Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048588.01.T01 | XP_039683698.1 | 87.759 | 482 | 37 | 2 | 1 | 460 | 76 | 557 | 0 | 823 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048588.01.T01 | G7KYZ0 | 87.759 | 482 | 37 | 2 | 1 | 460 | 76 | 557 | 0.0 | 823 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047912.01 | MsG0080048588.01 | 0.801937 | 7.113600e-49 | 3.440325e-46 |
| MsG0080048588.01 | MsG0180001566.01 | 0.811401 | 7.130367e-51 | 4.409619e-48 |
| MsG0080048588.01 | MsG0180001911.01 | 0.817117 | 3.894663e-52 | 2.811365e-49 |
| MsG0080048588.01 | MsG0180002075.01 | 0.820629 | 6.199373e-53 | 4.930807e-50 |
| MsG0080048588.01 | MsG0180004388.01 | 0.802477 | 5.508274e-49 | 2.700839e-46 |
| MsG0080048588.01 | MsG0180005944.01 | 0.801425 | 9.058475e-49 | 4.324545e-46 |
| MsG0080048588.01 | MsG0180006023.01 | 0.818442 | 1.956332e-52 | 1.464676e-49 |
| MsG0080048588.01 | MsG0280007609.01 | 0.821349 | 4.234110e-53 | 3.436144e-50 |
| MsG0080048588.01 | MsG0280008270.01 | 0.806308 | 8.761102e-50 | 4.739544e-47 |
| MsG0080048588.01 | MsG0280010553.01 | 0.807648 | 4.561091e-50 | 2.554292e-47 |
| MsG0080048588.01 | MsG0280011293.01 | 0.815893 | 7.321644e-52 | 5.110811e-49 |
| MsG0080048588.01 | MsG0380016227.01 | 0.800418 | 1.455038e-48 | 6.771725e-46 |
| MsG0080048588.01 | MsG0380018009.01 | 0.809581 | 1.762623e-50 | 1.038899e-47 |
| MsG0080048588.01 | MsG0480018637.01 | 0.809164 | 2.166362e-50 | 1.262686e-47 |
| MsG0080048588.01 | MsG0480019871.01 | 0.821627 | 3.651601e-53 | 2.986438e-50 |
| MsG0080048588.01 | MsG0480020242.01 | 0.803468 | 3.436600e-49 | 1.728276e-46 |
| MsG0080048588.01 | MsG0480022480.01 | 0.801363 | 9.326003e-49 | 4.445468e-46 |
| MsG0080048588.01 | MsG0580026595.01 | 0.817657 | 2.943388e-52 | 2.156448e-49 |
| MsG0080048588.01 | MsG0780037002.01 | 0.812269 | 4.615245e-51 | 2.921247e-48 |
| MsG0080048588.01 | MsG0780040488.01 | 0.806738 | 7.111286e-50 | 3.889554e-47 |
| MsG0080048588.01 | MsG0780041469.01 | 0.805672 | 1.192151e-49 | 6.345280e-47 |
| MsG0080048588.01 | MsG0780041671.01 | 0.825895 | 3.652021e-54 | 3.372560e-51 |
| MsG0080048588.01 | MsG0880046669.01 | 0.804559 | 2.038509e-49 | 1.054315e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048588.01.T01 | MTR_7g025650 | 87.759 | 482 | 37 | 2 | 1 | 460 | 76 | 557 | 0.0 | 823 |
| MsG0080048588.01.T01 | MTR_4g119700 | 71.901 | 484 | 110 | 5 | 2 | 460 | 64 | 546 | 0.0 | 663 |
| MsG0080048588.01.T01 | MTR_8g015830 | 63.934 | 488 | 141 | 5 | 4 | 459 | 68 | 552 | 0.0 | 575 |
| MsG0080048588.01.T01 | MTR_8g015830 | 66.348 | 419 | 125 | 3 | 4 | 407 | 68 | 485 | 0.0 | 521 |
| MsG0080048588.01.T01 | MTR_8g015770 | 59.592 | 490 | 157 | 8 | 1 | 460 | 73 | 551 | 3.41e-180 | 515 |
| MsG0080048588.01.T01 | MTR_8g015680 | 59.509 | 489 | 156 | 6 | 4 | 460 | 67 | 545 | 1.09e-174 | 501 |
| MsG0080048588.01.T01 | MTR_8g018340 | 57.411 | 479 | 153 | 7 | 1 | 447 | 73 | 532 | 4.79e-169 | 488 |
| MsG0080048588.01.T01 | MTR_7g016460 | 56.017 | 482 | 171 | 10 | 1 | 460 | 7 | 469 | 3.86e-159 | 459 |
| MsG0080048588.01.T01 | MTR_7g025080 | 78.358 | 268 | 34 | 3 | 216 | 460 | 83 | 349 | 1.01e-127 | 374 |
| MsG0080048588.01.T01 | MTR_6g006730 | 49.788 | 472 | 210 | 10 | 1 | 460 | 63 | 519 | 1.26e-127 | 380 |
