AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031130.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031130.01.T01 MTR_6g016780 59.036 249 24 3 4 174 100 348 3.56e-88 262
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031130.01.T01 AT3G02420 44.980 249 58 5 4 174 34 281 2.20e-61 191
MsG0680031130.01.T01 AT3G02420 44.980 249 58 5 4 174 101 348 1.19e-60 192

Find 54 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGTAACCAATTTGTATT+TGG 0.119452 6:+14972807 None:intergenic
CAGAGAGTTGAAGTAGATTT+TGG 0.128539 6:-14972789 MsG0680031130.01.T01:three_prime_UTR
CAGAGTGTTTGGGCTAAAAT+TGG 0.183022 6:-14972984 MsG0680031130.01.T01:CDS
TACTCATTGTACTCACAATA+TGG 0.202339 6:-14974922 MsG0680031130.01.T01:CDS
GAAAGATGCTTAGGTATTAT+TGG 0.236013 6:+14974995 None:intergenic
TGTATGCTTAATTGTACTTT+AGG 0.247579 6:-14972723 MsG0680031130.01.T01:three_prime_UTR
CTGCATATCATCAGAGTGTT+TGG 0.292065 6:-14972995 MsG0680031130.01.T01:CDS
GGATCAACTAATAGAACTTC+TGG 0.318218 6:-14975767 MsG0680031130.01.T01:CDS
GAAAGCTGGAAGAAATAAAA+TGG 0.333871 6:-14972634 MsG0680031130.01.T01:three_prime_UTR
AAAGTTGTTATCCATTTCAT+TGG 0.343193 6:-14972866 MsG0680031130.01.T01:three_prime_UTR
TCAAATGACCAACATAAGAT+AGG 0.358140 6:+14974536 None:intergenic
TCCTATTCTCTGTTAATGCT+TGG 0.379431 6:-14975685 MsG0680031130.01.T01:CDS
CAACGCAGAGGAGCTGGATT+AGG 0.399866 6:+14975722 None:intergenic
CCTATTCTCTGTTAATGCTT+GGG 0.409696 6:-14975684 MsG0680031130.01.T01:intron
CAGTTCAAAGATGGTGGTTA+AGG 0.416908 6:-14972902 MsG0680031130.01.T01:CDS
TGTAACCAATTTGTATTTGG+AGG 0.426803 6:+14972810 None:intergenic
CTTTGATCCCTATCTTATGT+TGG 0.428193 6:-14974544 MsG0680031130.01.T01:CDS
TTAAATAATTCTCTGAAAGC+TGG 0.429557 6:-14972648 MsG0680031130.01.T01:three_prime_UTR
TGCATATCATCAGAGTGTTT+GGG 0.433030 6:-14972994 MsG0680031130.01.T01:CDS
CTATCCCAACGCAGAGGAGC+TGG 0.437130 6:+14975716 None:intergenic
TTGGTGCTGTTCCAATGAAA+TGG 0.438897 6:+14972855 None:intergenic
TAATCCAGCTCCTCTGCGTT+GGG 0.441465 6:-14975720 MsG0680031130.01.T01:CDS
TGGTGGTTAAGGTAGAAGTT+TGG 0.445090 6:-14972891 MsG0680031130.01.T01:exon
CCCAAGCATTAACAGAGAAT+AGG 0.445503 6:+14975684 None:intergenic
GGGACATCTGCAACTGCGGC+GGG 0.451005 6:-14975746 MsG0680031130.01.T01:CDS
ACCTAAGCATCTTTCTTCAC+AGG 0.452877 6:-14974987 MsG0680031130.01.T01:CDS
AGCGACTGAAGTTACGTCTA+AGG 0.454751 6:+14974498 None:intergenic
AGAGTGTTTGGGCTAAAATT+GGG 0.465774 6:-14972983 MsG0680031130.01.T01:CDS
ACTCATTGTACTCACAATAT+GGG 0.468328 6:-14974921 MsG0680031130.01.T01:CDS
CTCTATCTGCAGTTCAAAGA+TGG 0.481007 6:-14972911 MsG0680031130.01.T01:CDS
CCCTGTGAAGAAAGATGCTT+AGG 0.484853 6:+14974986 None:intergenic
CTAATCCAGCTCCTCTGCGT+TGG 0.487722 6:-14975721 MsG0680031130.01.T01:CDS
