Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036912.01.T01 | KEH24981.1 | 83.333 | 66 | 11 | 0 | 105 | 170 | 145 | 210 | 9.98E-31 | 121 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036912.01.T01 | Q0WPF2 | 70.769 | 65 | 19 | 0 | 105 | 169 | 725 | 789 | 1.15E-27 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036912.01.T01 | A0A072U6I7 | 83.333 | 66 | 11 | 0 | 105 | 170 | 145 | 210 | 4.77e-31 | 121 |
| MsG0780036912.01.T01 | A0A834G1W5 | 80.303 | 66 | 13 | 0 | 105 | 170 | 920 | 985 | 1.92e-29 | 124 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0280011446.01 | MsG0780036912.01 | 0.814752 | 1.313104e-51 | 8.885419e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036912.01.T01 | MTR_6g011470 | 83.333 | 66 | 11 | 0 | 105 | 170 | 145 | 210 | 1.21e-34 | 121 |
| MsG0780036912.01.T01 | MTR_6g011450 | 82.540 | 63 | 11 | 0 | 108 | 170 | 613 | 675 | 9.78e-31 | 117 |
| MsG0780036912.01.T01 | MTR_6g011450 | 82.540 | 63 | 11 | 0 | 108 | 170 | 751 | 813 | 1.04e-30 | 117 |
| MsG0780036912.01.T01 | MTR_8g465040 | 68.000 | 75 | 24 | 0 | 2 | 76 | 97 | 171 | 1.21e-29 | 107 |
| MsG0780036912.01.T01 | MTR_3g452170 | 54.639 | 97 | 44 | 0 | 2 | 98 | 97 | 193 | 3.88e-27 | 105 |
| MsG0780036912.01.T01 | MTR_1g105785 | 50.000 | 96 | 48 | 0 | 2 | 97 | 97 | 192 | 7.62e-27 | 105 |
| MsG0780036912.01.T01 | MTR_7g110100 | 55.670 | 97 | 43 | 0 | 2 | 98 | 97 | 193 | 1.31e-26 | 105 |
| MsG0780036912.01.T01 | MTR_4g073340 | 75.806 | 62 | 15 | 0 | 109 | 170 | 433 | 494 | 4.59e-26 | 103 |
| MsG0780036912.01.T01 | MTR_1g051235 | 60.526 | 76 | 29 | 1 | 2 | 76 | 97 | 172 | 4.06e-24 | 92.8 |
| MsG0780036912.01.T01 | MTR_7g051840 | 54.667 | 75 | 31 | 1 | 2 | 76 | 54 | 125 | 1.50e-21 | 85.1 |
| MsG0780036912.01.T01 | MTR_5g019960 | 42.105 | 114 | 57 | 2 | 2 | 106 | 103 | 216 | 5.85e-19 | 81.3 |
| MsG0780036912.01.T01 | MTR_6g465570 | 48.000 | 75 | 39 | 0 | 2 | 76 | 93 | 167 | 1.74e-18 | 78.2 |
| MsG0780036912.01.T01 | MTR_7g045450 | 47.619 | 84 | 44 | 0 | 3 | 86 | 98 | 181 | 2.44e-18 | 79.7 |
| MsG0780036912.01.T01 | MTR_6g073570 | 47.619 | 84 | 44 | 0 | 3 | 86 | 98 | 181 | 2.44e-18 | 79.7 |
| MsG0780036912.01.T01 | MTR_8g005940 | 45.238 | 84 | 46 | 0 | 3 | 86 | 98 | 181 | 1.59e-16 | 75.5 |
| MsG0780036912.01.T01 | MTR_3g007260 | 48.780 | 82 | 42 | 0 | 15 | 96 | 70 | 151 | 2.94e-16 | 72.4 |
| MsG0780036912.01.T01 | MTR_7g451880 | 42.857 | 84 | 48 | 0 | 3 | 86 | 99 | 182 | 9.56e-16 | 73.6 |
