Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037002.01.T02 | XP_039683698.1 | 94.257 | 296 | 17 | 0 | 1 | 296 | 185 | 480 | 0 | 544 |
| MsG0780037002.01.T01 | XP_039683698.1 | 94.257 | 296 | 17 | 0 | 1 | 296 | 185 | 480 | 0 | 544 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037002.01.T01 | G7KYZ0 | 94.257 | 296 | 17 | 0 | 1 | 296 | 185 | 480 | 0.0 | 544 |
| MsG0780037002.01.T02 | G7KYZ0 | 94.257 | 296 | 17 | 0 | 1 | 296 | 185 | 480 | 0.0 | 544 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048588.01 | MsG0780037002.01 | 0.812269 | 4.615245e-51 | 2.921247e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037002.01.T02 | MTR_7g025650 | 94.257 | 296 | 17 | 0 | 1 | 296 | 185 | 480 | 0.0 | 544 |
| MsG0780037002.01.T02 | MTR_4g119700 | 74.915 | 295 | 70 | 3 | 1 | 292 | 172 | 465 | 1.10e-146 | 424 |
| MsG0780037002.01.T02 | MTR_8g015830 | 67.774 | 301 | 87 | 2 | 1 | 292 | 174 | 473 | 5.93e-132 | 385 |
| MsG0780037002.01.T02 | MTR_8g015830 | 67.774 | 301 | 87 | 2 | 1 | 292 | 174 | 473 | 1.66e-131 | 385 |
| MsG0780037002.01.T02 | MTR_8g015770 | 65.203 | 296 | 94 | 3 | 1 | 291 | 183 | 474 | 3.79e-122 | 361 |
| MsG0780037002.01.T02 | MTR_8g018340 | 64.333 | 300 | 96 | 3 | 1 | 291 | 165 | 462 | 7.07e-120 | 356 |
| MsG0780037002.01.T02 | MTR_8g015680 | 64.310 | 297 | 96 | 2 | 1 | 288 | 166 | 461 | 6.09e-110 | 330 |
| MsG0780037002.01.T02 | MTR_7g016460 | 61.512 | 291 | 98 | 4 | 1 | 289 | 112 | 390 | 4.12e-107 | 320 |
| MsG0780037002.01.T02 | MTR_7g025080 | 83.158 | 190 | 31 | 1 | 107 | 296 | 83 | 271 | 3.80e-97 | 290 |
| MsG0780037002.01.T02 | MTR_8g015670 | 62.673 | 217 | 79 | 2 | 61 | 276 | 83 | 298 | 3.58e-81 | 251 |
| MsG0780037002.01.T02 | MTR_6g006730 | 54.717 | 265 | 115 | 3 | 1 | 265 | 169 | 428 | 7.18e-81 | 254 |
| MsG0780037002.01.T02 | MTR_6g006740 | 57.927 | 164 | 66 | 2 | 2 | 162 | 175 | 338 | 2.63e-47 | 162 |
| MsG0780037002.01.T02 | MTR_8g015720 | 60.606 | 99 | 38 | 1 | 74 | 171 | 20 | 118 | 1.32e-25 | 103 |
| MsG0780037002.01.T02 | MTR_2g100590 | 26.341 | 205 | 135 | 5 | 23 | 224 | 216 | 407 | 3.20e-12 | 67.0 |
| MsG0780037002.01.T02 | MTR_2g100590 | 26.341 | 205 | 135 | 5 | 23 | 224 | 216 | 407 | 3.27e-12 | 67.0 |
| MsG0780037002.01.T02 | MTR_2g100590 | 26.341 | 205 | 135 | 5 | 23 | 224 | 216 | 407 | 6.32e-12 | 66.6 |
| MsG0780037002.01.T01 | MTR_7g025650 | 94.257 | 296 | 17 | 0 | 1 | 296 | 185 | 480 | 0.0 | 544 |
| MsG0780037002.01.T01 | MTR_4g119700 | 74.915 | 295 | 70 | 3 | 1 | 292 | 172 | 465 | 1.10e-146 | 424 |
| MsG0780037002.01.T01 | MTR_8g015830 | 67.774 | 301 | 87 | 2 | 1 | 292 | 174 | 473 | 5.93e-132 | 385 |
| MsG0780037002.01.T01 | MTR_8g015830 | 67.774 | 301 | 87 | 2 | 1 | 292 | 174 | 473 | 1.66e-131 | 385 |
