 MsG0680035617.01.T01:CDS
AAGCCTTATGCCACTAAGTG+GGG 0.622431 6:+109406341 MsG0680035617.01.T01:three_prime_UTR
AGTGGGGTTGCCACTAAGTG+GGG 0.623924 6:+109406357 MsG0680035617.01.T01:three_prime_UTR
CATGGATACTTGGATCCCCT+AGG 0.627204 6:-109408168 None:intergenic
AAAATAAAACTAGAAATACA+AGG 0.629614 6:+109406640 MsG0680035617.01.T01:three_prime_UTR
CTTCTAGAACAGAAAACCCA+GGG 0.632685 6:-109406282 None:intergenic
CGAAATGGATATCCCTCATG+AGG 0.633330 6:-109405914 None:intergenic
ATCCCACACCCACATGCGGG+GGG 0.635278 6:+109406847 MsG0680035617.01.T01:three_prime_UTR
ACGGATTCAGAAGTTCTTTG+GGG 0.636915 6:-109407508 None:intergenic
GGAACTTGAACGAACCAACT+GGG 0.637452 6:-109408388 None:intergenic
TGACAATCCTTATACAGACC+AGG 0.646899 6:-109407370 None:intergenic
GGGAACACCACAAGAGTGAG+TGG 0.646994 6:+109407659 MsG0680035617.01.T01:three_prime_UTR
ACAATATGAAGCGTAAAACA+AGG 0.648014 6:+109407689 MsG0680035617.01.T01:three_prime_UTR
TGTGGATGGGGATACTCATG+TGG 0.649096 6:+109407450 MsG0680035617.01.T01:three_prime_UTR
ACTCTTCTTCAGATAGTGGA+GGG 0.651530 6:-109407717 None:intergenic
AACCAATGAACGAGACATTG+TGG 0.651646 6:-109403116 None:intergenic
CATGATTGAACGCCTCATGA+GGG 0.655277 6:+109405902 MsG0680035617.01.T01:CDS
GTCTGGACCTAAGCCTACTG+AGG 0.658281 6:+109407570 MsG0680035617.01.T01:three_prime_UTR
GCTTCTAGAACAGAAAACCC+AGG 0.666631 6:-109406283 None:intergenic
ACACCTTGTTTGGAACCAAG+TGG 0.672283 6:+109406964 MsG0680035617.01.T01:three_prime_UTR
AATAAAGCACTGTTGTGTAG+CGG 0.679409 6:-109408409 None:intergenic
ATGGAACATTTATAGAGACA+TGG 0.679562 6:-109407169 None:intergenic
AGAATTATAATTAATAACAG+GGG 0.679888 6:-109407224 None:intergenic
TCTGGACCTAAGCCTACTGA+GGG 0.681737 6:+109407571 MsG0680035617.01.T01:three_prime_UTR
TAAGTCTAAGGATTTGAATG+CGG 0.687944 6:+109403406 MsG0680035617.01.T01:CDS
TCTATTCTTAAGTTTCCTAG+GGG 0.691891 6:+109408153 MsG0680035617.01.T01:three_prime_UTR
GTTGTTCGTCTCAAGAAACA+CGG 0.697669 6:+109403175 MsG0680035617.01.T01:CDS
GATAGGTACTTCCTCCTCAG+GGG 0.704780 6:-109406134 None:intergenic
TTACTGGTGACAGATTTGTG+CGG 0.714129 6:+109407983 MsG0680035617.01.T01:three_prime_UTR
CAAGGACCGACTAATCCAAG+GGG 0.754786 6:+109406820 MsG0680035617.01.T01:three_prime_UTR
TGTGGATTACAATGATCACG+AGG 0.775410 6:+109407468 MsG0680035617.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAATTATAATTAATAAC+AGG - Chr6:109407229-109407248 None:intergenic 10.0%
!! AAGAATTATAATTAATAACA+GGG - Chr6:109407228-109407247 None:intergenic 10.0%
!!! ATAATAACTTTTAATCATTA+AGG + Chr6:109408213-109408232 MsG0680035617.01.T01:three_prime_UTR 10.0%
!! AAAAAAAAGAAAAAAGCTTA+TGG - Chr6:109405203-109405222 None:intergenic 15.0%
!! AAAATAAAACTAGAAATACA+AGG + Chr6:109406640-109406659 MsG0680035617.01.T01:three_prime_UTR 15.0%
!! AAATAATGTTTATTCAAAGT+TGG + Chr6:109405034-109405053 MsG0680035617.01.T01:intron 15.0%
!! AGAATATTTACAACTTATTT+GGG + Chr6:109405412-109405431 MsG0680035617.01.T01:intron 15.0%
!! AGAATTATAATTAATAACAG+GGG - Chr6:109407227-109407246 None:intergenic 15.0%
!! ATGATAATCACAAAAAATTA+GGG - Chr6:109403274-109403293 None:intergenic 15.0%
!! ATTTCAAATATTATTACTGT+TGG + Chr6:109407201-109407220 MsG0680035617.01.T01:three_prime_UTR 15.0%
!!! AAGATATAAGTTGATTATAA+GGG - Chr6:109405590-109405609 None:intergenic 15.0%
!!! ATAAGCTTTTTTCTTTTTTT+TGG + Chr6:109405202-109405221 MsG0680035617.01.T01:intron 15.0%
!!! TTCTTTTTTGATGAATAAAA+GGG - Chr6:109404976-109404995 None:intergenic 15.0%
!!! TTTCTTTTTTGATGAATAAA+AGG - Chr6:109404977-109404996 None:intergenic 15.0%
!!! TTTTTTGGAATAAGTTATTT+AGG + Chr6:109405217-109405236 MsG0680035617.01.T01:intron 15.0%
!! AATTGATCTGATTTCTAATT+GGG + Chr6:109407327-109407346 MsG0680035617.01.T01:three_prime_UTR 20.0%
!! ACTAATTATTATGCATAAAC+TGG - Chr6:109405691-109405710 None:intergenic 20.0%
!! AGAATTAATTTATAACCACT+TGG - Chr6:109406982-109407001 None:intergenic 20.0%
!! CATGATAATCACAAAAAATT+AGG - Chr6:109403275-109403294 None:intergenic 20.0%
!! CTAATTATTATGCATAAACT+GGG - Chr6:109405690-109405709 None:intergenic 20.0%
!! GAGAATATTTACAACTTATT+TGG + Chr6:109405411-109405430 MsG0680035617.01.T01:intron 20.0%
!! TAATTGATCTGATTTCTAAT+TGG + Chr6:109407326-109407345 MsG0680035617.01.T01:three_prime_UTR 20.0%
!! TATATGAGACAATCATTATA+TGG - Chr6:109406000-109406019 None:intergenic 20.0%
!! TGATTAATTGAGTTAATTGA+TGG + Chr6:109403295-109403314 MsG0680035617.01.T01:intron 20.0%
!! TTCGATGTAATTTCAATTTA+AGG - Chr6:109407954-109407973 None:intergenic 20.0%