| MsG0780036912.01.T01 | MTR_7g051400 | 46.875 | 96 | 46 | 1 | 2 | 97 | 97 | 187 | 1.32e-15 | 73.9 |
| MsG0780036912.01.T01 | MTR_3g015660 | 42.857 | 84 | 48 | 0 | 3 | 86 | 98 | 181 | 2.54e-15 | 71.2 |
| MsG0780036912.01.T01 | MTR_1g052715 | 39.583 | 96 | 57 | 1 | 2 | 96 | 56 | 151 | 3.40e-15 | 72.0 |
| MsG0780036912.01.T01 | MTR_7g074180 | 41.667 | 84 | 49 | 0 | 3 | 86 | 98 | 181 | 1.38e-14 | 70.5 |
| MsG0780036912.01.T01 | MTR_4g058660 | 41.667 | 84 | 49 | 0 | 3 | 86 | 98 | 181 | 2.26e-14 | 69.7 |
| MsG0780036912.01.T01 | MTR_0105s0080 | 40.476 | 84 | 50 | 0 | 3 | 86 | 54 | 137 | 6.51e-14 | 67.8 |
| MsG0780036912.01.T01 | MTR_5g045850 | 40.476 | 84 | 50 | 0 | 3 | 86 | 83 | 166 | 9.76e-14 | 67.8 |
| MsG0780036912.01.T01 | MTR_1g023370 | 41.667 | 84 | 49 | 0 | 3 | 86 | 98 | 181 | 1.02e-13 | 67.8 |
| MsG0780036912.01.T01 | MTR_7g024060 | 41.667 | 84 | 49 | 0 | 3 | 86 | 98 | 181 | 1.03e-13 | 67.8 |
| MsG0780036912.01.T01 | MTR_6g087820 | 41.667 | 84 | 49 | 0 | 3 | 86 | 98 | 181 | 1.03e-13 | 67.8 |
| MsG0780036912.01.T01 | MTR_5g081190 | 41.667 | 84 | 49 | 0 | 3 | 86 | 98 | 181 | 1.03e-13 | 67.8 |
| MsG0780036912.01.T01 | MTR_5g091480 | 41.667 | 84 | 49 | 0 | 3 | 86 | 98 | 181 | 1.03e-13 | 67.8 |
| MsG0780036912.01.T01 | MTR_5g056290 | 41.667 | 84 | 49 | 0 | 3 | 86 | 98 | 181 | 1.03e-13 | 67.8 |
| MsG0780036912.01.T01 | MTR_3g031190 | 41.667 | 84 | 49 | 0 | 3 | 86 | 98 | 181 | 1.03e-13 | 67.8 |
| MsG0780036912.01.T01 | MTR_2g005490 | 41.667 | 84 | 49 | 0 | 3 | 86 | 98 | 181 | 1.03e-13 | 67.8 |
| MsG0780036912.01.T01 | MTR_2g010570 | 41.667 | 84 | 49 | 0 | 3 | 86 | 98 | 181 | 1.03e-13 | 67.8 |
| MsG0780036912.01.T01 | MTR_5g030110 | 41.667 | 84 | 49 | 0 | 3 | 86 | 98 | 181 | 1.10e-13 | 67.8 |
| MsG0780036912.01.T01 | MTR_2g007410 | 41.667 | 84 | 49 | 0 | 3 | 86 | 98 | 181 | 1.10e-13 | 67.8 |
| MsG0780036912.01.T01 | MTR_8g446640 | 41.667 | 84 | 49 | 0 | 3 | 86 | 79 | 162 | 1.48e-13 | 67.4 |
| MsG0780036912.01.T01 | MTR_2g010270 | 37.634 | 93 | 49 | 1 | 3 | 86 | 79 | 171 | 3.46e-12 | 63.5 |
| MsG0780036912.01.T01 | MTR_4g017450 | 65.000 | 40 | 14 | 0 | 2 | 41 | 96 | 135 | 2.71e-11 | 58.5 |
| MsG0780036912.01.T01 | MTR_7g103840 | 47.541 | 61 | 31 | 1 | 110 | 170 | 954 | 1013 | 3.30e-11 | 61.2 |
| MsG0780036912.01.T01 | MTR_7g103840 | 47.541 | 61 | 31 | 1 | 110 | 170 | 956 | 1015 | 3.50e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036912.01.T01 | AT4G04885 | 70.769 | 65 | 19 | 0 | 105 | 169 | 725 | 789 | 1.18e-28 | 111 |