| MsG0080048588.01.T01 | MTR_8g015670 | 52.874 | 435 | 128 | 9 | 39 | 460 | 4 | 374 | 1.03e-125 | 370 |
| MsG0080048588.01.T01 | MTR_6g006740 | 50.741 | 270 | 121 | 4 | 5 | 271 | 78 | 338 | 4.98e-68 | 221 |
| MsG0080048588.01.T01 | MTR_8g015720 | 36.646 | 322 | 82 | 10 | 183 | 460 | 20 | 263 | 3.78e-36 | 134 |
| MsG0080048588.01.T01 | MTR_6g006760 | 47.706 | 109 | 39 | 3 | 353 | 443 | 124 | 232 | 8.36e-19 | 85.9 |
| MsG0080048588.01.T01 | MTR_2g100590 | 26.994 | 326 | 209 | 10 | 11 | 333 | 108 | 407 | 7.98e-16 | 79.7 |
| MsG0080048588.01.T01 | MTR_2g100590 | 26.994 | 326 | 209 | 10 | 11 | 333 | 108 | 407 | 9.79e-16 | 79.3 |
| MsG0080048588.01.T01 | MTR_2g100590 | 26.994 | 326 | 209 | 10 | 11 | 333 | 108 | 407 | 1.67e-15 | 79.3 |
| MsG0080048588.01.T01 | MTR_6g006750 | 40.367 | 109 | 33 | 4 | 379 | 460 | 10 | 113 | 1.16e-13 | 67.8 |
| MsG0080048588.01.T01 | MTR_8g008643 | 46.753 | 77 | 24 | 1 | 371 | 447 | 28 | 87 | 1.22e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 83 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATCTACATTGATTATT+TGG | 0.126828 | contig360end:+31894 | MsG0080048588.01.T01:CDS |
| GTCATTGTGGATTGTTCTTT+TGG | 0.250388 | contig360end:+31309 | MsG0080048588.01.T01:CDS |
| CTTAAGGTGTTGGAGTTATC+TGG | 0.271166 | contig360end:+31742 | MsG0080048588.01.T01:CDS |
| TACATTGATTATTTGGATCT+TGG | 0.279262 | contig360end:+31901 | MsG0080048588.01.T01:CDS |
| ATATTATTGTCATGATGTTT+TGG | 0.286935 | contig360end:+31534 | MsG0080048588.01.T01:CDS |
| TGTCAAAGCATGTTTATCTT+TGG | 0.291855 | contig360end:+31074 | MsG0080048588.01.T01:CDS |
| TGTTGACCTCTTTCATGTTA+TGG | 0.292423 | contig360end:-31768 | MsG0080048588.01.T01:intergenic |
| AGGGTTACACTTGTTCTATT+TGG | 0.306621 | contig360end:+31600 | MsG0080048588.01.T01:CDS |
| CTTCTTACAAAAGAAATAAT+AGG | 0.308664 | contig360end:-31847 | MsG0080048588.01.T01:intergenic |
| ATATCATGAGCTGAAGAAAT+TGG | 0.315048 | contig360end:-32677 | MsG0080048588.01.T01:intergenic |
| CTATCAAAATGAATCTTATA+TGG | 0.325709 | contig360end:-31562 | MsG0080048588.01.T01:intergenic |
| TATTCACATGACAATAGATT+TGG | 0.337789 | contig360end:-31799 | MsG0080048588.01.T01:intergenic |
| TGGAACTGTTTGACAGAAAT+CGG | 0.340681 | contig360end:+30431 | MsG0080048588.01.T01:five_prime_UTR |
| TATTTCAAGTGTTCAACTTA+AGG | 0.351854 | contig360end:+31726 | MsG0080048588.01.T01:CDS |
| CTCAAGACAGTTGATGTTGA+TGG | 0.379137 | contig360end:+31469 | MsG0080048588.01.T01:CDS |
| TTTAAAATCATTCATTGATA+GGG | 0.388324 | contig360end:-30936 | MsG0080048588.01.T01:intergenic |
| TCAGAGTTGATCAAGCATTC+AGG | 0.390699 | contig360end:+31251 | MsG0080048588.01.T01:CDS |
| ACATCAACTGTCTTGAGCTT+TGG | 0.405224 | contig360end:-31463 | MsG0080048588.01.T01:intergenic |
| TTTGGATCTTGGTAACTTGA+AGG | 0.426673 | contig360end:+31912 | MsG0080048588.01.T01:CDS |
| AAAACTGTGATTGAATGAAT+AGG | 0.430225 | contig360end:+30461 | MsG0080048588.01.T01:five_prime_UTR |
| CGAAAGCTTGGGCAGATACA+TGG | 0.432901 | contig360end:+30861 | MsG0080048588.01.T01:five_prime_UTR |
| GTCCTAGCAGCATCTTTCTC+TGG | 0.450082 | contig360end:-30827 | MsG0080048588.01.T01:intergenic |
| ACTTACCAAGTTGGTGTTGA+AGG | 0.452538 | contig360end:+31222 | MsG0080048588.01.T01:CDS |
| CTGATAATAAATTCACGGGT+TGG | 0.456032 | contig360end:+30909 | MsG0080048588.01.T01:five_prime_UTR |