!! TTTACATAATTTATGCTTAG+AGG + Chr6:109404100-109404119 MsG0680035617.01.T01:intron 20.0%
!!! AGGTTTTTAGTTTCTATTTT+GGG + Chr6:109404942-109404961 MsG0680035617.01.T01:intron 20.0%
!!! AGTTAATTGATGGATTAATT+GGG + Chr6:109403305-109403324 MsG0680035617.01.T01:intron 20.0%
!!! ATTGACTTTTTAATAAGCTT+TGG + Chr6:109403881-109403900 MsG0680035617.01.T01:intron 20.0%
!!! CAAGATATAAGTTGATTATA+AGG - Chr6:109405591-109405610 None:intergenic 20.0%
!!! TATTTGAAATGAAAGAATCA+TGG - Chr6:109407191-109407210 None:intergenic 20.0%
!!! TCTTTTTTGATGAATAAAAG+GGG - Chr6:109404975-109404994 None:intergenic 20.0%
!!! TTTTGTTGATTTCTTTGTTT+CGG - Chr6:109403056-109403075 None:intergenic 20.0%
! ACCAGATAAAATGTGATAAA+AGG - Chr6:109406585-109406604 None:intergenic 25.0%
! ACTATCACAATAAACTAGAA+AGG - Chr6:109404908-109404927 None:intergenic 25.0%
! ATAATCAACTTATATCTTGC+AGG + Chr6:109405592-109405611 MsG0680035617.01.T01:intron 25.0%
! CATAATTTATGCTTAGAGTT+TGG + Chr6:109404104-109404123 MsG0680035617.01.T01:intron 25.0%
! CTTTGATTCTGCTAAAATTT+CGG + Chr6:109407300-109407319 MsG0680035617.01.T01:three_prime_UTR 25.0%
! GTATTTGTATTTATCTGCTA+AGG + Chr6:109404482-109404501 MsG0680035617.01.T01:intron 25.0%
! TAACCCATAAAAAAGCTAAT+GGG + Chr6:109407142-109407161 MsG0680035617.01.T01:three_prime_UTR 25.0%
! TACAGAAATCATACCAAAAA+TGG + Chr6:109404591-109404610 MsG0680035617.01.T01:intron 25.0%
! TACAGGAATATGTTAATAGT+CGG + Chr6:109406473-109406492 MsG0680035617.01.T01:three_prime_UTR 25.0%
! TCATAAACCCTCAAATAATA+AGG - Chr6:109404855-109404874 None:intergenic 25.0%
! TGTCATAAATGTTCAAAAGA+TGG - Chr6:109406541-109406560 None:intergenic 25.0%
! TTCTATTCTTAAGTTTCCTA+GGG + Chr6:109408152-109408171 MsG0680035617.01.T01:three_prime_UTR 25.0%
! TTTATCCAACCCATAAAAAA+GGG + Chr6:109406515-109406534 MsG0680035617.01.T01:three_prime_UTR 25.0%
!! ATTGTTTTCATGTCCTTTTT+AGG + Chr6:109406686-109406705 MsG0680035617.01.T01:three_prime_UTR 25.0%
!! CATTTTATCCAACACAAAAA+CGG + Chr6:109406424-109406443 MsG0680035617.01.T01:three_prime_UTR 25.0%
!! TCCTTTTATCACATTTTATC+TGG + Chr6:109406581-109406600 MsG0680035617.01.T01:three_prime_UTR 25.0%
!! TCTTTTGAACATTTATGACA+AGG + Chr6:109406541-109406560 MsG0680035617.01.T01:three_prime_UTR 25.0%
!! TGAATCAAAATCTGATTTGA+AGG + Chr6:109407762-109407781 MsG0680035617.01.T01:three_prime_UTR 25.0%
!! TTTGTTATGAATAAGATGCA+TGG + Chr6:109407397-109407416 MsG0680035617.01.T01:three_prime_UTR 25.0%
!! TTTTATCCAACCCATAAAAA+AGG + Chr6:109406514-109406533 MsG0680035617.01.T01:three_prime_UTR 25.0%
!!! AAGGATTATTCATTTTGAGT+TGG + Chr6:109407781-109407800 MsG0680035617.01.T01:three_prime_UTR 25.0%
!!! ACATCTCAAACACTTTTTTT+TGG - Chr6:109407832-109407851 None:intergenic 25.0%
!!! ACTTGTTTGTTTTGAAAACT+CGG + Chr6:109406788-109406807 MsG0680035617.01.T01:three_prime_UTR 25.0%
!!! GAGGTTTTTAGTTTCTATTT+TGG + Chr6:109404941-109404960 MsG0680035617.01.T01:intron 25.0%
!!! GAGTTAATTGATGGATTAAT+TGG + Chr6:109403304-109403323 MsG0680035617.01.T01:intron 25.0%
!!! TGCTTGTTTTTGTTTTTTGT+TGG + Chr6:109406877-109406896 MsG0680035617.01.T01:three_prime_UTR 25.0%
!!! TGTTGCAGATTTTAAAGAAA+GGG + Chr6:109405762-109405781 MsG0680035617.01.T01:intron 25.0%
!!! TTTTAATAAGCTTTGGTGTT+AGG + Chr6:109403888-109403907 MsG0680035617.01.T01:intron 25.0%
ACAATATGAAGCGTAAAACA+AGG + Chr6:109407689-109407708 MsG0680035617.01.T01:three_prime_UTR 30.0%
ACTTTCATATAAGTTGTGAG+CGG - Chr6:109405257-109405276 None:intergenic 30.0%
AGCTCAACCTTATTATTTGA+GGG + Chr6:109404845-109404864 MsG0680035617.01.T01:intron 30.0%
AGTGATTTAACTGTTAGTTG+AGG + Chr6:109405708-109405727 MsG0680035617.01.T01:intron 30.0%
ATGGAACATTTATAGAGACA+TGG - Chr6:109407172-109407191 None:intergenic 30.0%
CATAATTTATGCTTAGAGGT+TGG + Chr6:109404146-109404165 MsG0680035617.01.T01:intron 30.0%
CTAACCCATAAAAAAGCTAA+TGG + Chr6:109407141-109407160 MsG0680035617.01.T01:three_prime_UTR 30.0%
CTTCTATTCTTAAGTTTCCT+AGG + Chr6:109408151-109408170 MsG0680035617.01.T01:three_prime_UTR 30.0%
GATTATGAAAGTCGTATTAC+AGG + Chr6:109406039-109406058 MsG0680035617.01.T01:intron 30.0%
GCTTTATCCAATAGTTGAAA+AGG - Chr6:109404673-109404692 None:intergenic 30.0%
GTTGGATAAAATGTGGTAAA+AGG - Chr6:109406505-109406524 None:intergenic 30.0%
GTTTATACGAATGTTTCCAA+AGG + Chr6:109403374-109403393 MsG0680035617.01.T01:CDS 30.0%
TAAAAACCTCTTAGAAAGAG+AGG - Chr6:109404931-109404950 None:intergenic 30.0%