Find 33 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAACACTCTCATCAATTT+TGG | 0.201853 | 7:+16177106 | None:intergenic |
| TTATTTCATTCGGCGCTTTA+AGG | 0.260900 | 7:+16175433 | None:intergenic |
| CTGCATTTAGCATGAATAAT+GGG | 0.336904 | 7:+16175381 | None:intergenic |
| TCCATGAAGATGTACCTTGC+AGG | 0.355379 | 7:+16176032 | None:intergenic |
| TCTGCATTTAGCATGAATAA+TGG | 0.356112 | 7:+16175380 | None:intergenic |
| ATGGAAATTCAGAAGATTGA+TGG | 0.364816 | 7:-16176014 | MsG0780036912.01.T01:CDS |
| ATGCCTGTTGTTATTTCATT+CGG | 0.370130 | 7:+16175423 | None:intergenic |
| TTTACCTTTGCAGATGTCAT+TGG | 0.390875 | 7:-16176940 | MsG0780036912.01.T01:intron |
| TTAACGGAGAAAGATGTTAA+TGG | 0.395880 | 7:-16176895 | MsG0780036912.01.T01:CDS |
| GCCTGCAAGGTACATCTTCA+TGG | 0.400385 | 7:-16176033 | MsG0780036912.01.T01:CDS |
| ACAAAGTCGAAATGGTTAAC+AGG | 0.403199 | 7:+16177083 | None:intergenic |
| TAAAAGAAACAAAGTCGAAA+TGG | 0.435702 | 7:+16177075 | None:intergenic |
| TATTGAGAAGGATGTGTTAA+CGG | 0.441579 | 7:-16176911 | MsG0780036912.01.T01:CDS |
| GGCATGGACAGGTCGCTGTT+AGG | 0.459993 | 7:-16175405 | MsG0780036912.01.T01:CDS |
| ACAGTGATGAAACGGAGAAC+TGG | 0.463316 | 7:-16175476 | MsG0780036912.01.T01:CDS |
| GCGCCGAATGAAATAACAAC+AGG | 0.522849 | 7:-16175426 | MsG0780036912.01.T01:CDS |
| CGTGTCTTACAGTGATGAAA+CGG | 0.534581 | 7:-16175484 | MsG0780036912.01.T01:CDS |
| AAATAACAACAGGCATGGAC+AGG | 0.551052 | 7:-16175416 | MsG0780036912.01.T01:CDS |
| CAAAATGCATGTGCATTATG+TGG | 0.555248 | 7:-16175519 | MsG0780036912.01.T01:CDS |
| TCACTGTAAGACACGTCAAA+AGG | 0.557622 | 7:+16175492 | None:intergenic |
| TAAGCTAATTGACATAACCT+TGG | 0.559600 | 7:-16176863 | MsG0780036912.01.T01:CDS |
| AAGCTGTACGGATGAAGAGT+TGG | 0.560481 | 7:-16175562 | MsG0780036912.01.T01:CDS |
| CATTGGTCATATTATTGAGA+AGG | 0.561384 | 7:-16176923 | MsG0780036912.01.T01:CDS |
| AGGTTCGTCATGAAGCTGTA+CGG | 0.566922 | 7:-16175574 | MsG0780036912.01.T01:intron |
| TACTTACTCAGTATCTTCCA+AGG | 0.582186 | 7:+16176846 | None:intergenic |
| AACAGAGAGGATAAGCATGT+TGG | 0.592206 | 7:-16177035 | MsG0780036912.01.T01:intron |
| GAATGAAATAACAACAGGCA+TGG | 0.593565 | 7:-16175421 | MsG0780036912.01.T01:CDS |
| CTTATTTCTCAAAGCCTGCA+AGG | 0.597090 | 7:-16176046 | MsG0780036912.01.T01:CDS |
| TGCATTTAGCATGAATAATG+GGG | 0.635399 | 7:+16175382 | None:intergenic |
| ACGGAGAACTGGATGTGCAG+AGG | 0.647467 | 7:-16175465 | MsG0780036912.01.T01:CDS |
| TGATGGCAATTATTATCCTG+AGG | 0.655513 | 7:-16175997 | MsG0780036912.01.T01:intron |
