AlfalfaGEDB | MsG0680035653.01

M. sativa cultivar ZhongmuNo.1 / MsG0680035653.01

KEGG: K07407
GO: GO:0003824 GO:0004553 GO:0005975
PFAM: PF16499 PF17450

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035653.01.T01	XP_013453078.3	97.549	408	9	1	1	407	1	408	0	818

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035653.01.T01	P14749	81.127	408	66	2	5	405	7	410	0	696

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035653.01.T01	A0A072UCB8	97.059	408	11	1	1	407	1	408	0.0	816

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0680035653.01	MsG0780039438.01	PPI
MsG0780039439.01	MsG0680035653.01	PPI

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035653.01.T01	MTR_6g086625	97.059	408	11	1	1	407	1	408	0.0	816
MsG0680035653.01.T01	MTR_6g086575	93.612	407	26	0	1	407	1	407	0.0	789
MsG0680035653.01.T01	MTR_1g077480	90.338	414	33	1	1	407	1	414	0.0	771
MsG0680035653.01.T01	MTR_1g077520	81.034	406	73	2	2	404	3	407	0.0	697
MsG0680035653.01.T01	MTR_6g069140	77.778	387	80	1	24	404	33	419	0.0	639
MsG0680035653.01.T01	MTR_1g077520	81.081	333	59	2	2	331	3	334	0.0	577
MsG0680035653.01.T01	MTR_7g073640	60.848	401	152	4	7	404	9	407	0.0	511
MsG0680035653.01.T01	MTR_7g073650	63.255	381	137	3	27	404	26	406	0.0	510
MsG0680035653.01.T01	MTR_3g094160	62.264	371	135	3	41	407	59	428	5.59e-176	498
MsG0680035653.01.T01	MTR_1g078410	62.911	213	20	3	1	206	1	161	2.36e-82	250

Showing 1 to 10 of 22 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035653.01.T01	AT5G08370	72.678	366	100	0	42	407	31	396	0.0	585
MsG0680035653.01.T01	AT5G08370	72.678	366	100	0	42	407	5	370	0.0	583
MsG0680035653.01.T01	AT5G08380	59.606	406	159	3	3	404	4	408	0.0	513
MsG0680035653.01.T01	AT3G56310	58.531	422	155	7	2	405	11	430	3.73e-176	498
MsG0680035653.01.T01	AT3G56310	54.976	422	146	8	2	405	11	406	1.27e-157	451
MsG0680035653.01.T01	AT5G08380	61.022	313	120	1	3	313	4	316	1.19e-144	414
MsG0680035653.01.T01	AT3G26380	25.788	349	169	12	51	312	42	387	5.40e-21	95.1
MsG0680035653.01.T01	AT3G26380	25.788	349	169	12	51	312	42	387	9.73e-21	95.1

Showing 1 to 8 of 8 entries

Previous1Next

Find 120 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATATATACCTGTATCT+CGG	0.565473	6:+110069861	None:intergenic
AAACGTATGCCTGGATCACT+AGG	0.565228	6:-110069078	MsG0680035653.01.T01:CDS
AAATAGGCCCCTTTATTAGT+TGG	0.414998	6:-110068031	MsG0680035653.01.T01:intron
AAATGGAGGCATGACAACAG+AGG	0.691145	6:-110068177	MsG0680035653.01.T01:CDS
AAGAGTTATATGTTGCAAAA+TGG	0.307994	6:-110070122	MsG0680035653.01.T01:CDS
AAGCCTTATTAAAATCGGGA+AGG	0.639835	6:-110068732	MsG0680035653.01.T01:CDS
AAGGCTTCAACGTTTCCTTC+AGG	0.495513	6:-110069252	MsG0680035653.01.T01:CDS
AATAAGGCTTCACTCATTGG+TGG	0.521866	6:+110068745	None:intergenic
AATAGATGTAAATGACAAAT+GGG	0.464657	6:-110068364	MsG0680035653.01.T01:CDS
AATATTACATAACCTTATAG+TGG	0.508180	6:+110070310	None:intergenic

Showing 1 to 10 of 120 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACATTAATGACACATACG+AGG	+	Chr6:110069138-110069157	None:intergenic	30.0%
AATTGATATACTTGTACCCT+AGG	+	Chr6:110067656-110067675	None:intergenic	30.0%
ACTCATTCATTGATCCTAAA+GGG	-	Chr6:110070196-110070215	MsG0680035653.01.T01:CDS	30.0%
AGTATATCAATTTAGGTAGG+TGG	-	Chr6:110067664-110067683	MsG0680035653.01.T01:intron	30.0%
AGTGATCAACAATCATATTC+AGG	+	Chr6:110068236-110068255	None:intergenic	30.0%
ATGGTATAAGTGTTAGAGAA+AGG	-	Chr6:110068496-110068515	MsG0680035653.01.T01:intron	30.0%
ATTGATATACTTGTACCCTA+GGG	+	Chr6:110067655-110067674	None:intergenic	30.0%
CAAAAGCAACAATGATTTAG+AGG	-	Chr6:110069546-110069565	MsG0680035653.01.T01:intron	30.0%
CAAATACATTTAAAAGCCCA+TGG	+	Chr6:110070291-110070310	None:intergenic	30.0%
CAATAATAACAAAGTAGCAG+TGG	-	Chr6:110069822-110069841	MsG0680035653.01.T01:intron	30.0%