TAACTCATTTCCTAAGCTTA+TGG - Chr6:109404569-109404588 None:intergenic 30.0%
TAAGCACTCATGCTTAATTT+GGG + Chr6:109404443-109404462 MsG0680035617.01.T01:intron 30.0%
TAAGTCTAAGGATTTGAATG+CGG + Chr6:109403406-109403425 MsG0680035617.01.T01:CDS 30.0%
TAGCTACAAAACAACTAACA+TGG - Chr6:109403498-109403517 None:intergenic 30.0%
TAGCTCAACCTTATTATTTG+AGG + Chr6:109404844-109404863 MsG0680035617.01.T01:intron 30.0%
TATATCTGCATTTGCGTATA+TGG + Chr6:109407266-109407285 MsG0680035617.01.T01:three_prime_UTR 30.0%
TCTATTCTTAAGTTTCCTAG+GGG + Chr6:109408153-109408172 MsG0680035617.01.T01:three_prime_UTR 30.0%
TGACATTGAATTGATCAAGT+AGG - Chr6:109404177-109404196 None:intergenic 30.0%
TGATATCATAAACCTACCTA+TGG - Chr6:109404758-109404777 None:intergenic 30.0%
TTAAGCACTCATGCTTAATT+TGG + Chr6:109404442-109404461 MsG0680035617.01.T01:intron 30.0%
TTCATACAAAGTAACAGAAG+TGG - Chr6:109408272-109408291 None:intergenic 30.0%
TTTATGCTTAGAGTTTGGTT+AGG + Chr6:109404109-109404128 MsG0680035617.01.T01:intron 30.0%
TTTGATAAGCAGATTGAATG+TGG - Chr6:109407109-109407128 None:intergenic 30.0%
! AAAAGTCTTGTGCATTACAA+TGG - Chr6:109405850-109405869 None:intergenic 30.0%
! ATAAGCACTGTCATAATGTT+TGG + Chr6:109405146-109405165 MsG0680035617.01.T01:intron 30.0%
! ATTGGGTTTTTGTAGTGAAA+AGG + Chr6:109403322-109403341 MsG0680035617.01.T01:intron 30.0%
! ATTTTATTCTCTGTAACCCT+GGG + Chr6:109406266-109406285 MsG0680035617.01.T01:CDS 30.0%
! GGATTTCTTTTGCATTTGTA+GGG - Chr6:109408251-109408270 None:intergenic 30.0%
! TAAGCACTGTCATAATGTTT+GGG + Chr6:109405147-109405166 MsG0680035617.01.T01:intron 30.0%
! TGGATTTCTTTTGCATTTGT+AGG - Chr6:109408252-109408271 None:intergenic 30.0%
! TGTCCCTTCTTTAGAAATAA+CGG - Chr6:109406191-109406210 None:intergenic 30.0%
! TTGATTATAAGGGTATGCTT+GGG - Chr6:109405580-109405599 None:intergenic 30.0%
!! AAAAGTGTTTGAGATGTTAC+TGG + Chr6:109407835-109407854 MsG0680035617.01.T01:three_prime_UTR 30.0%
!! ATGGAATTCTTTAGAATGAC+AGG - Chr6:109405981-109406000 None:intergenic 30.0%
!! CAACCGTTATTTCTAAAGAA+GGG + Chr6:109406185-109406204 MsG0680035617.01.T01:CDS 30.0%
!! CTGTTGCAGATTTTAAAGAA+AGG + Chr6:109405761-109405780 MsG0680035617.01.T01:intron 30.0%
!! GTTGCAGATTTTAAAGAAAG+GGG + Chr6:109405763-109405782 MsG0680035617.01.T01:intron 30.0%
!! TATCTACAGTTGTTTTCAGT+AGG + Chr6:109405437-109405456 MsG0680035617.01.T01:intron 30.0%
!! TTTATGGGTTGGATAAAATG+TGG - Chr6:109406512-109406531 None:intergenic 30.0%
!!! AAAAGATGGCCCTTTTTTAT+GGG - Chr6:109406527-109406546 None:intergenic 30.0%
!!! ACTTCCCATTAGCTTTTTTA+TGG - Chr6:109407149-109407168 None:intergenic 30.0%
!!! CTTCCCATTAGCTTTTTTAT+GGG - Chr6:109407148-109407167 None:intergenic 30.0%
!!! GTTTTTGTTTTTTGTTGGCA+TGG + Chr6:109406882-109406901 MsG0680035617.01.T01:three_prime_UTR 30.0%
!!! TAAGGAGTTTTTTTTCTCTG+TGG - Chr6:109407936-109407955 None:intergenic 30.0%
!!! TGTTTTGAAAACTCGGTATT+CGG + Chr6:109406795-109406814 MsG0680035617.01.T01:three_prime_UTR 30.0%
!!! TTTTGATAAGCTTTGGTGTT+CGG + Chr6:109404303-109404322 MsG0680035617.01.T01:intron 30.0%
AAGTTTGAGAAGTTGTTCGT+TGG + Chr6:109406615-109406634 MsG0680035617.01.T01:three_prime_UTR 35.0%
AATAACCAACTTCTGATCGA+AGG - Chr6:109404082-109404101 None:intergenic 35.0%
AATGGCTGAGTTATCAGTTA+TGG + Chr6:109404609-109404628 MsG0680035617.01.T01:intron 35.0%
AATTGTAAAGTTCTCCCATG+CGG + Chr6:109404800-109404819 MsG0680035617.01.T01:intron 35.0%
AATTGTATATGTCTGTGTCG+TGG + Chr6:109403586-109403605 MsG0680035617.01.T01:intron 35.0%
ACAAACCTCTAAGCAAATAC+TGG - Chr6:109403453-109403472 None:intergenic 35.0%
ATAAACTAGAAAGGCTAGGT+AGG - Chr6:109404899-109404918 None:intergenic 35.0%
ATGGCTGAGTTATCAGTTAT+GGG + Chr6:109404610-109404629 MsG0680035617.01.T01:intron 35.0%
ATTCAGTTAGCAATATCACG+TGG + Chr6:109404647-109404666 MsG0680035617.01.T01:intron 35.0%
CAAAAGCAAACAATTTCGTC+TGG + Chr6:109407553-109407572 MsG0680035617.01.T01:three_prime_UTR 35.0%
CAAGACTCTCCTAACAAAAT+AGG - Chr6:109407898-109407917 None:intergenic 35.0%
CACAATAAACTAGAAAGGCT+AGG - Chr6:109404903-109404922 None:intergenic 35.0%
CAGATAAGTCCTGAAAATCA+TGG - Chr6:109408189-109408208 None:intergenic 35.0%
CAGGGTTACAGAGAATAAAA+TGG - Chr6:109406267-109406286 None:intergenic 35.0%
CATCGAACGTATTTCATTAC+TGG + Chr6:109407967-109407986 MsG0680035617.01.T01:three_prime_UTR 35.0%
CATGGGAGAACTTTACAATT+GGG - Chr6:109404800-109404819 None:intergenic 35.0%
CTTCTATAATCAAGACAACG+TGG - Chr6:109405516-109405535 None:intergenic 35.0%