| GATAGTTGCAGAAATTTGAA+AGG | 0.472029 | contig360end:+31580 | MsG0080048588.01.T01:CDS |
| AAGTGTTCAACTTAAGGTGT+TGG | 0.488013 | contig360end:+31732 | MsG0080048588.01.T01:CDS |
| ATGACCTTCCTCAATGTAGT+TGG | 0.492271 | contig360end:-31155 | MsG0080048588.01.T01:intergenic |
| TGTTTATCTTTGGTTGAAGT+CGG | 0.494118 | contig360end:+31084 | MsG0080048588.01.T01:CDS |
| CCAAGTTGGTGTTGAAGGGG+GGG | 0.498131 | contig360end:+31227 | MsG0080048588.01.T01:CDS |
| ATTTCAATCTCTCAAGGAAA+GGG | 0.498601 | contig360end:-31672 | MsG0080048588.01.T01:intergenic |
| TGACAAATTTCAATCTCTCA+AGG | 0.499167 | contig360end:-31678 | MsG0080048588.01.T01:intergenic |
| GTGTTGGTGGCATGGCTTGA+AGG | 0.502128 | contig360end:+32586 | MsG0080048588.01.T01:CDS |
| CTTACCAAGTTGGTGTTGAA+GGG | 0.507173 | contig360end:+31223 | MsG0080048588.01.T01:CDS |
| ATAGTTGCAGAAATTTGAAA+GGG | 0.510548 | contig360end:+31581 | MsG0080048588.01.T01:CDS |
| AAAGTTATATGTTCAATGAA+AGG | 0.513901 | contig360end:-31370 | MsG0080048588.01.T01:intergenic |
| TGCAAGTGTTTGACGCTTGG+TGG | 0.514127 | contig360end:-32131 | MsG0080048588.01.T01:intergenic |
| TTAAAATCATTCATTGATAG+GGG | 0.515356 | contig360end:-30935 | MsG0080048588.01.T01:intergenic |
| TTACACTTGTTCTATTTGGA+AGG | 0.517715 | contig360end:+31604 | MsG0080048588.01.T01:CDS |
| AGCAAAATCACTTACCAAGT+TGG | 0.527042 | contig360end:+31213 | MsG0080048588.01.T01:CDS |
| TAATATAGATACTCAAGACT+TGG | 0.530379 | contig360end:-31517 | None:intergenic |
| GAGATTCACACTGAGGGAGA+AGG | 0.531032 | contig360end:+30401 | None:intergenic |
| GAATTCTCTGCTGCAAAACA+AGG | 0.532779 | contig360end:-32233 | MsG0080048588.01.T01:intergenic |
| CATTGAGAGTATTGTCATTG+TGG | 0.534272 | contig360end:+31296 | MsG0080048588.01.T01:CDS |
| AGATGCAAGTGTTTGACGCT+TGG | 0.536827 | contig360end:-32134 | MsG0080048588.01.T01:intergenic |
| GTAATACTATCACAGACAAA+TGG | 0.539863 | contig360end:+31626 | MsG0080048588.01.T01:CDS |
| ACCAAGTTGGTGTTGAAGGG+GGG | 0.542246 | contig360end:+31226 | MsG0080048588.01.T01:CDS |
| TTTCACTACAGAAATGAAGT+AGG | 0.543627 | contig360end:+30748 | MsG0080048588.01.T01:intron |
| AGTGTTTGACGCTTGGTGGA+GGG | 0.551141 | contig360end:-32127 | MsG0080048588.01.T01:intergenic |
| CAAGCCATGCCACCAACACT+TGG | 0.553732 | contig360end:-32582 | MsG0080048588.01.T01:intergenic |
| AAGTGTTTGACGCTTGGTGG+AGG | 0.558456 | contig360end:-32128 | MsG0080048588.01.T01:intergenic |
| CTAGAGCTTTGTTTGCCATG+TGG | 0.563699 | contig360end:+31130 | MsG0080048588.01.T01:CDS |
| AATTTCAATCTCTCAAGGAA+AGG | 0.567927 | contig360end:-31673 | MsG0080048588.01.T01:intergenic |
| GATACCAAGTGTTGGTGGCA+TGG | 0.576429 | contig360end:+32578 | MsG0080048588.01.T01:CDS |
| GGGATTGAGATTCACACTGA+GGG | 0.577170 | contig360end:+30395 | None:intergenic |
| CTACTGATACCAAGTGTTGG+TGG | 0.579731 | contig360end:+32573 | MsG0080048588.01.T01:CDS |
| GGAACTGTTTGACAGAAATC+GGG | 0.581299 | contig360end:+30432 | MsG0080048588.01.T01:five_prime_UTR |
| GATGAAACTTGAAATACCGC+AGG | 0.581702 | contig360end:-32104 | None:intergenic |
| AGATTCACACTGAGGGAGAA+GGG | 0.582660 | contig360end:+30402 | None:intergenic |
| TTACCAAGTTGGTGTTGAAG+GGG | 0.582704 | contig360end:+31224 | MsG0080048588.01.T01:CDS |
