AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035662.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035662.01.T03 MTR_1g034430 80.000 60 12 0 1 60 101 160 8.56e-30 103
MsG0680035662.01.T03 MTR_4g008270 63.333 60 22 0 1 60 16 75 4.63e-24 86.3
MsG0680035662.01.T03 MTR_2g059470 62.069 58 22 0 1 58 6 63 2.48e-23 84.0
MsG0680035662.01.T03 MTR_5g075610 69.231 52 16 0 1 52 1 52 1.97e-22 82.4
MsG0680035662.01.T03 MTR_8g031800 61.667 60 23 0 1 60 37 96 1.63e-21 80.5
MsG0680035662.01.T03 MTR_1g074240 54.098 61 28 0 1 61 6 66 2.41e-20 76.3
MsG0680035662.01.T03 MTR_1g088650 56.897 58 25 0 1 58 92 149 2.46e-19 76.6
MsG0680035662.01.T03 MTR_0015s0120 55.172 58 26 0 1 58 299 356 8.88e-19 77.8
MsG0680035662.01.T03 MTR_1g074090 51.724 58 28 0 1 58 87 144 1.81e-17 71.2
MsG0680035662.01.T03 MTR_7g063280 44.068 59 33 0 1 59 78 136 3.15e-17 70.9
MsG0680035662.01.T03 MTR_6g016265 48.276 58 30 0 1 58 45 102 8.39e-17 68.9
MsG0680035662.01.T03 MTR_0093s0070 49.153 59 30 0 1 59 129 187 3.75e-16 68.9
MsG0680035662.01.T03 MTR_6g453270 44.828 58 32 0 1 58 306 363 4.82e-16 70.5
MsG0680035662.01.T03 MTR_7g053400 46.429 56 30 0 1 56 181 236 1.11e-15 68.6
MsG0680035662.01.T03 MTR_5g036320 45.000 60 33 0 1 60 85 144 1.12e-15 66.2
MsG0680035662.01.T03 MTR_5g085210 50.000 58 29 0 1 58 125 182 1.19e-15 68.2
MsG0680035662.01.T03 MTR_8g098925 53.704 54 25 0 1 54 71 124 1.28e-15 66.6
MsG0680035662.01.T03 MTR_1g045560 41.379 58 34 0 1 58 1 58 2.84e-15 63.9
MsG0680035662.01.T03 MTR_8g088220 46.552 58 31 0 3 60 2 59 5.70e-15 62.8
MsG0680035662.01.T03 MTR_8g059135 41.379 58 34 0 1 58 34 91 1.41e-14 63.2
MsG0680035662.01.T03 MTR_1g017840 51.724 58 28 0 1 58 84 141 2.06e-14 63.5
MsG0680035662.01.T03 MTR_5g034450 44.828 58 32 0 1 58 55 112 2.08e-14 62.4
MsG0680035662.01.T03 MTR_1g099430 50.943 53 24 1 1 51 131 183 2.32e-14 64.3
MsG0680035662.01.T03 MTR_6g033225 49.153 59 30 0 1 59 76 134 2.75e-14 62.8
MsG0680035662.01.T03 MTR_1g069475 45.614 57 31 0 2 58 171 227 4.38e-14 63.9
MsG0680035662.01.T03 MTR_8g036780 51.020 49 24 0 1 49 40 88 4.96e-14 61.2
MsG0680035662.01.T03 MTR_1g050488 46.552 58 31 0 1 58 104 161 6.73e-14 62.4
MsG0680035662.01.T03 MTR_5g049680 38.095 63 39 0 1 63 37 99 1.25e-13 60.1
MsG0680035662.01.T03 MTR_5g037920 50.000 58 28 1 1 58 104 160 1.36e-13 62.4
MsG0680035662.01.T03 MTR_2g027020 49.123 57 25 1 2 58 35 87 3.58e-13 60.8
MsG0680035662.01.T03 MTR_6g016135 39.655 58 35 0 1 58 385 442 6.12e-13 61.6
MsG0680035662.01.T03 MTR_3g116210 41.379 58 34 0 1 58 103 160 7.72e-13 60.1
MsG0680035662.01.T03 MTR_7g013520 44.262 61 34 0 1 61 76 136 9.28e-13 59.7
MsG0680035662.01.T03 MTR_5g091440 42.857 56 32 0 1 56 1 56 1.27e-12 58.2
MsG0680035662.01.T03 MTR_6g089560 46.296 54 29 0 1 54 122 175 1.62e-12 59.7
MsG0680035662.01.T03 MTR_8g099580 46.296 54 29 0 1 54 212 265 2.03e-12 60.1
MsG0680035662.01.T03 MTR_1g022215 51.020 49 24 0 1 49 20 68 4.44e-12 55.8
MsG0680035662.01.T03 MTR_1g062840 54.762 42 19 0 17 58 2 43 5.11e-12 55.8
MsG0680035662.01.T03 MTR_5g069700 53.488 43 20 0 16 58 2 44 9.41e-12 54.7
MsG0680035662.01.T03 MTR_8g038340 46.154 52 28 0 1 52 195 246 1.07e-11 57.8
MsG0680035662.01.T03 MTR_5g083200 41.379 58 34 0 1 58 104 161 1.45e-11 56.6
MsG0680035662.01.T03 MTR_0002s1220 41.379 58 34 0 1 58 104 161 1.45e-11 56.6