GAACACCAAAGCTTATCAAA+AGG - Chr6:109404304-109404323 None:intergenic 35.0%
GATATACCAGACACAACTTA+TGG - Chr6:109407252-109407271 None:intergenic 35.0%
GCTAAGGTATGCATTTATCA+AGG + Chr6:109404498-109404517 MsG0680035617.01.T01:intron 35.0%
TAAACTAGAAAGGCTAGGTA+GGG - Chr6:109404898-109404917 None:intergenic 35.0%
TATAAAACGGTGTCCATTGA+GGG + Chr6:109406099-109406118 MsG0680035617.01.T01:CDS 35.0%
TATCACATGTCCATAAGCTT+AGG + Chr6:109404556-109404575 MsG0680035617.01.T01:intron 35.0%
TCATTCCAGTATTTGCTTAG+AGG + Chr6:109403445-109403464 MsG0680035617.01.T01:CDS 35.0%
TCCTGAAAATCATGGATACT+TGG - Chr6:109408181-109408200 None:intergenic 35.0%
TGAACATCTGTGATAGTTAC+AGG + Chr6:109406456-109406475 MsG0680035617.01.T01:three_prime_UTR 35.0%
TGAAGATGCTAAGTTGTACA+GGG + Chr6:109407639-109407658 MsG0680035617.01.T01:three_prime_UTR 35.0%
TTCTTTCCATAAGTTGTGTC+TGG + Chr6:109407243-109407262 MsG0680035617.01.T01:three_prime_UTR 35.0%
TTGAAGATGCTAAGTTGTAC+AGG + Chr6:109407638-109407657 MsG0680035617.01.T01:three_prime_UTR 35.0%
TTTAAAGAAAGGGGAACTTC+AGG + Chr6:109405772-109405791 MsG0680035617.01.T01:CDS 35.0%
TTTATCATTCAGCTCAAGCA+CGG - Chr6:109407530-109407549 None:intergenic 35.0%
TTTGGGTAGAATTTGGTCAT+GGG + Chr6:109406715-109406734 MsG0680035617.01.T01:three_prime_UTR 35.0%
! AATACAAGGCGCATTTTATC+TGG + Chr6:109406654-109406673 MsG0680035617.01.T01:three_prime_UTR 35.0%
! ACAGACCTTTTGATAAGCTT+TGG + Chr6:109404296-109404315 MsG0680035617.01.T01:intron 35.0%
! ATACGTGTGCCTATTTTGTT+AGG + Chr6:109407886-109407905 MsG0680035617.01.T01:three_prime_UTR 35.0%
! CAATCATGCTGATAGTGTAA+GGG - Chr6:109405890-109405909 None:intergenic 35.0%
! CATGCATTTTCTGTAAGTTG+TGG + Chr6:109407083-109407102 MsG0680035617.01.T01:three_prime_UTR 35.0%
! CATTTTATTCTCTGTAACCC+TGG + Chr6:109406265-109406284 MsG0680035617.01.T01:CDS 35.0%
! CTATTTTGTTAGGAGAGTCT+TGG + Chr6:109407896-109407915 MsG0680035617.01.T01:three_prime_UTR 35.0%
! GCATTAAGAGTTCTGATTGA+AGG - Chr6:109404266-109404285 None:intergenic 35.0%
! GTTGATTATAAGGGTATGCT+TGG - Chr6:109405581-109405600 None:intergenic 35.0%
! TCAATCATGCTGATAGTGTA+AGG - Chr6:109405891-109405910 None:intergenic 35.0%
! TCAATGGACACCGTTTTATA+GGG - Chr6:109406099-109406118 None:intergenic 35.0%
! TCCAAGTATCCATGATTTTC+AGG + Chr6:109408177-109408196 MsG0680035617.01.T01:three_prime_UTR 35.0%
! TGTGTTGCTCAGTTATTTCA+TGG + Chr6:109406239-109406258 MsG0680035617.01.T01:CDS 35.0%
!! AACATGATCCGTTTTTGTGT+TGG - Chr6:109406435-109406454 None:intergenic 35.0%
!! AATAAAGCACTGTTGTGTAG+CGG - Chr6:109408412-109408431 None:intergenic 35.0%
!! ACTGATAACTCAGCCATTTT+TGG - Chr6:109404607-109404626 None:intergenic 35.0%
!! AGAAGCACTACCCTATAAAA+CGG + Chr6:109406086-109406105 MsG0680035617.01.T01:CDS 35.0%
!! GCAACCGTTATTTCTAAAGA+AGG + Chr6:109406184-109406203 MsG0680035617.01.T01:CDS 35.0%
!! TCCTTTTTAGGCAAGCTTTT+GGG + Chr6:109406698-109406717 MsG0680035617.01.T01:three_prime_UTR 35.0%
!! TTGGGTTGCAGATTTTGAAT+TGG + Chr6:109407345-109407364 MsG0680035617.01.T01:three_prime_UTR 35.0%
!! TTTTGGGTAGAATTTGGTCA+TGG + Chr6:109406714-109406733 MsG0680035617.01.T01:three_prime_UTR 35.0%
!!! CAAAAGATGGCCCTTTTTTA+TGG - Chr6:109406528-109406547 None:intergenic 35.0%
!!! CTGGTTTGCTTGTTTTAGTT+GGG + Chr6:109406930-109406949 MsG0680035617.01.T01:three_prime_UTR 35.0%
!!! TCTGGTTTGCTTGTTTTAGT+TGG + Chr6:109406929-109406948 MsG0680035617.01.T01:three_prime_UTR 35.0%
!!! TTGTTTTTTGTTGGCATGGT+TGG + Chr6:109406886-109406905 MsG0680035617.01.T01:three_prime_UTR 35.0%
AACATATCAATGCCCCGTTT+AGG - Chr6:109403728-109403747 None:intergenic 40.0%
AACCAATGAACGAGACATTG+TGG - Chr6:109403119-109403138 None:intergenic 40.0%
AATGCTGTCTAGTCAGTTCA+GGG + Chr6:109405815-109405834 MsG0680035617.01.T01:intron 40.0%
ACACTCACTTAGGGTACATA+TGG - Chr6:109405383-109405402 None:intergenic 40.0%
ACCCAAAAGCTTGCCTAAAA+AGG - Chr6:109406702-109406721 None:intergenic 40.0%
ACGGATTCAGAAGTTCTTTG+GGG - Chr6:109407511-109407530 None:intergenic 40.0%
AGACTTAGCAAGAACACCTT+TGG - Chr6:109403393-109403412 None:intergenic 40.0%
AGGTGTTCTTGCTAAGTCTA+AGG + Chr6:109403394-109403413 MsG0680035617.01.T01:CDS 40.0%
ATAGCTATGAAACACTGTCG+TGG + Chr6:109404211-109404230 MsG0680035617.01.T01:intron 40.0%
ATTTGCAGCTTGAGTGCTTA+AGG - Chr6:109405100-109405119 None:intergenic 40.0%
CACGGATTCAGAAGTTCTTT+GGG - Chr6:109407512-109407531 None:intergenic 40.0%