| MsG0780037002.01.T01 | MTR_8g015770 | 65.203 | 296 | 94 | 3 | 1 | 291 | 183 | 474 | 3.79e-122 | 361 |
| MsG0780037002.01.T01 | MTR_8g018340 | 64.333 | 300 | 96 | 3 | 1 | 291 | 165 | 462 | 7.07e-120 | 356 |
| MsG0780037002.01.T01 | MTR_8g015680 | 64.310 | 297 | 96 | 2 | 1 | 288 | 166 | 461 | 6.09e-110 | 330 |
| MsG0780037002.01.T01 | MTR_7g016460 | 61.512 | 291 | 98 | 4 | 1 | 289 | 112 | 390 | 4.12e-107 | 320 |
| MsG0780037002.01.T01 | MTR_7g025080 | 83.158 | 190 | 31 | 1 | 107 | 296 | 83 | 271 | 3.80e-97 | 290 |
| MsG0780037002.01.T01 | MTR_8g015670 | 62.673 | 217 | 79 | 2 | 61 | 276 | 83 | 298 | 3.58e-81 | 251 |
| MsG0780037002.01.T01 | MTR_6g006730 | 54.717 | 265 | 115 | 3 | 1 | 265 | 169 | 428 | 7.18e-81 | 254 |
| MsG0780037002.01.T01 | MTR_6g006740 | 57.927 | 164 | 66 | 2 | 2 | 162 | 175 | 338 | 2.63e-47 | 162 |
| MsG0780037002.01.T01 | MTR_8g015720 | 60.606 | 99 | 38 | 1 | 74 | 171 | 20 | 118 | 1.32e-25 | 103 |
| MsG0780037002.01.T01 | MTR_2g100590 | 26.341 | 205 | 135 | 5 | 23 | 224 | 216 | 407 | 3.20e-12 | 67.0 |
| MsG0780037002.01.T01 | MTR_2g100590 | 26.341 | 205 | 135 | 5 | 23 | 224 | 216 | 407 | 3.27e-12 | 67.0 |
| MsG0780037002.01.T01 | MTR_2g100590 | 26.341 | 205 | 135 | 5 | 23 | 224 | 216 | 407 | 6.32e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 65 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATCTACATTGATTATT+TGG | 0.126828 | 7:-17996732 | MsG0780037002.01.T01:CDS |
| CTTAAGGTGTTGGAGTTATC+TGG | 0.271166 | 7:-17996884 | MsG0780037002.01.T01:CDS |
| GTCATTGTGGATTGTTCTTC+TGG | 0.278938 | 7:-17997317 | MsG0780037002.01.T01:CDS |
| TACATTGATTATTTGGATCT+TGG | 0.279262 | 7:-17996725 | MsG0780037002.01.T01:CDS |
| ATATTATTGTCATGATGTTT+TGG | 0.286935 | 7:-17997092 | MsG0780037002.01.T01:CDS |
| TGTTGACCTCTTTCATGTTA+TGG | 0.292423 | 7:+17996858 | None:intergenic |
| CTTCTTACAAAAGAAATAAT+AGG | 0.308664 | 7:+17996779 | None:intergenic |
| CTATCAAAATGAATCTTATA+TGG | 0.325709 | 7:+17997064 | None:intergenic |
| TATTCACATGACAATAGATT+TGG | 0.337789 | 7:+17996827 | None:intergenic |
| TTAACATCATTCGTTGATAA+GGG | 0.339518 | 7:+17997690 | None:intergenic |
| TGGAACTGTTTGACAGAAAT+CGG | 0.340681 | 7:-17998195 | MsG0780037002.01.T01:five_prime_UTR |
| TTTAACATCATTCGTTGATA+AGG | 0.340772 | 7:+17997689 | None:intergenic |
| CTCAAGACAGTTGATGTTCA+TGG | 0.347261 | 7:-17997157 | MsG0780037002.01.T01:CDS |
| TATTTCAAGTGTTCAACTTA+AGG | 0.351854 | 7:-17996900 | MsG0780037002.01.T01:CDS |
| ATGCATGCTCAAACACTTCA+TGG | 0.393356 | 7:+17997192 | None:intergenic |
| ACATCAACTGTCTTGAGCTT+TGG | 0.421237 | 7:+17997163 | None:intergenic |
| TTTGGATCTTGGTAACTTGA+AGG | 0.426673 | 7:-17996714 | MsG0780037002.01.T01:CDS |