| AATATAGATACTCAAGACTT+GGG | 0.587007 | contig360end:-31516 | MsG0080048588.01.T01:intergenic |
| GTGTTTGACGCTTGGTGGAG+GGG | 0.588444 | contig360end:-32126 | MsG0080048588.01.T01:intergenic |
| TGATGTTGATGGAATACAAG+AGG | 0.588977 | contig360end:+31480 | MsG0080048588.01.T01:CDS |
| AATTGGCAACGATTCTAACA+AGG | 0.591440 | contig360end:-32660 | MsG0080048588.01.T01:intergenic |
| CTTTGGTTGAAGTCGGCAAG+TGG | 0.594306 | contig360end:+31091 | MsG0080048588.01.T01:CDS |
| TACCAAGTTGGTGTTGAAGG+GGG | 0.596188 | contig360end:+31225 | MsG0080048588.01.T01:CDS |
| TGGTTGCCATAACATGAAAG+AGG | 0.598070 | contig360end:+31762 | MsG0080048588.01.T01:CDS |
| CACTACAGAAATGAAGTAGG+AGG | 0.616849 | contig360end:+30751 | MsG0080048588.01.T01:intron |
| AACTACATTGAGGAAGGTCA+TGG | 0.618471 | contig360end:+31157 | MsG0080048588.01.T01:CDS |
| ATGAAGTGTTTGAGCATGCA+TGG | 0.620142 | contig360end:+31436 | MsG0080048588.01.T01:CDS |
| TCACACTGAGGGAGAAGGGT+CGG | 0.620554 | contig360end:+30406 | None:intergenic |
| TTTGCTTCGATTACACCTGT+CGG | 0.620828 | contig360end:-31196 | MsG0080048588.01.T01:intergenic |
| TGCCAGAGAAAGATGCTGCT+AGG | 0.622523 | contig360end:+30825 | MsG0080048588.01.T01:five_prime_UTR |
| CTGAGGGAGAAGGGTCGGTG+TGG | 0.635806 | contig360end:+30411 | MsG0080048588.01.T01:five_prime_UTR |
| GCTCTACTGATACCAAGTGT+TGG | 0.637899 | contig360end:+32570 | MsG0080048588.01.T01:intron |
| ATGTGACGAGAACATTGTCG+AGG | 0.640187 | contig360end:+30984 | MsG0080048588.01.T01:CDS |
| ATGTGGTTCCAACTACATTG+AGG | 0.647846 | contig360end:+31147 | MsG0080048588.01.T01:CDS |
| GGTTCCAACTACATTGAGGA+AGG | 0.659502 | contig360end:+31151 | MsG0080048588.01.T01:CDS |
| ATTCATCTTTGAGCTAACTG+AGG | 0.668486 | contig360end:+31984 | MsG0080048588.01.T01:CDS |
| AGGGATTGAGATTCACACTG+AGG | 0.679655 | contig360end:+30394 | None:intergenic |
| TCAATGTAGTTGGAACCACA+TGG | 0.687885 | contig360end:-31145 | MsG0080048588.01.T01:intergenic |
| ATGAAACTTGAAATACCGCA+GGG | 0.694737 | contig360end:-32103 | MsG0080048588.01.T01:intergenic |
| GTAGGATGAATTCAACCCTG+CGG | 0.769483 | contig360end:+32088 | MsG0080048588.01.T01:intron |
| TTGCAGCAGAGAATTCATCG+AGG | 0.795349 | contig360end:+32240 | MsG0080048588.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTCTTTCATAACAT+AGG | + | contig360end:32304-32323 | MsG0080048588.01.T01:intron | 15.0% |
| !! | TAAAATTCTTTCATAACATA+GGG | + | contig360end:32305-32324 | MsG0080048588.01.T01:intron | 15.0% |
| !! | TCGATTTCTTAAATTATTAT+CGG | + | contig360end:30659-30678 | MsG0080048588.01.T01:intron | 15.0% |
| !! | TTATCAGAAAAAGATAATAT+AGG | - | contig360end:30896-30915 | MsG0080048588.01.T01:intergenic | 15.0% |
| !!! | TTTAAAATCATTCATTGATA+GGG | - | contig360end:30939-30958 | MsG0080048588.01.T01:intergenic | 15.0% |
| !!! | TTTTAAAATCATTCATTGAT+AGG | - | contig360end:30940-30959 | MsG0080048588.01.T01:intergenic | 15.0% |
| !!! | TTTTTCTGATAATAAATTCA+CGG | + | contig360end:30904-30923 | MsG0080048588.01.T01:five_prime_UTR | 15.0% |
| !! | AAAGTTATATGTTCAATGAA+AGG | - | contig360end:31373-31392 | MsG0080048588.01.T01:intergenic | 20.0% |
| !! | AATAATTTAAGAAATCGAAG+TGG | - | contig360end:30657-30676 | MsG0080048588.01.T01:intergenic | 20.0% |
| !! | CTATCAAAATGAATCTTATA+TGG | - | contig360end:31565-31584 | MsG0080048588.01.T01:intergenic | 20.0% |
