Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037642.01.T01 | KEH22226.1 | 90.775 | 271 | 17 | 1 | 1 | 263 | 434 | 704 | 2.49E-174 | 507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037642.01.T01 | Q9MB42 | 77.903 | 267 | 50 | 2 | 1 | 259 | 499 | 764 | 1.73E-144 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037642.01.T01 | A0A072TYF7 | 90.775 | 271 | 17 | 1 | 1 | 263 | 434 | 704 | 1.19e-174 | 507 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004516.01 | MsG0780037642.01 | 0.826745 | 2.291476e-54 | 2.167850e-51 |
| MsG0180006054.01 | MsG0780037642.01 | 0.811162 | 8.037185e-51 | 4.938837e-48 |
| MsG0280011404.01 | MsG0780037642.01 | 0.822267 | 2.596030e-53 | 2.162312e-50 |
| MsG0680031996.01 | MsG0780037642.01 | 0.800035 | 1.741012e-48 | 8.023948e-46 |
| MsG0480019313.01 | MsG0780037642.01 | 0.804111 | 2.526923e-49 | 1.292001e-46 |
| MsG0480020323.01 | MsG0780037642.01 | 0.806119 | 9.602946e-50 | 5.170054e-47 |
| MsG0580025827.01 | MsG0780037642.01 | 0.803632 | 3.177311e-49 | 1.604657e-46 |
| MsG0580025832.01 | MsG0780037642.01 | 0.811632 | 6.352833e-51 | 3.952432e-48 |
| MsG0580026498.01 | MsG0780037642.01 | 0.803613 | 3.206853e-49 | 1.618777e-46 |
| MsG0780036509.01 | MsG0780037642.01 | 0.816561 | 5.190646e-52 | 3.690333e-49 |
| MsG0780037640.01 | MsG0780037642.01 | 0.843017 | 1.814560e-58 | 2.801253e-55 |
| MsG0780037642.01 | MsG0780037676.01 | 0.878592 | 2.479014e-69 | 1.301914e-65 |
| MsG0780037642.01 | MsG0780037678.01 | 0.816298 | 5.943396e-52 | 4.195556e-49 |
| MsG0780037642.01 | MsG0780037679.01 | 0.899682 | 1.556654e-77 | 1.945181e-73 |
| MsG0780037642.01 | MsG0780037715.01 | 0.865480 | 5.729556e-65 | 1.866878e-61 |
| MsG0780037642.01 | MsG0780037716.01 | 0.816374 | 5.715403e-52 | 4.042793e-49 |
| MsG0780037642.01 | MsG0780040285.01 | 0.824712 | 6.955635e-54 | 6.210754e-51 |
| MsG0780037642.01 | MsG0880041852.01 | 0.810992 | 8.746689e-51 | 5.351655e-48 |
| MsG0780037642.01 | MsG0880045771.01 | 0.817572 | 3.075559e-52 | 2.247988e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037642.01.T01 | MTR_7g034535 | 90.775 | 271 | 17 | 1 | 1 | 263 | 434 | 704 | 3.01e-178 | 507 |
| MsG0780037642.01.T01 | MTR_4g005190 | 78.491 | 265 | 48 | 2 | 1 | 257 | 499 | 762 | 6.38e-146 | 427 |
| MsG0780037642.01.T01 | MTR_0013s0230 | 74.717 | 265 | 59 | 1 | 1 | 257 | 499 | 763 | 1.28e-140 | 413 |
| MsG0780037642.01.T01 | MTR_4g005270 | 73.034 | 267 | 63 | 2 | 1 | 259 | 499 | 764 | 7.73e-137 | 404 |
| MsG0780037642.01.T01 | MTR_8g017020 | 69.811 | 265 | 71 | 2 | 1 | 257 | 465 | 728 | 3.58e-132 | 390 |
| MsG0780037642.01.T01 | MTR_8g016975 | 70.566 | 265 | 69 | 2 | 1 | 257 | 499 | 762 | 3.70e-132 | 391 |
| MsG0780037642.01.T01 | MTR_8g016940 | 65.779 | 263 | 83 | 2 | 1 | 257 | 10 | 271 | 1.39e-125 | 358 |
| MsG0780037642.01.T01 | MTR_3g436160 | 73.077 | 260 | 61 | 2 | 1 | 252 | 438 | 696 | 1.02e-124 | 370 |
| MsG0780037642.01.T01 | MTR_8g016960 | 66.541 | 266 | 79 | 2 | 1 | 257 | 493 | 757 | 1.95e-123 | 369 |
| MsG0780037642.01.T01 | MTR_6g093180 | 55.344 | 262 | 108 | 2 | 2 | 255 | 497 | 757 | 2.19e-99 | 306 |
| MsG0780037642.01.T01 | MTR_5g008810 | 55.642 | 257 | 105 | 2 | 2 | 250 | 498 | 753 | 3.20e-96 | 298 |
| MsG0780037642.01.T01 | MTR_6g034985 | 53.053 | 262 | 114 | 2 | 2 | 255 | 497 | 757 | 7.40e-96 | 297 |
| MsG0780037642.01.T01 | MTR_6g035010 | 52.941 | 255 | 111 | 2 | 2 | 248 | 497 | 750 | 1.23e-91 | 286 |