| AAAACTGTGATTGAATGAAT+AGG | 0.430225 | 7:-17998165 | MsG0780037002.01.T01:five_prime_UTR |
| CGAAAGCTTGGGCAGATACA+TGG | 0.432901 | 7:-17997764 | MsG0780037002.01.T01:five_prime_UTR |
| ATGACCTTCGTCAATGTAGT+TGG | 0.446301 | 7:+17997470 | None:intergenic |
| GTCCTAGCAGCATCTTTCTC+TGG | 0.450082 | 7:+17997798 | None:intergenic |
| ACTTACCAAGTTGGTGTTGA+AGG | 0.452538 | 7:-17997403 | MsG0780037002.01.T01:five_prime_UTR |
| CTGATAATAAATTCACGGAT+TGG | 0.458107 | 7:-17997716 | MsG0780037002.01.T01:five_prime_UTR |
| GATAGTTGCAGAAATTTGAA+AGG | 0.472029 | 7:-17997046 | MsG0780037002.01.T01:CDS |
| TGTCAAAGCATGTTGACCTT+TGG | 0.486993 | 7:-17997551 | MsG0780037002.01.T01:five_prime_UTR |
| AAGTGTTCAACTTAAGGTGT+TGG | 0.488013 | 7:-17996894 | MsG0780037002.01.T01:CDS |
| TTACACTTGTTCTCTTTGAA+AGG | 0.492916 | 7:-17997022 | MsG0780037002.01.T01:CDS |
| AGCAAAATCACTTACCAAGT+TGG | 0.493745 | 7:-17997412 | MsG0780037002.01.T01:five_prime_UTR |
| GAGAATCACGCTGAGGGAGA+AGG | 0.504951 | 7:-17998225 | None:intergenic |
| CTTACCAAGTTGGTGTTGAA+GGG | 0.507173 | 7:-17997402 | MsG0780037002.01.T01:five_prime_UTR |
| ATAGTTGCAGAAATTTGAAA+GGG | 0.510548 | 7:-17997045 | MsG0780037002.01.T01:CDS |
| TGACCTTCGTCAATGTAGTT+GGG | 0.522492 | 7:+17997471 | None:intergenic |
| TAATATAGATACTCAAGACT+TGG | 0.530379 | 7:+17997109 | None:intergenic |
| GTAATACTATCACAGACAAA+TGG | 0.533043 | 7:-17997000 | MsG0780037002.01.T01:CDS |
| CATTGAGAGTATTGTCATTG+TGG | 0.534272 | 7:-17997330 | MsG0780037002.01.T01:CDS |
| TGTTGACCTTTGGTTGAAGT+CGG | 0.539669 | 7:-17997541 | MsG0780037002.01.T01:five_prime_UTR |
| AGAATCACGCTGAGGGAGAA+GGG | 0.551610 | 7:-17998224 | None:intergenic |
| TTTGCTTCAATTACACCTGT+CGG | 0.556051 | 7:+17997429 | None:intergenic |
| TAATCATAAATGTGCAGCAA+AGG | 0.557201 | 7:+17997922 | None:intergenic |
| CTAGAGCTTTGTTTGCCATG+TGG | 0.568925 | 7:-17997495 | MsG0780037002.01.T01:five_prime_UTR |
| CTTTGGTTGAAGTCGGCAAG+TGG | 0.571020 | 7:-17997534 | MsG0780037002.01.T01:five_prime_UTR |
| AATTTCAATCTCTCAATGAA+AGG | 0.571803 | 7:+17996953 | None:intergenic |
| AACTACATTGACGAAGGTCA+TGG | 0.572265 | 7:-17997468 | MsG0780037002.01.T01:five_prime_UTR |
| AAAGTTATATGCTCAATGAA+AGG | 0.574623 | 7:+17997256 | None:intergenic |
| TGCATGCTCAAACACTTCAT+GGG | 0.579151 | 7:+17997193 | None:intergenic |
| GGAACTGTTTGACAGAAATC+GGG | 0.581299 | 7:-17998194 | MsG0780037002.01.T01:five_prime_UTR |
| GGGATTGAGAATCACGCTGA+GGG | 0.586352 | 7:-17998231 | None:intergenic |
| TTTCACTACAGAAATGAAGC+AGG | 0.586561 | 7:-17997877 | MsG0780037002.01.T01:intron |
| AATATAGATACTCAAGACTT+GGG | 0.587007 | 7:+17997110 | None:intergenic |
| TGATGTTCATGGAATACAAG+AGG | 0.588977 | 7:-17997146 | MsG0780037002.01.T01:CDS |