| TATATTACAATCTAACAGAG+AGG | 0.701782 | 7:-16177048 | MsG0780036912.01.T01:CDS |
| GTTGGCAGTTCCGTCCGACG+AGG | 0.708375 | 7:-16175544 | MsG0780036912.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAGAGAAAATAATA+AGG | + | Chr7:16175928-16175947 | None:intergenic | 10.0% |
| !! | ATTTATTATATGGTCTAATA+AGG | - | Chr7:16176407-16176426 | MsG0780036912.01.T01:intron | 15.0% |
| !! | GTGTTTCATAATTTATTATA+TGG | - | Chr7:16176397-16176416 | MsG0780036912.01.T01:intron | 15.0% |
| !!! | AATTTTAATCAACTTCAATA+GGG | + | Chr7:16176721-16176740 | None:intergenic | 15.0% |
| !!! | GTGTTTTAATTTCATATTTT+TGG | - | Chr7:16175529-16175548 | MsG0780036912.01.T01:CDS | 15.0% |
| !! | ACAGAATACAATAACAAAAT+CGG | + | Chr7:16176880-16176899 | None:intergenic | 20.0% |
| !! | ATAATTATTGAAGTTGTTGA+GGG | - | Chr7:16176322-16176341 | MsG0780036912.01.T01:intron | 20.0% |
| !!! | GAATTTTAATCAACTTCAAT+AGG | + | Chr7:16176722-16176741 | None:intergenic | 20.0% |
| !!! | GTAATTTTTTCTCTCTTTTT+TGG | - | Chr7:16175846-16175865 | MsG0780036912.01.T01:intron | 20.0% |
| ! | AAAATTGAAAGTTGAAGTTG+CGG | + | Chr7:16175821-16175840 | None:intergenic | 25.0% |
| ! | AAACTCTTCATTATTAATGC+TGG | - | Chr7:16176767-16176786 | MsG0780036912.01.T01:intron | 25.0% |
| ! | GATAATTATTGAAGTTGTTG+AGG | - | Chr7:16176321-16176340 | MsG0780036912.01.T01:intron | 25.0% |
| ! | TAAAAGAAACAAAGTCGAAA+TGG | + | Chr7:16175445-16175464 | None:intergenic | 25.0% |
| ! | TAATTATTGAAGTTGTTGAG+GGG | - | Chr7:16176323-16176342 | MsG0780036912.01.T01:intron | 25.0% |
| ! | TATAGATGATTCTCATTTAC+CGG | + | Chr7:16176021-16176040 | None:intergenic | 25.0% |
| ! | TATATTACAATCTAACAGAG+AGG | - | Chr7:16175469-16175488 | MsG0780036912.01.T01:CDS | 25.0% |
| ! | TGTTATTGTATTCTGTTTGT+AGG | - | Chr7:16176884-16176903 | MsG0780036912.01.T01:CDS | 25.0% |
| !! | AAACTTTGATTTCTCTGAAT+TGG | + | Chr7:16176212-16176231 | None:intergenic | 25.0% |
| !! | AACTTTGATTTCTCTGAATT+GGG | + | Chr7:16176211-16176230 | None:intergenic | 25.0% |
| !! | TATAACACTCTCATCAATTT+TGG | + | Chr7:16175414-16175433 | None:intergenic | 25.0% |
| !! | TTCTGTTTGTAGGATTTTAT+TGG | - | Chr7:16176894-16176913 | MsG0780036912.01.T01:CDS | 25.0% |
| !!! | ATATTGGTATCTCCTTTTTT+TGG | + | Chr7:16176154-16176173 | None:intergenic | 25.0% |
| !!! | GAATATGCATGATTTTGATA+TGG | - | Chr7:16176253-16176272 | MsG0780036912.01.T01:intron | 25.0% |