MsG0680035662.01.T03 MTR_6g034915 41.379 58 34 0 1 58 61 118 2.06e-11 55.8
MsG0680035662.01.T03 MTR_3g111390 41.379 58 34 0 1 58 104 161 2.17e-11 56.2
MsG0680035662.01.T03 MTR_1g070820 41.379 58 34 0 1 58 104 161 2.17e-11 56.2
MsG0680035662.01.T03 MTR_1g045340 39.655 58 35 0 1 58 90 147 3.05e-11 55.5
MsG0680035662.01.T03 MTR_6g016355 40.741 54 32 0 3 56 124 177 3.36e-11 55.5
MsG0680035662.01.T03 MTR_7g072030 45.455 44 24 0 15 58 69 112 6.71e-11 53.5
MsG0680035662.01.T03 MTR_3g026270 32.727 55 37 0 1 55 1 55 9.38e-11 52.0
MsG0680035662.01.T02 MTR_1g034430 77.953 127 28 0 23 149 34 160 8.36e-69 206
MsG0680035662.01.T02 MTR_6g453270 42.949 156 80 3 1 147 208 363 1.57e-42 145
MsG0680035662.01.T02 MTR_8g031080 48.855 131 58 1 1 122 197 327 1.29e-38 135
MsG0680035662.01.T02 MTR_8g031800 60.215 93 37 0 57 149 4 96 6.88e-35 118
MsG0680035662.01.T02 MTR_4g046027 47.619 126 42 3 1 126 68 169 1.22e-34 119
MsG0680035662.01.T02 MTR_1g054905 39.552 134 74 2 1 127 11 144 2.16e-31 110
MsG0680035662.01.T02 MTR_1g050488 39.735 151 68 2 1 147 30 161 2.54e-31 110
MsG0680035662.01.T02 MTR_1g088650 49.541 109 47 2 47 147 41 149 4.44e-31 110
MsG0680035662.01.T02 MTR_5g049680 48.936 94 48 0 59 152 6 99 5.46e-31 107
MsG0680035662.01.T02 MTR_1g099430 53.846 91 40 1 52 140 93 183 9.48e-31 110
MsG0680035662.01.T02 MTR_4g029360 39.735 151 88 1 1 148 41 191 1.06e-30 110
MsG0680035662.01.T02 MTR_6g016265 52.941 85 40 0 63 147 18 102 1.98e-30 107
MsG0680035662.01.T02 MTR_5g036320 51.136 88 43 0 62 149 57 144 2.72e-30 107
MsG0680035662.01.T02 MTR_8g039080 45.455 121 55 1 1 121 25 134 7.85e-30 108
MsG0680035662.01.T02 MTR_8g028785 39.103 156 62 2 1 147 190 321 9.99e-30 111
MsG0680035662.01.T02 MTR_8g036780 51.807 83 40 0 56 138 6 88 1.29e-29 104
MsG0680035662.01.T02 MTR_1g017840 39.416 137 73 2 13 147 13 141 6.16e-29 104
MsG0680035662.01.T02 MTR_1g074090 52.941 85 40 0 63 147 60 144 9.35e-29 103
MsG0680035662.01.T02 MTR_7g013520 37.931 145 74 3 6 150 8 136 1.24e-28 104
MsG0680035662.01.T02 MTR_6g046670 35.211 142 85 1 3 137 35 176 2.17e-28 103
MsG0680035662.01.T02 MTR_0015s0120 56.962 79 34 0 69 147 278 356 8.82e-28 105
MsG0680035662.01.T02 MTR_2g017550 36.184 152 77 3 2 136 12 160 1.72e-27 100
MsG0680035662.01.T02 MTR_1g087480 41.379 116 61 2 1 116 112 220 2.11e-27 102
MsG0680035662.01.T02 MTR_6g075220 61.446 83 18 1 10 92 1 69 4.39e-27 97.4
MsG0680035662.01.T02 MTR_1g081930 51.111 90 44 0 58 147 12 101 1.07e-26 97.8
MsG0680035662.01.T02 MTR_5g085210 37.931 145 86 2 4 147 41 182 1.09e-26 100
MsG0680035662.01.T02 MTR_4g035890 42.982 114 58 3 4 117 41 147 1.20e-26 98.2
MsG0680035662.01.T02 MTR_4g094370 63.380 71 26 0 56 126 7 77 2.11e-26 95.5
MsG0680035662.01.T02 MTR_8g038340 40.909 110 65 0 32 141 137 246 8.56e-26 98.6
MsG0680035662.01.T02 MTR_7g053400 35.862 145 66 4 1 145 119 236 9.73e-26 98.6
MsG0680035662.01.T02 MTR_6g089560 49.383 81 41 0 63 143 95 175 2.76e-25 97.1
MsG0680035662.01.T02 MTR_2g102247 44.660 103 50 2 1 103 53 148 5.55e-25 94.0
MsG0680035662.01.T02 MTR_8g099580 38.400 125 69 1 27 143 141 265 5.60e-25 97.8
MsG0680035662.01.T02 MTR_4g008270 63.077 65 24 0 85 149 11 75 6.40e-25 92.0
MsG0680035662.01.T02 MTR_8g022750 40.136 147 32 4 1 147 161 251 9.73e-25 96.7
MsG0680035662.01.T02 MTR_2g059470 61.290 62 24 0 86 147 2 63 2.13e-24 90.5
MsG0680035662.01.T02 MTR_3g116210 37.600 125 69 1 23 147 45 160 3.75e-24 92.8
