AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046395.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046395.01.T01 MTR_4g107350 87.941 340 7 4 1 339 1 307 0.0 586
MsG0880046395.01.T01 MTR_4g114060 50.420 119 29 2 220 338 155 243 4.81e-33 123
MsG0880046395.01.T01 MTR_8g104900 48.438 128 34 3 214 339 34 131 6.77e-31 114
MsG0880046395.01.T01 MTR_1g031880 47.200 125 34 3 217 339 51 145 1.04e-25 100
MsG0880046395.01.T01 MTR_4g120150 37.838 111 37 3 223 333 51 129 2.18e-15 72.4
MsG0880046395.01.T01 MTR_2g101850 34.746 118 46 3 216 332 2 89 2.63e-14 68.2
MsG0880046395.01.T01 MTR_8g464690 59.574 47 18 1 286 332 44 89 2.75e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046395.01.T01 AT5G20110 51.261 119 28 2 220 338 118 206 3.55e-33 122
MsG0880046395.01.T01 AT1G23220 71.154 52 14 1 288 339 77 127 8.51e-22 89.7
MsG0880046395.01.T01 AT3G16120 35.345 116 45 2 219 334 6 91 3.21e-14 68.2
MsG0880046395.01.T01 AT3G16120 35.345 116 45 2 219 334 6 91 3.21e-14 68.2
MsG0880046395.01.T01 AT4G15930 36.207 116 42 4 219 334 40 123 1.02e-13 67.4
MsG0880046395.01.T01 AT4G27360 58.000 50 20 1 286 335 44 92 2.43e-11 60.5

Find 78 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGATTTCTTTGCAATTAA+TGG 0.142399 8:-72806447 MsG0880046395.01.T01:CDS
TTTGAGGAGGTTTCACTTTA+AGG 0.163123 8:+72806682 None:intergenic
ATCAAATCTTGGTTTGGTTT+TGG 0.235547 8:+72806942 None:intergenic
TGTATTGTGGGGACTAGTTT+TGG 0.238004 8:-72805610 MsG0880046395.01.T01:CDS
GTACAGCAGTCTTAAATATA+AGG 0.257882 8:+72805524 None:intergenic
GGAGAGAGTTTCTGTTTCTA+TGG 0.258173 8:-72806529 MsG0880046395.01.T01:CDS
GAGGGATAATGCTAGGGTTT+TGG 0.302500 8:+72806329 None:intergenic
TGCGGGTCAATGATTGATTT+AGG 0.306526 8:-72806468 MsG0880046395.01.T01:CDS
TTGAGGAGGTTTCACTTTAA+GGG 0.324669 8:+72806683 None:intergenic
ATTGGAAAAGTGGAAACTTC+AGG 0.346164 8:-72806646 MsG0880046395.01.T01:CDS
TGTTTGGTGGGTGTTGTTGT+TGG 0.366216 8:+72806767 None:intergenic
GGTCAAAGTGGTGGTGGTGG+TGG 0.389013 8:-72806507 MsG0880046395.01.T01:CDS
GTTTGGTGGGTGTTGTTGTT+GGG 0.396439 8:+72806768 None:intergenic
GAAATATTGCAGGAATTTGA+TGG 0.396694 8:-72805655 MsG0880046395.01.T01:CDS
CAAACGTGTGTCAACATGTT+TGG 0.400535 8:+72806836 None:intergenic
AAAGGTGGTTGAGGATGTTA+AGG 0.409778 8:-72806604 MsG0880046395.01.T01:CDS
AAAAGAAGGTGGTGATGTTA+AGG 0.409989 8:-72806550 MsG0880046395.01.T01:CDS