| TGGTTGCCATAACATGAAAG+AGG | 0.598070 | 7:-17996864 | MsG0780037002.01.T01:CDS |
| ACCAAGTTGGTGTTGAAGGG+GGG | 0.603039 | 7:-17997399 | MsG0780037002.01.T01:five_prime_UTR |
| TCACGCTGAGGGAGAAGGGT+CGG | 0.603926 | 7:-17998220 | MsG0780037002.01.T01:five_prime_UTR |
| CACTTGCCGACTTCAACCAA+AGG | 0.606331 | 7:+17997535 | None:intergenic |
| TTACCAAGTTGGTGTTGAAG+GGG | 0.611404 | 7:-17997401 | MsG0780037002.01.T01:five_prime_UTR |
| TACCAAGTTGGTGTTGAAGG+GGG | 0.612731 | 7:-17997400 | MsG0780037002.01.T01:five_prime_UTR |
| TCAATGTAGTTGGGACCACA+TGG | 0.619188 | 7:+17997480 | None:intergenic |
| TGCCAGAGAAAGATGCTGCT+AGG | 0.622523 | 7:-17997800 | MsG0780037002.01.T01:five_prime_UTR |
| ATGAAGTGTTTGAGCATGCA+TGG | 0.622625 | 7:-17997190 | MsG0780037002.01.T01:CDS |
| CTGAGGGAGAAGGGTCGGTG+TGG | 0.634505 | 7:-17998215 | MsG0780037002.01.T01:five_prime_UTR |
| ATGTGACGAGAACATTGTCG+AGG | 0.640187 | 7:-17997641 | MsG0780037002.01.T01:five_prime_UTR |
| CACTACAGAAATGAAGCAGG+AGG | 0.655002 | 7:-17997874 | MsG0780037002.01.T01:intron |
| ATTCATCTTTGAGCTAACTG+AGG | 0.668486 | 7:-17996642 | MsG0780037002.01.T01:intron |
| AGGGATTGAGAATCACGCTG+AGG | 0.671369 | 7:-17998232 | None:intergenic |
| GGTCCCAACTACATTGACGA+AGG | 0.735719 | 7:-17997474 | MsG0780037002.01.T01:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCAGAAAAAGATAATAT+AGG | + | Chr7:17996845-17996864 | None:intergenic | 15.0% |
| !!! | AATACAAAGTTTCTTTTTTT+GGG | + | Chr7:17998114-17998133 | None:intergenic | 15.0% |
| !!! | TTTTTCTGATAATAAATTCA+CGG | - | Chr7:17996853-17996872 | MsG0780037002.01.T01:CDS | 15.0% |
| !! | AATAATTTAAGAAATCGAAG+TGG | + | Chr7:17996606-17996625 | None:intergenic | 20.0% |
| !! | CTATCAAAATGAATCTTATA+TGG | + | Chr7:17997513-17997532 | None:intergenic | 20.0% |
| !! | CTTCTTACAAAAGAAATAAT+AGG | + | Chr7:17997798-17997817 | None:intergenic | 20.0% |
| !!! | ATATTATTGTCATGATGTTT+TGG | - | Chr7:17997482-17997501 | MsG0780037002.01.T01:five_prime_UTR | 20.0% |
| !!! | GAATACAAAGTTTCTTTTTT+TGG | + | Chr7:17998115-17998134 | None:intergenic | 20.0% |
| !!! | TCAAATCTACATTGATTATT+TGG | - | Chr7:17997842-17997861 | MsG0780037002.01.T01:five_prime_UTR | 20.0% |
| ! | AAAACTGTGATTGAATGAAT+AGG | - | Chr7:17996409-17996428 | MsG0780037002.01.T01:CDS | 25.0% |
| ! | AAAGTTATATGCTCAATGAA+AGG | + | Chr7:17997321-17997340 | None:intergenic | 25.0% |
| ! | AATATAGATACTCAAGACTT+GGG | + | Chr7:17997467-17997486 | None:intergenic | 25.0% |
| ! | AATTTCAATCTCTCAATGAA+AGG | + | Chr7:17997624-17997643 | None:intergenic | 25.0% |
| ! | ATAGTTGCAGAAATTTGAAA+GGG | - | Chr7:17997529-17997548 | MsG0780037002.01.T01:five_prime_UTR | 25.0% |
| ! | ATGTAACTAACTACATGTTT+AGG | + | Chr7:17996579-17996598 | None:intergenic | 25.0% |
