Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037640.01.T01 | KEH22226.1 | 91.429 | 245 | 21 | 0 | 7 | 251 | 65 | 309 | 2.22E-166 | 487 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037640.01.T01 | Q9LRH8 | 89.388 | 245 | 26 | 0 | 7 | 251 | 130 | 374 | 2.14E-164 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037640.01.T01 | A0A072TYF7 | 91.429 | 245 | 21 | 0 | 7 | 251 | 65 | 309 | 1.06e-166 | 487 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0780037640.01 | MsG0780037642.01 | 0.843017 | 1.814560e-58 | 2.801253e-55 |
| MsG0780037640.01 | MsG0780037676.01 | 0.830712 | 2.515972e-55 | 2.672324e-52 |
| MsG0780037640.01 | MsG0780037679.01 | 0.851144 | 1.074271e-60 | 2.153775e-57 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037640.01.T01 | MTR_7g034535 | 91.429 | 245 | 21 | 0 | 7 | 251 | 65 | 309 | 2.69e-170 | 487 |
| MsG0780037640.01.T01 | MTR_4g005270 | 90.612 | 245 | 23 | 0 | 7 | 251 | 130 | 374 | 9.09e-168 | 483 |
| MsG0780037640.01.T01 | MTR_4g005190 | 88.980 | 245 | 27 | 0 | 7 | 251 | 130 | 374 | 2.24e-166 | 476 |
| MsG0780037640.01.T01 | MTR_4g005190 | 88.980 | 245 | 27 | 0 | 7 | 251 | 130 | 374 | 2.69e-165 | 476 |
| MsG0780037640.01.T01 | MTR_0013s0230 | 86.122 | 245 | 34 | 0 | 7 | 251 | 130 | 374 | 2.31e-159 | 461 |
| MsG0780037640.01.T01 | MTR_8g016975 | 81.633 | 245 | 45 | 0 | 7 | 251 | 130 | 374 | 2.74e-150 | 438 |
| MsG0780037640.01.T01 | MTR_8g017020 | 81.224 | 245 | 46 | 0 | 7 | 251 | 96 | 340 | 6.51e-150 | 436 |
| MsG0780037640.01.T01 | MTR_8g016960 | 82.278 | 237 | 42 | 0 | 15 | 251 | 132 | 368 | 1.15e-145 | 426 |
| MsG0780037640.01.T01 | MTR_3g436160 | 81.301 | 246 | 40 | 2 | 7 | 251 | 73 | 313 | 5.01e-144 | 420 |
| MsG0780037640.01.T01 | MTR_6g093180 | 62.651 | 249 | 92 | 1 | 7 | 255 | 128 | 375 | 2.24e-115 | 348 |
| MsG0780037640.01.T01 | MTR_6g034985 | 62.041 | 245 | 92 | 1 | 7 | 251 | 128 | 371 | 2.79e-109 | 332 |
| MsG0780037640.01.T01 | MTR_6g088140 | 55.422 | 249 | 109 | 2 | 7 | 255 | 113 | 359 | 2.33e-97 | 299 |
| MsG0780037640.01.T01 | MTR_5g008810 | 60.408 | 245 | 95 | 2 | 7 | 251 | 129 | 371 | 3.86e-97 | 301 |
| MsG0780037640.01.T01 | MTR_6g088140 | 55.422 | 249 | 109 | 2 | 7 | 255 | 113 | 359 | 1.38e-96 | 299 |
| MsG0780037640.01.T01 | MTR_6g093100 | 55.422 | 249 | 109 | 2 | 7 | 255 | 139 | 385 | 5.77e-96 | 298 |
| MsG0780037640.01.T01 | MTR_7g062020 | 53.257 | 261 | 119 | 3 | 7 | 266 | 140 | 398 | 1.21e-94 | 295 |
| MsG0780037640.01.T01 | MTR_6g035010 | 55.510 | 245 | 108 | 1 | 7 | 251 | 128 | 371 | 1.18e-93 | 291 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037640.01.T01 | AT1G78950 | 81.224 | 245 | 46 | 0 | 7 | 251 | 140 | 384 | 1.68e-150 | 439 |
| MsG0780037640.01.T01 | AT1G78950 | 81.224 | 245 | 46 | 0 | 7 | 251 | 131 | 375 | 1.77e-150 | 439 |
