AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780037727.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037727.01.T01 MTR_5g071550 66.514 218 14 2 1 169 136 343 1.76e-94 281
MsG0780037727.01.T01 MTR_5g071550 73.298 191 2 1 1 142 136 326 5.43e-93 277
MsG0780037727.01.T01 MTR_3g464650 55.721 201 40 1 1 152 76 276 2.06e-73 226
MsG0780037727.01.T01 MTR_3g464700 55.670 194 37 1 1 145 100 293 8.94e-72 222
MsG0780037727.01.T01 MTR_5g071550 98.765 81 1 0 1 81 136 216 9.08e-53 172
MsG0780037727.01.T01 MTR_1g014640 30.734 218 95 4 1 165 90 304 7.87e-24 97.8
MsG0780037727.01.T01 MTR_1g013400 30.734 218 95 4 1 165 90 304 7.87e-24 97.8
MsG0780037727.01.T01 MTR_1g115570 30.085 236 96 9 1 181 108 329 1.10e-19 86.3
MsG0780037727.01.T01 MTR_3g091060 28.351 194 89 2 1 144 107 300 3.07e-16 77.0
MsG0780037727.01.T01 MTR_3g105730 42.353 85 48 1 81 165 178 261 1.11e-14 72.0
MsG0780037727.01.T01 MTR_3g105730 42.353 85 48 1 81 165 156 239 1.50e-14 71.2
MsG0780037727.01.T01 MTR_4g125810 44.156 77 40 2 80 154 376 451 2.29e-12 66.2
MsG0780037727.01.T01 MTR_2g040500 47.692 65 32 1 92 154 422 486 1.46e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037727.01.T01 AT1G07160 45.662 219 56 4 1 156 135 353 5.49e-56 183
MsG0780037727.01.T01 AT2G30020 50.000 196 47 3 1 145 152 347 1.73e-55 182
MsG0780037727.01.T01 AT2G40180 46.262 214 53 6 1 157 141 349 3.21e-49 166
MsG0780037727.01.T01 AT2G05050 48.125 160 73 4 1 157 1 153 2.05e-40 137
MsG0780037727.01.T01 AT4G08260 41.584 202 61 6 1 166 1 181 2.02e-38 133
MsG0780037727.01.T01 AT1G67820 39.796 196 66 3 1 145 97 291 1.70e-37 135
MsG0780037727.01.T01 AT1G67820 39.796 196 66 3 1 145 133 327 3.09e-37 135
MsG0780037727.01.T01 AT3G27140 43.275 171 82 4 1 166 1 161 1.09e-33 121
MsG0780037727.01.T01 AT4G31750 30.594 219 96 4 1 166 46 261 2.24e-22 93.2
MsG0780037727.01.T01 AT4G31750 30.594 219 96 4 1 166 46 261 2.29e-22 93.2
MsG0780037727.01.T01 AT4G31750 30.594 219 96 4 1 166 46 261 2.29e-22 93.2
MsG0780037727.01.T01 AT5G24940 32.044 181 67 4 17 144 62 239 1.83e-19 86.7
MsG0780037727.01.T01 AT5G53140 29.897 194 86 2 1 144 114 307 4.50e-17 79.7
MsG0780037727.01.T01 AT5G53140 29.897 194 86 2 1 144 114 307 4.50e-17 79.7
MsG0780037727.01.T01 AT5G10740 53.125 64 29 1 81 144 177 239 1.18e-13 69.7
MsG0780037727.01.T01 AT5G10740 53.125 64 29 1 81 144 177 239 1.18e-13 69.7

Find 38 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTAGCTTCAGATGGATTA+TGG 0.192944 7:+32232214 MsG0780037727.01.T01:CDS
TCTTCGTGGTGAAAACAATT+TGG 0.251614 7:+32231147 MsG0780037727.01.T01:CDS