| ! | TAATATAGATACTCAAGACT+TGG | + | Chr7:17997468-17997487 | None:intergenic | 25.0% |
| ! | TATTCACATGACAATAGATT+TGG | + | Chr7:17997750-17997769 | None:intergenic | 25.0% |
| ! | TTTAACATCATTCGTTGATA+AGG | + | Chr7:17996888-17996907 | None:intergenic | 25.0% |
| !! | ATGTGATGAAGAATGATTTT+CGG | + | Chr7:17996743-17996762 | None:intergenic | 25.0% |
| !! | TACATTGATTATTTGGATCT+TGG | - | Chr7:17997849-17997868 | MsG0780037002.01.T01:five_prime_UTR | 25.0% |
| !! | TATTTCAAGTGTTCAACTTA+AGG | - | Chr7:17997674-17997693 | MsG0780037002.01.T01:five_prime_UTR | 25.0% |
| !! | TTAACATCATTCGTTGATAA+GGG | + | Chr7:17996887-17996906 | None:intergenic | 25.0% |
| AATTCATCCTACACAATACA+GGG | + | Chr7:17998025-17998044 | None:intergenic | 30.0% | |
| CTGATAATAAATTCACGGAT+TGG | - | Chr7:17996858-17996877 | MsG0780037002.01.T01:CDS | 30.0% | |
| GATAGTTGCAGAAATTTGAA+AGG | - | Chr7:17997528-17997547 | MsG0780037002.01.T01:five_prime_UTR | 30.0% | |
| GTAATACTATCACAGACAAA+TGG | - | Chr7:17997574-17997593 | MsG0780037002.01.T01:five_prime_UTR | 30.0% | |
| TAATCATAAATGTGCAGCAA+AGG | + | Chr7:17996655-17996674 | None:intergenic | 30.0% | |
| TTACACTTGTTCTCTTTGAA+AGG | - | Chr7:17997552-17997571 | MsG0780037002.01.T01:five_prime_UTR | 30.0% | |
| ! | AGTGATGTCAAAACATTTTC+AGG | + | Chr7:17997906-17997925 | None:intergenic | 30.0% |
| ! | TTCTTCATCACATTTTGTCA+AGG | - | Chr7:17996750-17996769 | MsG0780037002.01.T01:CDS | 30.0% |
| !!! | CATTTTCAGGTTTGATGTTT+TGG | + | Chr7:17997893-17997912 | None:intergenic | 30.0% |
| AAGTGTTCAACTTAAGGTGT+TGG | - | Chr7:17997680-17997699 | MsG0780037002.01.T01:five_prime_UTR | 35.0% | |
| AGCAAAATCACTTACCAAGT+TGG | - | Chr7:17997162-17997181 | MsG0780037002.01.T01:CDS | 35.0% | |
| ATGAAACTTGAAATACCGCA+GGG | + | Chr7:17998051-17998070 | None:intergenic | 35.0% | |
| ATTCATCTTTGAGCTAACTG+AGG | - | Chr7:17997932-17997951 | MsG0780037002.01.T01:intron | 35.0% | |
| GAATTCATCCTACACAATAC+AGG | + | Chr7:17998026-17998045 | None:intergenic | 35.0% | |
| TGATGTTCATGGAATACAAG+AGG | - | Chr7:17997428-17997447 | MsG0780037002.01.T01:five_prime_UTR | 35.0% | |
| TGGAACTGTTTGACAGAAAT+CGG | - | Chr7:17996379-17996398 | MsG0780037002.01.T01:CDS | 35.0% | |
| TGTTGACCTCTTTCATGTTA+TGG | + | Chr7:17997719-17997738 | None:intergenic | 35.0% | |
| TTACTTACCCTGTATTGTGT+AGG | - | Chr7:17998015-17998034 | MsG0780037002.01.T01:intron | 35.0% | |
| TTTCACTACAGAAATGAAGC+AGG | - | Chr7:17996697-17996716 | MsG0780037002.01.T01:CDS | 35.0% | |
| TTTGCTTCAATTACACCTGT+CGG | + | Chr7:17997148-17997167 | None:intergenic | 35.0% | |
| ! | AAATGCTATGTTTTACCGAC+AGG | - | Chr7:17997130-17997149 | MsG0780037002.01.T01:CDS | 35.0% |
