AlfalfaGEDB | MsG0780037513.01

M. sativa cultivar ZhongmuNo.1 / MsG0780037513.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037513.01.T01	XP_017252664.1	60.235	425	159	5	21	437	20	442	0	522

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037513.01.T01	A0A392LYG7	65.217	161	47	4	1	158	1	155	2.10e-47	170

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180004806.01	MsG0780037513.01	0.800484	1.410558e-48	6.575541e-46
MsG0280006420.01	MsG0780037513.01	0.806618	7.536383e-50	4.109259e-47
MsG0480018919.01	MsG0780037513.01	0.802578	5.249238e-49	2.580465e-46
MsG0480022971.01	MsG0780037513.01	0.813467	2.522627e-51	1.648752e-48
MsG0580024035.01	MsG0780037513.01	0.814014	1.911291e-51	1.267809e-48
MsG0780037513.01	MsG0780040896.01	0.821937	3.095409e-53	2.554021e-50
MsG0780037513.01	MsG0880041883.01	0.803798	2.935047e-49	1.488655e-46
MsG0780037513.01	MsG0880045118.01	0.826613	2.464712e-54	2.322931e-51

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 78 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTTATAAAACTTTCT+TGG	0.259317	7:+27292146	None:intergenic
AAAGCATCTTCTAATGAAGA+TGG	0.470016	7:-27291425	MsG0780037513.01.T01:CDS
AAAGCTACTTGTGTAATTAA+AGG	0.240382	7:+27291812	None:intergenic
AAAGGAACTTCTTCTACAAA+TGG	0.433292	7:-27291673	MsG0780037513.01.T01:CDS
AACCACGCATGTTTATTCTT+AGG	0.251065	7:+27291971	None:intergenic
AACCTACATTAGAAGATGTA+TGG	0.401501	7:-27291334	MsG0780037513.01.T01:CDS
AACTTTCTTGGTTATTATTT+TGG	0.102182	7:+27292158	None:intergenic
AAGAAGTTCCTTTGTAATAC+AGG	0.350718	7:+27291683	None:intergenic
AAGCTACTTGTGTAATTAAA+GGG	0.351362	7:+27291813	None:intergenic
AATATATTTACTTCAATTAT+TGG	0.153149	7:-27292036	MsG0780037513.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGAACTTCTTCTACAAA+TGG	-	Chr7:27292229-27292248	MsG0780037513.01.T01:CDS	30.0%
AACCTACATTAGAAGATGTA+TGG	-	Chr7:27292568-27292587	MsG0780037513.01.T01:CDS	30.0%
AAGAAGTTCCTTTGTAATAC+AGG	+	Chr7:27292222-27292241	None:intergenic	30.0%
AAGGCTATAAAAATTGCTGA+AGG	-	Chr7:27291841-27291860	MsG0780037513.01.T01:CDS	30.0%
ACAACTGTGCAAAATAATAG+AGG	-	Chr7:27291418-27291437	MsG0780037513.01.T01:CDS	30.0%
ACCTACATTAGAAGATGTAT+GGG	-	Chr7:27292569-27292588	MsG0780037513.01.T01:CDS	30.0%
AGATCTTGTTACCAAAAGAA+TGG	-	Chr7:27291797-27291816	MsG0780037513.01.T01:CDS	30.0%
ATCTCCAAAACCAAAGAATT+TGG	+	Chr7:27292164-27292183	None:intergenic	30.0%
ATCTTGTTACCAAAAGAATG+GGG	-	Chr7:27291799-27291818	MsG0780037513.01.T01:CDS	30.0%
ATTTGATCTTCAGTTTCTTG+AGG	+	Chr7:27292402-27292421	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	27291304	27292620	27291304	ID=MsG0780037513.01;Name=MsG0780037513.01
Chr7	mRNA	27291304	27292620	27291304	ID=MsG0780037513.01.T01;Parent=MsG0780037513.01;Name=MsG0780037513.01.T01;_AED=0.18;_eAED=0.18;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|438
Chr7	exon	27291304	27292620	27291304	ID=MsG0780037513.01.T01:exon:12687;Parent=MsG0780037513.01.T01
Chr7	CDS	27291304	27292620	27291304	ID=MsG0780037513.01.T01:cds;Parent=MsG0780037513.01.T01