TCAAGAACGGTGCATGGCGG+TGG 0.498167 6:+14972940 None:intergenic
TGGGACATCTGCAACTGCGG+CGG 0.501367 6:-14975747 MsG0680031130.01.T01:CDS
TAATACAAACATTCATGTAC+TGG 0.502893 6:-14974136 MsG0680031130.01.T01:CDS
GATCAACTAATAGAACTTCT+GGG 0.505674 6:-14975766 MsG0680031130.01.T01:CDS
TTCTGGGACATCTGCAACTG+CGG 0.506746 6:-14975750 MsG0680031130.01.T01:CDS
CATCTTTGAACTGCAGATAG+AGG 0.514903 6:+14972912 None:intergenic
TGATGATATGCAGCAGTGAC+AGG 0.518394 6:+14973005 None:intergenic
CCTAAGCATCTTTCTTCACA+GGG 0.528064 6:-14974986 MsG0680031130.01.T01:CDS
CAAATGACCAACATAAGATA+GGG 0.530611 6:+14974537 None:intergenic
ACAAACATTCATGTACTGGC+AGG 0.563596 6:-14974132 MsG0680031130.01.T01:intron
TCAGTCGCTCTACTCTGTAC+AGG 0.566843 6:-14974484 MsG0680031130.01.T01:intron
GAAGTTACGTCTAAGGAACT+TGG 0.575784 6:+14974505 None:intergenic
TTGGGCTAAAATTGGGAGGT+CGG 0.588187 6:-14972976 MsG0680031130.01.T01:CDS
GGTGCATGGCGGTGGATAAG+CGG 0.601838 6:+14972948 None:intergenic
GTGTCTTCAAGAACGGTGCA+TGG 0.608754 6:+14972934 None:intergenic
GATAGAGGTGTCTTCAAGAA+CGG 0.609080 6:+14972927 None:intergenic
CTCATTGTACTCACAATATG+GGG 0.612714 6:-14974920 MsG0680031130.01.T01:intron
GTATTATTGGAACAGCTGCA+AGG 0.638245 6:+14975008 None:intergenic
GTGTTTGGGCTAAAATTGGG+AGG 0.653965 6:-14972980 MsG0680031130.01.T01:CDS
TATCTGCAGTTCAAAGATGG+TGG 0.656529 6:-14972908 MsG0680031130.01.T01:CDS
GTCTGTCTATCCCAACGCAG+AGG 0.692111 6:+14975710 None:intergenic
TCTTCAAGAACGGTGCATGG+CGG 0.725346 6:+14972937 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAATACTTTATATCA+AGG + Chr6:14975008-14975027 None:intergenic 10.0%
!!! AATATTTTTACAAATTCATT+AGG + Chr6:14975251-14975270 None:intergenic 10.0%
!! ATTGTACAAAAATGATTTAT+TGG + Chr6:14972991-14973010 None:intergenic 15.0%
!! ATTTATATAAATATTCCGTA+CGG - Chr6:14974561-14974580 MsG0680031130.01.T01:intron 15.0%
!! TATATTTATACTTTACATCA+AGG + Chr6:14974985-14975004 None:intergenic 15.0%
!!! TTTAATTAAATATTTTCTGC+AGG - Chr6:14973297-14973316 MsG0680031130.01.T01:intron 15.0%
!! AAAACCCATATTAATATGTT+GGG - Chr6:14974309-14974328 MsG0680031130.01.T01:intron 20.0%
!! AAATGATCAGAAATAAAAGT+AGG + Chr6:14972810-14972829 None:intergenic 20.0%
!! TAAAACCCATATTAATATGT+TGG - Chr6:14974308-14974327 MsG0680031130.01.T01:intron 20.0%
!! TAATCCCAACATATTAATAT+GGG + Chr6:14974316-14974335 None:intergenic 20.0%
!! TTAATCAGAATATGTTATGT+GGG + Chr6:14972717-14972736 None:intergenic 20.0%
!! TTAATGTGTTCATTTATCTA+AGG - Chr6:14974441-14974460 MsG0680031130.01.T01:intron 20.0%
!! TTTGTAAAAATATTACCCAA+TGG - Chr6:14975257-14975276 MsG0680031130.01.T01:intron 20.0%
!!! AATTGTTTTTCATATCAATG+AGG - Chr6:14974923-14974942 MsG0680031130.01.T01:CDS 20.0%
!!! ATTGCATGCAATTTTTATTA+GGG - Chr6:14973906-14973925 MsG0680031130.01.T01:intron 20.0%