| MsG0780037642.01.T01 | MTR_4g005190 | 76.608 | 171 | 32 | 1 | 1 | 163 | 499 | 669 | 2.40e-87 | 273 |
| MsG0780037642.01.T01 | MTR_6g088140 | 52.874 | 261 | 112 | 4 | 2 | 252 | 482 | 741 | 1.51e-86 | 273 |
| MsG0780037642.01.T01 | MTR_7g062020 | 51.538 | 260 | 116 | 3 | 2 | 252 | 509 | 767 | 5.65e-86 | 272 |
| MsG0780037642.01.T01 | MTR_6g093100 | 51.301 | 269 | 112 | 5 | 2 | 252 | 508 | 775 | 4.64e-84 | 267 |
| MsG0780037642.01.T01 | MTR_6g088140 | 51.163 | 172 | 75 | 2 | 2 | 164 | 482 | 653 | 1.76e-51 | 178 |
| MsG0780037642.01.T01 | MTR_8g016570 | 66.667 | 63 | 21 | 0 | 190 | 252 | 28 | 90 | 7.21e-23 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037642.01.T01 | AT1G78955 | 62.963 | 270 | 91 | 2 | 1 | 262 | 325 | 593 | 5.72e-125 | 368 |
| MsG0780037642.01.T01 | AT1G78955 | 62.963 | 270 | 91 | 2 | 1 | 262 | 435 | 703 | 1.04e-123 | 368 |
| MsG0780037642.01.T01 | AT1G78955 | 62.963 | 270 | 91 | 2 | 1 | 262 | 500 | 768 | 6.00e-123 | 368 |
| MsG0780037642.01.T01 | AT1G78960 | 63.672 | 256 | 84 | 2 | 1 | 248 | 349 | 603 | 5.96e-118 | 350 |
| MsG0780037642.01.T01 | AT1G78960 | 63.672 | 256 | 84 | 2 | 1 | 248 | 500 | 754 | 4.45e-116 | 350 |
| MsG0780037642.01.T01 | AT1G78960 | 63.672 | 256 | 84 | 2 | 1 | 248 | 500 | 754 | 4.45e-116 | 350 |
| MsG0780037642.01.T01 | AT1G78960 | 63.672 | 256 | 84 | 2 | 1 | 248 | 500 | 754 | 4.45e-116 | 350 |
| MsG0780037642.01.T01 | AT1G78970 | 61.628 | 258 | 90 | 2 | 1 | 250 | 497 | 753 | 1.52e-114 | 346 |
| MsG0780037642.01.T01 | AT1G78970 | 61.628 | 258 | 90 | 2 | 1 | 250 | 497 | 753 | 1.52e-114 | 346 |
| MsG0780037642.01.T01 | AT1G78970 | 61.628 | 258 | 90 | 2 | 1 | 250 | 497 | 753 | 1.52e-114 | 346 |
| MsG0780037642.01.T01 | AT1G66960 | 60.000 | 255 | 93 | 2 | 2 | 248 | 501 | 754 | 1.08e-108 | 331 |
| MsG0780037642.01.T01 | AT1G66960 | 60.000 | 255 | 93 | 2 | 2 | 248 | 501 | 754 | 1.08e-108 | 331 |
| MsG0780037642.01.T01 | AT1G66960 | 60.000 | 255 | 93 | 2 | 2 | 248 | 501 | 754 | 1.08e-108 | 331 |
| MsG0780037642.01.T01 | AT1G66960 | 60.000 | 255 | 93 | 2 | 2 | 248 | 510 | 763 | 1.31e-108 | 331 |
| MsG0780037642.01.T01 | AT1G78950 | 63.846 | 260 | 85 | 2 | 1 | 252 | 500 | 758 | 3.90e-106 | 324 |
| MsG0780037642.01.T01 | AT1G78950 | 63.846 | 260 | 85 | 2 | 1 | 252 | 509 | 767 | 3.95e-106 | 324 |
| MsG0780037642.01.T01 | AT1G78955 | 64.000 | 225 | 72 | 2 | 1 | 217 | 435 | 658 | 1.02e-102 | 313 |
| MsG0780037642.01.T01 | AT1G78960 | 63.111 | 225 | 74 | 2 | 1 | 217 | 500 | 723 | 3.39e-98 | 303 |
| MsG0780037642.01.T01 | AT1G78500 | 56.870 | 262 | 102 | 3 | 2 | 253 | 507 | 767 | 1.96e-97 | 301 |
| MsG0780037642.01.T01 | AT1G78500 | 56.870 | 262 | 102 | 3 | 2 | 253 | 507 | 767 | 1.96e-97 | 301 |
| MsG0780037642.01.T01 | AT5G48010 | 53.435 | 262 | 109 | 3 | 2 | 251 | 506 | 766 | 4.33e-95 | 296 |
| MsG0780037642.01.T01 | AT4G15340 | 54.198 | 262 | 107 | 3 | 2 | 251 | 506 | 766 | 9.18e-93 | 290 |
| MsG0780037642.01.T01 | AT2G07050 | 53.668 | 259 | 111 | 2 | 2 | 252 | 407 | 664 | 1.06e-92 | 287 |
| MsG0780037642.01.T01 | AT2G07050 | 53.668 | 259 | 111 | 2 | 2 | 252 | 498 | 755 | 5.67e-92 | 287 |
| MsG0780037642.01.T01 | AT3G29255 | 54.054 | 259 | 110 | 2 | 2 | 252 | 447 | 704 | 6.26e-92 | 286 |
| MsG0780037642.01.T01 | AT5G42600 | 54.440 | 259 | 108 | 3 | 2 | 252 | 502 | 758 | 2.73e-90 | 283 |
| MsG0780037642.01.T01 | AT5G36150 | 52.510 | 259 | 114 | 2 | 2 | 252 | 501 | 758 | 3.82e-89 | 280 |