TTGATTTATGTCGCGGTGTT+TGG 0.326760 7:+32232073 MsG0780037727.01.T01:CDS
AATATTAACAAGTCATGTTC+AGG 0.369231 7:-32232195 None:intergenic
AAAGATTGCTTATAGACGTT+TGG 0.369471 7:+32233641 MsG0780037727.01.T01:CDS
ATTAGCTTCAGATGGATTAT+GGG 0.376455 7:+32232215 MsG0780037727.01.T01:CDS
CGCGGTGTTTGGAGGATTCA+AGG 0.409122 7:+32232084 MsG0780037727.01.T01:CDS
ATTCTAATAACTTTAGTCTC+AGG 0.420683 7:-32232168 None:intergenic
GTTTGTTGCAGATATCTGAT+AGG 0.423253 7:+32233177 MsG0780037727.01.T01:intron
TGCAAAAGCCGCTGAATTTG+CGG 0.437022 7:+32231650 MsG0780037727.01.T01:CDS
ATATAGTAAGATGTTTCAAT+AGG 0.451276 7:+32233219 MsG0780037727.01.T01:CDS
ATTTATGTCGCGGTGTTTGG+AGG 0.459287 7:+32232076 MsG0780037727.01.T01:CDS
ATGGAAGATCGTTATACAGC+TGG 0.461700 7:+32231118 MsG0780037727.01.T01:CDS
TAACCTAGAAAAGAACATCT+TGG 0.492082 7:+32231677 MsG0780037727.01.T01:CDS
TTCAGATGGATTATGGGATA+AGG 0.496992 7:+32232221 MsG0780037727.01.T01:CDS
CTTGCTGTATCAAGAGGAAT+CGG 0.497083 7:+32232111 MsG0780037727.01.T01:CDS
TTTGGTGTATTTGATGGCCA+TGG 0.500054 7:+32231624 MsG0780037727.01.T01:CDS
GTATGGTGAAACAACAGAAC+TGG 0.503405 7:+32233593 MsG0780037727.01.T01:CDS
ACAGCTGGGGTTAATCTTCG+TGG 0.510384 7:+32231133 MsG0780037727.01.T01:CDS
TTGTTAATATTAGCTTCAGA+TGG 0.519141 7:+32232207 MsG0780037727.01.T01:CDS
AGATCGACACTTGAAACAAT+GGG 0.532064 7:+32232134 MsG0780037727.01.T01:CDS
TTGTAGGAAGACAATAGAGA+TGG 0.533190 7:+32233522 MsG0780037727.01.T01:intron
TGCAACATACATATACAAAA+CGG 0.534013 7:+32233373 MsG0780037727.01.T01:CDS
CAATAGAGATGGAAATTATG+TGG 0.535136 7:+32233533 MsG0780037727.01.T01:CDS
TGGAAGATCGTTATACAGCT+GGG 0.545761 7:+32231119 MsG0780037727.01.T01:CDS
TGAACTCAGAATCGGTATTG+AGG 0.547989 7:-32231755 None:intergenic
GAGATCGACACTTGAAACAA+TGG 0.569960 7:+32232133 MsG0780037727.01.T01:CDS
GGATCTCTTGCTGTATCAAG+AGG 0.589287 7:+32232105 MsG0780037727.01.T01:CDS
GAGTGATGAAGATGATGTTG+AGG 0.608161 7:+32231713 MsG0780037727.01.T01:CDS
GTTATTTGCCGCAAATTCAG+CGG 0.618722 7:-32231658 None:intergenic
TGATGAAGATGATGTTGAGG+AGG 0.640938 7:+32231716 MsG0780037727.01.T01:CDS
GGTTATGTTGATTTATGTCG+CGG 0.653499 7:+32232066 MsG0780037727.01.T01:CDS
GGTGTATTTGATGGCCATGG+AGG 0.663870 7:+32231627 MsG0780037727.01.T01:CDS
GGAAGATCGTTATACAGCTG+GGG 0.671830 7:+32231120 MsG0780037727.01.T01:CDS
GGTGAAACAACAGAACTGGA+AGG 0.677606 7:+32233597 MsG0780037727.01.T01:CDS
AGAAAAGAACATCTTGGACG+AGG 0.682239 7:+32231683 MsG0780037727.01.T01:CDS
GTTGAGGAGGCAGTGAAGCG+CGG 0.685913 7:+32231729 MsG0780037727.01.T01:CDS