| ! | AAGTGTTTTGTCGAAAGCTT+GGG | - | Chr7:17996799-17996818 | MsG0780037002.01.T01:CDS | 35.0% |
| ! | TTTGGATCTTGGTAACTTGA+AGG | - | Chr7:17997860-17997879 | MsG0780037002.01.T01:five_prime_UTR | 35.0% |
| ! | TTTTCGGTAGAATCGACAAT+CGG | + | Chr7:17996727-17996746 | None:intergenic | 35.0% |
| !! | CATTGAGAGTATTGTCATTG+TGG | - | Chr7:17997244-17997263 | MsG0780037002.01.T01:CDS | 35.0% |
| AACTACATTGACGAAGGTCA+TGG | - | Chr7:17997106-17997125 | MsG0780037002.01.T01:CDS | 40.0% | |
| ACATCAACTGTCTTGAGCTT+TGG | + | Chr7:17997414-17997433 | None:intergenic | 40.0% | |
| ATGACCTTCGTCAATGTAGT+TGG | + | Chr7:17997107-17997126 | None:intergenic | 40.0% | |
| ATGCATGCTCAAACACTTCA+TGG | + | Chr7:17997385-17997404 | None:intergenic | 40.0% | |
| GATGAAACTTGAAATACCGC+AGG | + | Chr7:17998052-17998071 | None:intergenic | 40.0% | |
| GGAACTGTTTGACAGAAATC+GGG | - | Chr7:17996380-17996399 | MsG0780037002.01.T01:CDS | 40.0% | |
| TGACCTTCGTCAATGTAGTT+GGG | + | Chr7:17997106-17997125 | None:intergenic | 40.0% | |
| TGCATGCTCAAACACTTCAT+GGG | + | Chr7:17997384-17997403 | None:intergenic | 40.0% | |
| TGGTTGCCATAACATGAAAG+AGG | - | Chr7:17997710-17997729 | MsG0780037002.01.T01:five_prime_UTR | 40.0% | |
| TGTCAAAGCATGTTGACCTT+TGG | - | Chr7:17997023-17997042 | MsG0780037002.01.T01:CDS | 40.0% | |
| TGTTGACCTTTGGTTGAAGT+CGG | - | Chr7:17997033-17997052 | MsG0780037002.01.T01:CDS | 40.0% | |
| ! | ATGAAGTGTTTGAGCATGCA+TGG | - | Chr7:17997384-17997403 | MsG0780037002.01.T01:five_prime_UTR | 40.0% |
| ! | CAAGTGTTTTGTCGAAAGCT+TGG | - | Chr7:17996798-17996817 | MsG0780037002.01.T01:CDS | 40.0% |
| ! | CTCAAGACAGTTGATGTTCA+TGG | - | Chr7:17997417-17997436 | MsG0780037002.01.T01:five_prime_UTR | 40.0% |
| ! | GTCATTGTGGATTGTTCTTC+TGG | - | Chr7:17997257-17997276 | MsG0780037002.01.T01:CDS | 40.0% |
| !! | ACTTACCAAGTTGGTGTTGA+AGG | - | Chr7:17997171-17997190 | MsG0780037002.01.T01:CDS | 40.0% |
| !! | AGTTGTTGCTTTGCAACTAG+AGG | - | Chr7:17998160-17998179 | MsG0780037002.01.T01:five_prime_UTR | 40.0% |
| !! | CTTAAGGTGTTGGAGTTATC+TGG | - | Chr7:17997690-17997709 | MsG0780037002.01.T01:five_prime_UTR | 40.0% |
| !! | CTTACCAAGTTGGTGTTGAA+GGG | - | Chr7:17997172-17997191 | MsG0780037002.01.T01:CDS | 40.0% |
| !! | GAGGTTTTGTGATCAAGGAT+TGG | - | Chr7:17996952-17996971 | MsG0780037002.01.T01:CDS | 40.0% |
| !! | TGCAACTAGAGGTGTCAAAT+GGG | - | Chr7:17998171-17998190 | MsG0780037002.01.T01:five_prime_UTR | 40.0% |
| !! | TTACCAAGTTGGTGTTGAAG+GGG | - | Chr7:17997173-17997192 | MsG0780037002.01.T01:CDS | 40.0% |
| !! | TTGCAACTAGAGGTGTCAAA+TGG | - | Chr7:17998170-17998189 | MsG0780037002.01.T01:five_prime_UTR | 40.0% |