CAGGAATTTGATGGGGTGTA+TGG 0.421928 8:-72805646 MsG0880046395.01.T01:CDS
GCTTGAATCAAATCTTGGTT+TGG 0.433215 8:+72806936 None:intergenic
TAGTAGCTTGAATCAAATCT+TGG 0.435025 8:+72806931 None:intergenic
GTTGTTGAAGAATGAGAAAA+AGG 0.446134 8:-72806622 MsG0880046395.01.T01:CDS
TTTGGTTTGAGAATGTTGTT+TGG 0.446853 8:+72806854 None:intergenic
GAATGATTGGTCAATGAATT+CGG 0.455274 8:-72805689 MsG0880046395.01.T01:CDS
ATGGGTCAAAGTGGTGGTGG+TGG 0.459217 8:-72806510 MsG0880046395.01.T01:CDS
TTGGAAAAGTGGAAACTTCA+GGG 0.459465 8:-72806645 MsG0880046395.01.T01:CDS
AGGATTTCTATATTTCTCAA+TGG 0.472685 8:-72805563 MsG0880046395.01.T01:CDS
CCTTCTTGAGGGATAATGCT+AGG 0.479039 8:+72806322 None:intergenic
TTTGTGACCCATTCTGTTGG+AGG 0.480594 8:-72805583 MsG0880046395.01.T01:CDS
ACAGCATGGATCTGCATAAA+CGG 0.483580 8:+72806396 None:intergenic
TATGAATTATACCTTCTTGA+GGG 0.489208 8:+72806311 None:intergenic
TTTGGTTGCTTAGCTAAAGC+AGG 0.490079 8:+72807020 None:intergenic
TCATTTGTGACCCATTCTGT+TGG 0.494391 8:-72805586 MsG0880046395.01.T01:CDS
CTTCTTGAGGGATAATGCTA+GGG 0.494928 8:+72806323 None:intergenic
TGTGTGGGTTGAAATATTGC+AGG 0.498286 8:-72805665 MsG0880046395.01.T01:CDS
CCAGCATGGCACTGTATTGT+GGG 0.504817 8:-72805622 MsG0880046395.01.T01:CDS
TAGAAATCCTCCAACAGAAT+GGG 0.505407 8:+72805576 None:intergenic
GAGAGAGTTTCTGTTTCTAT+GGG 0.506756 8:-72806528 MsG0880046395.01.T01:CDS
TGCTTAGCTAAAGCAGGAGG+TGG 0.509007 8:+72807026 None:intergenic
CCTAAGTTAAGACTTTGAAA+AGG 0.512023 8:+72806888 None:intergenic
CTAGTTCAGAATTGGAAAAG+TGG 0.512540 8:-72806656 MsG0880046395.01.T01:CDS
CCGGTGGTGCCGTGTATCGC+CGG 0.514419 8:+72807057 None:intergenic
CATGTTGACACACGTTTGCA+AGG 0.516215 8:-72806831 MsG0880046395.01.T01:CDS
CCGGCGATACACGGCACCAC+CGG 0.518062 8:-72807057 MsG0880046395.01.T01:CDS
TGGTGCCGTGTATCGCCGGC+GGG 0.521359 8:+72807061 None:intergenic
AAATATTGCAGGAATTTGAT+GGG 0.521597 8:-72805654 MsG0880046395.01.T01:CDS
TTCTTCCCGCCGGCGATACA+CGG 0.523446 8:-72807066 MsG0880046395.01.T01:CDS
TGTATCGCCGGCGGGAAGAA+CGG 0.531167 8:+72807069 None:intergenic
GTCAATGAATTCGGTTGTGT+GGG 0.533231 8:-72805680 MsG0880046395.01.T01:CDS
TCTATGGGTCAAAGTGGTGG+TGG 0.537716 8:-72806513 MsG0880046395.01.T01:CDS
CCCACAATACAGTGCCATGC+TGG 0.538117 8:+72805622 None:intergenic
GTAGAAGAAAATCGCTATGC+GGG 0.539099 8:-72806485 MsG0880046395.01.T01:CDS
TTTGGATAGGGAGAAGGTGA+AGG 0.543280 8:+72806960 None:intergenic
GGTCAATGAATTCGGTTGTG+TGG 0.543512 8:-72805681 MsG0880046395.01.T01:CDS