!!! TATGAAGTATTTTTGAATGA+AGG - Chr6:14974958-14974977 MsG0680031130.01.T01:CDS 20.0%
!!! TTTTTCAATCCTTTTTACTT+GGG + Chr6:14975059-14975078 None:intergenic 20.0%
!!! TTTTTTCAATCCTTTTTACT+TGG + Chr6:14975060-14975079 None:intergenic 20.0%
! AAAAACCAAAACTATTACGT+TGG + Chr6:14973960-14973979 None:intergenic 25.0%
! AAAGAAAAAATCACCTGTTA+AGG + Chr6:14974869-14974888 None:intergenic 25.0%
! AAAGTTGTTATCCATTTCAT+TGG - Chr6:14975478-14975497 MsG0680031130.01.T01:intron 25.0%
! AACAACAACTTCAATAGAAA+AGG + Chr6:14974136-14974155 None:intergenic 25.0%
! ACAACAACTTCAATAGAAAA+GGG + Chr6:14974135-14974154 None:intergenic 25.0%
! AGAGATGGAAATTAGAATTA+GGG - Chr6:14973188-14973207 MsG0680031130.01.T01:intron 25.0%
! CAACTTAACAATCAGAATAA+AGG + Chr6:14974696-14974715 None:intergenic 25.0%
! CTAATCCCAACATATTAATA+TGG + Chr6:14974317-14974336 None:intergenic 25.0%
! CTTAATCAGAATATGTTATG+TGG + Chr6:14972718-14972737 None:intergenic 25.0%
! CTTTATTCTGATTGTTAAGT+TGG - Chr6:14974694-14974713 MsG0680031130.01.T01:intron 25.0%
! GAATATTTCTCTCAATCAAA+CGG + Chr6:14975192-14975211 None:intergenic 25.0%
! TAATACAAACATTCATGTAC+TGG - Chr6:14974208-14974227 MsG0680031130.01.T01:intron 25.0%
! TATTAATATGTTGGGATTAG+CGG - Chr6:14974317-14974336 MsG0680031130.01.T01:intron 25.0%
! TATTCTTTCTCTTGATCTAA+TGG - Chr6:14975207-14975226 MsG0680031130.01.T01:intron 25.0%
! TGATCAAAACATGTTATAGA+AGG + Chr6:14973769-14973788 None:intergenic 25.0%
! TGTATGCTTAATTGTACTTT+AGG - Chr6:14975621-14975640 MsG0680031130.01.T01:intron 25.0%
! TTCAAAAATACTTCATAGCA+AGG + Chr6:14974955-14974974 None:intergenic 25.0%
! TTTGCGCTTATCTTATATAT+TGG - Chr6:14974538-14974557 MsG0680031130.01.T01:CDS 25.0%
!! CATGTGTTGTTCAAAAATAA+GGG + Chr6:14974171-14974190 None:intergenic 25.0%
!! GATTGCATGCAATTTTTATT+AGG - Chr6:14973905-14973924 MsG0680031130.01.T01:intron 25.0%
!! TTAAATAATTCTCTGAAAGC+TGG - Chr6:14975696-14975715 MsG0680031130.01.T01:CDS 25.0%
!! TTGCATGCAATTTTTATTAG+GGG - Chr6:14973907-14973926 MsG0680031130.01.T01:intron 25.0%
!! TTTTACCTCCAAATACAAAT+TGG - Chr6:14975529-14975548 MsG0680031130.01.T01:intron 25.0%
!! TTTTCTATTGAAGTTGTTGT+TGG - Chr6:14974135-14974154 MsG0680031130.01.T01:CDS 25.0%
!!! TTTTGGTTTTTTGCTTCTAT+AGG - Chr6:14973969-14973988 MsG0680031130.01.T01:intron 25.0%
AAAGCACAAAAATGTCTACT+TGG + Chr6:14975511-14975530 None:intergenic 30.0%
AACAGAAATAGCTTATGGTA+TGG - Chr6:14974586-14974605 MsG0680031130.01.T01:intron 30.0%
AAGTGAAAAATCACCTTAAC+AGG - Chr6:14974853-14974872 MsG0680031130.01.T01:intron 30.0%
AATCAGAATAAAGGCAAACA+TGG + Chr6:14974687-14974706 None:intergenic 30.0%
ACTCATTGTACTCACAATAT+GGG - Chr6:14973423-14973442 MsG0680031130.01.T01:intron 30.0%
ATCCAGGTAATGTTACAAAA+TGG + Chr6:14975127-14975146 None:intergenic 30.0%