GTTTCAATAGGATAGCACAA+AGG 0.719274 7:+32233231 MsG0780037727.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAATATATAATATTGATT+TGG + Chr7:32231171-32231190 MsG0780037727.01.T01:intron 10.0%
!! TTAGTCTCATAATTAATATA+TGG + Chr7:32233254-32233273 MsG0780037727.01.T01:intron 15.0%
!!! ATATATAATATTGATTTGGA+TGG + Chr7:32231175-32231194 MsG0780037727.01.T01:intron 15.0%
!!! TAAATACTTTTAGTAACAAT+GGG - Chr7:32233424-32233443 None:intergenic 15.0%
!!! TTATTATCAACATACTATTT+TGG + Chr7:32232800-32232819 MsG0780037727.01.T01:intron 15.0%
!! AAAAAGAAGAAGTTAATGTT+TGG + Chr7:32233463-32233482 MsG0780037727.01.T01:intron 20.0%
!! AAAAGAAGAAGTTAATGTTT+GGG + Chr7:32233464-32233483 MsG0780037727.01.T01:intron 20.0%
!! ATATAGTAAGATGTTTCAAT+AGG + Chr7:32233219-32233238 MsG0780037727.01.T01:CDS 20.0%
!!! CAAATGATGTAATCTAAAAT+TGG + Chr7:32232971-32232990 MsG0780037727.01.T01:intron 20.0%
!!! CAATTTTAGATTACATCATT+TGG - Chr7:32232973-32232992 None:intergenic 20.0%
!!! CTAAATACTTTTAGTAACAA+TGG - Chr7:32233425-32233444 None:intergenic 20.0%
!!! TTGATATGATTTTGTCAATT+GGG + Chr7:32231206-32231225 MsG0780037727.01.T01:intron 20.0%
! AAAAGTTTGTCTTAGTGATT+AGG + Chr7:32231419-32231438 MsG0780037727.01.T01:intron 25.0%
! AAAATTCATGCACTTGTATA+TGG + Chr7:32233009-32233028 MsG0780037727.01.T01:intron 25.0%
! AAATGGTAAGAAATTTACCA+GGG - Chr7:32231955-32231974 None:intergenic 25.0%
! AATATTAACAAGTCATGTTC+AGG - Chr7:32232198-32232217 None:intergenic 25.0%
! AGTATTTAGATGATGAGTAA+TGG + Chr7:32233436-32233455 MsG0780037727.01.T01:intron 25.0%
! ATTCTAATAACTTTAGTCTC+AGG - Chr7:32232171-32232190 None:intergenic 25.0%
! ATTGTTAACAAAAATGTACC+AGG + Chr7:32232697-32232716 MsG0780037727.01.T01:intron 25.0%
! CTCATAATTAATATATGGTC+AGG + Chr7:32233259-32233278 MsG0780037727.01.T01:intron 25.0%
! CTTTAAATAAATGAACTGAC+CGG - Chr7:32232549-32232568 None:intergenic 25.0%
! GATAATAACTAACCATCATT+TGG - Chr7:32232788-32232807 None:intergenic 25.0%
! GTCAGTTCATTTATTTAAAG+CGG + Chr7:32232549-32232568 MsG0780037727.01.T01:intron 25.0%
! TACATATACAAAACGGTAAA+AGG + Chr7:32233380-32233399 MsG0780037727.01.T01:intron 25.0%
! TATTAGTCATAACTAAGAGT+CGG + Chr7:32232882-32232901 MsG0780037727.01.T01:intron 25.0%
! TGCAACATACATATACAAAA+CGG + Chr7:32233373-32233392 MsG0780037727.01.T01:CDS 25.0%
! TTTCTTACCATTTGTGTATT+TGG + Chr7:32231962-32231981 MsG0780037727.01.T01:intron 25.0%
!! GTTGATATGATTTTGTCAAT+TGG + Chr7:32231205-32231224 MsG0780037727.01.T01:intron 25.0%
!! TTGTTAATATTAGCTTCAGA+TGG + Chr7:32232207-32232226 MsG0780037727.01.T01:CDS 25.0%