ATATGAATTATACCTTCTTG+AGG 0.545883 8:+72806310 None:intergenic
ATAGAAATCCTCCAACAGAA+TGG 0.547634 8:+72805575 None:intergenic
AAATATAGCTGAGGTTGTCA+TGG 0.552151 8:+72806803 None:intergenic
GCAGGAGGTGGATTTGTCTC+CGG 0.556923 8:+72807038 None:intergenic
TTCTAGCACAATCAACAGCA+TGG 0.575374 8:+72806382 None:intergenic
GTTTCTATGGGTCAAAGTGG+TGG 0.577482 8:-72806516 MsG0880046395.01.T01:CDS
ACCAGCATGGCACTGTATTG+TGG 0.577524 8:-72805623 MsG0880046395.01.T01:CDS
CCTAGCATTATCCCTCAAGA+AGG 0.579726 8:-72806322 MsG0880046395.01.T01:intron
TGAAGGTGATGATGAGAAGA+TGG 0.583761 8:+72806977 None:intergenic
GTCAAGAAAAGTAACTGTTG+TGG 0.586769 8:-72806574 MsG0880046395.01.T01:CDS
GTGGTGCCGTGTATCGCCGG+CGG 0.601144 8:+72807060 None:intergenic
TCTGTTTCTATGGGTCAAAG+TGG 0.611585 8:-72806519 MsG0880046395.01.T01:CDS
TGATGAATCAAATATAGCTG+AGG 0.614815 8:+72806794 None:intergenic
GGAGGTGGATTTGTCTCCGG+TGG 0.623941 8:+72807041 None:intergenic
TGGCACACCGTTCTTCCCGC+CGG 0.632791 8:-72807076 MsG0880046395.01.T01:CDS
GGTTGCTTAGCTAAAGCAGG+AGG 0.641795 8:+72807023 None:intergenic
CAGCATGGCACTGTATTGTG+GGG 0.649093 8:-72805621 MsG0880046395.01.T01:CDS
TGGAAAAGTGGAAACTTCAG+GGG 0.656471 8:-72806644 MsG0880046395.01.T01:CDS
GGTGTGCCATGTTGAATAGA+CGG 0.676331 8:+72807090 None:intergenic
AGGTGATGATGAGAAGATGG+TGG 0.684245 8:+72806980 None:intergenic
TTTGCACCGTCTATTCAACA+TGG 0.687135 8:-72807096 MsG0880046395.01.T01:exon
AATATTGCAGGAATTTGATG+GGG 0.687792 8:-72805653 MsG0880046395.01.T01:CDS
GGTAGAAGAAAATCGCTATG+CGG 0.688226 8:-72806486 MsG0880046395.01.T01:CDS
GCATGGATCTGCATAAACGG+TGG 0.717762 8:+72806399 None:intergenic
ATGGGGTGTATGGACCAGCA+TGG 0.734479 8:-72805636 MsG0880046395.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAAATCATTATAAACG+TGG - Chr8:72806847-72806866 MsG0880046395.01.T01:CDS 20.0%
!! TTTGCATTAGGAATAATTTA+GGG - Chr8:72806876-72806895 MsG0880046395.01.T01:CDS 20.0%
!!! AGTTTTGAATGAATTGATTA+TGG - Chr8:72806435-72806454 MsG0880046395.01.T01:CDS 20.0%
!!! ATGTAGACAAAATTTGATTT+GGG + Chr8:72806663-72806682 None:intergenic 20.0%
!!! CGTTTATAATGATTTTCTTT+AGG + Chr8:72806847-72806866 None:intergenic 20.0%
!!! TCAAATCATTTTGCTAAATT+TGG + Chr8:72806773-72806792 None:intergenic 20.0%
!!! TGAATATTTTAGTGAATGAT+TGG - Chr8:72806925-72806944 MsG0880046395.01.T01:CDS 20.0%
!!! TTATAATGATTTTCTTTAGG+AGG + Chr8:72806844-72806863 None:intergenic 20.0%
