Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036575.01.T01 | XP_003621484.1 | 75.232 | 323 | 18 | 3 | 1 | 261 | 24 | 346 | 1.52E-164 | 470 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036575.01.T01 | O22309 | 63.777 | 323 | 50 | 4 | 1 | 261 | 24 | 341 | 3.15E-142 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036575.01.T01 | Q06YR3 | 75.232 | 323 | 18 | 3 | 1 | 261 | 24 | 346 | 7.28e-165 | 470 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0480022507.01 | MsG0780036575.01 | 0.810851 | 9.383306e-51 | 5.719197e-48 |
| MsG0280006581.01 | MsG0780036575.01 | 0.815877 | 7.381167e-52 | 5.150309e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036575.01.T01 | MTR_7g014510 | 75.232 | 323 | 18 | 3 | 1 | 261 | 24 | 346 | 1.85e-168 | 470 |
| MsG0780036575.01.T01 | MTR_7g014570 | 65.015 | 323 | 46 | 4 | 1 | 261 | 24 | 341 | 5.96e-147 | 415 |
| MsG0780036575.01.T01 | MTR_1g076940 | 48.476 | 328 | 103 | 5 | 1 | 262 | 24 | 351 | 1.39e-100 | 298 |
| MsG0780036575.01.T01 | MTR_4g088345 | 44.410 | 322 | 112 | 6 | 1 | 258 | 24 | 342 | 1.47e-87 | 265 |
| MsG0780036575.01.T01 | MTR_4g088340 | 43.168 | 322 | 116 | 5 | 1 | 258 | 1 | 319 | 5.29e-87 | 262 |
| MsG0780036575.01.T01 | MTR_7g024520 | 42.271 | 317 | 121 | 5 | 1 | 258 | 23 | 336 | 3.33e-85 | 258 |
| MsG0780036575.01.T01 | MTR_7g024500 | 42.902 | 317 | 119 | 5 | 1 | 258 | 23 | 336 | 1.01e-84 | 257 |
| MsG0780036575.01.T01 | MTR_4g079160 | 40.061 | 327 | 127 | 7 | 1 | 262 | 23 | 345 | 1.82e-74 | 231 |
| MsG0780036575.01.T01 | MTR_4g088200 | 39.450 | 327 | 132 | 5 | 1 | 261 | 24 | 350 | 7.77e-73 | 227 |
| MsG0780036575.01.T01 | MTR_4g033015 | 40.122 | 329 | 129 | 6 | 1 | 261 | 24 | 352 | 3.04e-70 | 220 |
| MsG0780036575.01.T01 | MTR_4g033200 | 40.122 | 329 | 129 | 6 | 1 | 261 | 24 | 352 | 4.20e-70 | 220 |
| MsG0780036575.01.T01 | MTR_5g074600 | 37.994 | 329 | 134 | 8 | 1 | 262 | 24 | 349 | 6.44e-69 | 217 |
| MsG0780036575.01.T01 | MTR_5g074580 | 38.602 | 329 | 132 | 8 | 1 | 262 | 25 | 350 | 4.93e-68 | 214 |
| MsG0780036575.01.T01 | MTR_4g033150 | 39.394 | 330 | 130 | 7 | 1 | 261 | 24 | 352 | 1.47e-66 | 211 |
| MsG0780036575.01.T01 | MTR_5g074680 | 36.391 | 327 | 142 | 7 | 1 | 262 | 25 | 350 | 3.99e-65 | 207 |
| MsG0780036575.01.T01 | MTR_4g088190 | 39.394 | 330 | 131 | 6 | 1 | 261 | 24 | 353 | 1.78e-63 | 203 |
| MsG0780036575.01.T01 | MTR_1g076930 | 50.000 | 208 | 70 | 3 | 1 | 175 | 1 | 207 | 9.91e-62 | 195 |
| MsG0780036575.01.T01 | MTR_4g033170 | 39.144 | 327 | 129 | 6 | 1 | 261 | 24 | 346 | 4.82e-60 | 194 |
| MsG0780036575.01.T01 | MTR_5g074540 | 33.758 | 314 | 150 | 6 | 1 | 262 | 24 | 331 | 9.74e-58 | 187 |