| MsG0780037642.01.T01 | AT5G36150 | 52.510 | 259 | 114 | 2 | 2 | 252 | 501 | 758 | 3.82e-89 | 280 |
| MsG0780037642.01.T01 | AT5G48010 | 51.527 | 262 | 106 | 4 | 2 | 251 | 506 | 758 | 1.63e-88 | 278 |
| MsG0780037642.01.T01 | AT3G45130 | 53.333 | 255 | 110 | 2 | 2 | 248 | 498 | 751 | 4.15e-88 | 277 |
| MsG0780037642.01.T01 | AT3G45130 | 53.333 | 255 | 110 | 2 | 2 | 248 | 498 | 751 | 4.15e-88 | 277 |
| MsG0780037642.01.T01 | AT3G45130 | 53.333 | 255 | 110 | 2 | 2 | 248 | 498 | 751 | 4.15e-88 | 277 |
| MsG0780037642.01.T01 | AT3G45130 | 53.333 | 255 | 110 | 2 | 2 | 248 | 498 | 751 | 4.18e-88 | 277 |
| MsG0780037642.01.T01 | AT3G45130 | 53.333 | 255 | 110 | 2 | 2 | 248 | 498 | 751 | 4.18e-88 | 277 |
| MsG0780037642.01.T01 | AT4G15370 | 52.157 | 255 | 106 | 3 | 2 | 248 | 505 | 751 | 5.48e-87 | 274 |
| MsG0780037642.01.T01 | AT4G15370 | 52.157 | 255 | 106 | 3 | 2 | 248 | 508 | 754 | 5.51e-87 | 274 |
| MsG0780037642.01.T01 | AT1G78955 | 62.209 | 172 | 57 | 1 | 1 | 164 | 435 | 606 | 3.89e-73 | 234 |
Find 50 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTCTTGCAGGGTAAAA+AGG | 0.192507 | 7:+29947428 | MsG0780037642.01.T01:intron |
| TGGGGAATTTGCTTCATTTA+TGG | 0.192754 | 7:+29947799 | MsG0780037642.01.T01:CDS |
| ATAACTAAAGCTTGAATTGC+TGG | 0.340316 | 7:-29947664 | None:intergenic |
| GCCAATCACCCTCTTCCAAC+TGG | 0.347244 | 7:-29948548 | None:intergenic |
| TTTGTACAACATTTGATTGT+TGG | 0.359225 | 7:-29948090 | None:intergenic |
| TGGTTCATGGTATGGAAGTT+GGG | 0.361550 | 7:+29947780 | MsG0780037642.01.T01:CDS |
| ATCTCTTTCTTCCTATGCTC+TGG | 0.363167 | 7:-29947703 | None:intergenic |
| CCCAGTTGGAAGAGGGTGAT+TGG | 0.374695 | 7:+29948547 | MsG0780037642.01.T01:CDS |
| TTAATTAACATGAACCTGTT+GGG | 0.387219 | 7:-29948571 | None:intergenic |
| ACAAAGAGAGGATGGTGGTT+GGG | 0.397928 | 7:+29947915 | MsG0780037642.01.T01:CDS |
| ATGGTTCATGGTATGGAAGT+TGG | 0.403489 | 7:+29947779 | MsG0780037642.01.T01:CDS |
| CTCATGAGTTTAATTTATGC+TGG | 0.439245 | 7:+29948124 | MsG0780037642.01.T01:CDS |
| CTTGGTGGTTTAGCAGCTGC+TGG | 0.449094 | 7:+29947835 | MsG0780037642.01.T01:CDS |
| GTTACGAATAGCAACAGAAT+TGG | 0.459020 | 7:-29947869 | None:intergenic |
| CAAAGAGAGGATGGTGGTTG+GGG | 0.465183 | 7:+29947916 | MsG0780037642.01.T01:CDS |
| AGAGATTGTGGGTGAAAAGA+TGG | 0.466261 | 7:+29947224 | MsG0780037642.01.T01:CDS |
| AAAGATGATGGTTCATGGTA+TGG | 0.471672 | 7:+29947772 | MsG0780037642.01.T01:CDS |
| GAGTTTAATTTATGCTGGCC+AGG | 0.472869 | 7:+29948129 | MsG0780037642.01.T01:CDS |
| TATGTTCCATTGTCTTCCAC+TGG | 0.474824 | 7:+29949316 | MsG0780037642.01.T01:CDS |
| AGAGGGTGATTGGCCCCAAC+AGG | 0.478137 | 7:+29948557 | MsG0780037642.01.T01:CDS |
| AACCATTCTTGAGCTCGTGC+CGG | 0.492075 | 7:-29947471 | None:intergenic |
| TGGTATGTCATCATGGGAAC+CGG | 0.492898 | 7:+29947452 | MsG0780037642.01.T01:CDS |
| TATTTATTGTAGGGAATCAC+AGG | 0.496137 | 7:+29949211 | MsG0780037642.01.T01:intron |
| AAAAGGGTGGTATGTCATCA+TGG | 0.498902 | 7:+29947445 | MsG0780037642.01.T01:CDS |
| CATCAATTCCCAGTTGGAAG+AGG | 0.502190 | 7:+29948539 | MsG0780037642.01.T01:CDS |
| ACTGAATCATATAACCTCTC+TGG | 0.509938 | 7:-29947249 | None:intergenic |
| ACTCAGCTAAAGCCCACAAT+GGG | 0.529293 | 7:-29949285 | None:intergenic |
| CAAATGTTGTACAAACTGCA+TGG | 0.533252 | 7:+29948098 | MsG0780037642.01.T01:CDS |
| CACAAAGAGAGGATGGTGGT+TGG | 0.535338 | 7:+29947914 | MsG0780037642.01.T01:CDS |