!!! GTTTATTTTGTGATAATTGC+AGG + Chr7:32231596-32231615 MsG0780037727.01.T01:intron 25.0%
!!! TTTGTTTTTTTCGTCTGATT+TGG + Chr7:32231304-32231323 MsG0780037727.01.T01:intron 25.0%
!!! TTTTTTCATGAACTCAGAAT+CGG - Chr7:32231766-32231785 None:intergenic 25.0%
AAAGATTGCTTATAGACGTT+TGG + Chr7:32233641-32233660 MsG0780037727.01.T01:CDS 30.0%
AACAAATTAAACTCCAGAGA+AGG - Chr7:32233155-32233174 None:intergenic 30.0%
AAGAGAACCAAATACACAAA+TGG - Chr7:32231972-32231991 None:intergenic 30.0%
ACATTGCAACAAGTGTTATA+AGG - Chr7:32233049-32233068 None:intergenic 30.0%
ACTTGATTTCTTAATTGCTC+TGG + Chr7:32231245-32231264 MsG0780037727.01.T01:intron 30.0%
ATACAAAACGGTAAAAGGTT+TGG + Chr7:32233385-32233404 MsG0780037727.01.T01:intron 30.0%
CAAATGGTAAGAAATTTACC+AGG - Chr7:32231956-32231975 None:intergenic 30.0%
CAATAGAGATGGAAATTATG+TGG + Chr7:32233533-32233552 MsG0780037727.01.T01:CDS 30.0%
CGTCACATTATATTGTTTCA+TGG - Chr7:32233298-32233317 None:intergenic 30.0%
GATCAACCTATATGTGTATT+TGG + Chr7:32232266-32232285 MsG0780037727.01.T01:intron 30.0%
GTAAACATTACCAACAACAA+GGG - Chr7:32232585-32232604 None:intergenic 30.0%
GTAACAACATTCATTAGGAA+TGG + Chr7:32231810-32231829 MsG0780037727.01.T01:intron 30.0%
GTTAATCGTTCGATATCAAA+AGG - Chr7:32232427-32232446 None:intergenic 30.0%
GTTGTGTAACAACATTCATT+AGG + Chr7:32231805-32231824 MsG0780037727.01.T01:intron 30.0%
TAACCTAGAAAAGAACATCT+TGG + Chr7:32231677-32231696 MsG0780037727.01.T01:CDS 30.0%
TACAAAACGGTAAAAGGTTT+GGG + Chr7:32233386-32233405 MsG0780037727.01.T01:intron 30.0%
TGTTTAGCTGGAATGAAAAA+AGG + Chr7:32233066-32233085 MsG0780037727.01.T01:intron 30.0%
TTCATGAAAAAAGATCTGCA+TGG + Chr7:32231774-32231793 MsG0780037727.01.T01:CDS 30.0%
! AAAGTCAATTTTAAGCTGCT+AGG + Chr7:32231369-32231388 MsG0780037727.01.T01:intron 30.0%
! GTGTAAAATCTAACTTGTAC+AGG + Chr7:32231574-32231593 MsG0780037727.01.T01:intron 30.0%
! GTTTTGTCTTCAATTGTGTA+TGG + Chr7:32233576-32233595 MsG0780037727.01.T01:CDS 30.0%
! TGTTTGGGTTTGTTTAAGTA+TGG + Chr7:32233479-32233498 MsG0780037727.01.T01:intron 30.0%
!! ATTAGCTTCAGATGGATTAT+GGG + Chr7:32232215-32232234 MsG0780037727.01.T01:CDS 30.0%
!! GAAAAGCTCCTTTTGTTTAA+CGG - Chr7:32232504-32232523 None:intergenic 30.0%
!! TATTAGCTTCAGATGGATTA+TGG + Chr7:32232214-32232233 MsG0780037727.01.T01:CDS 30.0%
!! TATTTTGGATCAAACCTTTG+TGG + Chr7:32232815-32232834 MsG0780037727.01.T01:intron 30.0%
!!! GCTTTTTTTGGTGTATTTGA+TGG + Chr7:32231618-32231637 MsG0780037727.01.T01:CDS 30.0%
!!! TGATAATTGCAGGCTTTTTT+TGG + Chr7:32231606-32231625 MsG0780037727.01.T01:intron 30.0%
AAAAATGTACCAGGCATACA+TGG + Chr7:32232706-32232725 MsG0780037727.01.T01:intron 35.0%