| !!! | TAGTCTATTTTTTTCACCAT+GGG | + | Chr7:16176084-16176103 | None:intergenic | 25.0% |
| !!! | TTAGTCTATTTTTTTCACCA+TGG | + | Chr7:16176085-16176104 | None:intergenic | 25.0% |
| ATGGAAATTCAGAAGATTGA+TGG | - | Chr7:16176503-16176522 | MsG0780036912.01.T01:intron | 30.0% | |
| CATTGGTCATATTATTGAGA+AGG | - | Chr7:16175594-16175613 | MsG0780036912.01.T01:intron | 30.0% | |
| CTCTTTCATATGCTTCATAT+TGG | + | Chr7:16176170-16176189 | None:intergenic | 30.0% | |
| CTGCATTTAGCATGAATAAT+GGG | + | Chr7:16177139-16177158 | None:intergenic | 30.0% | |
| GAATATTTGGATCAAACTCA+AGG | + | Chr7:16176920-16176939 | None:intergenic | 30.0% | |
| GTTTGATCCAAATATTCTCA+AGG | - | Chr7:16176923-16176942 | MsG0780036912.01.T01:CDS | 30.0% | |
| TAAGCTAATTGACATAACCT+TGG | - | Chr7:16175654-16175673 | MsG0780036912.01.T01:intron | 30.0% | |
| TATTGAGAAGGATGTGTTAA+CGG | - | Chr7:16175606-16175625 | MsG0780036912.01.T01:intron | 30.0% | |
| TCTGCATTTAGCATGAATAA+TGG | + | Chr7:16177140-16177159 | None:intergenic | 30.0% | |
| TGCATTTAGCATGAATAATG+GGG | + | Chr7:16177138-16177157 | None:intergenic | 30.0% | |
| TTAACGGAGAAAGATGTTAA+TGG | - | Chr7:16175622-16175641 | MsG0780036912.01.T01:intron | 30.0% | |
| !! | ATGCCTGTTGTTATTTCATT+CGG | + | Chr7:16177097-16177116 | None:intergenic | 30.0% |
| !! | TAAAATGATAAGGGTACTTC+TGG | - | Chr7:16176126-16176145 | MsG0780036912.01.T01:intron | 30.0% |
| !! | TTCATTATTAATGCTGGTTC+TGG | - | Chr7:16176773-16176792 | MsG0780036912.01.T01:intron | 30.0% |
| ACAAAGTCGAAATGGTTAAC+AGG | + | Chr7:16175437-16175456 | None:intergenic | 35.0% | |
| ATGGTCTAATAAGGCTGATT+TGG | - | Chr7:16176416-16176435 | MsG0780036912.01.T01:intron | 35.0% | |
| CAAAATGCATGTGCATTATG+TGG | - | Chr7:16176998-16177017 | MsG0780036912.01.T01:intron | 35.0% | |
| CAGTTTAGTAGAAGCTGAAT+TGG | - | Chr7:16175884-16175903 | MsG0780036912.01.T01:intron | 35.0% | |
| CGTAGATTAGATTTATGTGC+CGG | - | Chr7:16175999-16176018 | MsG0780036912.01.T01:CDS | 35.0% | |
| GAATGAAATAACAACAGGCA+TGG | - | Chr7:16177096-16177115 | MsG0780036912.01.T01:CDS | 35.0% | |
| GTGGTTGTATTATTCTTCCA+GGG | - | Chr7:16176443-16176462 | MsG0780036912.01.T01:intron | 35.0% | |
| TACTTACTCAGTATCTTCCA+AGG | + | Chr7:16175674-16175693 | None:intergenic | 35.0% | |
| TGACGAACCTTGAGAATATT+TGG | + | Chr7:16176933-16176952 | None:intergenic | 35.0% | |
| TGATGGCAATTATTATCCTG+AGG | - | Chr7:16176520-16176539 | MsG0780036912.01.T01:intron | 35.0% | |
| TGTGGTTGTATTATTCTTCC+AGG | - | Chr7:16176442-16176461 | MsG0780036912.01.T01:intron | 35.0% | |