| MsG0780037640.01.T01 | AT1G78955 | 77.959 | 245 | 54 | 0 | 7 | 251 | 66 | 310 | 1.16e-138 | 404 |
| MsG0780037640.01.T01 | AT1G78955 | 77.959 | 245 | 54 | 0 | 7 | 251 | 66 | 310 | 3.91e-138 | 404 |
| MsG0780037640.01.T01 | AT1G78955 | 77.959 | 245 | 54 | 0 | 7 | 251 | 66 | 310 | 1.44e-137 | 404 |
| MsG0780037640.01.T01 | AT1G78955 | 77.959 | 245 | 54 | 0 | 7 | 251 | 131 | 375 | 4.38e-137 | 404 |
| MsG0780037640.01.T01 | AT1G78960 | 72.245 | 245 | 68 | 0 | 7 | 251 | 131 | 375 | 3.16e-134 | 396 |
| MsG0780037640.01.T01 | AT1G78960 | 72.245 | 245 | 68 | 0 | 7 | 251 | 131 | 375 | 4.14e-134 | 397 |
| MsG0780037640.01.T01 | AT1G78960 | 72.245 | 245 | 68 | 0 | 7 | 251 | 131 | 375 | 4.14e-134 | 397 |
| MsG0780037640.01.T01 | AT1G78960 | 72.245 | 245 | 68 | 0 | 7 | 251 | 131 | 375 | 4.14e-134 | 397 |
| MsG0780037640.01.T01 | AT1G66960 | 72.541 | 244 | 67 | 0 | 7 | 250 | 131 | 374 | 7.29e-133 | 394 |
| MsG0780037640.01.T01 | AT1G66960 | 72.541 | 244 | 67 | 0 | 7 | 250 | 131 | 374 | 7.29e-133 | 394 |
| MsG0780037640.01.T01 | AT1G66960 | 72.541 | 244 | 67 | 0 | 7 | 250 | 131 | 374 | 7.29e-133 | 394 |
| MsG0780037640.01.T01 | AT1G66960 | 72.541 | 244 | 67 | 0 | 7 | 250 | 140 | 383 | 9.85e-133 | 393 |
| MsG0780037640.01.T01 | AT1G78960 | 72.768 | 224 | 61 | 0 | 28 | 251 | 1 | 224 | 4.89e-124 | 366 |
| MsG0780037640.01.T01 | AT1G78970 | 71.020 | 245 | 68 | 1 | 7 | 251 | 131 | 372 | 2.04e-114 | 346 |
| MsG0780037640.01.T01 | AT1G78970 | 71.020 | 245 | 68 | 1 | 7 | 251 | 131 | 372 | 2.04e-114 | 346 |
| MsG0780037640.01.T01 | AT1G78970 | 71.020 | 245 | 68 | 1 | 7 | 251 | 131 | 372 | 2.04e-114 | 346 |
| MsG0780037640.01.T01 | AT5G36150 | 61.633 | 245 | 94 | 0 | 7 | 251 | 131 | 375 | 8.30e-114 | 344 |
| MsG0780037640.01.T01 | AT5G36150 | 61.633 | 245 | 94 | 0 | 7 | 251 | 131 | 375 | 8.30e-114 | 344 |
| MsG0780037640.01.T01 | AT4G15370 | 58.594 | 256 | 101 | 2 | 7 | 261 | 131 | 382 | 6.75e-109 | 332 |
| MsG0780037640.01.T01 | AT4G15370 | 59.756 | 246 | 98 | 1 | 7 | 251 | 131 | 376 | 1.56e-108 | 330 |
| MsG0780037640.01.T01 | AT1G78955 | 78.500 | 200 | 43 | 0 | 52 | 251 | 1 | 200 | 4.43e-108 | 325 |
| MsG0780037640.01.T01 | AT2G07050 | 59.592 | 245 | 97 | 2 | 7 | 251 | 38 | 280 | 2.35e-107 | 325 |
| MsG0780037640.01.T01 | AT2G07050 | 59.592 | 245 | 97 | 2 | 7 | 251 | 129 | 371 | 1.03e-106 | 326 |
| MsG0780037640.01.T01 | AT5G48010 | 59.919 | 247 | 96 | 2 | 7 | 251 | 131 | 376 | 1.37e-106 | 325 |
| MsG0780037640.01.T01 | AT5G48010 | 59.919 | 247 | 96 | 2 | 7 | 251 | 131 | 376 | 1.64e-106 | 325 |
| MsG0780037640.01.T01 | AT4G15340 | 59.109 | 247 | 99 | 1 | 7 | 251 | 131 | 377 | 5.58e-106 | 319 |
| MsG0780037640.01.T01 | AT1G78500 | 59.350 | 246 | 98 | 1 | 7 | 250 | 131 | 376 | 8.55e-105 | 321 |