| !! | TTGTCGAGGTTTTGTGATCA+AGG | - | Chr7:17996947-17996966 | MsG0780037002.01.T01:CDS | 40.0% |
| ACATGCAAGTGCTTGACGTT+TGG | + | Chr7:17998082-17998101 | None:intergenic | 45.0% | |
| ATGTGACGAGAACATTGTCG+AGG | - | Chr7:17996933-17996952 | MsG0780037002.01.T01:CDS | 45.0% | |
| CACTACAGAAATGAAGCAGG+AGG | - | Chr7:17996700-17996719 | MsG0780037002.01.T01:CDS | 45.0% | |
| GTAGGATGAATTCAACCCTG+CGG | - | Chr7:17998033-17998052 | MsG0780037002.01.T01:intron | 45.0% | |
| TCAATGTAGTTGGGACCACA+TGG | + | Chr7:17997097-17997116 | None:intergenic | 45.0% | |
| !! | CTAGAGCTTTGTTTGCCATG+TGG | - | Chr7:17997079-17997098 | MsG0780037002.01.T01:CDS | 45.0% |
| !! | TACCAAGTTGGTGTTGAAGG+GGG | - | Chr7:17997174-17997193 | MsG0780037002.01.T01:CDS | 45.0% |
| CGAAAGCTTGGGCAGATACA+TGG | - | Chr7:17996810-17996829 | MsG0780037002.01.T01:CDS | 50.0% | |
| CTTTGGTTGAAGTCGGCAAG+TGG | - | Chr7:17997040-17997059 | MsG0780037002.01.T01:CDS | 50.0% | |
| GGTCCCAACTACATTGACGA+AGG | - | Chr7:17997100-17997119 | MsG0780037002.01.T01:CDS | 50.0% | |
| GTCCTAGCAGCATCTTTCTC+TGG | + | Chr7:17996779-17996798 | None:intergenic | 50.0% | |
| TGCAAGTGCTTGACGTTTGG+TGG | + | Chr7:17998079-17998098 | None:intergenic | 50.0% | |
| TGCCAGAGAAAGATGCTGCT+AGG | - | Chr7:17996774-17996793 | MsG0780037002.01.T01:CDS | 50.0% | |
| ! | AAGTGCTTGACGTTTGGTGG+AGG | + | Chr7:17998076-17998095 | None:intergenic | 50.0% |
| ! | AGTGCTTGACGTTTGGTGGA+GGG | + | Chr7:17998075-17998094 | None:intergenic | 50.0% |
| !! | ACCAAGTTGGTGTTGAAGGG+GGG | - | Chr7:17997175-17997194 | MsG0780037002.01.T01:CDS | 50.0% |
| !! | ACTAGAGGTGTCAAATGGGC+TGG | - | Chr7:17998175-17998194 | MsG0780037002.01.T01:five_prime_UTR | 50.0% |
| !! | CACTTGCCGACTTCAACCAA+AGG | + | Chr7:17997042-17997061 | None:intergenic | 50.0% |
| !!! | CGTTGTTCAGTTTTGAGCCC+GGG | - | Chr7:17997345-17997364 | MsG0780037002.01.T01:CDS | 50.0% |
| !!! | GCGTTGTTCAGTTTTGAGCC+CGG | - | Chr7:17997344-17997363 | MsG0780037002.01.T01:CDS | 50.0% |
| TCCCCCCTTCAACACCAACT+TGG | + | Chr7:17997179-17997198 | None:intergenic | 55.0% | |
| TTATGTAGTCGGGCCTCTCG+GGG | + | Chr7:17998221-17998240 | None:intergenic | 55.0% | |
| ! | GTGCTTGACGTTTGGTGGAG+GGG | + | Chr7:17998074-17998093 | None:intergenic | 55.0% |
| !!! | TGTTCAGTTTTGAGCCCGGG+AGG | - | Chr7:17997348-17997367 | MsG0780037002.01.T01:CDS | 55.0% |
| ! | ATGGGTTTTACGCCGCCTCC+CGG | + | Chr7:17997366-17997385 | None:intergenic | 60.0% |
| !! | AGGTGTCAAATGGGCTGGCC+TGG | - | Chr7:17998180-17998199 | MsG0780037002.01.T01:five_prime_UTR | 60.0% |
| !!! | TCAGTTTTGAGCCCGGGAGG+CGG | - | Chr7:17997351-17997370 | MsG0780037002.01.T01:CDS | 60.0% |
| CTGAGGGAGAAGGGTCGGTG+TGG | - | Chr7:17996359-17996378 | MsG0780037002.01.T01:CDS | 65.0% | |