ATTACTGCATGAAAATGTGT+AGG + Chr6:14972923-14972942 None:intergenic 30.0%
ATTCTTCTCCAATTCATACT+AGG - Chr6:14975085-14975104 MsG0680031130.01.T01:intron 30.0%
CAAATGACCAACATAAGATA+GGG + Chr6:14973810-14973829 None:intergenic 30.0%
CAAGATTGCAAGAATATAGT+GGG + Chr6:14973688-14973707 None:intergenic 30.0%
CAATACTTCCTAGTATGAAT+TGG + Chr6:14975096-14975115 None:intergenic 30.0%
CTCTGTAACCAATTTGTATT+TGG + Chr6:14975540-14975559 None:intergenic 30.0%
GAAAGATGCTTAGGTATTAT+TGG + Chr6:14973352-14973371 None:intergenic 30.0%
GAAAGCTGGAAGAAATAAAA+TGG - Chr6:14975710-14975729 MsG0680031130.01.T01:CDS 30.0%
GACCATTTGGTATAAATCAA+TGG + Chr6:14973019-14973038 None:intergenic 30.0%
GAGAGATGGAAATTAGAATT+AGG - Chr6:14973187-14973206 MsG0680031130.01.T01:intron 30.0%
GATCAACTAATAGAACTTCT+GGG - Chr6:14972578-14972597 MsG0680031130.01.T01:three_prime_UTR 30.0%
GATGTGATGTAACAAATGTT+AGG + Chr6:14973632-14973651 None:intergenic 30.0%
TACTCATTGTACTCACAATA+TGG - Chr6:14973422-14973441 MsG0680031130.01.T01:intron 30.0%
TCAAATGACCAACATAAGAT+AGG + Chr6:14973811-14973830 None:intergenic 30.0%
TCAGTCAATAATTGCTTCAA+AGG - Chr6:14973584-14973603 MsG0680031130.01.T01:intron 30.0%
TCGAACCAAATAAAAACACT+TGG + Chr6:14974269-14974288 None:intergenic 30.0%
TCTAAAGAGCTTTACTCTTA+TGG - Chr6:14972852-14972871 MsG0680031130.01.T01:three_prime_UTR 30.0%
TGTAACCAATTTGTATTTGG+AGG + Chr6:14975537-14975556 None:intergenic 30.0%
TTGAAAGCTGATGTAAACAT+TGG + Chr6:14974752-14974771 None:intergenic 30.0%
! AATTCGTGACTTTTACATGA+AGG + Chr6:14974907-14974926 None:intergenic 30.0%
! ACGAGTCTTTTAGTAACTTA+TGG + Chr6:14974494-14974513 None:intergenic 30.0%
! AGAGAGTTGAAGTAGATTTT+GGG - Chr6:14975556-14975575 MsG0680031130.01.T01:intron 30.0%
! ATCCATTTTGTAACATTACC+TGG - Chr6:14975122-14975141 MsG0680031130.01.T01:intron 30.0%
! CTCGAGCATTAGTTTAAAAT+CGG - Chr6:14972947-14972966 MsG0680031130.01.T01:CDS 30.0%
! GATATCCAACGTAATAGTTT+TGG - Chr6:14973952-14973971 MsG0680031130.01.T01:intron 30.0%
! GCATGTGTTGTTCAAAAATA+AGG + Chr6:14974172-14974191 None:intergenic 30.0%
! GCTTATCGTCTTTCTTTTAT+GGG - Chr6:14973380-14973399 MsG0680031130.01.T01:intron 30.0%
! TGAGTAACTGCTCTAAATAA+TGG - Chr6:14973883-14973902 MsG0680031130.01.T01:intron 30.0%
! TTGGTTCGAGTAATGTTAAT+TGG - Chr6:14974280-14974299 MsG0680031130.01.T01:intron 30.0%
! TTTTGTTGAAGCCAAAATCA+TGG - Chr6:14974371-14974390 MsG0680031130.01.T01:intron 30.0%
!! ATCTTGCTTGTTTTTCATGA+AGG - Chr6:14973702-14973721 MsG0680031130.01.T01:intron 30.0%
!! ATGTGCCAAGTGTTTTTATT+TGG - Chr6:14974261-14974280 MsG0680031130.01.T01:intron 30.0%
!! GACCATTGATTTATACCAAA+TGG - Chr6:14973014-14973033 MsG0680031130.01.T01:CDS 30.0%
!! GTTTTGAATTTTGATCACTC+TGG - Chr6:14972762-14972781 MsG0680031130.01.T01:three_prime_UTR 30.0%