| MsG0780037640.01.T01 | AT1G78500 | 59.350 | 246 | 98 | 1 | 7 | 250 | 131 | 376 | 8.55e-105 | 321 |
| MsG0780037640.01.T01 | AT4G15340 | 59.109 | 247 | 99 | 1 | 7 | 251 | 131 | 377 | 2.56e-104 | 320 |
| MsG0780037640.01.T01 | AT5G42600 | 59.184 | 245 | 99 | 1 | 7 | 250 | 131 | 375 | 4.80e-103 | 316 |
| MsG0780037640.01.T01 | AT3G45130 | 58.367 | 245 | 100 | 2 | 7 | 251 | 129 | 371 | 8.95e-91 | 284 |
| MsG0780037640.01.T01 | AT3G45130 | 58.367 | 245 | 100 | 2 | 7 | 251 | 129 | 371 | 8.95e-91 | 284 |
| MsG0780037640.01.T01 | AT3G45130 | 58.367 | 245 | 100 | 2 | 7 | 251 | 129 | 371 | 8.95e-91 | 284 |
| MsG0780037640.01.T01 | AT3G45130 | 58.367 | 245 | 100 | 2 | 7 | 251 | 129 | 371 | 1.19e-90 | 284 |
| MsG0780037640.01.T01 | AT3G45130 | 58.367 | 245 | 100 | 2 | 7 | 251 | 129 | 371 | 1.19e-90 | 284 |
| MsG0780037640.01.T01 | AT3G29255 | 56.944 | 216 | 92 | 1 | 37 | 251 | 106 | 321 | 2.53e-89 | 279 |
| MsG0780037640.01.T01 | AT1G78480 | 70.312 | 64 | 19 | 0 | 14 | 77 | 114 | 177 | 2.23e-26 | 102 |
Find 59 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGATGAAACACAAATTTC+AGG | 0.213393 | 7:+29941287 | None:intergenic |
| CTTTGATACAAAATCTGATT+TGG | 0.226696 | 7:+29942343 | MsG0780037640.01.T01:CDS |
| TATATATGCATGAGAATTCT+TGG | 0.285411 | 7:+29941601 | MsG0780037640.01.T01:CDS |
| TCGTTGGCCTTTCAACAAAT+TGG | 0.314876 | 7:+29942401 | MsG0780037640.01.T01:CDS |
| TTTGATACAAAATCTGATTT+GGG | 0.357650 | 7:+29942344 | MsG0780037640.01.T01:CDS |
| CATTACGGGACATCTTGATT+TGG | 0.363637 | 7:+29941323 | MsG0780037640.01.T01:CDS |
| CTTGGTGTATTTGATTGGTC+TGG | 0.373298 | 7:+29941888 | MsG0780037640.01.T01:CDS |
| AGATACTTGGTGTATTTGAT+TGG | 0.373700 | 7:+29941883 | MsG0780037640.01.T01:intron |
| TATGCTTCATTGTTACTTGA+AGG | 0.399431 | 7:-29942437 | None:intergenic |
| GTGTAACACATATACCTTCA+TGG | 0.413324 | 7:+29941692 | MsG0780037640.01.T01:CDS |
| TCGTTACATATATTGTCATC+AGG | 0.428039 | 7:+29941377 | MsG0780037640.01.T01:CDS |
| AACCATGGGGTCTGTAGAAA+AGG | 0.430084 | 7:+29942491 | MsG0780037640.01.T01:CDS |
| CTTGTGCTAGAGCAAGAAAC+TGG | 0.430474 | 7:+29941653 | MsG0780037640.01.T01:CDS |
| TCATTTCTTCCTATGCATCC+AGG | 0.456615 | 7:+29941948 | MsG0780037640.01.T01:CDS |
| TGTAACACATATACCTTCAT+GGG | 0.466293 | 7:+29941693 | MsG0780037640.01.T01:CDS |
| TTTCTTTATCTATAGATACT+TGG | 0.466656 | 7:+29941870 | MsG0780037640.01.T01:intron |
| CTTGTACGGGAAGAGGTTTG+TGG | 0.469308 | 7:+29942124 | MsG0780037640.01.T01:CDS |
| TTGTACGGGAAGAGGTTTGT+GGG | 0.471187 | 7:+29942125 | MsG0780037640.01.T01:CDS |
| ATCTCTTTGCGATACTCTTG+TGG | 0.477953 | 7:-29941351 | None:intergenic |
| GAAGGAAGGATCCAAAACTC+TGG | 0.482022 | 7:-29941927 | None:intergenic |