!!! TTTTGCATTAGGAATAATTT+AGG - Chr8:72806875-72806894 MsG0880046395.01.T01:CDS 20.0%
! AAATATTGCAGGAATTTGAT+GGG - Chr8:72806973-72806992 MsG0880046395.01.T01:CDS 25.0%
! AGGATTTCTATATTTCTCAA+TGG - Chr8:72807064-72807083 MsG0880046395.01.T01:CDS 25.0%
! ATATGAATTATACCTTCTTG+AGG + Chr8:72806320-72806339 None:intergenic 25.0%
! CATGTAGACAAAATTTGATT+TGG + Chr8:72806664-72806683 None:intergenic 25.0%
! TATGAATTATACCTTCTTGA+GGG + Chr8:72806319-72806338 None:intergenic 25.0%
!! TCATTTTGCTAAATTTGGAT+CGG + Chr8:72806768-72806787 None:intergenic 25.0%
!! TTAGTACTGTGATTTTTGTT+TGG + Chr8:72805879-72805898 None:intergenic 25.0%
!!! ACACTATCTTTTTCATGATT+TGG + Chr8:72805904-72805923 None:intergenic 25.0%
!!! ACTTACATTCAAGTCATTTT+GGG + Chr8:72806687-72806706 None:intergenic 25.0%
!!! TAGAAAAGCTTTTGATAGTA+TGG - Chr8:72806263-72806282 MsG0880046395.01.T01:intron 25.0%
AATATTGCAGGAATTTGATG+GGG - Chr8:72806974-72806993 MsG0880046395.01.T01:CDS 30.0%
GAAATATTGCAGGAATTTGA+TGG - Chr8:72806972-72806991 MsG0880046395.01.T01:CDS 30.0%
GGTGATTTCTTTGCAATTAA+TGG - Chr8:72806180-72806199 MsG0880046395.01.T01:intron 30.0%
GTACAGCAGTCTTAAATATA+AGG + Chr8:72807106-72807125 None:intergenic 30.0%
GTGTATGTTTGAATTTAGTG+TGG - Chr8:72806705-72806724 MsG0880046395.01.T01:CDS 30.0%
GTTGTTGAAGAATGAGAAAA+AGG - Chr8:72806005-72806024 MsG0880046395.01.T01:intron 30.0%
TAGTAGCTTGAATCAAATCT+TGG + Chr8:72805699-72805718 None:intergenic 30.0%
TCAAAAACCTAGTTCAGAAT+TGG - Chr8:72805963-72805982 MsG0880046395.01.T01:intron 30.0%
TGATGAATCAAATATAGCTG+AGG + Chr8:72805836-72805855 None:intergenic 30.0%
TGCAATTAATGGAGCAAAAA+TGG - Chr8:72806191-72806210 MsG0880046395.01.T01:intron 30.0%
! AATTCTGAACTAGGTTTTTG+AGG + Chr8:72805964-72805983 None:intergenic 30.0%
! ATTTTGCTAAATTTGGATCG+GGG + Chr8:72806766-72806785 None:intergenic 30.0%
! CACTTACATTCAAGTCATTT+TGG + Chr8:72806688-72806707 None:intergenic 30.0%
! CATTTTGCTAAATTTGGATC+GGG + Chr8:72806767-72806786 None:intergenic 30.0%
! CCTAAGTTAAGACTTTGAAA+AGG + Chr8:72805742-72805761 None:intergenic 30.0%
! CCTTTTCAAAGTCTTAACTT+AGG - Chr8:72805739-72805758 MsG0880046395.01.T01:intron 30.0%
! GAATGATTGGTCAATGAATT+CGG - Chr8:72806938-72806957 MsG0880046395.01.T01:CDS 30.0%
! GTTAGACTAGACACTTTTAT+CGG - Chr8:72806513-72806532 MsG0880046395.01.T01:CDS 30.0%
! TTAGACTAGACACTTTTATC+GGG - Chr8:72806514-72806533 MsG0880046395.01.T01:CDS 30.0%