CTAGTATTGTCAATCCCAGT+TGG + Chr6:109408374-109408393 MsG0680035617.01.T01:three_prime_UTR 40.0%
CTATAAAACGGTGTCCATTG+AGG + Chr6:109406098-109406117 MsG0680035617.01.T01:CDS 40.0%
CTCACTCTCTTTATGTGGAT+GGG + Chr6:109407437-109407456 MsG0680035617.01.T01:three_prime_UTR 40.0%
CTGTTTGATCAACAGCGAAA+TGG - Chr6:109405932-109405951 None:intergenic 40.0%
CTTCCAAACACACTCACTTA+GGG - Chr6:109405392-109405411 None:intergenic 40.0%
GATAGTCCTCTCTTTCTAAG+AGG + Chr6:109404922-109404941 MsG0680035617.01.T01:intron 40.0%
GCATGGGAGAACTTTACAAT+TGG - Chr6:109404801-109404820 None:intergenic 40.0%
GTAGCTATGACACACTGATA+TGG + Chr6:109403511-109403530 MsG0680035617.01.T01:intron 40.0%
GTTGTTCGTCTCAAGAAACA+CGG + Chr6:109403175-109403194 MsG0680035617.01.T01:CDS 40.0%
TAACCACTTGGTTCCAAACA+AGG - Chr6:109406970-109406989 None:intergenic 40.0%
TAAGCACTCAAGCTGCAAAT+GGG + Chr6:109405100-109405119 MsG0680035617.01.T01:intron 40.0%
TACAATTGGGACTTAAGTCG+CGG - Chr6:109404787-109404806 None:intergenic 40.0%
TACACATCAGTTCCATAGGT+AGG + Chr6:109404743-109404762 MsG0680035617.01.T01:intron 40.0%
TACCACAATGTCTCGTTCAT+TGG + Chr6:109403114-109403133 MsG0680035617.01.T01:exon 40.0%
TATGGAACTGATGTGTAGCA+GGG - Chr6:109404740-109404759 None:intergenic 40.0%
TCACTCTCTTTATGTGGATG+GGG + Chr6:109407438-109407457 MsG0680035617.01.T01:three_prime_UTR 40.0%
TCTTCCAAACACACTCACTT+AGG - Chr6:109405393-109405412 None:intergenic 40.0%
TCTTGCTCACTCTCTTTATG+TGG + Chr6:109407432-109407451 MsG0680035617.01.T01:three_prime_UTR 40.0%
TGACAATCCTTATACAGACC+AGG - Chr6:109407373-109407392 None:intergenic 40.0%
TTAAGCACTCAAGCTGCAAA+TGG + Chr6:109405099-109405118 MsG0680035617.01.T01:intron 40.0%
TTACTGGTGACAGATTTGTG+CGG + Chr6:109407983-109408002 MsG0680035617.01.T01:three_prime_UTR 40.0%
TTGTTAGCTGGAAAACACTC+TGG + Chr6:109406911-109406930 MsG0680035617.01.T01:three_prime_UTR 40.0%
TTTCGAAATTACGTACACGC+CGG - Chr6:109403251-109403270 None:intergenic 40.0%
! AGTCTTGTGCATTACAATGG+TGG - Chr6:109405847-109405866 None:intergenic 40.0%
! CACTCATGCTTAATTTGGGT+TGG + Chr6:109404447-109404466 MsG0680035617.01.T01:intron 40.0%
! CAGGGGTTAATCTTTTGTTC+GGG + Chr6:109406738-109406757 MsG0680035617.01.T01:three_prime_UTR 40.0%
! CAGTGTCCTAAAAGTGTAGT+TGG - Chr6:109404237-109404256 None:intergenic 40.0%
! CAGTTATGGGCTATACATCA+AGG + Chr6:109404623-109404642 MsG0680035617.01.T01:intron 40.0%
! CTCAATGGACACCGTTTTAT+AGG - Chr6:109406100-109406119 None:intergenic 40.0%
! CTCAGCTTTTCCAAAAGGAT+AGG - Chr6:109406154-109406173 None:intergenic 40.0%
! CTTTTCTTTGACAGTGTTCG+TGG - Chr6:109408347-109408366 None:intergenic 40.0%
! GCAGGGGTTAATCTTTTGTT+CGG + Chr6:109406737-109406756 MsG0680035617.01.T01:three_prime_UTR 40.0%
! TGTGGATTACAATGATCACG+AGG + Chr6:109407468-109407487 MsG0680035617.01.T01:three_prime_UTR 40.0%
!! ACTCTTCTTCAGATAGTGGA+GGG - Chr6:109407720-109407739 None:intergenic 40.0%
!! AGAGTGTTTTCCAGCTAACA+AGG - Chr6:109406912-109406931 None:intergenic 40.0%
!! CGCATTTTATCTGGTTTCTC+AGG + Chr6:109406663-109406682 MsG0680035617.01.T01:three_prime_UTR 40.0%
!! CTTCTAGAACAGAAAACCCA+GGG - Chr6:109406285-109406304 None:intergenic 40.0%
!! GCAAGCTTTTGGGTAGAATT+TGG + Chr6:109406708-109406727 MsG0680035617.01.T01:three_prime_UTR 40.0%
!! GGGCATTGATATGTTGATAC+TGG + Chr6:109403733-109403752 MsG0680035617.01.T01:intron 40.0%
!! GTCCTTTTTAGGCAAGCTTT+TGG + Chr6:109406697-109406716 MsG0680035617.01.T01:three_prime_UTR 40.0%
!! GTTAATCGCTTTTGACCTAC+TGG - Chr6:109403145-109403164 None:intergenic 40.0%
!! TAGGTAGGGTAATGGAATCA+GGG - Chr6:109404884-109404903 None:intergenic 40.0%
!! TGAAGTGTTGCAGTCACATA+CGG + Chr6:109403352-109403371 MsG0680035617.01.T01:CDS 40.0%
!!! CAACTACACTTTTAGGACAC+TGG + Chr6:109404235-109404254 MsG0680035617.01.T01:intron 40.0%
!!! GTGTTGCACTTGTTTTGCTT+TGG - Chr6:109407604-109407623 None:intergenic 40.0%
!!! TTGTTTTAGTTGGGTCTGCT+AGG + Chr6:109406939-109406958 MsG0680035617.01.T01:three_prime_UTR 40.0%
AAAACTCGGTATTCGGTCCA+AGG + Chr6:109406802-109406821 MsG0680035617.01.T01:three_prime_UTR 45.0%
AAGGATTTGAATGCGGCGTT+TGG + Chr6:109403413-109403432 MsG0680035617.01.T01:CDS 45.0%
ACAAGATACCTGCTTCTTGG+AGG - Chr6:109405958-109405977 None:intergenic 45.0%
ACACACCTTCGATCAGAAGT+TGG + Chr6:109404074-109404093 MsG0680035617.01.T01:intron 45.0%
ACAGACACGGAAACCTAAAC+GGG + Chr6:109403712-109403731 MsG0680035617.01.T01:intron 45.0%
ACAGCGCGCAAATGAGTATT+TGG - Chr6:109407039-109407058 None:intergenic 45.0%