| MsG0780036575.01.T01 | MTR_5g074610 | 37.919 | 298 | 142 | 7 | 4 | 262 | 23 | 316 | 1.19e-57 | 187 |
| MsG0780036575.01.T01 | MTR_4g033085 | 39.450 | 327 | 128 | 6 | 1 | 261 | 24 | 346 | 5.70e-55 | 181 |
| MsG0780036575.01.T01 | MTR_0794s0020 | 42.925 | 212 | 83 | 5 | 1 | 175 | 24 | 234 | 1.24e-49 | 164 |
| MsG0780036575.01.T01 | MTR_3g083620 | 29.969 | 327 | 156 | 10 | 1 | 261 | 31 | 350 | 3.55e-41 | 145 |
| MsG0780036575.01.T01 | MTR_0079s0070 | 30.183 | 328 | 151 | 8 | 1 | 258 | 1 | 320 | 1.98e-36 | 132 |
| MsG0780036575.01.T01 | MTR_4g038440 | 30.183 | 328 | 151 | 8 | 1 | 258 | 35 | 354 | 4.53e-36 | 132 |
| MsG0780036575.01.T01 | MTR_0017s0100 | 29.464 | 336 | 154 | 10 | 1 | 262 | 35 | 361 | 2.17e-35 | 130 |
| MsG0780036575.01.T01 | MTR_7g011900 | 26.332 | 319 | 163 | 10 | 10 | 259 | 41 | 356 | 1.96e-24 | 100 |
| MsG0780036575.01.T01 | MTR_5g098170 | 26.852 | 324 | 159 | 9 | 8 | 259 | 33 | 350 | 2.29e-23 | 97.8 |
| MsG0780036575.01.T01 | MTR_3g092900 | 24.691 | 324 | 173 | 8 | 3 | 258 | 29 | 349 | 9.93e-23 | 95.9 |
| MsG0780036575.01.T01 | MTR_1g036490 | 29.843 | 191 | 99 | 3 | 101 | 259 | 168 | 355 | 1.42e-21 | 92.8 |
| MsG0780036575.01.T01 | MTR_7g011990 | 26.984 | 189 | 103 | 3 | 102 | 258 | 167 | 352 | 2.65e-20 | 89.4 |
| MsG0780036575.01.T01 | MTR_1g036460 | 29.843 | 191 | 99 | 3 | 101 | 259 | 168 | 355 | 2.77e-20 | 89.4 |
| MsG0780036575.01.T01 | MTR_8g024160 | 29.949 | 197 | 96 | 5 | 102 | 262 | 128 | 318 | 5.37e-20 | 87.8 |
| MsG0780036575.01.T01 | MTR_7g012070 | 27.895 | 190 | 102 | 3 | 101 | 258 | 174 | 360 | 1.23e-19 | 87.4 |
| MsG0780036575.01.T01 | MTR_1g036510 | 29.534 | 193 | 95 | 5 | 102 | 259 | 183 | 369 | 1.65e-19 | 87.4 |
| MsG0780036575.01.T01 | MTR_7g012040 | 22.713 | 317 | 174 | 8 | 10 | 258 | 40 | 353 | 1.76e-19 | 87.0 |
| MsG0780036575.01.T01 | MTR_3g021440 | 25.610 | 328 | 156 | 11 | 10 | 261 | 43 | 358 | 1.20e-18 | 84.7 |
| MsG0780036575.01.T01 | MTR_3g096050 | 25.312 | 320 | 161 | 13 | 9 | 257 | 31 | 343 | 8.28e-16 | 76.6 |
| MsG0780036575.01.T01 | MTR_3g096070 | 26.846 | 298 | 161 | 11 | 9 | 257 | 31 | 320 | 9.75e-16 | 76.3 |
| MsG0780036575.01.T01 | MTR_1g050220 | 29.286 | 140 | 74 | 3 | 139 | 256 | 151 | 287 | 2.86e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036575.01.T01 | AT4G35150 | 31.922 | 307 | 151 | 10 | 1 | 263 | 23 | 315 | 1.65e-40 | 142 |
| MsG0780036575.01.T01 | AT4G35160 | 29.619 | 341 | 157 | 10 | 1 | 263 | 37 | 372 | 6.25e-33 | 124 |
| MsG0780036575.01.T01 | AT5G54160 | 25.152 | 330 | 162 | 12 | 3 | 258 | 29 | 347 | 4.93e-24 | 99.8 |
| MsG0780036575.01.T01 | AT1G77520 | 30.688 | 189 | 90 | 5 | 101 | 253 | 179 | 362 | 1.35e-20 | 90.5 |