| !! | CTTCTTACAAAAGAAATAAT+AGG | - | contig360end:31850-31869 | MsG0080048588.01.T01:intergenic | 20.0% |
| !! | TTAAAATCATTCATTGATAG+GGG | - | contig360end:30938-30957 | MsG0080048588.01.T01:intergenic | 20.0% |
| !!! | ATATTATTGTCATGATGTTT+TGG | + | contig360end:31534-31553 | MsG0080048588.01.T01:CDS | 20.0% |
| !!! | ATTTTGACAAAAGGAAATAA+CGG | - | contig360end:32345-32364 | MsG0080048588.01.T01:intergenic | 20.0% |
| !!! | GTTGTTGTTTTTATACTTTT+TGG | + | contig360end:32437-32456 | MsG0080048588.01.T01:intron | 20.0% |
| !!! | TCAAATCTACATTGATTATT+TGG | + | contig360end:31894-31913 | MsG0080048588.01.T01:CDS | 20.0% |
| !!! | TTTTCTGATAATAAATTCAC+GGG | + | contig360end:30905-30924 | MsG0080048588.01.T01:five_prime_UTR | 20.0% |
| ! | AAAACTGTGATTGAATGAAT+AGG | + | contig360end:30461-30480 | MsG0080048588.01.T01:five_prime_UTR | 25.0% |
| ! | AATATAGATACTCAAGACTT+GGG | - | contig360end:31519-31538 | MsG0080048588.01.T01:intergenic | 25.0% |
| ! | ATAGTTGCAGAAATTTGAAA+GGG | + | contig360end:31581-31600 | MsG0080048588.01.T01:CDS | 25.0% |
| ! | ATGTAACTAACTACATGTTT+AGG | - | contig360end:30630-30649 | MsG0080048588.01.T01:intergenic | 25.0% |
| ! | TAATATAGATACTCAAGACT+TGG | - | contig360end:31520-31539 | MsG0080048588.01.T01:intergenic | 25.0% |
| ! | TATTCACATGACAATAGATT+TGG | - | contig360end:31802-31821 | MsG0080048588.01.T01:intergenic | 25.0% |
| ! | TTATTGACAACTTGAAATCA+AGG | - | contig360end:32288-32307 | MsG0080048588.01.T01:intergenic | 25.0% |
| ! | TTCATAACATAGGGAAAAAA+AGG | + | contig360end:32314-32333 | MsG0080048588.01.T01:intron | 25.0% |
| !! | ATGTGATGAAGAATGATTTT+CGG | - | contig360end:30794-30813 | MsG0080048588.01.T01:intergenic | 25.0% |
| !! | TACATTGATTATTTGGATCT+TGG | + | contig360end:31901-31920 | MsG0080048588.01.T01:CDS | 25.0% |
| !! | TATTTCAAGTGTTCAACTTA+AGG | + | contig360end:31726-31745 | MsG0080048588.01.T01:CDS | 25.0% |
| AATTTCAATCTCTCAAGGAA+AGG | - | contig360end:31676-31695 | MsG0080048588.01.T01:intergenic | 30.0% | |
| ACTTGAAATCAAGGAAACAT+AGG | - | contig360end:32279-32298 | MsG0080048588.01.T01:intergenic | 30.0% | |
| ATATCATGAGCTGAAGAAAT+TGG | - | contig360end:32680-32699 | MsG0080048588.01.T01:intergenic | 30.0% | |
| ATTTCAATCTCTCAAGGAAA+GGG | - | contig360end:31675-31694 | MsG0080048588.01.T01:intergenic | 30.0% | |
| GATAGTTGCAGAAATTTGAA+AGG | + | contig360end:31580-31599 | MsG0080048588.01.T01:CDS | 30.0% | |
| GGTCAACATAAAATGTTATG+TGG | + | contig360end:32458-32477 | MsG0080048588.01.T01:intron | 30.0% | |
| GTAATACTATCACAGACAAA+TGG | + | contig360end:31626-31645 | MsG0080048588.01.T01:CDS | 30.0% | |
| GTTTAGGTGTCAAATCTAAA+GGG | - | contig360end:30614-30633 | MsG0080048588.01.T01:intergenic | 30.0% | |
| TAATCATAAATGTGCAGCAA+AGG | - | contig360end:30706-30725 | MsG0080048588.01.T01:intergenic | 30.0% | |
| TGACAAATTTCAATCTCTCA+AGG | - | contig360end:31681-31700 | MsG0080048588.01.T01:intergenic | 30.0% | |
| TGTCAAAGCATGTTTATCTT+TGG | + | contig360end:31074-31093 | MsG0080048588.01.T01:CDS | 30.0% | |
| TGTTTAGGTGTCAAATCTAA+AGG | - | contig360end:30615-30634 | MsG0080048588.01.T01:intergenic | 30.0% | |
| TGTTTATCTTTGGTTGAAGT+CGG | + | contig360end:31084-31103 | MsG0080048588.01.T01:CDS | 30.0% | |