ACCCTAACACCGTTCTTTCA+TGG + Chr6:109403221-109403240 MsG0680035617.01.T01:CDS 45.0%
AGAAAGGCTAGGTAGGGTAA+TGG - Chr6:109404892-109404911 None:intergenic 45.0%
AGGACAAGATACCTGCTTCT+TGG - Chr6:109405961-109405980 None:intergenic 45.0%
ATGCCTTCAATCAGACGAGT+CGG + Chr6:109403831-109403850 MsG0680035617.01.T01:intron 45.0%
ATTGGAGCCTGGTCTGTATA+AGG + Chr6:109407363-109407382 MsG0680035617.01.T01:three_prime_UTR 45.0%
CAATGCTGTCTAGTCAGTTC+AGG + Chr6:109405814-109405833 MsG0680035617.01.T01:intron 45.0%
CACAGACACGGAAACCTAAA+CGG + Chr6:109403711-109403730 MsG0680035617.01.T01:intron 45.0%
CATGATTGAACGCCTCATGA+GGG + Chr6:109405902-109405921 MsG0680035617.01.T01:CDS 45.0%
CGAAATGGATATCCCTCATG+AGG - Chr6:109405917-109405936 None:intergenic 45.0%
CTATGGAACTGATGTGTAGC+AGG - Chr6:109404741-109404760 None:intergenic 45.0%
CTGCTACACATCAGTTCCAT+AGG + Chr6:109404739-109404758 MsG0680035617.01.T01:intron 45.0%
CTGCTAGGTTACACCTTGTT+TGG + Chr6:109406954-109406973 MsG0680035617.01.T01:three_prime_UTR 45.0%
GAAAGTCGTATTACAGGCTC+TGG + Chr6:109406045-109406064 MsG0680035617.01.T01:intron 45.0%
GCACGGATTCAGAAGTTCTT+TGG - Chr6:109407513-109407532 None:intergenic 45.0%
GCGATCAACCTTATCCAACA+AGG + Chr6:109404711-109404730 MsG0680035617.01.T01:intron 45.0%
GCTCACTCTCTTTATGTGGA+TGG + Chr6:109407436-109407455 MsG0680035617.01.T01:three_prime_UTR 45.0%
GGAACTTGAACGAACCAACT+GGG - Chr6:109408391-109408410 None:intergenic 45.0%
GTACCCTAAGTGAGTGTGTT+TGG + Chr6:109405386-109405405 MsG0680035617.01.T01:intron 45.0%
GTAGAATTTGGTCATGGGCA+GGG + Chr6:109406720-109406739 MsG0680035617.01.T01:three_prime_UTR 45.0%
GTGCACTCTTCTTCAGATAG+TGG - Chr6:109407724-109407743 None:intergenic 45.0%
GTGTGTGTGACACACATACT+AGG - Chr6:109408316-109408335 None:intergenic 45.0%
TAGAATTTGGTCATGGGCAG+GGG + Chr6:109406721-109406740 MsG0680035617.01.T01:three_prime_UTR 45.0%
TATGTTGGACACTGACGTGT+AGG + Chr6:109404045-109404064 MsG0680035617.01.T01:intron 45.0%
TGTCAGTGTCGTGTCTATGT+TGG + Chr6:109404030-109404049 MsG0680035617.01.T01:intron 45.0%
TGTCGCACACTAACATGTGT+AGG + Chr6:109403799-109403818 MsG0680035617.01.T01:intron 45.0%
TTTGGTTGTTGTCCCTCAGT+AGG - Chr6:109407586-109407605 None:intergenic 45.0%
! AAGCCTTATGCCACTAAGTG+GGG + Chr6:109406341-109406360 MsG0680035617.01.T01:three_prime_UTR 45.0%
! ACACCTTGTTTGGAACCAAG+TGG + Chr6:109406964-109406983 MsG0680035617.01.T01:three_prime_UTR 45.0%
! ACGCTTTCGATCAGAAGTGT+CGG + Chr6:109403636-109403655 MsG0680035617.01.T01:intron 45.0%
! ACTCGCTCAGCTTTTCCAAA+AGG - Chr6:109406159-109406178 None:intergenic 45.0%
! AGAAGAGTGCACAGCAGATA+TGG + Chr6:109407732-109407751 MsG0680035617.01.T01:three_prime_UTR 45.0%
! ATAAGGGTATGCTTGGGACA+TGG - Chr6:109405574-109405593 None:intergenic 45.0%
! CAAGCCTTATGCCACTAAGT+GGG + Chr6:109406340-109406359 MsG0680035617.01.T01:three_prime_UTR 45.0%
! CACGTGGCCTTTTCAACTAT+TGG + Chr6:109404663-109404682 MsG0680035617.01.T01:intron 45.0%
! CACTCTTCTTCAGATAGTGG+AGG - Chr6:109407721-109407740 None:intergenic 45.0%
! CGGGTGCAGTAGTTTTTCTT+AGG + Chr6:109406757-109406776 MsG0680035617.01.T01:three_prime_UTR 45.0%
! GCAGATTTTGAATTGGAGCC+TGG + Chr6:109407352-109407371 MsG0680035617.01.T01:three_prime_UTR 45.0%
! GCCATGAAAGAACGGTGTTA+GGG - Chr6:109403225-109403244 None:intergenic 45.0%
! TAAGGGTATGCTTGGGACAT+GGG - Chr6:109405573-109405592 None:intergenic 45.0%
! TCGTGGCCAACTACACTTTT+AGG + Chr6:109404228-109404247 MsG0680035617.01.T01:intron 45.0%
! TGTTGGATAAGGTTGATCGC+AGG - Chr6:109404711-109404730 None:intergenic 45.0%
!! ACTTCAGGTTGCTGGTAAAG+AGG + Chr6:109405787-109405806 MsG0680035617.01.T01:CDS 45.0%
!! AGGTAGGGTAATGGAATCAG+GGG - Chr6:109404883-109404902 None:intergenic 45.0%
!! ATGAAGCACTGACACAGACA+CGG + Chr6:109403699-109403718 MsG0680035617.01.T01:intron 45.0%
!! ATTGGACCCCTTGGATTAGT+CGG - Chr6:109406829-109406848 None:intergenic 45.0%
!! CGTTCATTGGTTCAACCAGT+AGG + Chr6:109403127-109403146 MsG0680035617.01.T01:CDS 45.0%
!! CTAGGTAGGGTAATGGAATC+AGG - Chr6:109404885-109404904 None:intergenic 45.0%
!! CTTCAGGTTGCTGGTAAAGA+GGG + Chr6:109405788-109405807 MsG0680035617.01.T01:CDS 45.0%
!! GCTTCTAGAACAGAAAACCC+AGG - Chr6:109406286-109406305 None:intergenic 45.0%
!! TCAGAAGTTCTTTGGGGCAA+TGG - Chr6:109407505-109407524 None:intergenic 45.0%
!! TTTTGGAAAAGCTGAGCGAG+TGG + Chr6:109406158-109406177 MsG0680035617.01.T01:CDS 45.0%
!!! GATGGCCCTTTTTTATGGGT+TGG - Chr6:109406523-109406542 None:intergenic 45.0%