!! TATTTTTGAACAACACATGC+AGG - Chr6:14974172-14974191 MsG0680031130.01.T01:intron 30.0%
!! TCTTGCTTGTTTTTCATGAA+GGG - Chr6:14973703-14973722 MsG0680031130.01.T01:intron 30.0%
!!! CTCGTTTTTTAAAGAGTGTT+TGG - Chr6:14974509-14974528 MsG0680031130.01.T01:CDS 30.0%
AATTCACCTCCCAAGTAAAA+AGG - Chr6:14975047-14975066 MsG0680031130.01.T01:intron 35.0%
ACAACTTCAATAGAAAAGGG+AGG + Chr6:14974132-14974151 None:intergenic 35.0%
ACAGGTAAATACATGCCATT+GGG + Chr6:14975275-14975294 None:intergenic 35.0%
CATTGTTATGTTGTCTTGTG+CGG - Chr6:14973514-14973533 MsG0680031130.01.T01:intron 35.0%
CCAATGAATACTCACATTTG+AGG + Chr6:14973659-14973678 None:intergenic 35.0%
CCTATTCTCTGTTAATGCTT+GGG - Chr6:14972660-14972679 MsG0680031130.01.T01:three_prime_UTR 35.0%
CCTCAAATGTGAGTATTCAT+TGG - Chr6:14973656-14973675 MsG0680031130.01.T01:intron 35.0%
CGGTGAGATTAAAAGAATCA+CGG + Chr6:14974404-14974423 None:intergenic 35.0%
CTCATTGTACTCACAATATG+GGG - Chr6:14973424-14973443 MsG0680031130.01.T01:intron 35.0%
CTTTGATCCCTATCTTATGT+TGG - Chr6:14973800-14973819 MsG0680031130.01.T01:intron 35.0%
GAACACATTAACTGCATGTT+TGG + Chr6:14974432-14974451 None:intergenic 35.0%
GCAAGATTGCAAGAATATAG+TGG + Chr6:14973689-14973708 None:intergenic 35.0%
GCAGGATTAAAAGATAACAC+AGG + Chr6:14975293-14975312 None:intergenic 35.0%
GCGAAAGATGAAAACAACTA+CGG + Chr6:14974612-14974631 None:intergenic 35.0%
GGATCAACTAATAGAACTTC+TGG - Chr6:14972577-14972596 MsG0680031130.01.T01:three_prime_UTR 35.0%
GGATTGTACATGTCAGTTAT+AGG - Chr6:14972873-14972892 MsG0680031130.01.T01:three_prime_UTR 35.0%
GGTTACATATCTTGACCATT+TGG + Chr6:14973032-14973051 None:intergenic 35.0%
TCCTATTCTCTGTTAATGCT+TGG - Chr6:14972659-14972678 MsG0680031130.01.T01:three_prime_UTR 35.0%
TGACTGAAAGTAAACTTGCA+CGG + Chr6:14973571-14973590 None:intergenic 35.0%
TTTCGCCATAAAACTCTGTT+AGG - Chr6:14974626-14974645 MsG0680031130.01.T01:intron 35.0%
! ACATGTTATAGAAGGCATGA+TGG + Chr6:14973761-14973780 None:intergenic 35.0%
! AGAGTGTTTGGGCTAAAATT+GGG - Chr6:14975361-14975380 MsG0680031130.01.T01:intron 35.0%
! AGCTACCTAACAGAGTTTTA+TGG + Chr6:14974634-14974653 None:intergenic 35.0%
! AGCTGATGTAAACATTGGTT+TGG + Chr6:14974747-14974766 None:intergenic 35.0%
! ATGTTATAGAAGGCATGATG+GGG + Chr6:14973759-14973778 None:intergenic 35.0%
! CAGAGAGTTGAAGTAGATTT+TGG - Chr6:14975555-14975574 MsG0680031130.01.T01:intron 35.0%
! CATGTTATAGAAGGCATGAT+GGG + Chr6:14973760-14973779 None:intergenic 35.0%
! GGCTTATCGTCTTTCTTTTA+TGG - Chr6:14973379-14973398 MsG0680031130.01.T01:intron 35.0%
! TGCATATCATCAGAGTGTTT+GGG - Chr6:14975350-14975369 MsG0680031130.01.T01:intron 35.0%
! TTCAATCCTTTTTACTTGGG+AGG + Chr6:14975056-14975075 None:intergenic 35.0%