MsG0680035662.01.T02 MTR_5g083200 39.048 105 64 0 43 147 57 161 3.79e-24 93.2
MsG0680035662.01.T02 MTR_0002s1220 39.048 105 64 0 43 147 57 161 3.79e-24 93.2
MsG0680035662.01.T02 MTR_4g023580 35.938 128 57 2 1 128 61 163 5.61e-24 91.7
MsG0680035662.01.T02 MTR_1g069475 44.086 93 52 0 55 147 135 227 8.31e-24 93.6
MsG0680035662.01.T02 MTR_5g034450 49.367 79 40 0 69 147 34 112 1.30e-23 89.4
MsG0680035662.01.T02 MTR_3g111390 34.815 135 85 1 13 147 30 161 1.83e-23 91.3
MsG0680035662.01.T02 MTR_1g070820 34.815 135 85 1 13 147 30 161 1.83e-23 91.3
MsG0680035662.01.T02 MTR_3g462490 47.674 86 43 1 57 140 74 159 3.64e-23 94.4
MsG0680035662.01.T02 MTR_5g037920 48.810 84 42 1 64 147 78 160 1.80e-22 89.4
MsG0680035662.01.T02 MTR_2g027020 48.235 85 40 1 63 147 7 87 3.35e-22 87.8
MsG0680035662.01.T02 MTR_1g045340 36.066 122 72 1 26 147 32 147 3.59e-22 87.4
MsG0680035662.01.T02 MTR_5g075610 69.231 52 16 0 90 141 1 52 1.63e-21 83.6
MsG0680035662.01.T02 MTR_4g094272 35.772 123 60 3 13 130 31 139 5.52e-21 83.2
MsG0680035662.01.T02 MTR_5g068115 50.794 63 31 0 56 118 6 68 2.90e-20 79.3
MsG0680035662.01.T02 MTR_7g063280 46.875 64 34 0 84 147 72 135 5.12e-20 81.6
MsG0680035662.01.T02 MTR_1g074240 52.308 65 31 0 86 150 2 66 8.28e-20 78.6
MsG0680035662.01.T02 MTR_8g079540 41.111 90 53 0 57 146 21 110 9.79e-20 79.7
MsG0680035662.01.T02 MTR_6g033225 48.750 80 41 0 69 148 55 134 1.50e-19 79.7
MsG0680035662.01.T02 MTR_8g098925 40.777 103 39 2 41 143 44 124 1.84e-19 80.1
MsG0680035662.01.T02 MTR_6g045427 28.750 160 76 3 1 150 80 211 4.71e-19 80.9
MsG0680035662.01.T02 MTR_7g078610 50.794 63 31 0 63 125 30 92 1.26e-18 75.9
MsG0680035662.01.T02 MTR_6g016355 41.026 78 46 0 68 145 100 177 1.66e-18 78.2
MsG0680035662.01.T02 MTR_1g022215 49.254 67 34 0 72 138 2 68 4.55e-18 74.3
MsG0680035662.01.T02 MTR_7g006380 53.571 56 26 0 63 118 45 100 5.73e-18 76.6
MsG0680035662.01.T02 MTR_0093s0070 35.433 127 64 3 22 147 77 186 1.18e-17 76.3
MsG0680035662.01.T02 MTR_2g047100 47.500 80 27 1 68 147 2 66 1.91e-17 73.2
MsG0680035662.01.T02 MTR_8g045330 37.634 93 58 0 36 128 49 141 3.31e-17 73.9
MsG0680035662.01.T02 MTR_1g018300 44.706 85 41 1 63 147 42 120 5.38e-16 72.8
MsG0680035662.01.T02 MTR_6g034915 34.234 111 43 1 67 147 8 118 1.66e-15 70.1
MsG0680035662.01.T02 MTR_3g085360 30.469 128 63 2 1 128 23 124 5.42e-15 67.4
MsG0680035662.01.T02 MTR_3g064060 55.319 47 21 0 59 105 12 58 1.33e-14 64.7
MsG0680035662.01.T02 MTR_8g059135 41.667 60 35 0 88 147 32 91 2.26e-14 65.9
MsG0680035662.01.T02 MTR_1g109000 41.463 82 48 0 60 141 2 83 2.87e-14 64.7
MsG0680035662.01.T02 MTR_8g088220 48.214 56 29 0 92 147 2 57 3.42e-14 64.3
MsG0680035662.01.T02 MTR_1g045560 41.379 58 34 0 90 147 1 58 4.53e-14 64.3
MsG0680035662.01.T02 MTR_1g103580 37.255 102 49 3 1 96 80 172 1.09e-13 66.6
MsG0680035662.01.T02 MTR_7g036825 36.000 100 55 2 1 99 109 200 1.55e-13 65.9
MsG0680035662.01.T02 MTR_4g046657 60.870 46 17 1 62 106 17 62 2.20e-13 62.0
MsG0680035662.01.T02 MTR_3g102000 31.959 97 64 1 13 107 130 226 3.59e-13 64.7
MsG0680035662.01.T02 MTR_3g060800 61.905 42 16 0 63 104 20 61 9.99e-13 59.7
MsG0680035662.01.T02 MTR_6g016135 35.802 81 49 2 67 147 365 442 2.58e-12 63.5
MsG0680035662.01.T02 MTR_8g069135 59.524 42 17 0 63 104 168 209 3.09e-12 63.2