| ATGTCTATGTCTTACTTGTA+CGG | 0.484617 | 7:+29942110 | MsG0780037640.01.T01:CDS |
| TCTCTTACCAATTTGTTGAA+AGG | 0.487619 | 7:-29942408 | None:intergenic |
| CTAATTGAACCTGGATGCAT+AGG | 0.497925 | 7:-29941957 | None:intergenic |
| TGTCTTACTTGTACGGGAAG+AGG | 0.502371 | 7:+29942117 | MsG0780037640.01.T01:CDS |
| CACCTTTGCACATAGGTGAC+GGG | 0.508050 | 7:-29942225 | None:intergenic |
| TCTCTTTGCGATACTCTTGT+GGG | 0.513688 | 7:-29941350 | None:intergenic |
| ATGCTTCATTGTTACTTGAA+GGG | 0.514618 | 7:-29942436 | None:intergenic |
| GAAGAATGAAGATGGAGGGT+GGG | 0.515233 | 7:+29941531 | MsG0780037640.01.T01:intron |
| GTGAGCCACTTCTCACTCGT+TGG | 0.517487 | 7:+29942385 | MsG0780037640.01.T01:CDS |
| AAGGAAGGATCCAAAACTCT+GGG | 0.518131 | 7:-29941926 | None:intergenic |
| TGAAGAATGAAGATGGAGGG+TGG | 0.532533 | 7:+29941530 | MsG0780037640.01.T01:intron |
| AATTAATTGTAGGTAAAATG+TGG | 0.537747 | 7:+29942066 | MsG0780037640.01.T01:intron |
| TGCATGAGAATTCTTGGAGA+AGG | 0.540709 | 7:+29941607 | MsG0780037640.01.T01:CDS |
| GCATTGTCTTGACCTCCATC+AGG | 0.541398 | 7:-29941631 | None:intergenic |
| AAGAATGAAGATGGAGGGTG+GGG | 0.542058 | 7:+29941532 | MsG0780037640.01.T01:intron |
| TGTCTATGTCTTACTTGTAC+GGG | 0.556264 | 7:+29942111 | MsG0780037640.01.T01:CDS |
| CGACCCTCACCTTTGCACAT+AGG | 0.559966 | 7:-29942232 | None:intergenic |
| TCACCTTTGCACATAGGTGA+CGG | 0.570059 | 7:-29942226 | None:intergenic |
| AATAGTCGATACATAACCAT+GGG | 0.570508 | 7:+29942477 | MsG0780037640.01.T01:CDS |
| GGATGCATAGGAAGAAATGA+AGG | 0.572300 | 7:-29941945 | None:intergenic |
| ATTCTTGGAGAAGGGCCTGA+TGG | 0.579910 | 7:+29941616 | MsG0780037640.01.T01:CDS |
| GCATGAGAATTCTTGGAGAA+GGG | 0.585128 | 7:+29941608 | MsG0780037640.01.T01:CDS |
| GACTATTCTCATCCTCGTAG+TGG | 0.592078 | 7:-29942461 | None:intergenic |
| AGAAACTGGATTCGTGATCA+CGG | 0.598192 | 7:+29941667 | MsG0780037640.01.T01:CDS |
| TCTCTCAACTGTAATATGAG+TGG | 0.603226 | 7:-29942158 | None:intergenic |
| CTTGGAGAAGGGCCTGATGG+AGG | 0.612929 | 7:+29941619 | MsG0780037640.01.T01:CDS |
| AGCCCGTCACCTATGTGCAA+AGG | 0.613669 | 7:+29942223 | MsG0780037640.01.T01:CDS |
| GGGTGGGGTCTACACATTGA+GGG | 0.623596 | 7:+29941547 | MsG0780037640.01.T01:CDS |
| AAAGGCCAACGAGTGAGAAG+TGG | 0.626753 | 7:-29942390 | None:intergenic |
| GCATAGGAAGAAATGAAGGA+AGG | 0.633205 | 7:-29941941 | None:intergenic |
| AGGGTGGGGTCTACACATTG+AGG | 0.633661 | 7:+29941546 | MsG0780037640.01.T01:CDS |
| GGAAGGATCCAAAACTCTGG+GGG | 0.670148 | 7:-29941924 | None:intergenic |
| GAATAGTCGATACATAACCA+TGG | 0.670449 | 7:+29942476 | MsG0780037640.01.T01:CDS |
| GTTGAGTGCAGTACAAAACA+TGG | 0.674695 | 7:-29941578 | None:intergenic |
| GTAACACATATACCTTCATG+GGG | 0.695399 | 7:+29941694 | MsG0780037640.01.T01:CDS |
| AGGAAGGATCCAAAACTCTG+GGG | 0.711582 | 7:-29941925 | None:intergenic |