| AAATGTTGTACAAACTGCAT+GGG | 0.536757 | 7:+29948099 | MsG0780037642.01.T01:CDS |
| TATGAGTATGTTGAGTGCAC+TGG | 0.545103 | 7:+29947640 | MsG0780037642.01.T01:CDS |
| AACCGGCACGAGCTCAAGAA+TGG | 0.546012 | 7:+29947469 | MsG0780037642.01.T01:CDS |
| CCAATCACCCTCTTCCAACT+GGG | 0.547783 | 7:-29948547 | None:intergenic |
| CAGCACGATGAAGAGGAGTA+AGG | 0.552188 | 7:-29948506 | None:intergenic |
| TAATTAACATGAACCTGTTG+GGG | 0.559218 | 7:-29948570 | None:intergenic |
| AAAGGGTGGTATGTCATCAT+GGG | 0.560835 | 7:+29947446 | MsG0780037642.01.T01:CDS |
| ATTTCTCATCAATTCCCAGT+TGG | 0.563375 | 7:+29948533 | MsG0780037642.01.T01:CDS |
| GGTTCATGGTATGGAAGTTG+GGG | 0.567893 | 7:+29947781 | MsG0780037642.01.T01:CDS |
| GATTGTTGGCTTTCTTCAAG+AGG | 0.581272 | 7:-29948076 | None:intergenic |
| TCTTCTCACAACACAAAGAG+AGG | 0.584977 | 7:+29947903 | MsG0780037642.01.T01:CDS |
| ATCAATTCCCAGTTGGAAGA+GGG | 0.587110 | 7:+29948540 | MsG0780037642.01.T01:CDS |
| CTCACAACACAAAGAGAGGA+TGG | 0.591101 | 7:+29947907 | MsG0780037642.01.T01:CDS |
| AATGTTGCCTCCAGAGATTG+TGG | 0.602295 | 7:+29947212 | None:intergenic |
| TACTCAGCTAAAGCCCACAA+TGG | 0.603816 | 7:-29949286 | None:intergenic |
| ATAAGCTATATCCAGAGCAT+AGG | 0.604185 | 7:+29947692 | MsG0780037642.01.T01:CDS |
| ATGTTGCCTCCAGAGATTGT+GGG | 0.635342 | 7:+29947213 | MsG0780037642.01.T01:CDS |
| TTAACTCCAGTGGAAGACAA+TGG | 0.647779 | 7:-29949322 | None:intergenic |
| AATGTTGTACAAACTGCATG+GGG | 0.691397 | 7:+29948100 | MsG0780037642.01.T01:CDS |
| GTGAAAAGATGGAACCAGAG+AGG | 0.736171 | 7:+29947235 | MsG0780037642.01.T01:CDS |
| ACAACACAAAGAGAGGATGG+TGG | 0.742113 | 7:+29947910 | MsG0780037642.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATCAATGAAAAATAT+AGG | - | Chr7:29947323-29947342 | None:intergenic | 10.0% |
| !! | ATAATCAAATAAAAAAACAA+AGG | + | Chr7:29948704-29948723 | MsG0780037642.01.T01:intron | 10.0% |
| !! | TAATCAAATAAAAAAACAAA+GGG | + | Chr7:29948705-29948724 | MsG0780037642.01.T01:intron | 10.0% |
| !! | TACTTAAATATTAAATAACA+AGG | + | Chr7:29948594-29948613 | MsG0780037642.01.T01:intron | 10.0% |
| !!! | CATTTTAATTATATTTTTCT+TGG | - | Chr7:29949105-29949124 | None:intergenic | 10.0% |
| !! | ACAAAATTGTGAATATTTAT+AGG | - | Chr7:29948749-29948768 | None:intergenic | 15.0% |
| !! | CAAAATTGTGAATATTTATA+GGG | - | Chr7:29948748-29948767 | None:intergenic | 15.0% |
| !!! | AATTTTGTCTTATTTATTGT+AGG | + | Chr7:29949201-29949220 | MsG0780037642.01.T01:intron | 15.0% |
| !!! | ATTTTGTCTTATTTATTGTA+GGG | + | Chr7:29949202-29949221 | MsG0780037642.01.T01:intron | 15.0% |
| !! | AATACCGAAATTGATTATAT+AGG | + | Chr7:29948639-29948658 | MsG0780037642.01.T01:intron | 20.0% |
| !! | ACAAAACTGTGAATATTTAT+AGG | + | Chr7:29948966-29948985 | MsG0780037642.01.T01:intron | 20.0% |
| !! | CAAAACTGTGAATATTTATA+GGG | + | Chr7:29948967-29948986 | MsG0780037642.01.T01:intron | 20.0% |
| !! | GAATGAAAGAAAAAAGTAAA+TGG | - | Chr7:29947415-29947434 | None:intergenic | 20.0% |
| !! | TCTTTCTAATTCTTGTATAT+AGG | + | Chr7:29948473-29948492 | MsG0780037642.01.T01:intron | 20.0% |
| !! | TTAAGATTCATTTGCATTTA+TGG | - | Chr7:29948436-29948455 | None:intergenic | 20.0% |
| !!! | AAAGTGTGATTTTATTTTGT+AGG | + | Chr7:29948935-29948954 | MsG0780037642.01.T01:intron | 20.0% |
| !!! | AAAGTGTGATTTTATTTTGT+AGG | - | Chr7:29948954-29948935 | None:intergenic | 20.0% |
| !!! | AAGTGTGATTTTATTTTGTA+GGG | + | Chr7:29948936-29948955 | MsG0780037642.01.T01:intron | 20.0% |