MsG0680035662.01.T02 MTR_5g056500 31.034 87 60 0 58 144 4 90 5.66e-12 59.3
MsG0680035662.01.T02 MTR_3g010950 35.556 90 45 3 63 139 5 94 9.08e-12 59.3
MsG0680035662.01.T02 MTR_5g091440 42.857 56 32 0 90 145 1 56 1.48e-11 58.5
MsG0680035662.01.T02 MTR_1964s0010 48.889 45 23 0 60 104 45 89 2.19e-11 57.4
MsG0680035662.01.T02 MTR_5g042170 57.778 45 19 0 63 107 29 73 2.87e-11 57.8
MsG0680035662.01.T02 MTR_3g072290 52.381 42 20 0 76 117 3 44 3.12e-11 55.8
MsG0680035662.01.T02 MTR_1g062840 54.762 42 19 0 106 147 2 43 6.62e-11 55.8
MsG0680035662.01.T01 MTR_1g034430 77.953 127 28 0 27 153 34 160 7.85e-69 206
MsG0680035662.01.T01 MTR_6g453270 43.125 160 82 3 1 151 204 363 6.77e-44 149
MsG0680035662.01.T01 MTR_8g031080 48.889 135 60 1 1 126 193 327 2.77e-40 139
MsG0680035662.01.T01 MTR_4g046027 46.923 130 45 3 1 130 64 169 1.02e-35 122
MsG0680035662.01.T01 MTR_8g031800 60.215 93 37 0 61 153 4 96 6.50e-35 118
MsG0680035662.01.T01 MTR_1g050488 39.355 155 71 2 1 151 26 161 1.22e-32 114
MsG0680035662.01.T01 MTR_1g054905 38.406 138 78 2 1 131 7 144 5.60e-32 112
MsG0680035662.01.T01 MTR_8g028785 39.375 160 64 2 1 151 186 321 2.02e-31 115
MsG0680035662.01.T01 MTR_4g029360 39.355 155 91 1 1 152 37 191 2.23e-31 112
MsG0680035662.01.T01 MTR_1g088650 49.541 109 47 2 51 151 41 149 4.38e-31 110
MsG0680035662.01.T01 MTR_5g049680 48.936 94 48 0 63 156 6 99 5.55e-31 108
MsG0680035662.01.T01 MTR_8g039080 44.800 125 58 1 1 125 21 134 6.78e-31 111
MsG0680035662.01.T01 MTR_1g099430 53.846 91 40 1 56 144 93 183 9.45e-31 110
MsG0680035662.01.T01 MTR_6g016265 52.941 85 40 0 67 151 18 102 2.20e-30 107
MsG0680035662.01.T01 MTR_5g036320 51.136 88 43 0 66 153 57 144 2.59e-30 107
MsG0680035662.01.T01 MTR_8g036780 51.807 83 40 0 60 142 6 88 1.14e-29 105
MsG0680035662.01.T01 MTR_1g017840 39.416 137 73 2 17 151 13 141 6.75e-29 104
MsG0680035662.01.T01 MTR_1g074090 52.941 85 40 0 67 151 60 144 9.81e-29 103
MsG0680035662.01.T01 MTR_7g013520 37.931 145 74 3 10 154 8 136 1.19e-28 104
MsG0680035662.01.T01 MTR_6g046670 35.211 142 85 1 7 141 35 176 2.25e-28 103
MsG0680035662.01.T01 MTR_0015s0120 56.962 79 34 0 73 151 278 356 8.29e-28 106
MsG0680035662.01.T01 MTR_1g087480 41.026 117 62 2 4 120 111 220 9.48e-28 103
MsG0680035662.01.T01 MTR_2g017550 35.032 157 82 3 1 140 7 160 1.12e-27 101
MsG0680035662.01.T01 MTR_6g075220 61.446 83 18 1 14 96 1 69 4.89e-27 97.4
MsG0680035662.01.T01 MTR_5g085210 37.931 145 86 2 8 151 41 182 9.97e-27 100
MsG0680035662.01.T01 MTR_4g035890 42.982 114 58 3 8 121 41 147 1.05e-26 98.6
MsG0680035662.01.T01 MTR_1g081930 51.111 90 44 0 62 151 12 101 1.11e-26 97.8
MsG0680035662.01.T01 MTR_8g022750 41.060 151 33 4 1 151 157 251 1.18e-26 101
MsG0680035662.01.T01 MTR_7g053400 36.301 146 66 4 4 149 118 236 2.03e-26 100
MsG0680035662.01.T01 MTR_4g094370 63.380 71 26 0 60 130 7 77 2.46e-26 95.1
MsG0680035662.01.T01 MTR_8g038340 40.909 110 65 0 36 145 137 246 8.33e-26 98.6
MsG0680035662.01.T01 MTR_2g102247 45.192 104 50 2 4 107 52 148 1.29e-25 95.5
MsG0680035662.01.T01 MTR_6g089560 49.383 81 41 0 67 147 95 175 2.86e-25 97.1
MsG0680035662.01.T01 MTR_4g023580 35.606 132 60 2 1 132 57 163 3.72e-25 95.1
MsG0680035662.01.T01 MTR_8g099580 38.400 125 69 1 31 147 141 265 6.07e-25 97.8
MsG0680035662.01.T01 MTR_4g008270 63.077 65 24 0 89 153 11 75 6.31e-25 92.0