! TTCATGTTGAGCACTTGTTT+TGG - Chr6:14973157-14973176 MsG0680031130.01.T01:intron 35.0%
! TTTACATGAAGGTATAGCTG+TGG + Chr6:14974896-14974915 None:intergenic 35.0%
!! GCTGATGTAAACATTGGTTT+GGG + Chr6:14974746-14974765 None:intergenic 35.0%
!! TCATGTTGAGCACTTGTTTT+GGG - Chr6:14973158-14973177 MsG0680031130.01.T01:intron 35.0%
!! TTGCTTCTATAGGAAGTACT+TGG - Chr6:14973979-14973998 MsG0680031130.01.T01:intron 35.0%
!!! TATTAGGGGACACTGTTTTT+TGG - Chr6:14973921-14973940 MsG0680031130.01.T01:intron 35.0%
ACCTAAGCATCTTTCTTCAC+AGG - Chr6:14973357-14973376 MsG0680031130.01.T01:intron 40.0%
ACTTTAACAGCAGGGAATTC+GGG + Chr6:14972900-14972919 None:intergenic 40.0%
ATGTGTAGGACTTTAACAGC+AGG + Chr6:14972909-14972928 None:intergenic 40.0%
CACAGGTAAATACATGCCAT+TGG + Chr6:14975276-14975295 None:intergenic 40.0%
CATCTTTGAACTGCAGATAG+AGG + Chr6:14975435-14975454 None:intergenic 40.0%
CCCAAGCATTAACAGAGAAT+AGG + Chr6:14972663-14972682 None:intergenic 40.0%
CCTAAGCATCTTTCTTCACA+GGG - Chr6:14973358-14973377 MsG0680031130.01.T01:intron 40.0%
CGGCTAACAGAAATAGCTTA+TGG - Chr6:14974581-14974600 MsG0680031130.01.T01:intron 40.0%
CGGTGAGTTTGACAAAATCA+CGG - Chr6:14974337-14974356 MsG0680031130.01.T01:intron 40.0%
CTCTATCTGCAGTTCAAAGA+TGG - Chr6:14975433-14975452 MsG0680031130.01.T01:intron 40.0%
CTGTAGTTGCATACTAGCAT+AGG + Chr6:14973109-14973128 None:intergenic 40.0%
GAAGTTACGTCTAAGGAACT+TGG + Chr6:14973842-14973861 None:intergenic 40.0%
GACTTTAACAGCAGGGAATT+CGG + Chr6:14972901-14972920 None:intergenic 40.0%
GTATTATTGGAACAGCTGCA+AGG + Chr6:14973339-14973358 None:intergenic 40.0%
GTTGTACAAGATCTGAATCC+AGG + Chr6:14975143-14975162 None:intergenic 40.0%
TAACTGCATGTTTGGATTCG+CGG + Chr6:14974424-14974443 None:intergenic 40.0%
TATCTGCAGTTCAAAGATGG+TGG - Chr6:14975436-14975455 MsG0680031130.01.T01:intron 40.0%
TCATGCAGTTACATACGACA+TGG + Chr6:14973053-14973072 None:intergenic 40.0%
TCTCTGTTAATGCTTGGGTA+AGG - Chr6:14972665-14972684 MsG0680031130.01.T01:three_prime_UTR 40.0%
TGAGTTTGACAAAATCACGG+TGG - Chr6:14974340-14974359 MsG0680031130.01.T01:intron 40.0%
TGCATGACACAGTTACAACA+GGG - Chr6:14973066-14973085 MsG0680031130.01.T01:intron 40.0%
TGGTGGTTAAGGTAGAAGTT+TGG - Chr6:14975453-14975472 MsG0680031130.01.T01:intron 40.0%
TGTGTAGGACTTTAACAGCA+GGG + Chr6:14972908-14972927 None:intergenic 40.0%
TGTTGAAGCCAAAATCATGG+TGG - Chr6:14974374-14974393 MsG0680031130.01.T01:intron 40.0%
TTTGACTCTACCCAAACACA+GGG + Chr6:14974010-14974029 None:intergenic 40.0%
! ACAAACATTCATGTACTGGC+AGG - Chr6:14974212-14974231 MsG0680031130.01.T01:intron 40.0%
! CAGAGTGTTTGGGCTAAAAT+TGG - Chr6:14975360-14975379 MsG0680031130.01.T01:intron 40.0%
! CAGTTCAAAGATGGTGGTTA+AGG - Chr6:14975442-14975461 MsG0680031130.01.T01:intron 40.0%