| AACTGGATTCGTGATCACGG+TGG | 0.769493 | 7:+29941670 | MsG0780037640.01.T01:CDS |
| ATAGTCGATACATAACCATG+GGG | 0.779304 | 7:+29942478 | MsG0780037640.01.T01:CDS |
| AATGAAGCATATCCACTACG+AGG | 0.801868 | 7:+29942449 | MsG0780037640.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTTATGAAAAAGTTAAT+TGG | + | Chr7:29942195-29942214 | MsG0780037640.01.T01:CDS | 15.0% |
| !! | ATATATATTTGCATAACAAA+TGG | - | Chr7:29941449-29941468 | None:intergenic | 15.0% |
| !! | TATATATTTGCATAACAAAT+GGG | - | Chr7:29941448-29941467 | None:intergenic | 15.0% |
| !!! | TTTTCACATTAATTAATTGT+AGG | + | Chr7:29942056-29942075 | MsG0780037640.01.T01:intron | 15.0% |
| !! | AATTAATTGTAGGTAAAATG+TGG | + | Chr7:29942066-29942085 | MsG0780037640.01.T01:intron | 20.0% |
| !! | ATATAGTAGTAAATAGTTAG+TGG | - | Chr7:29941837-29941856 | None:intergenic | 20.0% |
| !! | TAGATAAAGAAAACATTTGA+AGG | - | Chr7:29941862-29941881 | None:intergenic | 20.0% |
| !! | TTTCTTTATCTATAGATACT+TGG | + | Chr7:29941870-29941889 | MsG0780037640.01.T01:intron | 20.0% |
| !! | TTTGATACAAAATCTGATTT+GGG | + | Chr7:29942344-29942363 | MsG0780037640.01.T01:CDS | 20.0% |
| !!! | ATTTTTTACATTTAGGGTTT+AGG | + | Chr7:29941738-29941757 | MsG0780037640.01.T01:intron | 20.0% |
| !!! | GGTACAATTTTTTACATTTA+GGG | + | Chr7:29941732-29941751 | MsG0780037640.01.T01:intron | 20.0% |
| ! | CTGTATAATACAGCATAAAA+TGG | - | Chr7:29942301-29942320 | None:intergenic | 25.0% |
| ! | CTTTGAATGATAACATACAT+AGG | + | Chr7:29942262-29942281 | MsG0780037640.01.T01:intron | 25.0% |
| ! | CTTTGATACAAAATCTGATT+TGG | + | Chr7:29942343-29942362 | MsG0780037640.01.T01:CDS | 25.0% |
| ! | TATATATGCATGAGAATTCT+TGG | + | Chr7:29941601-29941620 | MsG0780037640.01.T01:CDS | 25.0% |
| !! | CAAATCAGATTTTGTATCAA+AGG | - | Chr7:29942345-29942364 | None:intergenic | 25.0% |
| !! | CATTTTATGCTGTATTATAC+AGG | + | Chr7:29942299-29942318 | MsG0780037640.01.T01:intron | 25.0% |
| !!! | CGGTACAATTTTTTACATTT+AGG | + | Chr7:29941731-29941750 | MsG0780037640.01.T01:intron | 25.0% |
| !!! | GGTTTTTTGTGTTTACATTA+CGG | + | Chr7:29941308-29941327 | MsG0780037640.01.T01:CDS | 25.0% |
| !!! | GTTTTTTGTGTTTACATTAC+GGG | + | Chr7:29941309-29941328 | MsG0780037640.01.T01:CDS | 25.0% |
| !!! | TTTCTTTTGAAGAATGAAGA+TGG | + | Chr7:29941523-29941542 | MsG0780037640.01.T01:intron | 25.0% |
| AATAGTCGATACATAACCAT+GGG | + | Chr7:29942477-29942496 | MsG0780037640.01.T01:CDS | 30.0% | |
| AATGATAACATACATAGGAG+GGG | + | Chr7:29942267-29942286 | MsG0780037640.01.T01:intron | 30.0% | |
| ATGTCTATGTCTTACTTGTA+CGG | + | Chr7:29942110-29942129 | MsG0780037640.01.T01:CDS | 30.0% | |
| CATAATCAACTAATTGAACC+TGG | - | Chr7:29941969-29941988 | None:intergenic | 30.0% | |
