AlfalfaGEDB | MsG0780036475.01

M. sativa cultivar ZhongmuNo.1 / MsG0780036475.01

KEGG: K22069
GO: -
PFAM: PF05347

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036475.01.T01	XP_039684049.1	100	92	0	0	3	94	2	93	1.77E-58	184

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036475.01.T01	B5FZA8	37.179	78	49	0	5	82	2	79	2.86E-12	60.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036475.01.T01	G7L496	100.000	92	0	0	3	94	2	93	8.44e-59	184

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0680031130.01	MsG0780036475.01	0.818694	1.714978e-52	1.292779e-49

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036475.01.T01	MTR_7g012870	100.000	92	0	3	94	2	93	2.14e-62	184
MsG0780036475.01.T01	MTR_0287s0050	100.000	92	0	3	94	2	93	2.14e-62	184
MsG0780036475.01.T01	MTR_7g083770	75.641	78	19	17	94	55	132	6.42e-39	126

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036475.01.T01	AT5G61220	47.561	82	43	8	89	3	84	1.29e-23	86.3
MsG0780036475.01.T01	AT5G61220	47.561	82	43	8	89	3	84	1.29e-23	86.3
MsG0780036475.01.T01	AT5G61220	47.561	82	43	8	89	3	84	1.29e-23	86.3

Showing 1 to 3 of 3 entries

Previous1Next

Find 20 sgRNAs with CRISPR-Local

Find 19 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAACCTTGATTAAAA+GGG	0.427832	7:-8669238	None:intergenic
AGCATAAATAGAGTAAACAA+CGG	0.670929	7:-8669179	None:intergenic
AGCGAAGAAGGGTCAGGGTT+TGG	0.302465	7:-8668991	None:intergenic
ATTCGCGTATGTTGTAATCT+GGG	0.539311	7:-8669039	None:intergenic
ATTTCCGAAGCTTTCTCGTT+TGG	0.370472	7:+8669124	MsG0780036475.01.T01:CDS
CCCGTCGACGACTATGGCGG+CGG	0.566090	7:+8668949	None:intergenic
CGCGGATGAAGGAGCGAAGA+AGG	0.438435	7:-8669003	None:intergenic
CTGGGAATTGGCGAGAAACG+CGG	0.581220	7:-8669021	None:intergenic
CTTGATTAAAAGGGTTTATT+AGG	0.211621	7:-8669229	None:intergenic
GAAGGAGCGAAGAAGGGTCA+GGG	0.629779	7:-8668996	None:intergenic

Showing 1 to 10 of 20 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTCGCGTATGTTGTAATCT+GGG	-	Chr7:8669042-8669061	None:intergenic	35.0%
GTATGTTGTAATCTGGGAAT+TGG	-	Chr7:8669036-8669055	None:intergenic	35.0%
TATTCGCGTATGTTGTAATC+TGG	-	Chr7:8669043-8669062	None:intergenic	35.0%
TTAGGAAGATCCATAACACT+TGG	-	Chr7:8669214-8669233	None:intergenic	35.0%
ATTTCCGAAGCTTTCTCGTT+TGG	+	Chr7:8669124-8669143	MsG0780036475.01.T01:CDS	40.0%
TCCATAACACTTGGAAGAGA+AGG	-	Chr7:8669205-8669224	None:intergenic	40.0%
TCCTTCTCTTCCAAGTGTTA+TGG	+	Chr7:8669201-8669220	MsG0780036475.01.T01:CDS	40.0%
AGCGAAGAAGGGTCAGGGTT+TGG	-	Chr7:8668994-8669013	None:intergenic	55.0%
CTGGGAATTGGCGAGAAACG+CGG	-	Chr7:8669024-8669043	None:intergenic	55.0%
GAAGGAGCGAAGAAGGGTCA+GGG	-	Chr7:8668999-8669018	None:intergenic	55.0%

Showing 1 to 10 of 19 entries

Previous1 2Next

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	8668962	8669246	8668962	ID=MsG0780036475.01;Name=MsG0780036475.01
Chr7	mRNA	8668962	8669246	8668962	ID=MsG0780036475.01.T01;Parent=MsG0780036475.01;Name=MsG0780036475.01.T01;_AED=0.47;_eAED=0.47;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|94
Chr7	exon	8668962	8669246	8668962	ID=MsG0780036475.01.T01:exon:1749;Parent=MsG0780036475.01.T01
Chr7	CDS	8668962	8669246	8668962	ID=MsG0780036475.01.T01:cds;Parent=MsG0780036475.01.T01

Gene Sequence	>MsG0780036475.01.T01 ATGGCGGCGGCGGCGACACCTTCAAAATCCCAAACCCTGACCCTTCTTCGCTCCTTCATCCGCGTTTCTCGCCAATTCCCAGATTACAACATACGCGAATACACAAAACGACGCGCCATCGATGCGTTTCGTCAAAACGCAGCACTTTCTGAAGCTTCTTCGATTTCCGAAGCTTTCTCGTTTGGAAAATCTCAGCTTGATGTTGCTAAACGACAAGCCGTTGTTTACTCTATTTATGCTCCTTCTCTTCCAAGTGTTATGGATCTTCCTAATAAACCCTTTTAA
Protein sequence	>MsG0780036475.01.T01 MAAAATPSKSQTLTLLRSFIRVSRQFPDYNIREYTKRRAIDAFRQNAALSEASSISEAFSFGKSQLDVAKRQAVVYSIYAPSLPSVMDLPNKPF*