| !!! | AAGTGTGATTTTATTTTGTA+GGG | - | Chr7:29948955-29948936 | None:intergenic | 20.0% |
| !!! | ACTGATGGAAAAATTTTATA+GGG | + | Chr7:29948876-29948895 | MsG0780037642.01.T01:intron | 20.0% |
| !!! | AGGTCAAAATACTTTTTTTT+AGG | + | Chr7:29948171-29948190 | MsG0780037642.01.T01:intron | 20.0% |
| !!! | ATGCTAATGGAAAATTTTAT+AGG | + | Chr7:29948843-29948862 | MsG0780037642.01.T01:intron | 20.0% |
| !!! | GGTCAAAATACTTTTTTTTA+GGG | + | Chr7:29948172-29948191 | MsG0780037642.01.T01:intron | 20.0% |
| !!! | TAACTTTGTTATTTATTTGC+AGG | + | Chr7:29947576-29947595 | MsG0780037642.01.T01:intron | 20.0% |
| !!! | TACTGATGGAAAAATTTTAT+AGG | + | Chr7:29948875-29948894 | MsG0780037642.01.T01:intron | 20.0% |
| !!! | TGCTAATGGAAAATTTTATA+GGG | + | Chr7:29948844-29948863 | MsG0780037642.01.T01:intron | 20.0% |
| !!! | TTTTGTCTTGTAAATATAAG+AGG | + | Chr7:29948248-29948267 | MsG0780037642.01.T01:intron | 20.0% |
| ! | AAAATTGAGTTTCGATTTCA+TGG | - | Chr7:29949148-29949167 | None:intergenic | 25.0% |
| ! | ATGCAAATGAATCTTAACAT+TGG | + | Chr7:29948439-29948458 | MsG0780037642.01.T01:intron | 25.0% |
| ! | ATTAATTAACATGAACCTGT+TGG | - | Chr7:29948575-29948594 | None:intergenic | 25.0% |
| ! | ATTTGATTATACAATGCTAC+TGG | - | Chr7:29948694-29948713 | None:intergenic | 25.0% |
| ! | CCTTCCTATATAATCAATTT+CGG | - | Chr7:29948646-29948665 | None:intergenic | 25.0% |
| ! | TAAATTAATCACTACACAAG+TGG | - | Chr7:29949048-29949067 | None:intergenic | 25.0% |
| ! | TACAATTTCTGCGAAAAATT+CGG | - | Chr7:29947614-29947633 | None:intergenic | 25.0% |
| ! | TGCATTTATGGTAATAATTG+TGG | - | Chr7:29948424-29948443 | None:intergenic | 25.0% |
| ! | TTAATTAACATGAACCTGTT+GGG | - | Chr7:29948574-29948593 | None:intergenic | 25.0% |
| ! | TTTGTACAACATTTGATTGT+TGG | - | Chr7:29948093-29948112 | None:intergenic | 25.0% |
| !! | ACATTTTCCTTAAGCATTTT+AGG | + | Chr7:29948812-29948831 | MsG0780037642.01.T01:intron | 25.0% |
| !! | ATGCTGATGGAAAATTTTAT+AGG | + | Chr7:29948906-29948925 | MsG0780037642.01.T01:intron | 25.0% |
| !! | CATTTTCCTTAAGCATTTTA+GGG | + | Chr7:29948813-29948832 | MsG0780037642.01.T01:intron | 25.0% |
| !! | TGCTGATGGAAAATTTTATA+GGG | + | Chr7:29948907-29948926 | MsG0780037642.01.T01:intron | 25.0% |
| !!! | AACTCAATATGAACCTTTTT+TGG | - | Chr7:29947961-29947980 | None:intergenic | 25.0% |
| !!! | AATACTTTTTTTTAGGGTCT+TGG | + | Chr7:29948178-29948197 | MsG0780037642.01.T01:intron | 25.0% |
| !!! | ACTCAATATGAACCTTTTTT+GGG | - | Chr7:29947960-29947979 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTTCATTCTTGCA+GGG | + | Chr7:29947420-29947439 | MsG0780037642.01.T01:intron | 25.0% |
| AAATGTTGTACAAACTGCAT+GGG | + | Chr7:29948099-29948118 | MsG0780037642.01.T01:CDS | 30.0% | |
| AACCCAAAAACAAAACATTG+TGG | + | Chr7:29949005-29949024 | MsG0780037642.01.T01:intron | 30.0% | |
| ACCCAAAAACAAAACATTGT+GGG | + | Chr7:29949006-29949025 | MsG0780037642.01.T01:intron | 30.0% | |
| ATAACTAAAGCTTGAATTGC+TGG | - | Chr7:29947667-29947686 | None:intergenic | 30.0% | |
| ATAGGGACTAAAAATACTGA+TGG | + | Chr7:29948861-29948880 | MsG0780037642.01.T01:intron | 30.0% | |
| ATTGAATAGTAGAACTTTCC+TGG | - | Chr7:29947293-29947312 | None:intergenic | 30.0% | |
| ATTGTGAGCTAAGCATAAAT+AGG | - | Chr7:29948622-29948641 | None:intergenic | 30.0% | |
| CCGAAATTGATTATATAGGA+AGG | + | Chr7:29948643-29948662 | MsG0780037642.01.T01:intron | 30.0% | |
| GAAGATACACAAAAAGATGA+TGG | + | Chr7:29947760-29947779 | MsG0780037642.01.T01:CDS | 30.0% | |