| GAATGATAACATACATAGGA+GGG | + | Chr7:29942266-29942285 | MsG0780037640.01.T01:intron | 30.0% | |
| GTGAATTTGTATGCTGAAAT+TGG | - | Chr7:29941426-29941445 | None:intergenic | 30.0% | |
| TCGTTACATATATTGTCATC+AGG | + | Chr7:29941377-29941396 | MsG0780037640.01.T01:CDS | 30.0% | |
| TGAATGATAACATACATAGG+AGG | + | Chr7:29942265-29942284 | MsG0780037640.01.T01:intron | 30.0% | |
| TGTAACACATATACCTTCAT+GGG | + | Chr7:29941693-29941712 | MsG0780037640.01.T01:CDS | 30.0% | |
| TGTGTGAAATGAACAAACAT+TGG | + | Chr7:29942011-29942030 | MsG0780037640.01.T01:intron | 30.0% | |
| TTGAGATAAAGTTCTTCATG+TGG | + | Chr7:29941497-29941516 | MsG0780037640.01.T01:intron | 30.0% | |
| ! | ATGCTTCATTGTTACTTGAA+GGG | - | Chr7:29942439-29942458 | None:intergenic | 30.0% |
| ! | TATGCTTCATTGTTACTTGA+AGG | - | Chr7:29942440-29942459 | None:intergenic | 30.0% |
| ! | TCAGATTTTGTATCAAAGGA+CGG | - | Chr7:29942341-29942360 | None:intergenic | 30.0% |
| !! | AGATACTTGGTGTATTTGAT+TGG | + | Chr7:29941883-29941902 | MsG0780037640.01.T01:intron | 30.0% |
| !! | TCTCTTACCAATTTGTTGAA+AGG | - | Chr7:29942411-29942430 | None:intergenic | 30.0% |
| !! | TTTTGAAGAATGAAGATGGA+GGG | + | Chr7:29941527-29941546 | MsG0780037640.01.T01:intron | 30.0% |
| AAAAAATTGTACCGAAAGCC+AGG | - | Chr7:29941725-29941744 | None:intergenic | 35.0% | |
| AGATAAAGTTCTTCATGTGG+TGG | + | Chr7:29941500-29941519 | MsG0780037640.01.T01:intron | 35.0% | |
| ATAGTCGATACATAACCATG+GGG | + | Chr7:29942478-29942497 | MsG0780037640.01.T01:CDS | 35.0% | |
| GAATAGTCGATACATAACCA+TGG | + | Chr7:29942476-29942495 | MsG0780037640.01.T01:CDS | 35.0% | |
| GTAACACATATACCTTCATG+GGG | + | Chr7:29941694-29941713 | MsG0780037640.01.T01:CDS | 35.0% | |
| GTGTAACACATATACCTTCA+TGG | + | Chr7:29941692-29941711 | MsG0780037640.01.T01:CDS | 35.0% | |
| TCTCTCAACTGTAATATGAG+TGG | - | Chr7:29942161-29942180 | None:intergenic | 35.0% | |
| TGTCTATGTCTTACTTGTAC+GGG | + | Chr7:29942111-29942130 | MsG0780037640.01.T01:CDS | 35.0% | |
| ! | AGATTTTGTATCAAAGGACG+GGG | - | Chr7:29942339-29942358 | None:intergenic | 35.0% |
| ! | CAGATTTTGTATCAAAGGAC+GGG | - | Chr7:29942340-29942359 | None:intergenic | 35.0% |
| ! | TATTTTCTCTCGTTTCTTCG+TGG | - | Chr7:29941801-29941820 | None:intergenic | 35.0% |
| !! | CTTTTGAAGAATGAAGATGG+AGG | + | Chr7:29941526-29941545 | MsG0780037640.01.T01:intron | 35.0% |
| AAGGAAGGATCCAAAACTCT+GGG | - | Chr7:29941929-29941948 | None:intergenic | 40.0% | |
| AATGAAGCATATCCACTACG+AGG | + | Chr7:29942449-29942468 | MsG0780037640.01.T01:CDS | 40.0% | |
| AGAAACTGGATTCGTGATCA+CGG | + | Chr7:29941667-29941686 | MsG0780037640.01.T01:CDS | 40.0% | |
| ATCTCTTTGCGATACTCTTG+TGG | - | Chr7:29941354-29941373 | None:intergenic | 40.0% | |