| MsG0780036575.01.T01 | AT1G51990 | 28.646 | 192 | 100 | 4 | 101 | 258 | 160 | 348 | 1.29e-18 | 84.7 |
| MsG0780036575.01.T01 | AT1G51990 | 28.646 | 192 | 100 | 4 | 101 | 258 | 160 | 348 | 1.37e-18 | 84.3 |
| MsG0780036575.01.T01 | AT1G77530 | 28.877 | 187 | 96 | 4 | 101 | 253 | 179 | 362 | 2.56e-13 | 69.3 |
Find 41 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATTTAGGTTATGATTTA+TGG | 0.080249 | 7:+9975833 | MsG0780036575.01.T01:intron |
| TCACCTGTCTTGTGATAATT+TGG | 0.130821 | 7:+9977129 | MsG0780036575.01.T01:three_prime_UTR |
| CCATTATTGTGGATAATATT+TGG | 0.147159 | 7:-9975514 | None:intergenic |
| CAATGCCAAATTAATCATTT+TGG | 0.154805 | 7:-9975917 | None:intergenic |
| GCTTCAGAGCTTCTTGTTAA+AGG | 0.174797 | 7:+9975700 | MsG0780036575.01.T01:CDS |
| TGAATCCAAAATGATTAATT+TGG | 0.178795 | 7:+9975912 | MsG0780036575.01.T01:CDS |
| ACTAAGTTTGAAAGAGTAAT+TGG | 0.200330 | 7:-9975541 | None:intergenic |
| GTTAGAATTTCATGTGTTAA+TGG | 0.205151 | 7:+9976901 | MsG0780036575.01.T01:CDS |
| CTACAAAATATCTTCTTTAC+TGG | 0.240034 | 7:+9976981 | MsG0780036575.01.T01:CDS |
| AAAGCATGTAAACTACTAAA+TGG | 0.295758 | 7:-9977052 | None:intergenic |
| TTGAACAATCTATTATATTC+AGG | 0.315369 | 7:-9975874 | None:intergenic |
| TCATTTAGGTTATGATTTAT+GGG | 0.338649 | 7:+9975834 | MsG0780036575.01.T01:intron |
| CCAAATATTATCCACAATAA+TGG | 0.343354 | 7:+9975514 | MsG0780036575.01.T01:CDS |
| TTTACATGATTGGACTGATA+AGG | 0.394656 | 7:+9976741 | MsG0780036575.01.T01:CDS |
| ATCTATCCTTGAAATACTAA+TGG | 0.401280 | 7:+9977023 | MsG0780036575.01.T01:three_prime_UTR |
| CTGAAATTTGTTTAGCTCCA+TGG | 0.415957 | 7:+9975725 | MsG0780036575.01.T01:CDS |
| GTTGATGTTGGCGGTGGAAA+TGG | 0.418984 | 7:+9975979 | MsG0780036575.01.T01:CDS |
| ACGTTATCGACTTTGGTTGA+TGG | 0.424903 | 7:-9975580 | None:intergenic |
| AAAACAACACATTTCAACTT+AGG | 0.426677 | 7:-9976033 | None:intergenic |
| AAGAGAGAAATGAGGAAGAA+TGG | 0.436880 | 7:+9976926 | MsG0780036575.01.T01:CDS |
| TAGATTCTATGTCTCTGAAA+TGG | 0.439367 | 7:+9975473 | MsG0780036575.01.T01:CDS |
| ATTAAACCATTAGTATTTCA+AGG | 0.439979 | 7:-9977029 | None:intergenic |
| AAAAGTGATTGTGATAGATA+TGG | 0.441921 | 7:+9976822 | MsG0780036575.01.T01:CDS |
| TTGGAATCAATTGTTGATGT+TGG | 0.447276 | 7:+9975967 | MsG0780036575.01.T01:CDS |
| GTAGCTTTATTTGAGTAAGT+TGG | 0.477459 | 7:-9976870 | None:intergenic |
| AAAGAAGCTGTTACAAGTGG+TGG | 0.494645 | 7:+9976790 | MsG0780036575.01.T01:CDS |
| ACGCTGCACGTTATCGACTT+TGG | 0.496595 | 7:-9975587 | None:intergenic |
| CAAAGAATCCATTGTGTGCA+AGG | 0.499117 | 7:-9975621 | None:intergenic |