Showing 1 to 10 of 184 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	110067048	110070340	110067048	ID=MsG0680035653.01;Name=MsG0680035653.01
Chr6	mRNA	110067048	110070340	110067048	ID=MsG0680035653.01.T01;Parent=MsG0680035653.01;Name=MsG0680035653.01.T01;_AED=0.47;_eAED=0.47;_QI=82\|0.92\|0.86\|1\|1\|1\|15\|216\|407
Chr6	exon	110067048	110067356	110067048	ID=MsG0680035653.01.T01:exon:8805;Parent=MsG0680035653.01.T01
Chr6	exon	110067443	110067583	110067443	ID=MsG0680035653.01.T01:exon:8804;Parent=MsG0680035653.01.T01
Chr6	exon	110067821	110067870	110067821	ID=MsG0680035653.01.T01:exon:8803;Parent=MsG0680035653.01.T01
Chr6	exon	110067957	110068047	110067957	ID=MsG0680035653.01.T01:exon:8802;Parent=MsG0680035653.01.T01
Chr6	exon	110068139	110068221	110068139	ID=MsG0680035653.01.T01:exon:8801;Parent=MsG0680035653.01.T01
Chr6	exon	110068334	110068398	110068334	ID=MsG0680035653.01.T01:exon:8800;Parent=MsG0680035653.01.T01
Chr6	exon	110068538	110068621	110068538	ID=MsG0680035653.01.T01:exon:8799;Parent=MsG0680035653.01.T01
Chr6	exon	110068706	110068771	110068706	ID=MsG0680035653.01.T01:exon:8798;Parent=MsG0680035653.01.T01
Chr6	exon	110068871	110068929	110068871	ID=MsG0680035653.01.T01:exon:8797;Parent=MsG0680035653.01.T01
Chr6	exon	110069041	110069116	110069041	ID=MsG0680035653.01.T01:exon:8796;Parent=MsG0680035653.01.T01
Chr6	exon	110069186	110069289	110069186	ID=MsG0680035653.01.T01:exon:8795;Parent=MsG0680035653.01.T01
Chr6	exon	110069454	110069488	110069454	ID=MsG0680035653.01.T01:exon:8794;Parent=MsG0680035653.01.T01
Chr6	exon	110069710	110069766	110069710	ID=MsG0680035653.01.T01:exon:8793;Parent=MsG0680035653.01.T01
Chr6	exon	110069873	110069931	110069873	ID=MsG0680035653.01.T01:exon:8792;Parent=MsG0680035653.01.T01
Chr6	exon	110070098	110070340	110070098	ID=MsG0680035653.01.T01:exon:8791;Parent=MsG0680035653.01.T01
Chr6	five_prime_UTR	110070259	110070340	110070259	ID=MsG0680035653.01.T01:five_prime_utr;Parent=MsG0680035653.01.T01
Chr6	CDS	110070098	110070258	110070098	ID=MsG0680035653.01.T01:cds;Parent=MsG0680035653.01.T01
Chr6	CDS	110069873	110069931	110069873	ID=MsG0680035653.01.T01:cds;Parent=MsG0680035653.01.T01
Chr6	CDS	110069710	110069766	110069710	ID=MsG0680035653.01.T01:cds;Parent=MsG0680035653.01.T01
Chr6	CDS	110069454	110069488	110069454	ID=MsG0680035653.01.T01:cds;Parent=MsG0680035653.01.T01
Chr6	CDS	110069186	110069289	110069186	ID=MsG0680035653.01.T01:cds;Parent=MsG0680035653.01.T01
Chr6	CDS	110069041	110069116	110069041	ID=MsG0680035653.01.T01:cds;Parent=MsG0680035653.01.T01
Chr6	CDS	110068871	110068929	110068871	ID=MsG0680035653.01.T01:cds;Parent=MsG0680035653.01.T01
Chr6	CDS	110068706	110068771	110068706	ID=MsG0680035653.01.T01:cds;Parent=MsG0680035653.01.T01
Chr6	CDS	110068538	110068621	110068538	ID=MsG0680035653.01.T01:cds;Parent=MsG0680035653.01.T01
Chr6	CDS	110068334	110068398	110068334	ID=MsG0680035653.01.T01:cds;Parent=MsG0680035653.01.T01
Chr6	CDS	110068139	110068221	110068139	ID=MsG0680035653.01.T01:cds;Parent=MsG0680035653.01.T01
Chr6	CDS	110067957	110068047	110067957	ID=MsG0680035653.01.T01:cds;Parent=MsG0680035653.01.T01
Chr6	CDS	110067821	110067870	110067821	ID=MsG0680035653.01.T01:cds;Parent=MsG0680035653.01.T01
Chr6	CDS	110067443	110067583	110067443	ID=MsG0680035653.01.T01:cds;Parent=MsG0680035653.01.T01
Chr6	CDS	110067264	110067356	110067264	ID=MsG0680035653.01.T01:cds;Parent=MsG0680035653.01.T01
Chr6	three_prime_UTR	110067048	110067263	110067048	ID=MsG0680035653.01.T01:three_prime_utr;Parent=MsG0680035653.01.T01