!!! GGAGGAAGTACCTATCCTTT+TGG + Chr6:109406141-109406160 MsG0680035617.01.T01:CDS 45.0%
AAGTGGGGTTGCCACTAAGT+GGG + Chr6:109406356-109406375 MsG0680035617.01.T01:three_prime_UTR 50.0%
ACCGTTCTTTCATGGCGTTC+CGG + Chr6:109403229-109403248 MsG0680035617.01.T01:CDS 50.0%
AGGATAGGTACTTCCTCCTC+AGG - Chr6:109406139-109406158 None:intergenic 50.0%
ATGTAGCCAACCCCACTTAG+TGG - Chr6:109406370-109406389 None:intergenic 50.0%
CAACCCCACTTAGTGGCATA+AGG - Chr6:109406347-109406366 None:intergenic 50.0%
CAAGGACCGACTAATCCAAG+GGG + Chr6:109406820-109406839 MsG0680035617.01.T01:three_prime_UTR 50.0%
CACTCAAGCTGCAAATGGGT+TGG + Chr6:109405104-109405123 MsG0680035617.01.T01:intron 50.0%
CAGACACGGAAACCTAAACG+GGG + Chr6:109403713-109403732 MsG0680035617.01.T01:intron 50.0%
CATGGATACTTGGATCCCCT+AGG - Chr6:109408171-109408190 None:intergenic 50.0%
CCAAGGACCGACTAATCCAA+GGG + Chr6:109406819-109406838 MsG0680035617.01.T01:three_prime_UTR 50.0%
CCACTTAGTGGCATAAGGCT+TGG - Chr6:109406342-109406361 None:intergenic 50.0%
CGCCATGAAAGAACGGTGTT+AGG - Chr6:109403226-109403245 None:intergenic 50.0%
CGGAACTTGAACGAACCAAC+TGG - Chr6:109408392-109408411 None:intergenic 50.0%
GACACTTCTGATCGAAAGCG+TGG - Chr6:109403637-109403656 None:intergenic 50.0%
GATAGGTACTTCCTCCTCAG+GGG - Chr6:109406137-109406156 None:intergenic 50.0%
GCATGATTGAACGCCTCATG+AGG + Chr6:109405901-109405920 MsG0680035617.01.T01:intron 50.0%
GGATAGGTACTTCCTCCTCA+GGG - Chr6:109406138-109406157 None:intergenic 50.0%
GGTAGAATTTGGTCATGGGC+AGG + Chr6:109406719-109406738 MsG0680035617.01.T01:three_prime_UTR 50.0%
GGTTCTGCTTTCTCTTGGTC+TGG + Chr6:109408004-109408023 MsG0680035617.01.T01:three_prime_UTR 50.0%
TAAGTGGGGTTGCCACTAAG+TGG + Chr6:109406355-109406374 MsG0680035617.01.T01:three_prime_UTR 50.0%
TCCAAGGACCGACTAATCCA+AGG + Chr6:109406818-109406837 MsG0680035617.01.T01:three_prime_UTR 50.0%
TCGCAGGCAGCTAATGAACT+AGG - Chr6:109404695-109404714 None:intergenic 50.0%
TCTGGACCTAAGCCTACTGA+GGG + Chr6:109407571-109407590 MsG0680035617.01.T01:three_prime_UTR 50.0%
TGTGCGGTTCTGCTTTCTCT+TGG + Chr6:109407999-109408018 MsG0680035617.01.T01:three_prime_UTR 50.0%
TGTGGATGGGGATACTCATG+TGG + Chr6:109407450-109407469 MsG0680035617.01.T01:three_prime_UTR 50.0%
TGTTGTCCCTCAGTAGGCTT+AGG - Chr6:109407580-109407599 None:intergenic 50.0%
TTAGTGGCAACCCCACTTAG+TGG - Chr6:109406354-109406373 None:intergenic 50.0%
! CAGGGCATCCTTGTTGGATA+AGG - Chr6:109404722-109404741 None:intergenic 50.0%
! CCAAGCCTTATGCCACTAAG+TGG + Chr6:109406339-109406358 MsG0680035617.01.T01:three_prime_UTR 50.0%
! CGTCTGATTGAAGGCATGTC+TGG - Chr6:109403828-109403847 None:intergenic 50.0%
! TTCTGATCGAAAGCGTGGTC+AGG - Chr6:109403632-109403651 None:intergenic 50.0%
!! AAAGGGGAACTTCAGGTTGC+TGG + Chr6:109405779-109405798 MsG0680035617.01.T01:CDS 50.0%
!! ACAGGCTCTGGAGTTGATTC+AGG + Chr6:109406057-109406076 MsG0680035617.01.T01:intron 50.0%
!! AGTGTAAGGGCGCTTAGTCT+CGG - Chr6:109405877-109405896 None:intergenic 50.0%
AACAGCAGCCTCCAAGAAGC+AGG + Chr6:109405947-109405966 MsG0680035617.01.T01:CDS 55.0%
AGTGGGGTTGCCACTAAGTG+GGG + Chr6:109406357-109406376 MsG0680035617.01.T01:three_prime_UTR 55.0%
CTTCGCCAATGCATCCGCAT+GGG - Chr6:109404817-109404836 None:intergenic 55.0%
GCCGGAACGCCATGAAAGAA+CGG - Chr6:109403233-109403252 None:intergenic 55.0%
GGAAAAGCTGAGCGAGTGGA+AGG + Chr6:109406162-109406181 MsG0680035617.01.T01:CDS 55.0%
GGACACTGACGTGTAGGACA+CGG + Chr6:109404051-109404070 MsG0680035617.01.T01:intron 55.0%
GGGAACACCACAAGAGTGAG+TGG + Chr6:109407659-109407678 MsG0680035617.01.T01:three_prime_UTR 55.0%
GTCTGGACCTAAGCCTACTG+AGG + Chr6:109407570-109407589 MsG0680035617.01.T01:three_prime_UTR 55.0%
GTTAGTGTGCGACACACACG+TGG - Chr6:109403793-109403812 None:intergenic 55.0%
GTTCTCCCATGCGGATGCAT+TGG + Chr6:109404809-109404828 MsG0680035617.01.T01:intron 55.0%
TCCAATCCCACACCCACATG+CGG + Chr6:109406843-109406862 MsG0680035617.01.T01:three_prime_UTR 55.0%
TCTTCGCCAATGCATCCGCA+TGG - Chr6:109404818-109404837 None:intergenic 55.0%
! GCGGATGCATTGGCGAAGAT+TGG + Chr6:109404819-109404838 MsG0680035617.01.T01:intron 55.0%
! GCTTGTGCCACTCACTCTTG+TGG - Chr6:109407669-109407688 None:intergenic 55.0%
! GTGTAGCAGGGCATCCTTGT+TGG - Chr6:109404728-109404747 None:intergenic 55.0%
!! CCCTTGGATTAGTCGGTCCT+TGG - Chr6:109406822-109406841 None:intergenic 55.0%
!! GCACCGACTCGTCTGATTGA+AGG - Chr6:109403837-109403856 None:intergenic 55.0%