| TTATTTCATTCGGCGCTTTA+AGG | + | Chr7:16177087-16177106 | None:intergenic | 35.0% | |
| TTGAGAAATAAGACATTCCC+TGG | + | Chr7:16176463-16176482 | None:intergenic | 35.0% | |
| TTTACCTTTGCAGATGTCAT+TGG | - | Chr7:16175577-16175596 | MsG0780036912.01.T01:intron | 35.0% | |
| !! | ATAAGGCTGATTTGGTTATG+TGG | - | Chr7:16176424-16176443 | MsG0780036912.01.T01:intron | 35.0% |
| !! | TGATCAACAAAAAGTACCTC+AGG | + | Chr7:16176539-16176558 | None:intergenic | 35.0% |
| AAATAACAACAGGCATGGAC+AGG | - | Chr7:16177101-16177120 | MsG0780036912.01.T01:CDS | 40.0% | |
| AACAGAGAGGATAAGCATGT+TGG | - | Chr7:16175482-16175501 | MsG0780036912.01.T01:CDS | 40.0% | |
| ACCATGGGTAAAGCTAAACA+GGG | + | Chr7:16176069-16176088 | None:intergenic | 40.0% | |
| ACGCAATCAAGCAAAATGGA+AGG | + | Chr7:16176856-16176875 | None:intergenic | 40.0% | |
| ATGACCAATGACATCTGCAA+AGG | + | Chr7:16175584-16175603 | None:intergenic | 40.0% | |
| CATAGCAGGTCAAACACATA+TGG | + | Chr7:16175735-16175754 | None:intergenic | 40.0% | |
| CATATGTGTTTGACCTGCTA+TGG | - | Chr7:16175733-16175752 | MsG0780036912.01.T01:intron | 40.0% | |
| CGTGTCTTACAGTGATGAAA+CGG | - | Chr7:16177033-16177052 | MsG0780036912.01.T01:intron | 40.0% | |
| GTACTTCTGGCACCAAAAAA+AGG | - | Chr7:16176139-16176158 | MsG0780036912.01.T01:intron | 40.0% | |
| TAGCTCATGAGCAGATGATT+TGG | - | Chr7:16176559-16176578 | MsG0780036912.01.T01:intron | 40.0% | |
| TCACTGTAAGACACGTCAAA+AGG | + | Chr7:16177028-16177047 | None:intergenic | 40.0% | |
| TGAAGAGCAAAATCCATAGC+AGG | + | Chr7:16175749-16175768 | None:intergenic | 40.0% | |
| ! | CTTATTTCTCAAAGCCTGCA+AGG | - | Chr7:16176471-16176490 | MsG0780036912.01.T01:intron | 40.0% |
| !! | ACATGCATTTTGATCCTCGT+CGG | + | Chr7:16176990-16177009 | None:intergenic | 40.0% |
| AAGCTGTACGGATGAAGAGT+TGG | - | Chr7:16176955-16176974 | MsG0780036912.01.T01:intron | 45.0% | |
| ACAGTGATGAAACGGAGAAC+TGG | - | Chr7:16177041-16177060 | MsG0780036912.01.T01:CDS | 45.0% | |
| AGGTTCGTCATGAAGCTGTA+CGG | - | Chr7:16176943-16176962 | MsG0780036912.01.T01:intron | 45.0% | |
| CACCATGGGTAAAGCTAAAC+AGG | + | Chr7:16176070-16176089 | None:intergenic | 45.0% | |
| CCATGGGTAAAGCTAAACAG+GGG | + | Chr7:16176068-16176087 | None:intergenic | 45.0% | |
| CGGTACGCAATCAAGCAAAA+TGG | + | Chr7:16176860-16176879 | None:intergenic | 45.0% | |
| GCGCCGAATGAAATAACAAC+AGG | - | Chr7:16177091-16177110 | MsG0780036912.01.T01:CDS | 45.0% | |