!! TACTGTGATTTTTGTTTGGT+GGG + Chr8:72805875-72805894 None:intergenic 30.0%
!! TTTGGTTTGAGAATGTTGTT+TGG + Chr8:72805776-72805795 None:intergenic 30.0%
!!! ATCAAATCTTGGTTTGGTTT+TGG + Chr8:72805688-72805707 None:intergenic 30.0%
AAATATAGCTGAGGTTGTCA+TGG + Chr8:72805827-72805846 None:intergenic 35.0%
ACATACGCTAAAGTCATCTA+AGG + Chr8:72806587-72806606 None:intergenic 35.0%
ATAGAAATCCTCCAACAGAA+TGG + Chr8:72807055-72807074 None:intergenic 35.0%
ATCTAAGGACCACTAAAACT+CGG + Chr8:72806572-72806591 None:intergenic 35.0%
ATTGGAAAAGTGGAAACTTC+AGG - Chr8:72805981-72806000 MsG0880046395.01.T01:intron 35.0%
CCTAGTTCAATTGACAATGT+CGG - Chr8:72806486-72806505 MsG0880046395.01.T01:CDS 35.0%
CTAGTTCAGAATTGGAAAAG+TGG - Chr8:72805971-72805990 MsG0880046395.01.T01:intron 35.0%
GCTTGAATCAAATCTTGGTT+TGG + Chr8:72805694-72805713 None:intergenic 35.0%
GTAACTGTTGTGGAAAAAGA+AGG - Chr8:72806063-72806082 MsG0880046395.01.T01:intron 35.0%
GTCAAGAAAAGTAACTGTTG+TGG - Chr8:72806053-72806072 MsG0880046395.01.T01:intron 35.0%
GTTGAAGAATGAGAAAAAGG+TGG - Chr8:72806008-72806027 MsG0880046395.01.T01:intron 35.0%
TAGAAATCCTCCAACAGAAT+GGG + Chr8:72807054-72807073 None:intergenic 35.0%
TATGTTGACGAGAGAATGAT+TGG - Chr8:72806602-72806621 MsG0880046395.01.T01:CDS 35.0%
TTGAGGAGGTTTCACTTTAA+GGG + Chr8:72805947-72805966 None:intergenic 35.0%
TTGGAAAAGTGGAAACTTCA+GGG - Chr8:72805982-72806001 MsG0880046395.01.T01:intron 35.0%
TTTGAGGAGGTTTCACTTTA+AGG + Chr8:72805948-72805967 None:intergenic 35.0%
! AAAAGAAGGTGGTGATGTTA+AGG - Chr8:72806077-72806096 MsG0880046395.01.T01:intron 35.0%
! CACTTTTCCAATTCTGAACT+AGG + Chr8:72805973-72805992 None:intergenic 35.0%
!! ACGTGGTTTACTTTTGCATT+AGG - Chr8:72806864-72806883 MsG0880046395.01.T01:CDS 35.0%
!! GAGAGAGTTTCTGTTTCTAT+GGG - Chr8:72806099-72806118 MsG0880046395.01.T01:intron 35.0%
!! GTACTGTGATTTTTGTTTGG+TGG + Chr8:72805876-72805895 None:intergenic 35.0%
!!! ATCTTGGTTTGGTTTTGGAT+AGG + Chr8:72805683-72805702 None:intergenic 35.0%
!!! TCTTGGTTTGGTTTTGGATA+GGG + Chr8:72805682-72805701 None:intergenic 35.0%
AAAGGTGGTTGAGGATGTTA+AGG - Chr8:72806023-72806042 MsG0880046395.01.T01:intron 40.0%
ACAGCATGGATCTGCATAAA+CGG + Chr8:72806234-72806253 None:intergenic 40.0%
ACTGTTGTGGAAAAAGAAGG+TGG - Chr8:72806066-72806085 MsG0880046395.01.T01:intron 40.0%
CAAACGTGTGTCAACATGTT+TGG + Chr8:72805794-72805813 None:intergenic 40.0%