| CATTACGGGACATCTTGATT+TGG | + | Chr7:29941323-29941342 | MsG0780037640.01.T01:CDS | 40.0% | |
| CTAATTGAACCTGGATGCAT+AGG | - | Chr7:29941960-29941979 | None:intergenic | 40.0% | |
| GCATAGGAAGAAATGAAGGA+AGG | - | Chr7:29941944-29941963 | None:intergenic | 40.0% | |
| GCATGAGAATTCTTGGAGAA+GGG | + | Chr7:29941608-29941627 | MsG0780037640.01.T01:CDS | 40.0% | |
| GGATGCATAGGAAGAAATGA+AGG | - | Chr7:29941948-29941967 | None:intergenic | 40.0% | |
| GTTGAGTGCAGTACAAAACA+TGG | - | Chr7:29941581-29941600 | None:intergenic | 40.0% | |
| TCATTTCTTCCTATGCATCC+AGG | + | Chr7:29941948-29941967 | MsG0780037640.01.T01:CDS | 40.0% | |
| TCTCTTTGCGATACTCTTGT+GGG | - | Chr7:29941353-29941372 | None:intergenic | 40.0% | |
| TGCATGAGAATTCTTGGAGA+AGG | + | Chr7:29941607-29941626 | MsG0780037640.01.T01:CDS | 40.0% | |
| ! | CTTGGTGTATTTGATTGGTC+TGG | + | Chr7:29941888-29941907 | MsG0780037640.01.T01:CDS | 40.0% |
| !! | TCGTTGGCCTTTCAACAAAT+TGG | + | Chr7:29942401-29942420 | MsG0780037640.01.T01:CDS | 40.0% |
| AACCATGGGGTCTGTAGAAA+AGG | + | Chr7:29942491-29942510 | MsG0780037640.01.T01:CDS | 45.0% | |
| AAGAATGAAGATGGAGGGTG+GGG | + | Chr7:29941532-29941551 | MsG0780037640.01.T01:intron | 45.0% | |
| AGGAAGGATCCAAAACTCTG+GGG | - | Chr7:29941928-29941947 | None:intergenic | 45.0% | |
| CTTGTGCTAGAGCAAGAAAC+TGG | + | Chr7:29941653-29941672 | MsG0780037640.01.T01:CDS | 45.0% | |
| GAAGAATGAAGATGGAGGGT+GGG | + | Chr7:29941531-29941550 | MsG0780037640.01.T01:intron | 45.0% | |
| GAAGGAAGGATCCAAAACTC+TGG | - | Chr7:29941930-29941949 | None:intergenic | 45.0% | |
| GACTATTCTCATCCTCGTAG+TGG | - | Chr7:29942464-29942483 | None:intergenic | 45.0% | |
| TACCTTCATGGGGAAAAACC+TGG | + | Chr7:29941704-29941723 | MsG0780037640.01.T01:CDS | 45.0% | |
| TCACCTATGTGCAAAGGTGA+GGG | + | Chr7:29942229-29942248 | MsG0780037640.01.T01:intron | 45.0% | |
| TCACCTTTGCACATAGGTGA+CGG | - | Chr7:29942229-29942248 | None:intergenic | 45.0% | |
| TGAAGAATGAAGATGGAGGG+TGG | + | Chr7:29941530-29941549 | MsG0780037640.01.T01:intron | 45.0% | |
| TGTCTTACTTGTACGGGAAG+AGG | + | Chr7:29942117-29942136 | MsG0780037640.01.T01:CDS | 45.0% | |
| TTGTACGGGAAGAGGTTTGT+GGG | + | Chr7:29942125-29942144 | MsG0780037640.01.T01:CDS | 45.0% | |
| ! | ATGGGGAAAAACCTGGCTTT+CGG | + | Chr7:29941711-29941730 | MsG0780037640.01.T01:CDS | 45.0% |
| ! | TACCTTTTCTACAGACCCCA+TGG | - | Chr7:29942496-29942515 | None:intergenic | 45.0% |
| AAAGGCCAACGAGTGAGAAG+TGG | - | Chr7:29942393-29942412 | None:intergenic | 50.0% | |
| AACTGGATTCGTGATCACGG+TGG | + | Chr7:29941670-29941689 | MsG0780037640.01.T01:CDS | 50.0% | |
| ATTCTTGGAGAAGGGCCTGA+TGG | + | Chr7:29941616-29941635 | MsG0780037640.01.T01:CDS | 50.0% | |
| CACCTTTGCACATAGGTGAC+GGG | - | Chr7:29942228-29942247 | None:intergenic | 50.0% | |