| TTACACTTGTTCTATTTGGA+AGG | + | contig360end:31604-31623 | MsG0080048588.01.T01:CDS | 30.0% | |
| TTTCACTACAGAAATGAAGT+AGG | + | contig360end:30748-30767 | MsG0080048588.01.T01:intron | 30.0% | |
| ! | AGTGATGTCAAAACATTTTC+AGG | - | contig360end:31958-31977 | MsG0080048588.01.T01:intergenic | 30.0% |
| ! | TTCTTCATCACATTTTGTCA+AGG | + | contig360end:30801-30820 | MsG0080048588.01.T01:five_prime_UTR | 30.0% |
| !! | CATGCAATGATTTTGACAAA+AGG | - | contig360end:32354-32373 | MsG0080048588.01.T01:intergenic | 30.0% |
| !! | TATTTTTATCCCCACTTAGT+GGG | + | contig360end:32398-32417 | MsG0080048588.01.T01:intron | 30.0% |
| !!! | CATTTTCAGGTTTGATGTTT+TGG | - | contig360end:31945-31964 | MsG0080048588.01.T01:intergenic | 30.0% |
| AAGTGTTCAACTTAAGGTGT+TGG | + | contig360end:31732-31751 | MsG0080048588.01.T01:CDS | 35.0% | |
| AATTGGCAACGATTCTAACA+AGG | - | contig360end:32663-32682 | MsG0080048588.01.T01:intergenic | 35.0% | |
| AGCAAAATCACTTACCAAGT+TGG | + | contig360end:31213-31232 | MsG0080048588.01.T01:CDS | 35.0% | |
| AGGGTTACACTTGTTCTATT+TGG | + | contig360end:31600-31619 | MsG0080048588.01.T01:CDS | 35.0% | |
| ATGAAACTTGAAATACCGCA+GGG | - | contig360end:32106-32125 | MsG0080048588.01.T01:intergenic | 35.0% | |
| ATTCATCTTTGAGCTAACTG+AGG | + | contig360end:31984-32003 | MsG0080048588.01.T01:CDS | 35.0% | |
| CTGATAATAAATTCACGGGT+TGG | + | contig360end:30909-30928 | MsG0080048588.01.T01:five_prime_UTR | 35.0% | |
| TCGTAGAAAAACTGTAGGTT+TGG | - | contig360end:32515-32534 | MsG0080048588.01.T01:intergenic | 35.0% | |
| TGGAACTGTTTGACAGAAAT+CGG | + | contig360end:30431-30450 | MsG0080048588.01.T01:five_prime_UTR | 35.0% | |
| TGTTGACCTCTTTCATGTTA+TGG | - | contig360end:31771-31790 | MsG0080048588.01.T01:intergenic | 35.0% | |
| ! | AAATGCTATGTTTTACCGAC+AGG | + | contig360end:31181-31200 | MsG0080048588.01.T01:CDS | 35.0% |
| ! | AAGTGTTTTGTCGAAAGCTT+GGG | + | contig360end:30850-30869 | MsG0080048588.01.T01:five_prime_UTR | 35.0% |
| ! | GAGTATCGTAGAAAAACTGT+AGG | - | contig360end:32520-32539 | MsG0080048588.01.T01:intergenic | 35.0% |
| ! | TGATGTTGATGGAATACAAG+AGG | + | contig360end:31480-31499 | MsG0080048588.01.T01:CDS | 35.0% |
| ! | TTTGGATCTTGGTAACTTGA+AGG | + | contig360end:31912-31931 | MsG0080048588.01.T01:CDS | 35.0% |
| ! | TTTTCGGTAGAATCGACAAT+CGG | - | contig360end:30778-30797 | MsG0080048588.01.T01:intergenic | 35.0% |
| !! | CATTGAGAGTATTGTCATTG+TGG | + | contig360end:31296-31315 | MsG0080048588.01.T01:CDS | 35.0% |
| !! | GTATTTTTATCCCCACTTAG+TGG | + | contig360end:32397-32416 | MsG0080048588.01.T01:intron | 35.0% |
| !! | GTCATTGTGGATTGTTCTTT+TGG | + | contig360end:31309-31328 | MsG0080048588.01.T01:CDS | 35.0% |
| AACTACATTGAGGAAGGTCA+TGG | + | contig360end:31157-31176 | MsG0080048588.01.T01:CDS | 40.0% | |
| ACATCAACTGTCTTGAGCTT+TGG | - | contig360end:31466-31485 | MsG0080048588.01.T01:intergenic | 40.0% | |
| ATGACCTTCCTCAATGTAGT+TGG | - | contig360end:31158-31177 | MsG0080048588.01.T01:intergenic | 40.0% | |
| ATGTGGTTCCAACTACATTG+AGG | + | contig360end:31147-31166 | MsG0080048588.01.T01:CDS | 40.0% | |
| CACTACAGAAATGAAGTAGG+AGG | + | contig360end:30751-30770 | MsG0080048588.01.T01:intron | 40.0% | |
| GAATTCTCTGCTGCAAAACA+AGG | - | contig360end:32236-32255 | MsG0080048588.01.T01:intergenic | 40.0% | |