| GGCGGTGGAAATGGAACAAC+TGG | 0.511740 | 7:+9975988 | MsG0780036575.01.T01:CDS |
| TCCCCAAATTATCACAAGAC+AGG | 0.520726 | 7:-9977132 | None:intergenic |
| TAATTGGTTTGCCATTATTG+TGG | 0.529109 | 7:-9975525 | None:intergenic |
| GAATCAATTGTTGATGTTGG+CGG | 0.538331 | 7:+9975970 | MsG0780036575.01.T01:CDS |
| GTTACAAGTGGTGGGAAAAG+AGG | 0.540136 | 7:+9976799 | MsG0780036575.01.T01:CDS |
| CAGAGACATAGAATCTATGA+AGG | 0.547617 | 7:-9975467 | None:intergenic |
| TCAATTGTTGATGTTGGCGG+TGG | 0.549085 | 7:+9975973 | MsG0780036575.01.T01:CDS |
| TAGATTGTTCAATGATGCAA+TGG | 0.569948 | 7:+9975885 | MsG0780036575.01.T01:CDS |
| AAGAAGCTGTTACAAGTGGT+GGG | 0.588461 | 7:+9976791 | MsG0780036575.01.T01:CDS |
| ATGCGTTACCTTGCACACAA+TGG | 0.609100 | 7:+9975613 | MsG0780036575.01.T01:CDS |
| TAATGGAAAAGAGAGAAATG+AGG | 0.609693 | 7:+9976918 | MsG0780036575.01.T01:CDS |
| TGTAAAGAAGCTGTTACAAG+TGG | 0.628241 | 7:+9976787 | MsG0780036575.01.T01:CDS |
| ATCAAGAACACACTCAACCA+TGG | 0.636973 | 7:-9975742 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTAAAATTATGCTTT+TGG | - | Chr7:9976333-9976352 | None:intergenic | 10.0% |
| !!! | GAAATTTTTAAATGATAAAT+GGG | + | Chr7:9976353-9976372 | MsG0780036575.01.T01:intron | 10.0% |
| !!! | TGAAATTTTTAAATGATAAA+TGG | + | Chr7:9976352-9976371 | MsG0780036575.01.T01:intron | 10.0% |
| !!! | TGTTTTAAAATTCTATTTTT+GGG | + | Chr7:9976201-9976220 | MsG0780036575.01.T01:intron | 10.0% |
| !!! | TTGTTTTAAAATTCTATTTT+TGG | + | Chr7:9976200-9976219 | MsG0780036575.01.T01:intron | 10.0% |
| !! | TATAAATTTCCTTAATAACT+TGG | - | Chr7:9976683-9976702 | None:intergenic | 15.0% |
| !! | ATTAAACCATTAGTATTTCA+AGG | - | Chr7:9977032-9977051 | None:intergenic | 20.0% |
| !! | CATTTCATAAGTAAAGAAAT+GGG | + | Chr7:9975781-9975800 | MsG0780036575.01.T01:intron | 20.0% |
| !! | TCATTTCATAAGTAAAGAAA+TGG | + | Chr7:9975780-9975799 | MsG0780036575.01.T01:intron | 20.0% |
| !! | TGAATCCAAAATGATTAATT+TGG | + | Chr7:9975912-9975931 | MsG0780036575.01.T01:CDS | 20.0% |
| !! | TTAGGATTGAAAATTCTAAA+GGG | - | Chr7:9976227-9976246 | None:intergenic | 20.0% |
| !! | TTGAACAATCTATTATATTC+AGG | - | Chr7:9975877-9975896 | None:intergenic | 20.0% |
| !!! | TCATTTAGGTTATGATTTAT+GGG | + | Chr7:9975834-9975853 | MsG0780036575.01.T01:intron | 20.0% |
| !!! | TTTAGGATTGAAAATTCTAA+AGG | - | Chr7:9976228-9976247 | None:intergenic | 20.0% |
| !!! | TTTTGCTATACAACAATTTT+AGG | - | Chr7:9976245-9976264 | None:intergenic | 20.0% |
| ! | AAAACAACACATTTCAACTT+AGG | - | Chr7:9976036-9976055 | None:intergenic | 25.0% |
| ! | AAAAGTGATTGTGATAGATA+TGG | + | Chr7:9976822-9976841 | MsG0780036575.01.T01:CDS | 25.0% |