AAGAACCAAACTCAAACACA+AGG - Chr7:32232015-32232034 None:intergenic 35.0%
AAGCATTATGTATCCTTCTC+TGG + Chr7:32233139-32233158 MsG0780037727.01.T01:intron 35.0%
AGATCGACACTTGAAACAAT+GGG + Chr7:32232134-32232153 MsG0780037727.01.T01:CDS 35.0%
ATCGAACGATTAACTGATCA+AGG + Chr7:32232433-32232452 MsG0780037727.01.T01:intron 35.0%
ATGAAAAAAGATCTGCATGG+TGG + Chr7:32231777-32231796 MsG0780037727.01.T01:CDS 35.0%
ATGAAAAAAGGAACTAGCTG+CGG + Chr7:32233078-32233097 MsG0780037727.01.T01:intron 35.0%
ATGCTTGAAATTTGTCTTGC+AGG + Chr7:32232041-32232060 MsG0780037727.01.T01:intron 35.0%
CAAACGCCAAATACACATAT+AGG - Chr7:32232275-32232294 None:intergenic 35.0%
CCTATTAGATCTATTCCTGA+AGG + Chr7:32232604-32232623 MsG0780037727.01.T01:intron 35.0%
CCTTCAGGAATAGATCTAAT+AGG - Chr7:32232607-32232626 None:intergenic 35.0%
GCAACAAGTGTTATAAGGTT+CGG - Chr7:32233044-32233063 None:intergenic 35.0%
GGTAAACATTACCAACAACA+AGG - Chr7:32232586-32232605 None:intergenic 35.0%
GTGCTGTAATTGTATGTTGA+GGG + Chr7:32232626-32232645 MsG0780037727.01.T01:intron 35.0%
GTTTCAATAGGATAGCACAA+AGG + Chr7:32233231-32233250 MsG0780037727.01.T01:CDS 35.0%
TAAGTATGGTTGTGTGATGT+TGG + Chr7:32233493-32233512 MsG0780037727.01.T01:intron 35.0%
TAATGTGACGACATTACATG+AGG + Chr7:32233308-32233327 MsG0780037727.01.T01:intron 35.0%
TCTTCGTGGTGAAAACAATT+TGG + Chr7:32231147-32231166 MsG0780037727.01.T01:CDS 35.0%
TGCTTGAAATTTGTCTTGCA+GGG + Chr7:32232042-32232061 MsG0780037727.01.T01:intron 35.0%
TTGTAGGAAGACAATAGAGA+TGG + Chr7:32233522-32233541 MsG0780037727.01.T01:intron 35.0%
! AAGGTTCTTTTTCTCATTCC+AGG + Chr7:32232452-32232471 MsG0780037727.01.T01:intron 35.0%
! ACGGAAGTATATTACTAACC+TGG - Chr7:32232473-32232492 None:intergenic 35.0%
! GTTTGTTGCAGATATCTGAT+AGG + Chr7:32233177-32233196 MsG0780037727.01.T01:intron 35.0%
! TAAAAAGCTTCCCTTGTTGT+TGG + Chr7:32232572-32232591 MsG0780037727.01.T01:intron 35.0%
! TGAAACCTTGTGTTTGAGTT+TGG + Chr7:32232007-32232026 MsG0780037727.01.T01:intron 35.0%
!! CTTAATTGCTCTGGTCTTAT+TGG + Chr7:32231254-32231273 MsG0780037727.01.T01:intron 35.0%
!! GGTTATGTTGATTTATGTCG+CGG + Chr7:32232066-32232085 MsG0780037727.01.T01:CDS 35.0%
!! GTTATAAGGTTCGGTGTAAA+TGG - Chr7:32233035-32233054 None:intergenic 35.0%
!! TGCAGTTGAAAGCTTTAAGA+AGG + Chr7:32232748-32232767 MsG0780037727.01.T01:intron 35.0%
!! TTCAGATGGATTATGGGATA+AGG + Chr7:32232221-32232240 MsG0780037727.01.T01:CDS 35.0%
!!! GTGATGTTGGTGTTTTTTGT+AGG + Chr7:32233506-32233525 MsG0780037727.01.T01:intron 35.0%