! CTGCATATCATCAGAGTGTT+TGG - Chr6:14975349-14975368 MsG0680031130.01.T01:intron 40.0%
! GGTTTGGGATGAATTGAAGT+TGG + Chr6:14974731-14974750 None:intergenic 40.0%
! TTTTGAACAACACATGCAGG+TGG - Chr6:14974175-14974194 MsG0680031130.01.T01:intron 40.0%
! TTTTGATCACTCTGGTTGAC+TGG - Chr6:14972770-14972789 MsG0680031130.01.T01:three_prime_UTR 40.0%
!! AGCTATTTCTGTTAGCCGTA+CGG + Chr6:14974579-14974598 None:intergenic 40.0%
!! GATAGAGGTGTCTTCAAGAA+CGG + Chr6:14975420-14975439 None:intergenic 40.0%
!! TTGGTGCTGTTCCAATGAAA+TGG + Chr6:14975492-14975511 None:intergenic 40.0%
AAACTAACGAGAACAGCGAG+AGG + Chr6:14974093-14974112 None:intergenic 45.0%
ACATGAGCTTCAAAAGCTGC+AGG + Chr6:14975311-14975330 None:intergenic 45.0%
AGCGACTGAAGTTACGTCTA+AGG + Chr6:14973849-14973868 None:intergenic 45.0%
CCCTGTGAAGAAAGATGCTT+AGG + Chr6:14973361-14973380 None:intergenic 45.0%
CTGACATCACATGCTGAGAT+TGG - Chr6:14974049-14974068 MsG0680031130.01.T01:intron 45.0%
CTGCATGACACAGTTACAAC+AGG - Chr6:14973065-14973084 MsG0680031130.01.T01:intron 45.0%
GTGTTTGGGCTAAAATTGGG+AGG - Chr6:14975364-14975383 MsG0680031130.01.T01:intron 45.0%
GTTTGACTCTACCCAAACAC+AGG + Chr6:14974011-14974030 None:intergenic 45.0%
TCACATGCTGAGATTGGACT+TGG - Chr6:14974055-14974074 MsG0680031130.01.T01:intron 45.0%
TGATGATATGCAGCAGTGAC+AGG + Chr6:14975342-14975361 None:intergenic 45.0%
TTGGGCTAAAATTGGGAGGT+CGG - Chr6:14975368-14975387 MsG0680031130.01.T01:intron 45.0%
!! TTTTCTGCAGGTGCTTGTTG+TGG - Chr6:14973309-14973328 MsG0680031130.01.T01:intron 45.0%
!!! GTTTTGGGAGGAAAGAGAGA+TGG - Chr6:14973173-14973192 MsG0680031130.01.T01:intron 45.0%
!!! TGTTGAGCACTTGTTTTGGG+AGG - Chr6:14973161-14973180 MsG0680031130.01.T01:intron 45.0%
ACAACTCGTTGCACGTGCAT+CGG + Chr6:14975165-14975184 None:intergenic 50.0%
ACTTGGAAGAGCCCTGTGTT+TGG - Chr6:14973996-14974015 MsG0680031130.01.T01:intron 50.0%
CTTGGAAGAGCCCTGTGTTT+GGG - Chr6:14973997-14974016 MsG0680031130.01.T01:intron 50.0%
GTGTCTTCAAGAACGGTGCA+TGG + Chr6:14975413-14975432 None:intergenic 50.0%
TAATCCAGCTCCTCTGCGTT+GGG - Chr6:14972624-14972643 MsG0680031130.01.T01:three_prime_UTR 50.0%
TCAGTCGCTCTACTCTGTAC+AGG - Chr6:14973860-14973879 MsG0680031130.01.T01:intron 50.0%
TCTTCAAGAACGGTGCATGG+CGG + Chr6:14975410-14975429 None:intergenic 50.0%
! ACCAAGAGCGTGGAATATGC+AGG - Chr6:14973545-14973564 MsG0680031130.01.T01:intron 50.0%
! ACGGTGAGCCACCATGATTT+TGG + Chr6:14974385-14974404 None:intergenic 50.0%
!! TTCTGGGACATCTGCAACTG+CGG - Chr6:14972594-14972613 MsG0680031130.01.T01:three_prime_UTR 50.0%
CAACGCAGAGGAGCTGGATT+AGG + Chr6:14972625-14972644 None:intergenic 55.0%
CTAATCCAGCTCCTCTGCGT+TGG - Chr6:14972623-14972642 MsG0680031130.01.T01:three_prime_UTR 55.0%
GCCTGCATATTCCACGCTCT+TGG + Chr6:14973549-14973568 None:intergenic 55.0%