MsG0680035662.01.T01 MTR_2g059470 61.290 62 24 0 90 151 2 63 2.36e-24 90.5
MsG0680035662.01.T01 MTR_3g116210 37.600 125 69 1 27 151 45 160 3.95e-24 92.8
MsG0680035662.01.T01 MTR_5g083200 39.048 105 64 0 47 151 57 161 4.50e-24 93.2
MsG0680035662.01.T01 MTR_0002s1220 39.048 105 64 0 47 151 57 161 4.50e-24 93.2
MsG0680035662.01.T01 MTR_1g069475 44.086 93 52 0 59 151 135 227 8.33e-24 93.6
MsG0680035662.01.T01 MTR_5g034450 49.367 79 40 0 73 151 34 112 1.59e-23 89.4
MsG0680035662.01.T01 MTR_3g111390 34.815 135 85 1 17 151 30 161 2.21e-23 91.3
MsG0680035662.01.T01 MTR_1g070820 34.815 135 85 1 17 151 30 161 2.21e-23 91.3
MsG0680035662.01.T01 MTR_3g462490 47.674 86 43 1 61 144 74 159 3.99e-23 94.4
MsG0680035662.01.T01 MTR_5g037920 48.810 84 42 1 68 151 78 160 1.82e-22 89.7
MsG0680035662.01.T01 MTR_2g027020 48.235 85 40 1 67 151 7 87 3.76e-22 87.8
MsG0680035662.01.T01 MTR_1g045340 36.066 122 72 1 30 151 32 147 3.90e-22 87.8
MsG0680035662.01.T01 MTR_5g075610 69.231 52 16 0 94 145 1 52 1.66e-21 83.6
MsG0680035662.01.T01 MTR_4g094272 35.772 123 60 3 17 134 31 139 5.48e-21 83.6
MsG0680035662.01.T01 MTR_5g068115 55.172 58 26 0 65 122 11 68 3.19e-20 79.3
MsG0680035662.01.T01 MTR_6g045427 28.659 164 79 3 1 154 76 211 3.44e-20 84.0
MsG0680035662.01.T01 MTR_7g063280 46.875 64 34 0 88 151 72 135 5.48e-20 82.0
MsG0680035662.01.T01 MTR_1g074240 52.308 65 31 0 90 154 2 66 8.64e-20 78.6
MsG0680035662.01.T01 MTR_8g079540 41.111 90 53 0 61 150 21 110 1.10e-19 79.7
MsG0680035662.01.T01 MTR_6g033225 49.367 79 40 0 73 151 55 133 1.43e-19 79.7
MsG0680035662.01.T01 MTR_8g098925 40.777 103 39 2 45 147 44 124 1.80e-19 80.1
MsG0680035662.01.T01 MTR_7g078610 50.794 63 31 0 67 129 30 92 1.32e-18 75.9
MsG0680035662.01.T01 MTR_6g016355 41.026 78 46 0 72 149 100 177 1.75e-18 78.2
MsG0680035662.01.T01 MTR_1g022215 49.254 67 34 0 76 142 2 68 4.49e-18 74.7
MsG0680035662.01.T01 MTR_7g006380 53.571 56 26 0 67 122 45 100 5.98e-18 76.6
MsG0680035662.01.T01 MTR_0093s0070 35.433 127 64 3 26 151 77 186 1.44e-17 76.3
MsG0680035662.01.T01 MTR_2g047100 47.500 80 27 1 72 151 2 66 1.99e-17 73.2
MsG0680035662.01.T01 MTR_8g045330 37.634 93 58 0 40 132 49 141 3.79e-17 73.9
MsG0680035662.01.T01 MTR_3g085360 31.061 132 65 2 1 132 19 124 3.53e-16 70.9
MsG0680035662.01.T01 MTR_1g018300 44.706 85 41 1 67 151 42 120 5.45e-16 72.8
MsG0680035662.01.T01 MTR_6g034915 34.234 111 43 1 71 151 8 118 1.76e-15 70.1
MsG0680035662.01.T01 MTR_1g103580 37.736 106 51 3 1 100 76 172 3.61e-15 70.9
MsG0680035662.01.T01 MTR_3g064060 55.319 47 21 0 63 109 12 58 1.29e-14 64.7
MsG0680035662.01.T01 MTR_8g059135 41.667 60 35 0 92 151 32 91 2.17e-14 66.2
MsG0680035662.01.T01 MTR_1g109000 41.463 82 48 0 64 145 2 83 3.09e-14 64.7
MsG0680035662.01.T01 MTR_8g088220 48.214 56 29 0 96 151 2 57 3.75e-14 64.3
MsG0680035662.01.T01 MTR_1g045560 41.379 58 34 0 94 151 1 58 4.20e-14 64.3
MsG0680035662.01.T01 MTR_7g036825 34.615 104 59 2 1 103 105 200 5.87e-14 67.0
MsG0680035662.01.T01 MTR_4g046657 60.870 46 17 1 66 110 17 62 2.17e-13 62.4
MsG0680035662.01.T01 MTR_3g102000 31.959 97 64 1 17 111 130 226 4.81e-13 64.7
MsG0680035662.01.T01 MTR_3g060800 61.905 42 16 0 67 108 20 61 9.69e-13 60.1
MsG0680035662.01.T01 MTR_6g016135 35.802 81 49 2 71 151 365 442 2.72e-12 63.5
MsG0680035662.01.T01 MTR_8g069135 59.524 42 17 0 67 108 168 209 3.21e-12 63.2