ACATGATTTGAGTGTGCGTT+TGG - Chr7:32232349-32232368 None:intergenic 40.0%
AGAAAAGAACATCTTGGACG+AGG + Chr7:32231683-32231702 MsG0780037727.01.T01:CDS 40.0%
ATGGAAGATCGTTATACAGC+TGG + Chr7:32231118-32231137 MsG0780037727.01.T01:CDS 40.0%
ATTTGAGTGTGCGTTTGGAT+TGG - Chr7:32232344-32232363 None:intergenic 40.0%
CATACAATTACAGCACCTTC+AGG - Chr7:32232622-32232641 None:intergenic 40.0%
CATCCCTTCCGTTAAACAAA+AGG + Chr7:32232493-32232512 MsG0780037727.01.T01:intron 40.0%
CTCCTCTACTAATAACAGCA+CGG - Chr7:32231868-32231887 None:intergenic 40.0%
GAAGCTCTACAAAAACACCA+CGG - Chr7:32232664-32232683 None:intergenic 40.0%
GAGATCGACACTTGAAACAA+TGG + Chr7:32232133-32232152 MsG0780037727.01.T01:CDS 40.0%
GAGTGATGAAGATGATGTTG+AGG + Chr7:32231713-32231732 MsG0780037727.01.T01:CDS 40.0%
GTATGGTGAAACAACAGAAC+TGG + Chr7:32233593-32233612 MsG0780037727.01.T01:CDS 40.0%
GTTATTTGCCGCAAATTCAG+CGG - Chr7:32231661-32231680 None:intergenic 40.0%
TGAACTCAGAATCGGTATTG+AGG - Chr7:32231758-32231777 None:intergenic 40.0%
TGATGAAGATGATGTTGAGG+AGG + Chr7:32231716-32231735 MsG0780037727.01.T01:CDS 40.0%
TGGAAGATCGTTATACAGCT+GGG + Chr7:32231119-32231138 MsG0780037727.01.T01:CDS 40.0%
TTGAAATTTGTCTTGCAGGG+TGG + Chr7:32232045-32232064 MsG0780037727.01.T01:intron 40.0%
TTGATTTATGTCGCGGTGTT+TGG + Chr7:32232073-32232092 MsG0780037727.01.T01:CDS 40.0%
TTGTATGTTGAGGGTCATGT+AGG + Chr7:32232635-32232654 MsG0780037727.01.T01:intron 40.0%
TTGTTTAACGGAAGGGATGA+CGG - Chr7:32232492-32232511 None:intergenic 40.0%
! ATATGCTTGCTTGCTTGTTG+TGG + Chr7:32231520-32231539 MsG0780037727.01.T01:intron 40.0%
! CACAGAAAAGTACACCACAA+AGG - Chr7:32232832-32232851 None:intergenic 40.0%
! CACTTGTTGCAATGTTTAGC+TGG + Chr7:32233054-32233073 MsG0780037727.01.T01:intron 40.0%
! CGTCCAAGATGTTCTTTTCT+AGG - Chr7:32231683-32231702 None:intergenic 40.0%
! CTTGCTGTATCAAGAGGAAT+CGG + Chr7:32232111-32232130 MsG0780037727.01.T01:CDS 40.0%
! GAGGCTTCTTTGTTCTTTTC+AGG + Chr7:32233327-32233346 MsG0780037727.01.T01:intron 40.0%
! GGTGCTGTAATTGTATGTTG+AGG + Chr7:32232625-32232644 MsG0780037727.01.T01:intron 40.0%
! TTTGGTGTATTTGATGGCCA+TGG + Chr7:32231624-32231643 MsG0780037727.01.T01:CDS 40.0%
!! AGCTCCTTTTGTTTAACGGA+AGG - Chr7:32232500-32232519 None:intergenic 40.0%
!! GCTCCTTTTGTTTAACGGAA+GGG - Chr7:32232499-32232518 None:intergenic 40.0%
!! GTCGGTTTTCTTGACATACA+TGG + Chr7:32232900-32232919 MsG0780037727.01.T01:intron 40.0%
!! TCTGATTTGGTAGCTGCATA+TGG + Chr7:32231317-32231336 MsG0780037727.01.T01:intron 40.0%
!! TGGTGTTTTTGTAGAGCTTC+TGG + Chr7:32232664-32232683 MsG0780037727.01.T01:intron 40.0%