| CTTGTACGGGAAGAGGTTTG+TGG | + | Chr7:29942124-29942143 | MsG0780037640.01.T01:CDS | 50.0% | |
| GCATTGTCTTGACCTCCATC+AGG | - | Chr7:29941634-29941653 | None:intergenic | 50.0% | |
| GGAAGGATCCAAAACTCTGG+GGG | - | Chr7:29941927-29941946 | None:intergenic | 50.0% | |
| GTCACCTATGTGCAAAGGTG+AGG | + | Chr7:29942228-29942247 | MsG0780037640.01.T01:intron | 50.0% | |
| ! | AGCCAGGTTTTTCCCCATGA+AGG | - | Chr7:29941709-29941728 | None:intergenic | 50.0% |
| ! | ATCCAAAACTCTGGGGGCAT+TGG | - | Chr7:29941921-29941940 | None:intergenic | 50.0% |
| !! | TCCAAAACTCTGGGGGCATT+GGG | - | Chr7:29941920-29941939 | None:intergenic | 50.0% |
| AGCCCGTCACCTATGTGCAA+AGG | + | Chr7:29942223-29942242 | MsG0780037640.01.T01:CDS | 55.0% | |
| AGGGTGGGGTCTACACATTG+AGG | + | Chr7:29941546-29941565 | MsG0780037640.01.T01:CDS | 55.0% | |
| CGACCCTCACCTTTGCACAT+AGG | - | Chr7:29942235-29942254 | None:intergenic | 55.0% | |
| GGGTGGGGTCTACACATTGA+GGG | + | Chr7:29941547-29941566 | MsG0780037640.01.T01:CDS | 55.0% | |
| GTGAGCCACTTCTCACTCGT+TGG | + | Chr7:29942385-29942404 | MsG0780037640.01.T01:CDS | 55.0% | |
| ! | ACCCAATGCCCCCAGAGTTT+TGG | + | Chr7:29941916-29941935 | MsG0780037640.01.T01:CDS | 55.0% |
| CTTGGAGAAGGGCCTGATGG+AGG | + | Chr7:29941619-29941638 | MsG0780037640.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 29941291 | 29942566 | 29941291 | ID=MsG0780037640.01;Name=MsG0780037640.01 |
| Chr7 | mRNA | 29941291 | 29942566 | 29941291 | ID=MsG0780037640.01.T01;Parent=MsG0780037640.01;Name=MsG0780037640.01.T01;_AED=0.51;_eAED=0.51;_QI=0|1|0.6|1|0.75|0.6|5|0|267 |
| Chr7 | exon | 29941291 | 29941398 | 29941291 | ID=MsG0780037640.01.T01:exon:7050;Parent=MsG0780037640.01.T01 |
| Chr7 | exon | 29941535 | 29941732 | 29941535 | ID=MsG0780037640.01.T01:exon:7051;Parent=MsG0780037640.01.T01 |
| Chr7 | exon | 29941885 | 29941969 | 29941885 | ID=MsG0780037640.01.T01:exon:7052;Parent=MsG0780037640.01.T01 |
| Chr7 | exon | 29942078 | 29942244 | 29942078 | ID=MsG0780037640.01.T01:exon:7053;Parent=MsG0780037640.01.T01 |
| Chr7 | exon | 29942321 | 29942566 | 29942321 | ID=MsG0780037640.01.T01:exon:7054;Parent=MsG0780037640.01.T01 |
| Chr7 | CDS | 29941291 | 29941398 | 29941291 | ID=MsG0780037640.01.T01:cds;Parent=MsG0780037640.01.T01 |
| Chr7 | CDS | 29941535 | 29941732 | 29941535 | ID=MsG0780037640.01.T01:cds;Parent=MsG0780037640.01.T01 |
| Chr7 | CDS | 29941885 | 29941969 | 29941885 | ID=MsG0780037640.01.T01:cds;Parent=MsG0780037640.01.T01 |
| Chr7 | CDS | 29942078 | 29942244 | 29942078 | ID=MsG0780037640.01.T01:cds;Parent=MsG0780037640.01.T01 |
| Chr7 | CDS | 29942321 | 29942566 | 29942321 | ID=MsG0780037640.01.T01:cds;Parent=MsG0780037640.01.T01 |
| Gene Sequence |
| Protein sequence |