MsG0680035662.01.T01 MTR_5g056500 31.034 87 60 0 62 148 4 90 5.67e-12 59.3
MsG0680035662.01.T01 MTR_3g010950 35.556 90 45 3 67 143 5 94 8.47e-12 59.3
MsG0680035662.01.T01 MTR_5g091440 42.857 56 32 0 94 149 1 56 1.51e-11 58.5
MsG0680035662.01.T01 MTR_1964s0010 48.889 45 23 0 64 108 45 89 2.03e-11 57.8
MsG0680035662.01.T01 MTR_5g042170 57.778 45 19 0 67 111 29 73 2.82e-11 57.8
MsG0680035662.01.T01 MTR_3g072290 52.381 42 20 0 80 121 3 44 3.17e-11 55.8
MsG0680035662.01.T01 MTR_1g062840 54.762 42 19 0 110 151 2 43 6.20e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 41 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGACAAGAAGAAGATAAT+TGG 0.275581 6:-110285427 MsG0680035662.01.T01:CDS
CCACAATTATGTGGAGTCTT+TGG 0.297532 6:-110285601 MsG0680035662.01.T01:CDS
TGACCTGGGCATGTGCCTTA+TGG 0.333044 6:-110285336 MsG0680035662.01.T01:CDS
GCTTCCAAAGTTTCATGTTC+CGG 0.339468 6:+110285573 None:intergenic
GCACATGTGGTATGGTGGTT+TGG 0.350291 6:+110285456 None:intergenic
TTCTCTTAACAGGGTTGACC+TGG 0.391528 6:-110285351 MsG0680035662.01.T01:CDS
GGCGAGCAACCCAAGTTATT+AGG 0.417222 6:-110285493 MsG0680035662.01.T01:CDS
TGTTGGATTACACACAGCTT+TGG 0.418669 6:-110285240 MsG0680035662.01.T01:CDS
CACATGTGGTATGGTGGTTT+GGG 0.430398 6:+110285457 None:intergenic
TTGCTCGCCATTCTTCTAGA+AGG 0.457078 6:+110285507 None:intergenic
AGAAGATAATTGGAAGAAAC+CGG 0.464562 6:-110285417 MsG0680035662.01.T01:CDS
CATTTATACCTGCCAGGCGC+CGG 0.466296 6:+110285398 None:intergenic
GATTACACACAGCTTTGGAT+TGG 0.471194 6:-110285235 MsG0680035662.01.T01:CDS
GGAAGAAACCGGCGCCTGGC+AGG 0.479803 6:-110285406 MsG0680035662.01.T01:CDS
AGCTGCGAGACCTAATAACT+TGG 0.498531 6:+110285483 None:intergenic
CCTGTTAAGAGAAGTAGAAA+AGG 0.498639 6:+110285361 None:intergenic
CAACTCACCTTCTAGAAGAA+TGG 0.501131 6:-110285514 MsG0680035662.01.T01:CDS
AGAGCCGGAACATGAAACTT+TGG 0.514065 6:-110285577 MsG0680035662.01.T01:CDS
TGTGGAGTCTTTGGAAGAGC+CGG 0.517129 6:-110285592 MsG0680035662.01.T01:CDS
AATTGGAAGAAACCGGCGCC+TGG 0.520344 6:-110285410 MsG0680035662.01.T01:CDS
CCCTCTTTGTGATATAGATG+TGG 0.520993 6:-110285270 MsG0680035662.01.T01:CDS
ATGTTGCATTTATACCTGCC+AGG 0.532181 6:+110285392 None:intergenic
TATAGATCGCACATGTGGTA+TGG 0.539403 6:+110285448 None:intergenic
CATCCATAAGGCACATGCCC+AGG 0.543442 6:+110285333 None:intergenic
AAGCACCATCATCATCCATA+AGG 0.557567 6:+110285321 None:intergenic
CCACATCTATATCACAAAGA+GGG 0.569801 6:+110285270 None:intergenic
CTCTTTGTGATATAGATGTG+GGG 0.570420 6:-110285268 MsG0680035662.01.T01:CDS
TTGTTCTTGCAAGAACGGAA+TGG 0.578159 6:-110285298 MsG0680035662.01.T01:CDS
CCTCTTTGTGATATAGATGT+GGG 0.580156 6:-110285269 MsG0680035662.01.T01:CDS
AACTGATGGCCACAATTATG+TGG 0.583869 6:-110285610 None:intergenic
ATGTGCCTTATGGATGATGA+TGG 0.589491 6:-110285326 MsG0680035662.01.T01:CDS
AGATCGCACATGTGGTATGG+TGG 0.604666 6:+110285451 None:intergenic
CCCACATCTATATCACAAAG+AGG 0.606971 6:+110285269 None:intergenic
TCTTTGTGATATAGATGTGG+GGG 0.611449 6:-110285267 MsG0680035662.01.T01:CDS
ACAGAATGAGACCAACTCAC+AGG 0.612511 6:-110285549 MsG0680035662.01.T01:CDS
CCAAAGACTCCACATAATTG+TGG 0.614049 6:+110285601 None:intergenic
CACATCTATATCACAAAGAG+GGG 0.628604 6:+110285271 None:intergenic
TCTCTTAACAGGGTTGACCT+GGG 0.635997 6:-110285350 MsG0680035662.01.T01:CDS
GCTGCGAGACCTAATAACTT+GGG 0.636021 6:+110285484 None:intergenic