!! GCATGGTTGGCCTTGTTAGC+TGG + Chr6:109406899-109406918 MsG0680035617.01.T01:three_prime_UTR 55.0%
!! GTGTAAGGGCGCTTAGTCTC+GGG - Chr6:109405876-109405895 None:intergenic 55.0%
!! GTTCTTTGGGGCAATGGTGC+AGG - Chr6:109407499-109407518 None:intergenic 55.0%
!! TCAGACGAGTCGGTGCTGTA+AGG + Chr6:109403841-109403860 MsG0680035617.01.T01:intron 55.0%
AATCCCACACCCACATGCGG+GGG + Chr6:109406846-109406865 MsG0680035617.01.T01:three_prime_UTR 60.0%
CAATCCCACACCCACATGCG+GGG + Chr6:109406845-109406864 MsG0680035617.01.T01:three_prime_UTR 60.0%
CCAATCCCACACCCACATGC+GGG + Chr6:109406844-109406863 MsG0680035617.01.T01:three_prime_UTR 60.0%
GGGTTGCCACTAAGTGGGGT+TGG + Chr6:109406361-109406380 MsG0680035617.01.T01:three_prime_UTR 60.0%
ATCCCACACCCACATGCGGG+GGG + Chr6:109406847-109406866 MsG0680035617.01.T01:three_prime_UTR 65.0%
CCCGCATGTGGGTGTGGGAT+TGG - Chr6:109406847-109406866 None:intergenic 65.0%
GCAGCAGCGCGTACCCTCAA+TGG - Chr6:109406115-109406134 None:intergenic 65.0%
GGGTGTGGGATTGGACCCCT+TGG - Chr6:109406838-109406857 None:intergenic 65.0%
AACCCCCACCCCCCGCATGT+GGG - Chr6:109406858-109406877 None:intergenic 70.0%
ACACCCACATGCGGGGGGTG+GGG + Chr6:109406852-109406871 MsG0680035617.01.T01:three_prime_UTR 70.0%
CACACCCACATGCGGGGGGT+GGG + Chr6:109406851-109406870 MsG0680035617.01.T01:three_prime_UTR 70.0%
CACCCCCCGCATGTGGGTGT+GGG - Chr6:109406852-109406871 None:intergenic 70.0%
ACGCGCTGCTGCCCCTGAGG+AGG + Chr6:109406123-109406142 MsG0680035617.01.T01:CDS 75.0%
CAACCCCCACCCCCCGCATG+TGG - Chr6:109406859-109406878 None:intergenic 75.0%
CACCCACATGCGGGGGGTGG+GGG + Chr6:109406853-109406872 MsG0680035617.01.T01:three_prime_UTR 75.0%
CCACACCCACATGCGGGGGG+TGG + Chr6:109406850-109406869 MsG0680035617.01.T01:three_prime_UTR 75.0%
CCACCCCCCGCATGTGGGTG+TGG - Chr6:109406853-109406872 None:intergenic 75.0%
GGTACGCGCTGCTGCCCCTG+AGG + Chr6:109406120-109406139 MsG0680035617.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr6 gene 109403026 109408445 109403026 ID=MsG0680035617.01;Name=MsG0680035617.01
Chr6 mRNA 109403026 109408445 109403026 ID=MsG0680035617.01.T01;Parent=MsG0680035617.01;Name=MsG0680035617.01.T01;_AED=0.24;_eAED=0.24;_QI=95|0.75|0.4|1|1|1|5|2130|213
Chr6 exon 109403026 109403254 109403026 ID=MsG0680035617.01.T01:exon:14598;Parent=MsG0680035617.01.T01
Chr6 exon 109403337 109403466 109403337 ID=MsG0680035617.01.T01:exon:14599;Parent=MsG0680035617.01.T01
Chr6 exon 109405770 109405825 109405770 ID=MsG0680035617.01.T01:exon:14600;Parent=MsG0680035617.01.T01
Chr6 exon 109405902 109405968 109405902 ID=MsG0680035617.01.T01:exon:14601;Parent=MsG0680035617.01.T01
Chr6 exon 109406061 109408445 109406061 ID=MsG0680035617.01.T01:exon:14602;Parent=MsG0680035617.01.T01
Chr6 five_prime_UTR 109403026 109403120 109403026 ID=MsG0680035617.01.T01:five_prime_utr;Parent=MsG0680035617.01.T01
Chr6 CDS 109403121 109403254 109403121 ID=MsG0680035617.01.T01:cds;Parent=MsG0680035617.01.T01
Chr6 CDS 109403337 109403466 109403337 ID=MsG0680035617.01.T01:cds;Parent=MsG0680035617.01.T01
Chr6 CDS 109405770 109405825 109405770 ID=MsG0680035617.01.T01:cds;Parent=MsG0680035617.01.T01
Chr6 CDS 109405902 109405968 109405902 ID=MsG0680035617.01.T01:cds;Parent=MsG0680035617.01.T01
Chr6 CDS 109406061 109406315 109406061 ID=MsG0680035617.01.T01:cds;Parent=MsG0680035617.01.T01
Chr6 three_prime_UTR 109406316 109408445 109406316 ID=MsG0680035617.01.T01:three_prime_utr;Parent=MsG0680035617.01.T01
Gene Sequence

>MsG0680035617.01.T01

ATGTCTCGTTCATTGGTTCAACCAGTAGGTCAAAAGCGATTAACAAACGTAGCAGTTGTTCGTCTCAAGAAACACGGCATGCGTTTCGAAATCGCTTGTTACCCTAACACCGTTCTTTCATGGCGTTCCGGCGTTGAAAAGGATATTGATGAAGTGTTGCAGTCACATACGGTTTATACGAATGTTTCCAAAGGTGTTCTTGCTAAGTCTAAGGATTTGAATGCGGCGTTTGGTACTGATGATCATTCCAGTATTTGCTTAGAGATTTTAAAGAAAGGGGAACTTCAGGTTGCTGGTAAAGAGGGAGTCAATGCTGTCTACATGATTGAACGCCTCATGAGGGATATCCATTTCGCTGTTGATCAAACAGCAGCCTCCAAGAAGCAGGCTCTGGAGTTGATTCAGGAGCTTCAGAAGCACTACCCTATAAAACGGTGTCCATTGAGGGTACGCGCTGCTGCCCCTGAGGAGGAAGTACCTATCCTTTTGGAAAAGCTGAGCGAGTGGAAGGCAACCGTTATTTCTAAAGAAGGGACAGCTGCTCAGCTATCTGTTGTAAGTTCTTTGTGTTGCTCAGTTATTTCATGGTTCCATTTTATTCTCTGTAACCCTGGGTTTTCTGTTCTAGAAGCATTGTTATAG
Protein sequence

>MsG0680035617.01.T01

MSRSLVQPVGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYTNVSKGVLAKSKDLNAAFGTDDHSSICLEILKKGELQVAGKEGVNAVYMIERLMRDIHFAVDQTAASKKQALELIQELQKHYPIKRCPLRVRAAAPEEEVPILLEKLSEWKATVISKEGTAAQLSVVSSLCCSVISWFHFILCNPGFSVLEALL*