GGTTGCAGAAACCAAGAGCG+TGG - Chr6:14973535-14973554 MsG0680031130.01.T01:intron 55.0%
GTCTGTCTATCCCAACGCAG+AGG + Chr6:14972637-14972656 None:intergenic 55.0%
CTATCCCAACGCAGAGGAGC+TGG + Chr6:14972631-14972650 None:intergenic 60.0%
GGTGCATGGCGGTGGATAAG+CGG + Chr6:14975399-14975418 None:intergenic 60.0%
TCAAGAACGGTGCATGGCGG+TGG + Chr6:14975407-14975426 None:intergenic 60.0%
TGGGACATCTGCAACTGCGG+CGG - Chr6:14972597-14972616 MsG0680031130.01.T01:three_prime_UTR 60.0%
GGGACATCTGCAACTGCGGC+GGG - Chr6:14972598-14972617 MsG0680031130.01.T01:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 14972562 14975804 14972562 ID=MsG0680031130.01;Name=MsG0680031130.01
Chr6 mRNA 14972562 14975804 14972562 ID=MsG0680031130.01.T01;Parent=MsG0680031130.01;Name=MsG0680031130.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0.5|0.8|1|0.5|0.8|5|337|174
Chr6 exon 14972562 14973051 14972562 ID=MsG0680031130.01.T01:exon:10157;Parent=MsG0680031130.01.T01
Chr6 exon 14974133 14974172 14974133 ID=MsG0680031130.01.T01:exon:10156;Parent=MsG0680031130.01.T01
Chr6 exon 14974485 14974569 14974485 ID=MsG0680031130.01.T01:exon:10155;Parent=MsG0680031130.01.T01
Chr6 exon 14974921 14975047 14974921 ID=MsG0680031130.01.T01:exon:10154;Parent=MsG0680031130.01.T01
Chr6 exon 14975685 14975804 14975685 ID=MsG0680031130.01.T01:exon:10153;Parent=MsG0680031130.01.T01
Chr6 CDS 14975685 14975804 14975685 ID=MsG0680031130.01.T01:cds;Parent=MsG0680031130.01.T01
Chr6 CDS 14974921 14975047 14974921 ID=MsG0680031130.01.T01:cds;Parent=MsG0680031130.01.T01
Chr6 CDS 14974485 14974569 14974485 ID=MsG0680031130.01.T01:cds;Parent=MsG0680031130.01.T01
Chr6 CDS 14974133 14974172 14974133 ID=MsG0680031130.01.T01:cds;Parent=MsG0680031130.01.T01
Chr6 CDS 14972899 14973051 14972899 ID=MsG0680031130.01.T01:cds;Parent=MsG0680031130.01.T01
Chr6 three_prime_UTR 14972562 14972898 14972562 ID=MsG0680031130.01.T01:three_prime_utr;Parent=MsG0680031130.01.T01
Gene Sequence

>MsG0680031130.01.T01

TTGGATTTTTCTGCAGGATCAACTAATAGAACTTCTGGGACATCTGCAACTGCGGCGGGTCCTAATCCAGCTCCTCTGCGTTGGGATAGACAGACAATCCTATTCTCTGTTAATGCTTGGGTGCTTGTTGTGGCATTCCTTGCAGCTGTTCCAATAATACCTAAGCATCTTTCTTCACAGGGCTTATCGTCTTTCTTTTATGGGTACTTTATGTTCTTCACTGTACTCATTGTACTCACAATATGGGTTGCTTTGATCCCTATCTTATGTTGGTCATTTGAACATGTTGCCAAGTTCCTTAGACGTAACTTCAGTCGCTCTACTCTGTACAGGTGGCAACGCAACATAATACAAACATTCATGTACTGGCAGCTTTTGAAGCTCATGTATCATGTTCCTGTCACTGCTGCATATCATCAGAGTGTTTGGGCTAAAATTGGGAGGTCGGTCAATCCGCTTATCCACCGCCATGCACCGTTCTTGAAGACACCTCTATCTGCAGTTCAAAGATGGTGGTTAAGGTAG
Protein sequence

>MsG0680031130.01.T01

LDFSAGSTNRTSGTSATAAGPNPAPLRWDRQTILFSVNAWVLVVAFLAAVPIIPKHLSSQGLSSFFYGYFMFFTVLIVLTIWVALIPILCWSFEHVAKFLRRNFSRSTLYRWQRNIIQTFMYWQLLKLMYHVPVTAAYHQSVWAKIGRSVNPLIHRHAPFLKTPLSAVQRWWLR*