TGTCTTATAGATCGCACATG+TGG 0.642576 6:+110285443 None:intergenic
ACGTTGAAACACCTGTGAGT+TGG 0.683393 6:+110285538 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TAAGACAAGAAGAAGATAAT+TGG - Chr6:110285335-110285354 MsG0680035662.01.T01:CDS 25.0%
AGAAGATAATTGGAAGAAAC+CGG - Chr6:110285345-110285364 MsG0680035662.01.T01:CDS 30.0%
! CTTTTCTACTTCTCTTAACA+GGG - Chr6:110285402-110285421 MsG0680035662.01.T01:CDS 30.0%
CACATCTATATCACAAAGAG+GGG + Chr6:110285494-110285513 None:intergenic 35.0%
CCACATCTATATCACAAAGA+GGG + Chr6:110285495-110285514 None:intergenic 35.0%
CCTCTTTGTGATATAGATGT+GGG - Chr6:110285493-110285512 MsG0680035662.01.T01:CDS 35.0%
CCTGTTAAGAGAAGTAGAAA+AGG + Chr6:110285404-110285423 None:intergenic 35.0%
CTCTTTGTGATATAGATGTG+GGG - Chr6:110285494-110285513 MsG0680035662.01.T01:CDS 35.0%
TCTTTGTGATATAGATGTGG+GGG - Chr6:110285495-110285514 MsG0680035662.01.T01:CDS 35.0%
! CCTTTTCTACTTCTCTTAAC+AGG - Chr6:110285401-110285420 MsG0680035662.01.T01:CDS 35.0%
! TGCTTTTGTTCTTGCAAGAA+CGG - Chr6:110285459-110285478 MsG0680035662.01.T01:CDS 35.0%
AAGCACCATCATCATCCATA+AGG + Chr6:110285444-110285463 None:intergenic 40.0%
ATGTGCCTTATGGATGATGA+TGG - Chr6:110285436-110285455 MsG0680035662.01.T01:CDS 40.0%
ATGTTGCATTTATACCTGCC+AGG + Chr6:110285373-110285392 None:intergenic 40.0%
CCAAAGACTCCACATAATTG+TGG + Chr6:110285164-110285183 None:intergenic 40.0%
CCACAATTATGTGGAGTCTT+TGG - Chr6:110285161-110285180 MsG0680035662.01.T01:CDS 40.0%
CCCACATCTATATCACAAAG+AGG + Chr6:110285496-110285515 None:intergenic 40.0%
CCCTCTTTGTGATATAGATG+TGG - Chr6:110285492-110285511 MsG0680035662.01.T01:CDS 40.0%
GCTTCCAAAGTTTCATGTTC+CGG + Chr6:110285192-110285211 None:intergenic 40.0%
TATAGATCGCACATGTGGTA+TGG + Chr6:110285317-110285336 None:intergenic 40.0%
TGTCTTATAGATCGCACATG+TGG + Chr6:110285322-110285341 None:intergenic 40.0%
TGTTGGATTACACACAGCTT+TGG - Chr6:110285522-110285541 MsG0680035662.01.T01:CDS 40.0%
TTGTTCTTGCAAGAACGGAA+TGG - Chr6:110285464-110285483 MsG0680035662.01.T01:CDS 40.0%
! CAACTCACCTTCTAGAAGAA+TGG - Chr6:110285248-110285267 MsG0680035662.01.T01:CDS 40.0%
!! GATTACACACAGCTTTGGAT+TGG - Chr6:110285527-110285546 MsG0680035662.01.T01:CDS 40.0%
ACAGAATGAGACCAACTCAC+AGG - Chr6:110285213-110285232 MsG0680035662.01.T01:CDS 45.0%
ACGTTGAAACACCTGTGAGT+TGG + Chr6:110285227-110285246 None:intergenic 45.0%
AGAGCCGGAACATGAAACTT+TGG - Chr6:110285185-110285204 MsG0680035662.01.T01:CDS 45.0%
AGCTGCGAGACCTAATAACT+TGG + Chr6:110285282-110285301 None:intergenic 45.0%
CACATGTGGTATGGTGGTTT+GGG + Chr6:110285308-110285327 None:intergenic 45.0%
GCTGCGAGACCTAATAACTT+GGG + Chr6:110285281-110285300 None:intergenic 45.0%
TCTCTTAACAGGGTTGACCT+GGG - Chr6:110285412-110285431 MsG0680035662.01.T01:CDS 45.0%
TTCTCTTAACAGGGTTGACC+TGG - Chr6:110285411-110285430 MsG0680035662.01.T01:CDS 45.0%
TTGCTCGCCATTCTTCTAGA+AGG + Chr6:110285258-110285277 None:intergenic 45.0%
TTGTGATATAGATGTGGGGG+AGG - Chr6:110285498-110285517 MsG0680035662.01.T01:CDS 45.0%
AGATCGCACATGTGGTATGG+TGG + Chr6:110285314-110285333 None:intergenic 50.0%
ATAGATGTGGGGGAGGTTGT+TGG - Chr6:110285505-110285524 MsG0680035662.01.T01:CDS 50.0%
GCACATGTGGTATGGTGGTT+TGG + Chr6:110285309-110285328 None:intergenic 50.0%
GGCGAGCAACCCAAGTTATT+AGG - Chr6:110285269-110285288 MsG0680035662.01.T01:CDS 50.0%
! TGTGGAGTCTTTGGAAGAGC+CGG - Chr6:110285170-110285189 MsG0680035662.01.T01:CDS 50.0%