| GATGAAACTTGAAATACCGC+AGG | - | contig360end:32107-32126 | MsG0080048588.01.T01:intergenic | 40.0% | |
| GGAACTGTTTGACAGAAATC+GGG | + | contig360end:30432-30451 | MsG0080048588.01.T01:five_prime_UTR | 40.0% | |
| GTACTTACGCTGTATTGTGT+AGG | + | contig360end:32070-32089 | MsG0080048588.01.T01:intron | 40.0% | |
| TCAATGTAGTTGGAACCACA+TGG | - | contig360end:31148-31167 | MsG0080048588.01.T01:intergenic | 40.0% | |
| TGGTTGCCATAACATGAAAG+AGG | + | contig360end:31762-31781 | MsG0080048588.01.T01:CDS | 40.0% | |
| TTTGCTTCGATTACACCTGT+CGG | - | contig360end:31199-31218 | MsG0080048588.01.T01:intergenic | 40.0% | |
| ! | AAGTCTTATCCCACTAAGTG+GGG | - | contig360end:32410-32429 | MsG0080048588.01.T01:intergenic | 40.0% |
| ! | ATGAAGTGTTTGAGCATGCA+TGG | + | contig360end:31436-31455 | MsG0080048588.01.T01:CDS | 40.0% |
| ! | CAAGTCTTATCCCACTAAGT+GGG | - | contig360end:32411-32430 | MsG0080048588.01.T01:intergenic | 40.0% |
| ! | CAAGTGTTTTGTCGAAAGCT+TGG | + | contig360end:30849-30868 | MsG0080048588.01.T01:five_prime_UTR | 40.0% |
| ! | CTCAAGACAGTTGATGTTGA+TGG | + | contig360end:31469-31488 | MsG0080048588.01.T01:CDS | 40.0% |
| ! | TCAGAGTTGATCAAGCATTC+AGG | + | contig360end:31251-31270 | MsG0080048588.01.T01:CDS | 40.0% |
| !! | ACTTACCAAGTTGGTGTTGA+AGG | + | contig360end:31222-31241 | MsG0080048588.01.T01:CDS | 40.0% |
| !! | CTTAAGGTGTTGGAGTTATC+TGG | + | contig360end:31742-31761 | MsG0080048588.01.T01:CDS | 40.0% |
| !! | CTTACCAAGTTGGTGTTGAA+GGG | + | contig360end:31223-31242 | MsG0080048588.01.T01:CDS | 40.0% |
| !! | GAGGTTTTGTGATCAAGGAT+TGG | + | contig360end:31003-31022 | MsG0080048588.01.T01:CDS | 40.0% |
| !! | TTACCAAGTTGGTGTTGAAG+GGG | + | contig360end:31224-31243 | MsG0080048588.01.T01:CDS | 40.0% |
| !! | TTGTCGAGGTTTTGTGATCA+AGG | + | contig360end:30998-31017 | MsG0080048588.01.T01:CDS | 40.0% |
| AGATGCAAGTGTTTGACGCT+TGG | - | contig360end:32137-32156 | MsG0080048588.01.T01:intergenic | 45.0% | |
| ATGTGACGAGAACATTGTCG+AGG | + | contig360end:30984-31003 | MsG0080048588.01.T01:CDS | 45.0% | |
| CCACTTAGTGGGATAAGACT+TGG | + | contig360end:32409-32428 | MsG0080048588.01.T01:intron | 45.0% | |
| GCTCTACTGATACCAAGTGT+TGG | + | contig360end:32570-32589 | MsG0080048588.01.T01:intron | 45.0% | |
| GGTTCCAACTACATTGAGGA+AGG | + | contig360end:31151-31170 | MsG0080048588.01.T01:CDS | 45.0% | |
| GTAGGATGAATTCAACCCTG+CGG | + | contig360end:32088-32107 | MsG0080048588.01.T01:intron | 45.0% | |
| TTGCAGCAGAGAATTCATCG+AGG | + | contig360end:32240-32259 | MsG0080048588.01.T01:CDS | 45.0% | |
| ! | CCAAGTCTTATCCCACTAAG+TGG | - | contig360end:32412-32431 | MsG0080048588.01.T01:intergenic | 45.0% |
| !! | CTACTGATACCAAGTGTTGG+TGG | + | contig360end:32573-32592 | MsG0080048588.01.T01:CDS | 45.0% |
| !! | CTAGAGCTTTGTTTGCCATG+TGG | + | contig360end:31130-31149 | MsG0080048588.01.T01:CDS | 45.0% |
| !! | TACCAAGTTGGTGTTGAAGG+GGG | + | contig360end:31225-31244 | MsG0080048588.01.T01:CDS | 45.0% |
| CGAAAGCTTGGGCAGATACA+TGG | + | contig360end:30861-30880 | MsG0080048588.01.T01:five_prime_UTR | 50.0% | |
| CTTTGGTTGAAGTCGGCAAG+TGG | + | contig360end:31091-31110 | MsG0080048588.01.T01:CDS | 50.0% | |
| GTCCTAGCAGCATCTTTCTC+TGG | - | contig360end:30830-30849 | MsG0080048588.01.T01:intergenic | 50.0% | |