AAAGGACAGAATTGAGACCC+TGG + Chr7:32231935-32231954 MsG0780037727.01.T01:intron 45.0%
AACATGATCACCGACCTTCA+AGG + Chr7:32231904-32231923 MsG0780037727.01.T01:intron 45.0%
ACATGATCACCGACCTTCAA+GGG + Chr7:32231905-32231924 MsG0780037727.01.T01:intron 45.0%
ACCTTCAAGGGAAGACGAAA+AGG + Chr7:32231917-32231936 MsG0780037727.01.T01:intron 45.0%
ATTTATGTCGCGGTGTTTGG+AGG + Chr7:32232076-32232095 MsG0780037727.01.T01:CDS 45.0%
CATTGAGAACCATGTATGCC+TGG - Chr7:32232718-32232737 None:intergenic 45.0%
CTTAGTTGTGTCTTAACCGC+TGG + Chr7:32231836-32231855 MsG0780037727.01.T01:intron 45.0%
GGAAGATCGTTATACAGCTG+GGG + Chr7:32231120-32231139 MsG0780037727.01.T01:CDS 45.0%
GGTGAAACAACAGAACTGGA+AGG + Chr7:32233597-32233616 MsG0780037727.01.T01:CDS 45.0%
TGCAAAAGCCGCTGAATTTG+CGG + Chr7:32231650-32231669 MsG0780037727.01.T01:CDS 45.0%
TTTCGTCTTCCCTTGAAGGT+CGG - Chr7:32231917-32231936 None:intergenic 45.0%
! CGTGCTGTTATTAGTAGAGG+AGG + Chr7:32231866-32231885 MsG0780037727.01.T01:intron 45.0%
! CTAACCATCATTTGGCTCCA+AGG - Chr7:32232780-32232799 None:intergenic 45.0%
! GGATCTCTTGCTGTATCAAG+AGG + Chr7:32232105-32232124 MsG0780037727.01.T01:CDS 45.0%
! TCCTTTTCGTCTTCCCTTGA+AGG - Chr7:32231921-32231940 None:intergenic 45.0%
! TGCCGTGCTGTTATTAGTAG+AGG + Chr7:32231863-32231882 MsG0780037727.01.T01:intron 45.0%
!! CTTTAAGAAGGCACTGACCT+TGG + Chr7:32232760-32232779 MsG0780037727.01.T01:intron 45.0%
AAAAGGAACTAGCTGCGGTC+AGG + Chr7:32233083-32233102 MsG0780037727.01.T01:intron 50.0%
ACAGCTGGGGTTAATCTTCG+TGG + Chr7:32231133-32231152 MsG0780037727.01.T01:CDS 50.0%
CTGACCTTGGAGCCAAATGA+TGG + Chr7:32232773-32232792 MsG0780037727.01.T01:intron 50.0%
GCTGCTGAGGGTTTGTATAC+CGG + Chr7:32232527-32232546 MsG0780037727.01.T01:intron 50.0%
! GAGCTTTTCGTTGCTGCTGA+GGG + Chr7:32232515-32232534 MsG0780037727.01.T01:intron 50.0%
! GGTGTATTTGATGGCCATGG+AGG + Chr7:32231627-32231646 MsG0780037727.01.T01:CDS 50.0%
!! GCTTGTTGTGGCTGATGACT+TGG + Chr7:32231532-32231551 MsG0780037727.01.T01:intron 50.0%
!! TAGTAGAGGAGGTGTTGCTG+AGG + Chr7:32231877-32231896 MsG0780037727.01.T01:intron 50.0%
AACAGCACGGCAATCACCAG+CGG - Chr7:32231855-32231874 None:intergenic 55.0%
ACTAGCTGCGGTCAGGAAGA+AGG + Chr7:32233090-32233109 MsG0780037727.01.T01:intron 55.0%
CGCGGTGTTTGGAGGATTCA+AGG + Chr7:32232084-32232103 MsG0780037727.01.T01:CDS 55.0%
! GGAGCTTTTCGTTGCTGCTG+AGG + Chr7:32232514-32232533 MsG0780037727.01.T01:intron 55.0%
GTTGAGGAGGCAGTGAAGCG+CGG + Chr7:32231729-32231748 MsG0780037727.01.T01:CDS 60.0%
! CAGCGGCTTTTGCACCTCCA+TGG - Chr7:32231644-32231663 None:intergenic 60.0%