| ! | AAAGCATGTAAACTACTAAA+TGG | - | Chr7:9977055-9977074 | None:intergenic | 25.0% |
| ! | AAAGGAAAAAAAAGCAATAG+AGG | - | Chr7:9976712-9976731 | None:intergenic | 25.0% |
| ! | ACTAAGTTTGAAAGAGTAAT+TGG | - | Chr7:9975544-9975563 | None:intergenic | 25.0% |
| ! | ATCTATCCTTGAAATACTAA+TGG | + | Chr7:9977023-9977042 | MsG0780036575.01.T01:three_prime_UTR | 25.0% |
| ! | CATTTCATACCAAGTTATTA+AGG | + | Chr7:9976671-9976690 | MsG0780036575.01.T01:intron | 25.0% |
| ! | CCAAATATTATCCACAATAA+TGG | + | Chr7:9975514-9975533 | MsG0780036575.01.T01:CDS | 25.0% |
| ! | CCATTATTGTGGATAATATT+TGG | - | Chr7:9975517-9975536 | None:intergenic | 25.0% |
| ! | CTACAAAATATCTTCTTTAC+TGG | + | Chr7:9976981-9977000 | MsG0780036575.01.T01:CDS | 25.0% |
| ! | GTTAGAATTTCATGTGTTAA+TGG | + | Chr7:9976901-9976920 | MsG0780036575.01.T01:CDS | 25.0% |
| !! | AAGAAGATATTTTGTAGTCT+TGG | - | Chr7:9976978-9976997 | None:intergenic | 25.0% |
| !! | AGATGTAACAATATTTTCTC+AGG | - | Chr7:9976511-9976530 | None:intergenic | 25.0% |
| !! | CAATGCCAAATTAATCATTT+TGG | - | Chr7:9975920-9975939 | None:intergenic | 25.0% |
| !! | GTCATTTAGGTTATGATTTA+TGG | + | Chr7:9975833-9975852 | MsG0780036575.01.T01:intron | 25.0% |
| !!! | AGATTGCAATTTTGTTTTTG+AGG | + | Chr7:9975942-9975961 | MsG0780036575.01.T01:CDS | 25.0% |
| !!! | ATTGCAATTTTGTTTTTGAG+GGG | + | Chr7:9975944-9975963 | MsG0780036575.01.T01:CDS | 25.0% |
| !!! | GATTGCAATTTTGTTTTTGA+GGG | + | Chr7:9975943-9975962 | MsG0780036575.01.T01:CDS | 25.0% |
| !!! | TTTATTTTGTGTTAATCCTG+CGG | + | Chr7:9976431-9976450 | MsG0780036575.01.T01:intron | 25.0% |
| AAAAAGCTCTTTATAGAAGC+AGG | + | Chr7:9976949-9976968 | MsG0780036575.01.T01:CDS | 30.0% | |
| AAGGTTGTAGAGAATTTATG+TGG | + | Chr7:9976066-9976085 | MsG0780036575.01.T01:intron | 30.0% | |
| CATAAATTCTCTACAACCTT+TGG | - | Chr7:9976066-9976085 | None:intergenic | 30.0% | |
| TAATGGAAAAGAGAGAAATG+AGG | + | Chr7:9976918-9976937 | MsG0780036575.01.T01:CDS | 30.0% | |
| TACATCTAAGAATTAAACGC+AGG | + | Chr7:9976524-9976543 | MsG0780036575.01.T01:intron | 30.0% | |
| TAGATTGTTCAATGATGCAA+TGG | + | Chr7:9975885-9975904 | MsG0780036575.01.T01:CDS | 30.0% | |
| TAGTAACTAAGCAATTGTTC+AGG | - | Chr7:9976554-9976573 | None:intergenic | 30.0% | |
| TGTATAGCAAAATCATCATC+AGG | + | Chr7:9976253-9976272 | MsG0780036575.01.T01:intron | 30.0% | |
| TTGGAATCAATTGTTGATGT+TGG | + | Chr7:9975967-9975986 | MsG0780036575.01.T01:CDS | 30.0% | |
| TTTACATGATTGGACTGATA+AGG | + | Chr7:9976741-9976760 | MsG0780036575.01.T01:CDS | 30.0% | |
| ! | AGTAAAGAAATGGGTTTATG+AGG | + | Chr7:9975790-9975809 | MsG0780036575.01.T01:intron | 30.0% |