| TGCAAGTGTTTGACGCTTGG+TGG | - | contig360end:32134-32153 | MsG0080048588.01.T01:intergenic | 50.0% | |
| TGCCAGAGAAAGATGCTGCT+AGG | + | contig360end:30825-30844 | MsG0080048588.01.T01:five_prime_UTR | 50.0% | |
| ! | AAGTGTTTGACGCTTGGTGG+AGG | - | contig360end:32131-32150 | MsG0080048588.01.T01:intergenic | 50.0% |
| ! | AGTGTTTGACGCTTGGTGGA+GGG | - | contig360end:32130-32149 | MsG0080048588.01.T01:intergenic | 50.0% |
| !! | ACCAAGTTGGTGTTGAAGGG+GGG | + | contig360end:31226-31245 | MsG0080048588.01.T01:CDS | 50.0% |
| !! | GATACCAAGTGTTGGTGGCA+TGG | + | contig360end:32578-32597 | MsG0080048588.01.T01:CDS | 50.0% |
| !!! | CGTTGTTCAGTTTTGAGCCC+GGG | + | contig360end:31397-31416 | MsG0080048588.01.T01:CDS | 50.0% |
| !!! | GCGTTGTTCAGTTTTGAGCC+CGG | + | contig360end:31396-31415 | MsG0080048588.01.T01:CDS | 50.0% |
| CAAGCCATGCCACCAACACT+TGG | - | contig360end:32585-32604 | MsG0080048588.01.T01:intergenic | 55.0% | |
| ! | ATGAGTTTTACGCCGCCTCC+CGG | - | contig360end:31418-31437 | MsG0080048588.01.T01:intergenic | 55.0% |
| ! | GTGTTTGACGCTTGGTGGAG+GGG | - | contig360end:32129-32148 | MsG0080048588.01.T01:intergenic | 55.0% |
| !! | CCAAGTTGGTGTTGAAGGGG+GGG | + | contig360end:31227-31246 | MsG0080048588.01.T01:CDS | 55.0% |
| !! | GTGTTGGTGGCATGGCTTGA+AGG | + | contig360end:32586-32605 | MsG0080048588.01.T01:CDS | 55.0% |
| !!! | TGTTCAGTTTTGAGCCCGGG+AGG | + | contig360end:31400-31419 | MsG0080048588.01.T01:CDS | 55.0% |
| CCCCCCCTTCAACACCAACT+TGG | - | contig360end:31230-31249 | MsG0080048588.01.T01:intergenic | 60.0% | |
| ! | TGAGTTTTACGCCGCCTCCC+GGG | - | contig360end:31417-31436 | MsG0080048588.01.T01:intergenic | 60.0% |
| !!! | TCAGTTTTGAGCCCGGGAGG+CGG | + | contig360end:31403-31422 | MsG0080048588.01.T01:CDS | 60.0% |
| CTGAGGGAGAAGGGTCGGTG+TGG | + | contig360end:30411-30430 | MsG0080048588.01.T01:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig360end | gene | 30408 | 32721 | 30408 | ID=MsG0080048588.01;Name=MsG0080048588.01 |
| contig360end | mRNA | 30408 | 32721 | 30408 | ID=MsG0080048588.01.T01;Parent=MsG0080048588.01;Name=MsG0080048588.01.T01;_AED=0.23;_eAED=0.24;_QI=277|0.66|0.75|1|0.66|0.5|4|0|460 |
| contig360end | exon | 32571 | 32721 | 32571 | ID=MsG0080048588.01.T01:exon:3569;Parent=MsG0080048588.01.T01 |
| contig360end | exon | 32092 | 32261 | 32092 | ID=MsG0080048588.01.T01:exon:3568;Parent=MsG0080048588.01.T01 |
| contig360end | exon | 30759 | 32005 | 30759 | ID=MsG0080048588.01.T01:exon:3567;Parent=MsG0080048588.01.T01 |
| contig360end | exon | 30408 | 30499 | 30408 | ID=MsG0080048588.01.T01:exon:3566;Parent=MsG0080048588.01.T01 |
| contig360end | five_prime_UTR | 30408 | 30499 | 30408 | ID=MsG0080048588.01.T01:five_prime_utr;Parent=MsG0080048588.01.T01 |
| contig360end | five_prime_UTR | 30759 | 30943 | 30759 | ID=MsG0080048588.01.T01:five_prime_utr;Parent=MsG0080048588.01.T01 |
| contig360end | CDS | 30944 | 32005 | 30944 | ID=MsG0080048588.01.T01:cds;Parent=MsG0080048588.01.T01 |
| contig360end | CDS | 32092 | 32261 | 32092 | ID=MsG0080048588.01.T01:cds;Parent=MsG0080048588.01.T01 |
| contig360end | CDS | 32571 | 32721 | 32571 | ID=MsG0080048588.01.T01:cds;Parent=MsG0080048588.01.T01 |
| Gene Sequence |
| Protein sequence |