Gene Sequence

>MsG0680035653.01.T01

ATGGTTAGATTGATGGTGCTTGCATTTTTTATCCTTGTGTTGCTGAATATTATTGCAAGTGTTCCGTCATCTTCAGCTGCTCGATTATTAGGAAACAACAATGTAACCAAAATTAAGAGTTATATGTTGCAAAATGGACTTGGTCAGACACCTCCCATGGGATGGAATAGTTGGAACCATTTCGGCTGTGATATAAATGAAAGTTTAATCCGAGATACAGCTGATGCGATGGTGTCAACTGGACTTGCTGCCCTAGGGTACAAGTATATCAATTTAGATGATTGTTGGGCAGAACTTAATCGAGACTCACAGGGAAATATGGTTCCCAAGGCTTCAACGTTTCCTTCAGGAATTAAAGCTCTAGCTCATTATATTCATCGGAAAGGCTTGAAGTTGGGAATTTATTCAGATGCCGGAAATCAAACTTGTAGTAAACGTATGCCTGGATCACTAGGACATGAAATACAAGATGCCAAAACATTTGCTTCTTGGGGAGTCGATTATTTGAAGTATGATAATTGTGAAAATAATGGTATAAGTGTTAGAGAAAGGTATCCACCAATGAGTGAAGCCTTATTAAAATCGGGAAGGTCAATCTTCTTCTCTATGTGTGAATGGGGATGGGAAGATCCAGCAACATGGGCCAAAAGTGTGGGAAATAGTTGGAGAACAACAGGAGATATTGAAGATAACTGGAATAGCATGACTTCTATAATAGATGTAAATGACAAATGGGCATCTTATGCTGGACCTGGAGGATGGAATGATCCTGATATGCTCGAAGTTGGAAATGGAGGCATGACAACAGAGGAATATCGTGCCCATTTCAGCATTTGGGCATTAGCTAAGGCCCCTTTATTAGTTGGTTGTAATATTCAAGCAATGGATAATATCACGTATGAATTGATAAGCAACTCTGAAGTTATTGTAGTAAACCAAGATAAACTTGGAGTTCAGGGAAAGAAAGTCAAAAGCAACAATGATTTAGAGGTTTGGGCAGGTCCTCTCAATAATAACAAAGTAGCAGTGGTCTTATGGAATAGAAGTTCATCAAATGCAACGGTAACTGCATCCTGGTCAGATATAGGTCTGAAATCAGGAACTATAGTTGATGCAAGAGATTTATGGGAGCACTCAACACAATCATTGGTTTCTGGAGAAATCTCTGCTGAGTTAGATTCACATGCCTGCAAGATGTATGTTCTGACACCTAAAAGGAGTTAA

Protein sequence

>MsG0680035653.01.T01

MVRLMVLAFFILVLLNIIASVPSSSAARLLGNNNVTKIKSYMLQNGLGQTPPMGWNSWNHFGCDINESLIRDTADAMVSTGLAALGYKYINLDDCWAELNRDSQGNMVPKASTFPSGIKALAHYIHRKGLKLGIYSDAGNQTCSKRMPGSLGHEIQDAKTFASWGVDYLKYDNCENNGISVRERYPPMSEALLKSGRSIFFSMCEWGWEDPATWAKSVGNSWRTTGDIEDNWNSMTSIIDVNDKWASYAGPGGWNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLVGCNIQAMDNITYELISNSEVIVVNQDKLGVQGKKVKSNNDLEVWAGPLNNNKVAVVLWNRSSSNATVTASWSDIGLKSGTIVDARDLWEHSTQSLVSGEISAELDSHACKMYVLTPKRS*