| GTATGCTCTTCATGAATTAA+AGG | + | Chr7:29948151-29948170 | MsG0780037642.01.T01:intron | 30.0% | |
| TAATTAACATGAACCTGTTG+GGG | - | Chr7:29948573-29948592 | None:intergenic | 30.0% | |
| TATTTATTGTAGGGAATCAC+AGG | + | Chr7:29949211-29949230 | MsG0780037642.01.T01:intron | 30.0% | |
| TTAGGGACTAAAAATGCTAA+TGG | + | Chr7:29948830-29948849 | MsG0780037642.01.T01:intron | 30.0% | |
| TTTAGTCCCTAAAATGCTTA+AGG | - | Chr7:29948822-29948841 | None:intergenic | 30.0% | |
| ! | AACTGTTTCTCACTCAAATT+AGG | + | Chr7:29948394-29948413 | MsG0780037642.01.T01:intron | 30.0% |
| ! | ATAGAGATATTTTCCCATTG+TGG | + | Chr7:29949272-29949291 | MsG0780037642.01.T01:CDS | 30.0% |
| ! | CATCTTTTTGTGTATCTTCA+AGG | - | Chr7:29947759-29947778 | None:intergenic | 30.0% |
| ! | CTCATGAGTTTAATTTATGC+TGG | + | Chr7:29948124-29948143 | MsG0780037642.01.T01:CDS | 30.0% |
| ! | TAGAGATATTTTCCCATTGT+GGG | + | Chr7:29949273-29949292 | MsG0780037642.01.T01:CDS | 30.0% |
| !!! | AACCCACAATGTTTTGTTTT+TGG | - | Chr7:29949011-29949030 | None:intergenic | 30.0% |
| !!! | ACCCACAATGTTTTGTTTTT+GGG | - | Chr7:29949010-29949029 | None:intergenic | 30.0% |
| !!! | CTTTTTTCTTTCATTCTTGC+AGG | + | Chr7:29947419-29947438 | MsG0780037642.01.T01:intron | 30.0% |
| !!! | TATGGTACTTATTTTGCTCT+TGG | + | Chr7:29947817-29947836 | MsG0780037642.01.T01:CDS | 30.0% |
| !!! | TTTTTCAAGTTTAACTCCAG+TGG | - | Chr7:29949335-29949354 | None:intergenic | 30.0% |
| AATGTTGTACAAACTGCATG+GGG | + | Chr7:29948100-29948119 | MsG0780037642.01.T01:CDS | 35.0% | |
| AATTTCTGCGAAAAATTCGG+TGG | - | Chr7:29947611-29947630 | None:intergenic | 35.0% | |
| ACTGAATCATATAACCTCTC+TGG | - | Chr7:29947252-29947271 | None:intergenic | 35.0% | |
| ACTTTGTCAAGACACTCTAA+TGG | + | Chr7:29949076-29949095 | MsG0780037642.01.T01:intron | 35.0% | |
| ATAAGCTATATCCAGAGCAT+AGG | + | Chr7:29947692-29947711 | MsG0780037642.01.T01:CDS | 35.0% | |
| ATAGGGACTAAAAATGCTGA+TGG | + | Chr7:29948893-29948912 | MsG0780037642.01.T01:intron | 35.0% | |
| ATGCTTAAGGAAAATGTCAC+AGG | - | Chr7:29948809-29948828 | None:intergenic | 35.0% | |
| ATTTCTCATCAATTCCCAGT+TGG | + | Chr7:29948533-29948552 | MsG0780037642.01.T01:CDS | 35.0% | |
| ATTTCTGCGAAAAATTCGGT+GGG | - | Chr7:29947610-29947629 | None:intergenic | 35.0% | |
| CAAATGTTGTACAAACTGCA+TGG | + | Chr7:29948098-29948117 | MsG0780037642.01.T01:CDS | 35.0% | |
| CTATCTTTCATGCCCAAAAA+AGG | + | Chr7:29947945-29947964 | MsG0780037642.01.T01:CDS | 35.0% | |
| CTCAAGAATGGTTAGAAGTA+AGG | + | Chr7:29947481-29947500 | MsG0780037642.01.T01:intron | 35.0% | |
| CTTTGTCAAGACACTCTAAT+GGG | + | Chr7:29949077-29949096 | MsG0780037642.01.T01:intron | 35.0% | |
| GTGTCTTGACAAAGTTAAGA+TGG | - | Chr7:29949071-29949090 | None:intergenic | 35.0% | |
| GTTACGAATAGCAACAGAAT+TGG | - | Chr7:29947872-29947891 | None:intergenic | 35.0% | |
| TCATTCTTGCAGGGTAAAAA+GGG | + | Chr7:29947429-29947448 | MsG0780037642.01.T01:intron | 35.0% | |
| TGCTTAAGGAAAATGTCACA+GGG | - | Chr7:29948808-29948827 | None:intergenic | 35.0% | |
| TTCATTCTTGCAGGGTAAAA+AGG | + | Chr7:29947428-29947447 | MsG0780037642.01.T01:intron | 35.0% | |
| TTTGTCAAGACACTCTAATG+GGG | + | Chr7:29949078-29949097 | MsG0780037642.01.T01:intron | 35.0% | |
| ! | AAAGATGATGGTTCATGGTA+TGG | + | Chr7:29947772-29947791 | MsG0780037642.01.T01:CDS | 35.0% |
| ! | CACAAAAAGATGATGGTTCA+TGG | + | Chr7:29947767-29947786 | MsG0780037642.01.T01:CDS | 35.0% |