CCGACATTGTCAATTGAACT+AGG + Chr8:72806489-72806508 None:intergenic 40.0%
CTTCTTGAGGGATAATGCTA+GGG + Chr8:72806307-72806326 None:intergenic 40.0%
GAATGAGAAAAAGGTGGTTG+AGG - Chr8:72806014-72806033 MsG0880046395.01.T01:intron 40.0%
GGTAGAAGAAAATCGCTATG+CGG - Chr8:72806141-72806160 MsG0880046395.01.T01:intron 40.0%
GTAGAAGAAAATCGCTATGC+GGG - Chr8:72806142-72806161 MsG0880046395.01.T01:intron 40.0%
GTCAATGAATTCGGTTGTGT+GGG - Chr8:72806947-72806966 MsG0880046395.01.T01:CDS 40.0%
TCATTTGTGACCCATTCTGT+TGG - Chr8:72807041-72807060 MsG0880046395.01.T01:CDS 40.0%
TGGAAAAGTGGAAACTTCAG+GGG - Chr8:72805983-72806002 MsG0880046395.01.T01:intron 40.0%
TTCTAGCACAATCAACAGCA+TGG + Chr8:72806248-72806267 None:intergenic 40.0%
TTTGCACCGTCTATTCAACA+TGG - Chr8:72805531-72805550 MsG0880046395.01.T01:CDS 40.0%
TTTGGTTGCTTAGCTAAAGC+AGG + Chr8:72805610-72805629 None:intergenic 40.0%
! ATGGTGGTTTTTGTAGTGGT+GGG + Chr8:72805634-72805653 None:intergenic 40.0%
! TGAAGGTGATGATGAGAAGA+TGG + Chr8:72805653-72805672 None:intergenic 40.0%
! TGCGGGTCAATGATTGATTT+AGG - Chr8:72806159-72806178 MsG0880046395.01.T01:intron 40.0%
! TGTGTGGGTTGAAATATTGC+AGG - Chr8:72806962-72806981 MsG0880046395.01.T01:CDS 40.0%
! TTTTATCGGGTTCGAACCAA+GGG - Chr8:72806527-72806546 MsG0880046395.01.T01:CDS 40.0%
!! GAAGATGGTGGTTTTTGTAG+TGG + Chr8:72805638-72805657 None:intergenic 40.0%
!! GGAGAGAGTTTCTGTTTCTA+TGG - Chr8:72806098-72806117 MsG0880046395.01.T01:intron 40.0%
!! TCTGAACTAGGTTTTTGAGG+AGG + Chr8:72805961-72805980 None:intergenic 40.0%
!! TCTGTTTCTATGGGTCAAAG+TGG - Chr8:72806108-72806127 MsG0880046395.01.T01:intron 40.0%
!!! GTTTTTGTAGTGGTGGGTTT+TGG + Chr8:72805628-72805647 None:intergenic 40.0%
!!! TGTATTGTGGGGACTAGTTT+TGG - Chr8:72807017-72807036 MsG0880046395.01.T01:CDS 40.0%
!!! TTTGGTTTTGGATAGGGAGA+AGG + Chr8:72805676-72805695 None:intergenic 40.0%
CAGGAATTTGATGGGGTGTA+TGG - Chr8:72806981-72807000 MsG0880046395.01.T01:CDS 45.0%
CATGTTGACACACGTTTGCA+AGG - Chr8:72805796-72805815 MsG0880046395.01.T01:intron 45.0%
CCTAGCATTATCCCTCAAGA+AGG - Chr8:72806305-72806324 MsG0880046395.01.T01:intron 45.0%
CCTTCTTGAGGGATAATGCT+AGG + Chr8:72806308-72806327 None:intergenic 45.0%
GGTCAATGAATTCGGTTGTG+TGG - Chr8:72806946-72806965 MsG0880046395.01.T01:CDS 45.0%
GGTGTGCCATGTTGAATAGA+CGG + Chr8:72805540-72805559 None:intergenic 45.0%
GTTTCTATGGGTCAAAGTGG+TGG - Chr8:72806111-72806130 MsG0880046395.01.T01:intron 45.0%