| ! | AGTAACCATTTGACTTATGT+TGG | + | Chr7:9976090-9976109 | MsG0780036575.01.T01:intron | 30.0% |
| ! | TAGATTCTATGTCTCTGAAA+TGG | + | Chr7:9975473-9975492 | MsG0780036575.01.T01:CDS | 30.0% |
| ! | TGAAATGAAGCTAAAAGTGT+TGG | - | Chr7:9975768-9975787 | None:intergenic | 30.0% |
| !! | GTAGCTTTATTTGAGTAAGT+TGG | - | Chr7:9976873-9976892 | None:intergenic | 30.0% |
| !! | TAATTGGTTTGCCATTATTG+TGG | - | Chr7:9975528-9975547 | None:intergenic | 30.0% |
| !!! | ATTGCTTTTTTTTCCTTTGC+AGG | + | Chr7:9976714-9976733 | MsG0780036575.01.T01:intron | 30.0% |
| AAGAGAGAAATGAGGAAGAA+TGG | + | Chr7:9976926-9976945 | MsG0780036575.01.T01:CDS | 35.0% | |
| CAGAGACATAGAATCTATGA+AGG | - | Chr7:9975470-9975489 | None:intergenic | 35.0% | |
| CTCGTAATCCAAAGTTTCAT+CGG | + | Chr7:9976472-9976491 | MsG0780036575.01.T01:intron | 35.0% | |
| GAATCAATTGTTGATGTTGG+CGG | + | Chr7:9975970-9975989 | MsG0780036575.01.T01:CDS | 35.0% | |
| GATGAAACTTTGGATTACGA+GGG | - | Chr7:9976473-9976492 | None:intergenic | 35.0% | |
| TCGTAATCCAAAGTTTCATC+GGG | + | Chr7:9976473-9976492 | MsG0780036575.01.T01:intron | 35.0% | |
| TGATTGCAAAAACATGAGCA+AGG | + | Chr7:9976306-9976325 | MsG0780036575.01.T01:intron | 35.0% | |
| TGTAAAGAAGCTGTTACAAG+TGG | + | Chr7:9976787-9976806 | MsG0780036575.01.T01:CDS | 35.0% | |
| TTTATCTCCCGATGAAACTT+TGG | - | Chr7:9976483-9976502 | None:intergenic | 35.0% | |
| ! | AACCATTTGACTTATGTTGG+TGG | + | Chr7:9976093-9976112 | MsG0780036575.01.T01:intron | 35.0% |
| ! | ACCATTTGACTTATGTTGGT+GGG | + | Chr7:9976094-9976113 | MsG0780036575.01.T01:intron | 35.0% |
| ! | CTGAAATTTGTTTAGCTCCA+TGG | + | Chr7:9975725-9975744 | MsG0780036575.01.T01:CDS | 35.0% |
| !! | CACTCTATTTGCTGTCATTT+AGG | + | Chr7:9975820-9975839 | MsG0780036575.01.T01:intron | 35.0% |
| !!! | CAATTTTGTTTTTGAGGGGT+TGG | + | Chr7:9975948-9975967 | MsG0780036575.01.T01:CDS | 35.0% |
| !!! | TGTTGTTTTTGATCGTCCAA+AGG | + | Chr7:9976047-9976066 | MsG0780036575.01.T01:CDS | 35.0% |
| AAAGAAGCTGTTACAAGTGG+TGG | + | Chr7:9976790-9976809 | MsG0780036575.01.T01:CDS | 40.0% | |
| AAGAAGCTGTTACAAGTGGT+GGG | + | Chr7:9976791-9976810 | MsG0780036575.01.T01:CDS | 40.0% | |
| AGCAAAACAGCATCAGCTTT+AGG | - | Chr7:9976137-9976156 | None:intergenic | 40.0% | |
| ATCAAGAACACACTCAACCA+TGG | - | Chr7:9975745-9975764 | None:intergenic | 40.0% | |
| CAAAGAATCCATTGTGTGCA+AGG | - | Chr7:9975624-9975643 | None:intergenic | 40.0% | |
| CGATGAAACTTTGGATTACG+AGG | - | Chr7:9976474-9976493 | None:intergenic | 40.0% | |
| GCTTCAGAGCTTCTTGTTAA+AGG | + | Chr7:9975700-9975719 | MsG0780036575.01.T01:CDS | 40.0% | |
| ! | CCATTTGACTTATGTTGGTG+GGG | + | Chr7:9976095-9976114 | MsG0780036575.01.T01:intron | 40.0% |