AATTGGAAGAAACCGGCGCC+TGG - Chr6:110285352-110285371 MsG0680035662.01.T01:CDS 55.0%
CATCCATAAGGCACATGCCC+AGG + Chr6:110285432-110285451 None:intergenic 55.0%
CATTTATACCTGCCAGGCGC+CGG + Chr6:110285367-110285386 None:intergenic 55.0%
TGACCTGGGCATGTGCCTTA+TGG - Chr6:110285426-110285445 MsG0680035662.01.T01:CDS 55.0%
GGAAGAAACCGGCGCCTGGC+AGG - Chr6:110285356-110285375 MsG0680035662.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 110285157 110285627 110285157 ID=MsG0680035662.01;Name=MsG0680035662.01
Chr6 mRNA 110285157 110285627 110285157 ID=MsG0680035662.01.T01;Parent=MsG0680035662.01;Name=MsG0680035662.01.T01;_AED=0.27;_eAED=0.27;_QI=0|-1|0|1|-1|0|1|0|156
Chr6 exon 110285157 110285627 110285157 ID=MsG0680035662.01.T01:exon:8859;Parent=MsG0680035662.01.T01
Chr6 CDS 110285157 110285627 110285157 ID=MsG0680035662.01.T01:cds;Parent=MsG0680035662.01.T01
Chr6 mRNA 110285157 110285615 110285157 ID=MsG0680035662.01.T02;Parent=MsG0680035662.01;Name=MsG0680035662.01.T02;_AED=0.28;_eAED=0.28;_QI=0|-1|0|1|-1|0|1|0|152
Chr6 exon 110285157 110285615 110285157 ID=MsG0680035662.01.T02:exon:8860;Parent=MsG0680035662.01.T02
Chr6 CDS 110285157 110285615 110285157 ID=MsG0680035662.01.T02:cds;Parent=MsG0680035662.01.T02
Chr6 mRNA 110285157 110285348 110285157 ID=MsG0680035662.01.T03;Parent=MsG0680035662.01;Name=MsG0680035662.01.T03;_AED=0.41;_eAED=0.41;_QI=0|-1|0|1|-1|0|1|0|63
Chr6 exon 110285157 110285348 110285157 ID=MsG0680035662.01.T03:exon:8861;Parent=MsG0680035662.01.T03
Chr6 CDS 110285157 110285348 110285157 ID=MsG0680035662.01.T03:cds;Parent=MsG0680035662.01.T03
Gene Sequence

>MsG0680035662.01.T03

ATGTGCCTTATGGATGATGATGGTGCTTTTGTTCTTGCAAGAACGGAATGGTTTGCCCCTCTTTGTGATATAGATGTGGGGGAGGTTGTTGGATTACACACAGCTTTGGATTGGATCTCTAATCAACAGTTTGACAATGTCGATTTTGTTCTTGATTGTAAAAGAATTGTTGATTGTGTCATTCTAGCTTAA

>MsG0680035662.01.T02

ATGTGGAGTCTTTGGAAGAGCCGGAACATGAAACTTTGGAAGCAACAGAATGAGACCAACTCACAGGTGTTTCAACGTGCAACTCACCTTCTAGAAGAATGGCGAGCAACCCAAGTTATTAGGTCTCGCAGCTACACCCAAACCACCATACCACATGTGCGATCTATAAGACAAGAAGAAGATAATTGGAAGAAACCGGCGCCTGGCAGGTATAAATGCAACATTGATGCATCCTTTTCTACTTCTCTTAACAGGGTTGACCTGGGCATGTGCCTTATGGATGATGATGGTGCTTTTGTTCTTGCAAGAACGGAATGGTTTGCCCCTCTTTGTGATATAGATGTGGGGGAGGTTGTTGGATTACACACAGCTTTGGATTGGATCTCTAATCAACAGTTTGACAATGTCGATTTTGTTCTTGATTGTAAAAGAATTGTTGATTGTGTCATTCTAGCTTAA

>MsG0680035662.01.T01

ATGGCCACAATTATGTGGAGTCTTTGGAAGAGCCGGAACATGAAACTTTGGAAGCAACAGAATGAGACCAACTCACAGGTGTTTCAACGTGCAACTCACCTTCTAGAAGAATGGCGAGCAACCCAAGTTATTAGGTCTCGCAGCTACACCCAAACCACCATACCACATGTGCGATCTATAAGACAAGAAGAAGATAATTGGAAGAAACCGGCGCCTGGCAGGTATAAATGCAACATTGATGCATCCTTTTCTACTTCTCTTAACAGGGTTGACCTGGGCATGTGCCTTATGGATGATGATGGTGCTTTTGTTCTTGCAAGAACGGAATGGTTTGCCCCTCTTTGTGATATAGATGTGGGGGAGGTTGTTGGATTACACACAGCTTTGGATTGGATCTCTAATCAACAGTTTGACAATGTCGATTTTGTTCTTGATTGTAAAAGAATTGTTGATTGTGTCATTCTAGCTTAA
Protein sequence

>MsG0680035662.01.T03

MCLMDDDGAFVLARTEWFAPLCDIDVGEVVGLHTALDWISNQQFDNVDFVLDCKRIVDCVILA*

>MsG0680035662.01.T02

MWSLWKSRNMKLWKQQNETNSQVFQRATHLLEEWRATQVIRSRSYTQTTIPHVRSIRQEEDNWKKPAPGRYKCNIDASFSTSLNRVDLGMCLMDDDGAFVLARTEWFAPLCDIDVGEVVGLHTALDWISNQQFDNVDFVLDCKRIVDCVILA*

>MsG0680035662.01.T01

MATIMWSLWKSRNMKLWKQQNETNSQVFQRATHLLEEWRATQVIRSRSYTQTTIPHVRSIRQEEDNWKKPAPGRYKCNIDASFSTSLNRVDLGMCLMDDDGAFVLARTEWFAPLCDIDVGEVVGLHTALDWISNQQFDNVDFVLDCKRIVDCVILA*