TTTGGATAGGGAGAAGGTGA+AGG + Chr8:72805670-72805689 None:intergenic 45.0%
TTTGTGACCCATTCTGTTGG+AGG - Chr8:72807044-72807063 MsG0880046395.01.T01:CDS 45.0%
! AGGTGATGATGAGAAGATGG+TGG + Chr8:72805650-72805669 None:intergenic 45.0%
! CTTTTATCGGGTTCGAACCA+AGG - Chr8:72806526-72806545 MsG0880046395.01.T01:CDS 45.0%
! GAGGGATAATGCTAGGGTTT+TGG + Chr8:72806301-72806320 None:intergenic 45.0%
!! GATGGTGGTTTTTGTAGTGG+TGG + Chr8:72805635-72805654 None:intergenic 45.0%
!! GTTTGGTGGGTGTTGTTGTT+GGG + Chr8:72805862-72805881 None:intergenic 45.0%
!! TAGCTGTGTCCGAGTTTTAG+TGG - Chr8:72806560-72806579 MsG0880046395.01.T01:CDS 45.0%
!! TGTTTGGTGGGTGTTGTTGT+TGG + Chr8:72805863-72805882 None:intergenic 45.0%
ACCAGCATGGCACTGTATTG+TGG - Chr8:72807004-72807023 MsG0880046395.01.T01:CDS 50.0%
CAGCATGGCACTGTATTGTG+GGG - Chr8:72807006-72807025 MsG0880046395.01.T01:CDS 50.0%
CCAGCATGGCACTGTATTGT+GGG - Chr8:72807005-72807024 MsG0880046395.01.T01:CDS 50.0%
GCATGGATCTGCATAAACGG+TGG + Chr8:72806231-72806250 None:intergenic 50.0%
GGTTGCTTAGCTAAAGCAGG+AGG + Chr8:72805607-72805626 None:intergenic 50.0%
TCTATGGGTCAAAGTGGTGG+TGG - Chr8:72806114-72806133 MsG0880046395.01.T01:intron 50.0%
TGCTTAGCTAAAGCAGGAGG+TGG + Chr8:72805604-72805623 None:intergenic 50.0%
ATCGGGTTCGAACCAAGGGT+AGG - Chr8:72806531-72806550 MsG0880046395.01.T01:CDS 55.0%
ATGGGGTGTATGGACCAGCA+TGG - Chr8:72806991-72807010 MsG0880046395.01.T01:CDS 55.0%
CAGCTACAAGACCCTACCCT+TGG + Chr8:72806546-72806565 None:intergenic 55.0%
CCCACAATACAGTGCCATGC+TGG + Chr8:72807008-72807027 None:intergenic 55.0%
TCGGGTTCGAACCAAGGGTA+GGG - Chr8:72806532-72806551 MsG0880046395.01.T01:CDS 55.0%
! GCAGGAGGTGGATTTGTCTC+CGG + Chr8:72805592-72805611 None:intergenic 55.0%
!! ATGGGTCAAAGTGGTGGTGG+TGG - Chr8:72806117-72806136 MsG0880046395.01.T01:intron 55.0%
TGTATCGCCGGCGGGAAGAA+CGG + Chr8:72805561-72805580 None:intergenic 60.0%
TTCTTCCCGCCGGCGATACA+CGG - Chr8:72805561-72805580 MsG0880046395.01.T01:CDS 60.0%
! GGAGGTGGATTTGTCTCCGG+TGG + Chr8:72805589-72805608 None:intergenic 60.0%
!! GGTCAAAGTGGTGGTGGTGG+TGG - Chr8:72806120-72806139 MsG0880046395.01.T01:intron 60.0%
TGGCACACCGTTCTTCCCGC+CGG - Chr8:72805551-72805570 MsG0880046395.01.T01:CDS 65.0%
CCGGCGATACACGGCACCAC+CGG - Chr8:72805570-72805589 MsG0880046395.01.T01:CDS 70.0%
!! CCGGTGGTGCCGTGTATCGC+CGG + Chr8:72805573-72805592 None:intergenic 70.0%