| ! | TAATTCATGAAGAGCATACC+TGG | - | Chr7:29948150-29948169 | None:intergenic | 35.0% |
| ! | TGGGGAATTTGCTTCATTTA+TGG | + | Chr7:29947799-29947818 | MsG0780037642.01.T01:CDS | 35.0% |
| AAAAGGGTGGTATGTCATCA+TGG | + | Chr7:29947445-29947464 | MsG0780037642.01.T01:CDS | 40.0% | |
| AAAGGGTGGTATGTCATCAT+GGG | + | Chr7:29947446-29947465 | MsG0780037642.01.T01:CDS | 40.0% | |
| AACTAATACCCTGAAGACAC+TGG | - | Chr7:29948208-29948227 | None:intergenic | 40.0% | |
| AATAATAACCAGTGCCCCAA+GGG | - | Chr7:29948341-29948360 | None:intergenic | 40.0% | |
| AGAGATTGTGGGTGAAAAGA+TGG | + | Chr7:29947224-29947243 | MsG0780037642.01.T01:CDS | 40.0% | |
| AGTTGTGTGCAGAGGATATT+TGG | - | Chr7:29948378-29948397 | None:intergenic | 40.0% | |
| ATCAATTCCCAGTTGGAAGA+GGG | + | Chr7:29948540-29948559 | MsG0780037642.01.T01:CDS | 40.0% | |
| ATCTCTTTCTTCCTATGCTC+TGG | - | Chr7:29947706-29947725 | None:intergenic | 40.0% | |
| ATGGTTCATGGTATGGAAGT+TGG | + | Chr7:29947779-29947798 | MsG0780037642.01.T01:CDS | 40.0% | |
| TATGAGTATGTTGAGTGCAC+TGG | + | Chr7:29947640-29947659 | MsG0780037642.01.T01:CDS | 40.0% | |
| TATGTTCCATTGTCTTCCAC+TGG | + | Chr7:29949316-29949335 | MsG0780037642.01.T01:CDS | 40.0% | |
| TCTTCTCACAACACAAAGAG+AGG | + | Chr7:29947903-29947922 | MsG0780037642.01.T01:CDS | 40.0% | |
| TGGTTCATGGTATGGAAGTT+GGG | + | Chr7:29947780-29947799 | MsG0780037642.01.T01:CDS | 40.0% | |
| TTAACTCCAGTGGAAGACAA+TGG | - | Chr7:29949325-29949344 | None:intergenic | 40.0% | |
| ! | AATTTTGCAGCACGATGAAG+AGG | - | Chr7:29948516-29948535 | None:intergenic | 40.0% |
| ! | ATCTTTTCACCCACAATCTC+TGG | - | Chr7:29947225-29947244 | None:intergenic | 40.0% |
| ! | GAGTTTAATTTATGCTGGCC+AGG | + | Chr7:29948129-29948148 | MsG0780037642.01.T01:CDS | 40.0% |
| !! | GATTGTTGGCTTTCTTCAAG+AGG | - | Chr7:29948079-29948098 | None:intergenic | 40.0% |
| !!! | GGTACTTATTTTGCTCTTGG+TGG | + | Chr7:29947820-29947839 | MsG0780037642.01.T01:CDS | 40.0% |
| ACAACACAAAGAGAGGATGG+TGG | + | Chr7:29947910-29947929 | MsG0780037642.01.T01:CDS | 45.0% | |
| ACTCAGCTAAAGCCCACAAT+GGG | - | Chr7:29949288-29949307 | None:intergenic | 45.0% | |
| ATGTTGCCTCCAGAGATTGT+GGG | + | Chr7:29947213-29947232 | MsG0780037642.01.T01:CDS | 45.0% | |
| CATCAATTCCCAGTTGGAAG+AGG | + | Chr7:29948539-29948558 | MsG0780037642.01.T01:CDS | 45.0% | |
| CTCACAACACAAAGAGAGGA+TGG | + | Chr7:29947907-29947926 | MsG0780037642.01.T01:CDS | 45.0% | |
| GAATAATAACCAGTGCCCCA+AGG | - | Chr7:29948342-29948361 | None:intergenic | 45.0% | |
| GGTTCATGGTATGGAAGTTG+GGG | + | Chr7:29947781-29947800 | MsG0780037642.01.T01:CDS | 45.0% | |
| GTGAAAAGATGGAACCAGAG+AGG | + | Chr7:29947235-29947254 | MsG0780037642.01.T01:CDS | 45.0% | |
| TACTCAGCTAAAGCCCACAA+TGG | - | Chr7:29949289-29949308 | None:intergenic | 45.0% | |
| TGAGAAACAGTTGTGTGCAG+AGG | - | Chr7:29948386-29948405 | None:intergenic | 45.0% | |
| TGGTATGTCATCATGGGAAC+CGG | + | Chr7:29947452-29947471 | MsG0780037642.01.T01:CDS | 45.0% | |
| TTCTTGCAGGGTAAAAAGGG+TGG | + | Chr7:29947432-29947451 | MsG0780037642.01.T01:intron | 45.0% | |
| TTGGCTAACCAGTGTCTTCA+GGG | + | Chr7:29948197-29948216 | MsG0780037642.01.T01:intron | 45.0% | |
| ! | ACAAAGAGAGGATGGTGGTT+GGG | + | Chr7:29947915-29947934 | MsG0780037642.01.T01:CDS | 45.0% |
| ! | TTTTCACCCACAATCTCTGG+AGG | - | Chr7:29947222-29947241 | None:intergenic | 45.0% |