| ! | TGGGTTTTACGCCGCCTCCC+GGG | + | Chr7:17997365-17997384 | None:intergenic | 65.0% |
| GTAGTCGGGCCTCTCGGGGC+CGG | + | Chr7:17998217-17998236 | None:intergenic | 75.0% | |
| TAGTCGGGCCTCTCGGGGCC+GGG | + | Chr7:17998216-17998235 | None:intergenic | 75.0% | |
| !!! | TGGGCTGGCCTGGCCCAGCC+CGG | - | Chr7:17998190-17998209 | MsG0780037002.01.T01:five_prime_UTR | 80.0% |
| ! | TCTCGGGGCCGGGCCGGGCT+GGG | + | Chr7:17998206-17998225 | None:intergenic | 85.0% |
| ! | TGGCCTGGCCCAGCCCGGCC+CGG | - | Chr7:17998195-17998214 | MsG0780037002.01.T01:five_prime_UTR | 85.0% |
| ! | CAGCCCGGCCCGGCCCCGAG+AGG | - | Chr7:17998205-17998224 | MsG0780037002.01.T01:five_prime_UTR | 90.0% |
| ! | CGGGCCTCTCGGGGCCGGGC+CGG | + | Chr7:17998212-17998231 | None:intergenic | 90.0% |
| ! | CTCTCGGGGCCGGGCCGGGC+TGG | + | Chr7:17998207-17998226 | None:intergenic | 90.0% |
| ! | GGGCCTCTCGGGGCCGGGCC+GGG | + | Chr7:17998211-17998230 | None:intergenic | 90.0% |
| !! | GGGCCGGGCCGGGCTGGGCC+AGG | + | Chr7:17998201-17998220 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 17996356 | 17998240 | 17996356 | ID=MsG0780037002.01;Name=MsG0780037002.01 |
| Chr7 | mRNA | 17996356 | 17998240 | 17996356 | ID=MsG0780037002.01.T01;Parent=MsG0780037002.01;Name=MsG0780037002.01.T01;_AED=0.25;_eAED=0.25;_QI=603|1|0.66|1|0.5|0.33|3|0|312 |
| Chr7 | exon | 17996643 | 17997888 | 17996643 | ID=MsG0780037002.01.T01:exon:3338;Parent=MsG0780037002.01.T01 |
| Chr7 | exon | 17998149 | 17998240 | 17998149 | ID=MsG0780037002.01.T01:exon:3337;Parent=MsG0780037002.01.T01 |
| Chr7 | five_prime_UTR | 17998149 | 17998240 | 17998149 | ID=MsG0780037002.01.T01:five_prime_utr;Parent=MsG0780037002.01.T01 |
| Chr7 | five_prime_UTR | 17997378 | 17997888 | 17997378 | ID=MsG0780037002.01.T01:five_prime_utr;Parent=MsG0780037002.01.T01 |
| Chr7 | CDS | 17996643 | 17997377 | 17996643 | ID=MsG0780037002.01.T01:cds;Parent=MsG0780037002.01.T01 |
| Chr7 | CDS | 17996356 | 17996559 | 17996356 | ID=MsG0780037002.01.T01:cds;Parent=MsG0780037002.01.T01 |
| Chr7 | mRNA | 17996356 | 17997976 | 17996356 | ID=MsG0780037002.01.T02;Parent=MsG0780037002.01;Name=MsG0780037002.01.T02;_AED=0.25;_eAED=0.25;_QI=599|1|0.5|1|1|1|2|0|312 |
| Chr7 | exon | 17996643 | 17997976 | 17996643 | ID=MsG0780037002.01.T02:exon:3340;Parent=MsG0780037002.01.T02 |
| Chr7 | five_prime_UTR | 17997378 | 17997976 | 17997378 | ID=MsG0780037002.01.T02:five_prime_utr;Parent=MsG0780037002.01.T02 |
| Chr7 | CDS | 17996643 | 17997377 | 17996643 | ID=MsG0780037002.01.T02:cds;Parent=MsG0780037002.01.T02 |
| Chr7 | CDS | 17996356 | 17996559 | 17996356 | ID=MsG0780037002.01.T02:cds;Parent=MsG0780037002.01.T02 |
| Gene Sequence |
| Protein sequence |