| TCCATGAAGATGTACCTTGC+AGG | + | Chr7:16176488-16176507 | None:intergenic | 45.0% | |
| TTGGTCGTCGAATAATGCAG+CGG | - | Chr7:16175548-16175567 | MsG0780036912.01.T01:CDS | 45.0% | |
| !! | GTTCTGGCTTTAAGATGTCG+TGG | - | Chr7:16176789-16176808 | MsG0780036912.01.T01:intron | 45.0% |
| !! | AAAAATTTATTAAAATGATA+AGG | - | Chr7:16176116-16176135 | MsG0780036912.01.T01:intron | 5.0% |
| !! | AAAATTTATTAAAATGATAA+GGG | - | Chr7:16176117-16176136 | MsG0780036912.01.T01:intron | 5.0% |
| AAGTTGAAGTTGCGGCGATG+AGG | + | Chr7:16175813-16175832 | None:intergenic | 50.0% | |
| GCCTGCAAGGTACATCTTCA+TGG | - | Chr7:16176484-16176503 | MsG0780036912.01.T01:intron | 50.0% | |
| !! | CCCCTGTTTAGCTTTACCCA+TGG | - | Chr7:16176065-16176084 | MsG0780036912.01.T01:intron | 50.0% |
| !! | GCATTTTGATCCTCGTCGGA+CGG | + | Chr7:16176986-16177005 | None:intergenic | 50.0% |
| ACGGAGAACTGGATGTGCAG+AGG | - | Chr7:16177052-16177071 | MsG0780036912.01.T01:CDS | 55.0% | |
| TTGAAGTTGCGGCGATGAGG+TGG | + | Chr7:16175810-16175829 | None:intergenic | 55.0% | |
| GGCATGGACAGGTCGCTGTT+AGG | - | Chr7:16177112-16177131 | MsG0780036912.01.T01:CDS | 60.0% | |
| GTTGGCAGTTCCGTCCGACG+AGG | - | Chr7:16176973-16176992 | MsG0780036912.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 16175374 | 16177165 | 16175374 | ID=MsG0780036912.01;Name=MsG0780036912.01 |
| Chr7 | mRNA | 16175374 | 16177165 | 16175374 | ID=MsG0780036912.01.T01;Parent=MsG0780036912.01;Name=MsG0780036912.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.91|0.92|1|0.25|0.23|13|0|170 |
| Chr7 | exon | 16175374 | 16175581 | 16175374 | ID=MsG0780036912.01.T01:exon:11312;Parent=MsG0780036912.01.T01 |
| Chr7 | exon | 16175998 | 16176075 | 16175998 | ID=MsG0780036912.01.T01:exon:11311;Parent=MsG0780036912.01.T01 |
| Chr7 | exon | 16176853 | 16176949 | 16176853 | ID=MsG0780036912.01.T01:exon:11310;Parent=MsG0780036912.01.T01 |
| Chr7 | exon | 16177036 | 16177165 | 16177036 | ID=MsG0780036912.01.T01:exon:11309;Parent=MsG0780036912.01.T01 |
| Chr7 | CDS | 16177036 | 16177165 | 16177036 | ID=MsG0780036912.01.T01:cds;Parent=MsG0780036912.01.T01 |
| Chr7 | CDS | 16176853 | 16176949 | 16176853 | ID=MsG0780036912.01.T01:cds;Parent=MsG0780036912.01.T01 |
| Chr7 | CDS | 16175998 | 16176075 | 16175998 | ID=MsG0780036912.01.T01:cds;Parent=MsG0780036912.01.T01 |
| Chr7 | CDS | 16175374 | 16175581 | 16175374 | ID=MsG0780036912.01.T01:cds;Parent=MsG0780036912.01.T01 |
| Gene Sequence |
| Protein sequence |