| !! | ACAAAATTAAAATTAATAAT+AGG | - | Chr7:29949189-29949208 | None:intergenic | 5.0% |
| AACCATTCTTGAGCTCGTGC+CGG | - | Chr7:29947474-29947493 | None:intergenic | 50.0% | |
| AACTTTCCTGGAGCGACAAC+AGG | - | Chr7:29947281-29947300 | None:intergenic | 50.0% | |
| AGATGCTTAACCATCGCCCT+TGG | + | Chr7:29948322-29948341 | MsG0780037642.01.T01:intron | 50.0% | |
| ATGCTTAACCATCGCCCTTG+GGG | + | Chr7:29948324-29948343 | MsG0780037642.01.T01:intron | 50.0% | |
| CAGCACGATGAAGAGGAGTA+AGG | - | Chr7:29948509-29948528 | None:intergenic | 50.0% | |
| CCAATCACCCTCTTCCAACT+GGG | - | Chr7:29948550-29948569 | None:intergenic | 50.0% | |
| CTTGGCTAACCAGTGTCTTC+AGG | + | Chr7:29948196-29948215 | MsG0780037642.01.T01:intron | 50.0% | |
| GATGCTTAACCATCGCCCTT+GGG | + | Chr7:29948323-29948342 | MsG0780037642.01.T01:intron | 50.0% | |
| ! | CAAAGAGAGGATGGTGGTTG+GGG | + | Chr7:29947916-29947935 | MsG0780037642.01.T01:CDS | 50.0% |
| ! | CACAAAGAGAGGATGGTGGT+TGG | + | Chr7:29947914-29947933 | MsG0780037642.01.T01:CDS | 50.0% |
| AACCGGCACGAGCTCAAGAA+TGG | + | Chr7:29947469-29947488 | MsG0780037642.01.T01:CDS | 55.0% | |
| CAATCTCCTGTTGTCGCTCC+AGG | + | Chr7:29947272-29947291 | MsG0780037642.01.T01:intron | 55.0% | |
| CCCAGTTGGAAGAGGGTGAT+TGG | + | Chr7:29948547-29948566 | MsG0780037642.01.T01:CDS | 55.0% | |
| GCCAATCACCCTCTTCCAAC+TGG | - | Chr7:29948551-29948570 | None:intergenic | 55.0% | |
| ! | CTTGGTGGTTTAGCAGCTGC+TGG | + | Chr7:29947835-29947854 | MsG0780037642.01.T01:CDS | 55.0% |
| ! | AGAGGGTGATTGGCCCCAAC+AGG | + | Chr7:29948557-29948576 | MsG0780037642.01.T01:CDS | 60.0% |
| AACCAGTGCCCCAAGGGCGA+TGG | - | Chr7:29948335-29948354 | None:intergenic | 65.0% | |
| AACCATCGCCCTTGGGGCAC+TGG | + | Chr7:29948330-29948349 | MsG0780037642.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 29947213 | 29949363 | 29947213 | ID=MsG0780037642.01;Name=MsG0780037642.01 |
| Chr7 | mRNA | 29947213 | 29949363 | 29947213 | ID=MsG0780037642.01.T01;Parent=MsG0780037642.01;Name=MsG0780037642.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.2|0.16|1|0.4|0.66|6|0|263 |
| Chr7 | exon | 29947213 | 29947269 | 29947213 | ID=MsG0780037642.01.T01:exon:7061;Parent=MsG0780037642.01.T01 |
| Chr7 | exon | 29947441 | 29947497 | 29947441 | ID=MsG0780037642.01.T01:exon:7062;Parent=MsG0780037642.01.T01 |
| Chr7 | exon | 29947598 | 29947966 | 29947598 | ID=MsG0780037642.01.T01:exon:7063;Parent=MsG0780037642.01.T01 |
| Chr7 | exon | 29948067 | 29948150 | 29948067 | ID=MsG0780037642.01.T01:exon:7064;Parent=MsG0780037642.01.T01 |
| Chr7 | exon | 29948495 | 29948578 | 29948495 | ID=MsG0780037642.01.T01:exon:7065;Parent=MsG0780037642.01.T01 |
| Chr7 | exon | 29949223 | 29949363 | 29949223 | ID=MsG0780037642.01.T01:exon:7066;Parent=MsG0780037642.01.T01 |
| Chr7 | CDS | 29947213 | 29947269 | 29947213 | ID=MsG0780037642.01.T01:cds;Parent=MsG0780037642.01.T01 |
| Chr7 | CDS | 29947441 | 29947497 | 29947441 | ID=MsG0780037642.01.T01:cds;Parent=MsG0780037642.01.T01 |
| Chr7 | CDS | 29947598 | 29947966 | 29947598 | ID=MsG0780037642.01.T01:cds;Parent=MsG0780037642.01.T01 |
| Chr7 | CDS | 29948067 | 29948150 | 29948067 | ID=MsG0780037642.01.T01:cds;Parent=MsG0780037642.01.T01 |
| Chr7 | CDS | 29948495 | 29948578 | 29948495 | ID=MsG0780037642.01.T01:cds;Parent=MsG0780037642.01.T01 |
| Chr7 | CDS | 29949223 | 29949363 | 29949223 | ID=MsG0780037642.01.T01:cds;Parent=MsG0780037642.01.T01 |
| Gene Sequence |
| Protein sequence |