Gene Sequence

>MsG0780037513.01.T01

ATGACAACCCCTTATAGGGGCAGAGGCCGTGGTCAATATGGCCGTGGTCGTGGATATGGGAGTAACAATATATTACCTCAACTAGAATCAAACATTCCTTTAATAGGGGATTGGACAACTGTGCAAAATAATAGAGGAAGGCAAGTGTCTTTACCTTCAAAAAGAGATGAAGTATCTTCTTCATCTTCTACAAATAAGACAATATCTTATAAGCAAGTTGCAGTTGAGGAATCTCCTCAAGAGCGGGTATTCAAAAACCCTGTCACAGAAACCATCATGTATATTGATGATGAGGATTTATCTTTGACCAATAATGACGGTTGGTCAATAAAAGGAAGATATCTTGAATCTAGAGGATATCCTGGACTTTTTGGAAAATCTAGACCAAATCTAGAAATATTATTGACAGTTACTGAATCAGTAACAATTACCCACCATTACCAAAATAATAACCAAGAAAGTTTTATAAACTTTTCAAAATGTCATGTTAATAAGATCTTGTTACCAAAAGAATGGGGTCAAAATCCAAATGGAGAGAAGGCTATAAAAATTGCTGAAGGTAAATATATTTACTTCAATTATTGGGATTATATCCAAGCTTTTACTCAAGCTTTCTATTATCAAAACCCTAAGAATAAACATGCGTGGTTCTTCTCAGTTAACCCTGAAATAGTGGAAAAACCTATACCAAATTGGTTTTATGACTGGTGGCTAAAATTTGGTCCATCACTTGAGATTTTGCCAGAAAGTATACAAAATTTGTATACTTCATGGTGTGACAAAAGCCCTTTAATTACACAAGTAGCTTTGTGTAAAATGATTACTGGACAATGTCCATGTCTATTTTTTAGTAAATTCCAAATTCTTTGGTTTTGGAGATGGTCAATTATTATATCTAAGGATAAGAATAATATTCCTGTATTACAAAGGAACTTCTTCTACAAATGGTGGACGAAAATGAGTCCCGAAGATATTAAAGCAATAGCTTTAAATATTACCAATACTATTAAAATAGATGAGACAGAGAATGTAAAAGAGCAAAGCTCTCATAATTTCTCAATAGATGAAGTAAAAAATTATTATCAAAGGAAATATCCTCAAGAAACTGAAGATCAAATTATGATCAGAGTTTTAGATTATATGAAGAAACAATTTTTTAGTTCTTTCCCTTCAAAAGCATCTTCTAATGAAGATGGAATGTCCACTTCGTCCTTGGGATCAAAAGATTTTGAAGAAGATATTGCAGGAGAATCACAACCTGTAGAACCTACATTAGAAGATGTATGGGATTCTTTGATAGCACACATGACAAAATAA

Protein sequence

>MsG0780037513.01.T01

MTTPYRGRGRGQYGRGRGYGSNNILPQLESNIPLIGDWTTVQNNRGRQVSLPSKRDEVSSSSSTNKTISYKQVAVEESPQERVFKNPVTETIMYIDDEDLSLTNNDGWSIKGRYLESRGYPGLFGKSRPNLEILLTVTESVTITHHYQNNNQESFINFSKCHVNKILLPKEWGQNPNGEKAIKIAEGKYIYFNYWDYIQAFTQAFYYQNPKNKHAWFFSVNPEIVEKPIPNWFYDWWLKFGPSLEILPESIQNLYTSWCDKSPLITQVALCKMITGQCPCLFFSKFQILWFWRWSIIISKDKNNIPVLQRNFFYKWWTKMSPEDIKAIALNITNTIKIDETENVKEQSSHNFSIDEVKNYYQRKYPQETEDQIMIRVLDYMKKQFFSSFPSKASSNEDGMSTSSLGSKDFEEDIAGESQPVEPTLEDVWDSLIAHMTK*