| !! | ACGTTATCGACTTTGGTTGA+TGG | - | Chr7:9975583-9975602 | None:intergenic | 40.0% |
| !!! | AGCTGATGCTGTTTTGCTTA+AGG | + | Chr7:9976139-9976158 | MsG0780036575.01.T01:intron | 40.0% |
| !!! | GCTTTTTTTTCCTTTGCAGG+CGG | + | Chr7:9976717-9976736 | MsG0780036575.01.T01:intron | 40.0% |
| ATGCGTTACCTTGCACACAA+TGG | + | Chr7:9975613-9975632 | MsG0780036575.01.T01:CDS | 45.0% | |
| CCCCACCAACATAAGTCAAA+TGG | - | Chr7:9976098-9976117 | None:intergenic | 45.0% | |
| TCAATTGTTGATGTTGGCGG+TGG | + | Chr7:9975973-9975992 | MsG0780036575.01.T01:CDS | 45.0% | |
| TCATGTAAAACCGCCTGCAA+AGG | - | Chr7:9976730-9976749 | None:intergenic | 45.0% | |
| TGTTAATCCTGCGGTGTTCA+GGG | + | Chr7:9976440-9976459 | MsG0780036575.01.T01:intron | 45.0% | |
| ! | GTTACAAGTGGTGGGAAAAG+AGG | + | Chr7:9976799-9976818 | MsG0780036575.01.T01:CDS | 45.0% |
| ! | TGCAGGCGGTTTTACATGAT+TGG | + | Chr7:9976731-9976750 | MsG0780036575.01.T01:intron | 45.0% |
| GTGTTAATCCTGCGGTGTTC+AGG | + | Chr7:9976439-9976458 | MsG0780036575.01.T01:intron | 50.0% | |
| GTTGATGTTGGCGGTGGAAA+TGG | + | Chr7:9975979-9975998 | MsG0780036575.01.T01:CDS | 50.0% | |
| !! | ACGCTGCACGTTATCGACTT+TGG | - | Chr7:9975590-9975609 | None:intergenic | 50.0% |
| GGCGGTGGAAATGGAACAAC+TGG | + | Chr7:9975988-9976007 | MsG0780036575.01.T01:CDS | 55.0% | |
| TCCTGCGGTGTTCAGGGAAA+AGG | + | Chr7:9976446-9976465 | MsG0780036575.01.T01:intron | 55.0% | |
| ! | ACCTTTTCCCTGAACACCGC+AGG | - | Chr7:9976450-9976469 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 9975460 | 9977148 | 9975460 | ID=MsG0780036575.01;Name=MsG0780036575.01 |
| Chr7 | mRNA | 9975460 | 9977148 | 9975460 | ID=MsG0780036575.01.T01;Parent=MsG0780036575.01;Name=MsG0780036575.01.T01;_AED=0.24;_eAED=0.24;_QI=0|0|0.33|1|1|1|3|140|263 |
| Chr7 | exon | 9975460 | 9975751 | 9975460 | ID=MsG0780036575.01.T01:exon:1934;Parent=MsG0780036575.01.T01 |
| Chr7 | exon | 9975842 | 9976068 | 9975842 | ID=MsG0780036575.01.T01:exon:1935;Parent=MsG0780036575.01.T01 |
| Chr7 | exon | 9976736 | 9977148 | 9976736 | ID=MsG0780036575.01.T01:exon:1936;Parent=MsG0780036575.01.T01 |
| Chr7 | CDS | 9975460 | 9975751 | 9975460 | ID=MsG0780036575.01.T01:cds;Parent=MsG0780036575.01.T01 |
| Chr7 | CDS | 9975842 | 9976068 | 9975842 | ID=MsG0780036575.01.T01:cds;Parent=MsG0780036575.01.T01 |
| Chr7 | CDS | 9976736 | 9977008 | 9976736 | ID=MsG0780036575.01.T01:cds;Parent=MsG0780036575.01.T01 |
| Chr7 | three_prime_UTR | 9977009 | 9977148 | 9977009 | ID=MsG0780036575.01.T01:three_prime_utr;Parent=MsG0780036575.01.T01 |
| Gene Sequence |
| Protein sequence |