GAGGGTCATGTAGGCGACCG+TGG + Chr7:32232644-32232663 MsG0780037727.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 32231118 32233683 32231118 ID=MsG0780037727.01;Name=MsG0780037727.01
Chr7 mRNA 32231118 32233683 32231118 ID=MsG0780037727.01.T01;Parent=MsG0780037727.01;Name=MsG0780037727.01.T01;_AED=0.59;_eAED=0.59;_QI=0|0|0|0.5|1|0.83|6|0|230
Chr7 exon 32231118 32231168 32231118 ID=MsG0780037727.01.T01:exon:1383;Parent=MsG0780037727.01.T01
Chr7 exon 32231618 32231809 32231618 ID=MsG0780037727.01.T01:exon:1382;Parent=MsG0780037727.01.T01
Chr7 exon 32232063 32232242 32232063 ID=MsG0780037727.01.T01:exon:1381;Parent=MsG0780037727.01.T01
Chr7 exon 32233188 32233252 32233188 ID=MsG0780037727.01.T01:exon:1380;Parent=MsG0780037727.01.T01
Chr7 exon 32233349 32233394 32233349 ID=MsG0780037727.01.T01:exon:1379;Parent=MsG0780037727.01.T01
Chr7 exon 32233528 32233683 32233528 ID=MsG0780037727.01.T01:exon:1378;Parent=MsG0780037727.01.T01
Chr7 CDS 32231118 32231168 32231118 ID=MsG0780037727.01.T01:cds;Parent=MsG0780037727.01.T01
Chr7 CDS 32231618 32231809 32231618 ID=MsG0780037727.01.T01:cds;Parent=MsG0780037727.01.T01
Chr7 CDS 32232063 32232242 32232063 ID=MsG0780037727.01.T01:cds;Parent=MsG0780037727.01.T01
Chr7 CDS 32233188 32233252 32233188 ID=MsG0780037727.01.T01:cds;Parent=MsG0780037727.01.T01
Chr7 CDS 32233349 32233394 32233349 ID=MsG0780037727.01.T01:cds;Parent=MsG0780037727.01.T01
Chr7 CDS 32233528 32233683 32233528 ID=MsG0780037727.01.T01:cds;Parent=MsG0780037727.01.T01
Gene Sequence

>MsG0780037727.01.T01

ATGGAAGATCGTTATACAGCTGGGGTTAATCTTCGTGGTGAAAACAATTTGGCTTTTTTTGGTGTATTTGATGGCCATGGAGGTGCAAAAGCCGCTGAATTTGCGGCAAATAACCTAGAAAAGAACATCTTGGACGAGGTGATCATGAGTGATGAAGATGATGTTGAGGAGGCAGTGAAGCGCGGTTACCTCAATACCGATTCTGAGTTCATGAAAAAAGATCTGCATGGTGGTTCTTGTTGTGGTGGTTATGTTGATTTATGTCGCGGTGTTTGGAGGATTCAAGGATCTCTTGCTGTATCAAGAGGAATCGGAGATCGACACTTGAAACAATGGGTGACAGCAGAGCCTGAGACTAAAGTTATTAGAATTGAACCTGAACATGACTTGTTAATATTAGCTTCAGATGGATTATGGGATAAGATATCTGATAGGACTGATCTAGAGAAAAAGCATATAGTAAGATGTTTCAATAGGATAGCACAAAGGTTTATGTTGAACAATCATATCATTGCAACATACATATACAAAACGGAAGACAATAGAGATGGAAATTATGTGGATAATTGTTTTGTTTTGAATGTTTTGTCTTCAATTGTGTATGGTGAAACAACAGAACTGGAAGGAGATGCTAATGATGAGCAGATAAAGATTGCTTATAGACGTTTGGCGAAATTTTATCATCCAGAT
Protein sequence

>MsG0780037727.01.T01

MEDRYTAGVNLRGENNLAFFGVFDGHGGAKAAEFAANNLEKNILDEVIMSDEDDVEEAVKRGYLNTDSEFMKKDLHGGSCCGGYVDLCRGVWRIQGSLAVSRGIGDRHLKQWVTAEPETKVIRIEPEHDLLILASDGLWDKISDRTDLEKKHIVRCFNRIAQRFMLNNHIIATYIYKTEDNRDGNYVDNCFVLNVLSSIVYGETTELEGDANDEQIKIAYRRLAKFYHPD