!! GTGGTGCCGTGTATCGCCGG+CGG + Chr8:72805570-72805589 None:intergenic 70.0%
!! TGGTGCCGTGTATCGCCGGC+GGG + Chr8:72805569-72805588 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 72805510 72807139 72805510 ID=MsG0880046395.01;Name=MsG0880046395.01
Chr8 mRNA 72805510 72807139 72805510 ID=MsG0880046395.01.T01;Parent=MsG0880046395.01;Name=MsG0880046395.01.T01;_AED=0.30;_eAED=0.31;_QI=40|0|0.5|1|0|0|2|0|339
Chr8 exon 72805510 72805752 72805510 ID=MsG0880046395.01.T01:exon:11563;Parent=MsG0880046395.01.T01
Chr8 exon 72806323 72807139 72806323 ID=MsG0880046395.01.T01:exon:11562;Parent=MsG0880046395.01.T01
Chr8 five_prime_UTR 72807100 72807139 72807100 ID=MsG0880046395.01.T01:five_prime_utr;Parent=MsG0880046395.01.T01
Chr8 CDS 72806323 72807099 72806323 ID=MsG0880046395.01.T01:cds;Parent=MsG0880046395.01.T01
Chr8 CDS 72805510 72805752 72805510 ID=MsG0880046395.01.T01:cds;Parent=MsG0880046395.01.T01
Gene Sequence

>MsG0880046395.01.T01

ATGGCACACCGTTCTTCCCGCCGGCGATACACGGCACCACCGGAGACAAATCCACCTCCTGCTTTAGCTAAGCAACCAAAACCCACCACTACAAAAACCACCATCTTCTCATCATCACCTTCACCTTCTCCCTATCCAAAACCAAACCAAGATTTGATTCAAGCTACTAAATCTTCTTTTTTAGTTAAACCTTTTCAAAGTCTTAACTTAGGTAGCAAAAAAACCAAACAACATTCTCAAACCAAACATGTTGACACACGTTTGCAAGGTAAATCCATGACAACCTCAGCTATATTTGATTCATCAAAACCCAACAACAACACCCACCAAACAAAAATCACAGTACTAACACCAAATCATGAAAAAGATAGTGTTTTTTTGCATTCTAAGAGAACCCTTAAAGTGAAACCTCCTCAAAAACCTAGTTCAGAATTGGAAAAGTGGAAACTTCAGGGGTTGTTGAAGAATGAGAAAAAGGTGGTTGAGGATGTTAAGGTTGAAAAGTCAAGAAAAGTAACTGTTGTGGAAAAAGAAGGTGGTGATGTTAAGGAGAGAGTTTCTGTTTCTATGGGTCAAAGTGGTGGTGGTGGTGGTAGAAGAAAATCGCTATGCGGGTCAATGATTGATTTAGGTGATTTCTTTGCAATTAATGGAGCAAAAATGGTTTCAGCTGATATGCCACCGTTTATGCAGATCCATGCTGTTGATTGTGCTAGAAAAGCTTTTGATAGTATGGAGAAATTCACTTCCAAAACCCTAGCATTATCCCTCAAGAAGGGTGTAATTCAAAATTTGAGTGAGTCATTGAATATTTTAGTGAATGATTGGTCAATGAATTCGGTTGTGTGGGTTGAAATATTGCAGGAATTTGATGGGGTGTATGGACCAGCATGGCACTGTATTGTGGGGACTAGTTTTGGATCATTTGTGACCCATTCTGTTGGAGGATTTCTATATTTCTCAATGGATCAAAAATTGTACATCCTTATATTTAAGACTGCTGTACAAAAAGCAGATTGA

Protein sequence

>MsG0880046395.01.T01

MAHRSSRRRYTAPPETNPPPALAKQPKPTTTKTTIFSSSPSPSPYPKPNQDLIQATKSSFLVKPFQSLNLGSKKTKQHSQTKHVDTRLQGKSMTTSAIFDSSKPNNNTHQTKITVLTPNHEKDSVFLHSKRTLKVKPPQKPSSELEKWKLQGLLKNEKKVVEDVKVEKSRKVTVVEKEGGDVKERVSVSMGQSGGGGGRRKSLCGSMIDLGDFFAINGAKMVSADMPPFMQIHAVDCARKAFDSMEKFTSKTLALSLKKGVIQNLSESLNILVNDWSMNSVVWVEILQEFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILIFKTAVQKAD*