AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038022.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038022.01.T01 MTR_4g028060 83.556 225 29 3 2 225 1 218 1.01e-124 352
MsG0780038022.01.T01 MTR_8g007380 44.199 181 92 3 30 209 10 182 4.33e-48 157
MsG0780038022.01.T01 MTR_7g081130 41.538 195 96 5 30 213 11 198 4.81e-47 154
MsG0780038022.01.T01 MTR_7g094880 39.873 158 90 3 30 187 31 183 5.37e-36 126
MsG0780038022.01.T01 MTR_7g094880 46.957 115 60 1 73 187 85 198 6.20e-36 127
MsG0780038022.01.T01 MTR_2g088860 42.778 180 94 2 30 200 26 205 9.41e-36 126
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038022.01.T01 AT3G60550 75.714 210 51 0 1 210 1 210 3.81e-117 333
MsG0780038022.01.T01 AT2G45080 72.444 225 54 3 5 225 2 222 1.50e-113 324
MsG0780038022.01.T01 AT2G44740 45.912 159 82 2 32 190 13 167 1.42e-45 150
MsG0780038022.01.T01 AT5G07450 41.212 165 93 1 30 194 21 181 8.05e-44 147
MsG0780038022.01.T01 AT5G61650 41.615 161 86 1 30 190 23 175 9.08e-42 141
MsG0780038022.01.T01 AT3G21870 37.778 180 109 2 26 205 21 197 1.03e-38 133
MsG0780038022.01.T01 AT3G63120 41.096 146 83 2 58 203 56 198 2.22e-36 127
MsG0780038022.01.T01 AT3G63120 41.096 146 83 2 58 203 56 198 2.22e-36 127
MsG0780038022.01.T01 AT3G05327 37.126 167 98 2 26 188 27 190 3.12e-33 119

Find 99 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACAAGTCTTCAACATATT+TGG 0.156502 7:+38462789 None:intergenic
GCCTTAATGGCGCTTAATTA+AGG 0.224417 7:+38460426 None:intergenic
GAACCATCACACCGCCTTAA+TGG 0.234401 7:+38460413 None:intergenic
CTAGACATAGAGAAGAAATT+AGG 0.241635 7:-38461493 MsG0780038022.01.T01:CDS
ACATCTGAACGAAGCTTTCT+AGG 0.244662 7:+38463150 None:intergenic
AACCATTGGATCGATCTTAT+TGG 0.264830 7:-38461278 MsG0780038022.01.T01:three_prime_UTR
ATCAAAGATATTTGTGCTAA+TGG 0.276166 7:+38462999 None:intergenic
TAGACATAGAGAAGAAATTA+GGG 0.276360 7:-38461492 MsG0780038022.01.T01:CDS
TAAGATTGAATTGTCAAATC+TGG 0.282184 7:+38462964 None:intergenic
GATATTTGTGCTAATGGCTT+TGG 0.301015 7:+38463005 None:intergenic
TCCTTAATTAAGCGCCATTA+AGG 0.307222 7:-38460427 MsG0780038022.01.T01:three_prime_UTR
ATCAAACAAATTGATCCATA+TGG 0.311853 7:-38460746 MsG0780038022.01.T01:three_prime_UTR
TTAGAGAGGGAAGTTGGAAT+TGG 0.314253 7:-38461566 MsG0780038022.01.T01:CDS
GAGAGGGAAGTTGGAATTGG+AGG 0.346339 7:-38461563 MsG0780038022.01.T01:CDS
AATAACACAACTGTAATATA+AGG 0.347053 7:+38460905 None:intergenic
CCACGCTCAATGGTTATATA+TGG 0.359386 7:+38460849 None:intergenic
ACAAAAGGAAATGTTTGTTC+AGG 0.375338 7:-38461047 MsG0780038022.01.T01:three_prime_UTR
CAACCTGTTACTACTATGTT+GGG 0.377761 7:-38461126 MsG0780038022.01.T01:three_prime_UTR
ATGAAGATGCCATCATGAAA+TGG 0.381747 7:+38463187 None:intergenic
TAGACTTCAGATTAATATAT+CGG 0.385935 7:+38460372 None:intergenic
TGGCTTATGTTTATATTGAT+AGG 0.393734 7:-38462891 MsG0780038022.01.T01:CDS
GCAAGAACATTTATAACTAA+TGG 0.407413 7:+38463093 None:intergenic
TAAGGCGGTGTGATGGTTCA+TGG 0.408477 7:-38460409 MsG0780038022.01.T01:three_prime_UTR
AAACCCAACATAGTAGTAAC+AGG 0.415604 7:+38461123 None:intergenic
AACTACAGAAATTCATACTT+TGG 0.421136 7:-38461704 MsG0780038022.01.T01:CDS
TCCATATGGGAACAGAGTTT+AGG 0.432084 7:-38460732 MsG0780038022.01.T01:three_prime_UTR
TCCTAAACTCTGTTCCCATA+TGG 0.433498 7:+38460731 None:intergenic
CCATCATGAAATGGGAAAGT+TGG 0.434014 7:+38463196 None:intergenic
AATATATCGGCCCATTCATC+AGG 0.438349 7:+38460385 None:intergenic
TGGTTCATGGGCCTGATGAA+TGG 0.439044 7:-38460396 MsG0780038022.01.T01:three_prime_UTR
TGCTATTCCAACCATTGGAT+TGG 0.450104 7:+38461230 None:intergenic
TGAAGATGCCATCATGAAAT+GGG 0.450773 7:+38463188 None:intergenic
CACAACTGTAATATAAGGTA+AGG 0.451960 7:+38460910 None:intergenic
TCAAACAAATTGATCCATAT+GGG 0.455648 7:-38460745 MsG0780038022.01.T01:three_prime_UTR
AATTCATACTTTGGAAGAGT+TGG 0.457498 7:-38461695 MsG0780038022.01.T01:CDS
AGGGAAGTTGGAATTGGAGG+AGG 0.461860 7:-38461560 MsG0780038022.01.T01:CDS
GCTTCTTATTACAACTATCA+TGG 0.462382 7:-38462818 MsG0780038022.01.T01:CDS
ACAGTTGCTATTCCAACCAT+TGG 0.465579 7:+38461225 None:intergenic
TCATACTTTGGAAGAGTTGG+TGG 0.468655 7:-38461692 MsG0780038022.01.T01:CDS
ATGGTGTGCTTGAATCTTGT+TGG 0.468814 7:+38463112 None:intergenic
TTTGCAGATCGAGGTACAAA+AGG 0.469334 7:-38461062 MsG0780038022.01.T01:three_prime_UTR
CATCATGAAATGGGAAAGTT+GGG 0.469832 7:+38463197 None:intergenic
CGTAGAACACATAAGATAGT+TGG 0.472327 7:-38460515 MsG0780038022.01.T01:three_prime_UTR
GTACACTAAAGCTGGACCTT+CGG 0.475563 7:-38462923 MsG0780038022.01.T01:CDS
ACAACCTGTTACTACTATGT+TGG 0.476226 7:-38461127 MsG0780038022.01.T01:three_prime_UTR
CTAGCATTGATTCTAAATCC+AGG 0.477986 7:+38462853 None:intergenic
TCTCATTTAGAGAGGGAAGT+TGG 0.480783 7:-38461572 MsG0780038022.01.T01:CDS
TGTCAAGCCAATCCAATGGT+TGG 0.488300 7:-38461237 MsG0780038022.01.T01:three_prime_UTR
ATTTGAAACCCATCATGAAA+AGG 0.493069 7:+38461630 None:intergenic
CCAACTTTCCCATTTCATGA+TGG 0.495799 7:-38463196 MsG0780038022.01.T01:exon
CAGGTTGTGTCTAGAATCGA+TGG 0.499885 7:+38461142 None:intergenic
ATGGTGTTGAGATATGAATT+CGG 0.500809 7:+38460868 None:intergenic
GGTTCATGGGCCTGATGAAT+GGG 0.501348 7:-38460395 MsG0780038022.01.T01:three_prime_UTR
AAGATTGAATTGTCAAATCT+GGG 0.505037 7:+38462965 None:intergenic
TGGACCTTCGGTTTATGTTG+TGG 0.513701 7:-38462911 MsG0780038022.01.T01:CDS
GCGATGCAAAAGCTCTGGTC+CGG 0.517479 7:-38460668 MsG0780038022.01.T01:three_prime_UTR
TAAGATAGTTGGAGATGAGT+TGG 0.518511 7:-38460504 MsG0780038022.01.T01:three_prime_UTR
TGAGATAAACAAGTTAGAGT+TGG 0.519006 7:-38461657 MsG0780038022.01.T01:CDS
ACACCAATGTCCACGCTCAA+TGG 0.519608 7:+38460839 None:intergenic
TCAATGCTAGGAATGTTCAT+AGG 0.519869 7:-38462840 MsG0780038022.01.T01:CDS
TGTTCGCGATGCAAAAGCTC+TGG 0.529608 7:-38460673 MsG0780038022.01.T01:three_prime_UTR
GGGAAGTTGGAATTGGAGGA+GGG 0.534046 7:-38461559 MsG0780038022.01.T01:CDS
AACAACAGAAAGATAACAAG+TGG 0.535300 7:+38461436 None:intergenic
TATCTATATTTGCAAACGTG+TGG 0.540760 7:+38461096 None:intergenic
AAGGCGGTGTGATGGTTCAT+GGG 0.547691 7:-38460408 MsG0780038022.01.T01:three_prime_UTR
GCGCCATTAAGGCGGTGTGA+TGG 0.557479 7:-38460416 MsG0780038022.01.T01:three_prime_UTR
CCAACACGAACATCGAGATC+AGG 0.563977 7:+38460705 None:intergenic
GTTATTGTTCTCATTTAGAG+AGG 0.566308 7:-38461580 MsG0780038022.01.T01:CDS
ATCTATATTTGCAAACGTGT+GGG 0.570370 7:+38461097 None:intergenic
TTAGACACTGACTTGAGCGC+CGG 0.572461 7:+38460649 None:intergenic
CTGGATTTAGAATCAATGCT+AGG 0.578456 7:-38462852 MsG0780038022.01.T01:CDS
CTCAAGTCAGTGTCTAAATG+AGG 0.578889 7:-38460643 MsG0780038022.01.T01:three_prime_UTR
GTGTGTGAGAAAGAGAGAAA+TGG 0.579058 7:-38460788 MsG0780038022.01.T01:three_prime_UTR
TAATGGCGCTTAATTAAGGA+AGG 0.594380 7:+38460430 None:intergenic
ATCCAATAAGATCGATCCAA+TGG 0.598432 7:+38461276 None:intergenic
TTTGCGTATGTTTGAATGAG+CGG 0.600648 7:-38461373 MsG0780038022.01.T01:three_prime_UTR
ACAACTGTAATATAAGGTAA+GGG 0.602945 7:+38460911 None:intergenic
TAACCATTGAGCGTGGACAT+TGG 0.611035 7:-38460842 MsG0780038022.01.T01:three_prime_UTR
ACATGTGTGCTTTACCACAT+AGG 0.612227 7:+38460455 None:intergenic
TTATTGTTCTCATTTAGAGA+GGG 0.614985 7:-38461579 MsG0780038022.01.T01:CDS
TTAATTAAGCGCCATTAAGG+CGG 0.617722 7:-38460424 MsG0780038022.01.T01:three_prime_UTR
TTCGAAGCAGTGCTCCTATG+TGG 0.625297 7:-38460469 MsG0780038022.01.T01:three_prime_UTR
TCTTATTACAACTATCATGG+TGG 0.626010 7:-38462815 MsG0780038022.01.T01:CDS
TGTGTCTAGAATCGATGGGA+TGG 0.639239 7:+38461147 None:intergenic
CCTGATCTCGATGTTCGTGT+TGG 0.645829 7:-38460705 MsG0780038022.01.T01:three_prime_UTR
AAGTCAGTGTCTAAATGAGG+AGG 0.652870 7:-38460640 MsG0780038022.01.T01:three_prime_UTR
ATTGAGCGTGGACATTGGTG+TGG 0.659802 7:-38460837 MsG0780038022.01.T01:three_prime_UTR
TTCACTAATTGAGAGAAACA+TGG 0.663008 7:-38463070 MsG0780038022.01.T01:CDS
ATCACATTGAGAAGACACTT+AGG 0.665084 7:-38461535 MsG0780038022.01.T01:CDS
ATAGTTGGAGATGAGTTGGA+CGG 0.674189 7:-38460500 MsG0780038022.01.T01:three_prime_UTR
CCATATATAACCATTGAGCG+TGG 0.678694 7:-38460849 MsG0780038022.01.T01:three_prime_UTR
TAAGCCACAACATAAACCGA+AGG 0.681604 7:+38462907 None:intergenic
ATAACTGCTTTCGAGAAATG+CGG 0.693829 7:-38460538 MsG0780038022.01.T01:three_prime_UTR
TATTGCTGCGATATTGCGAG+AGG 0.700741 7:-38461401 MsG0780038022.01.T01:three_prime_UTR
TTGAGCGTGGACATTGGTGT+GGG 0.700780 7:-38460836 MsG0780038022.01.T01:three_prime_UTR
AGGTTGTGTCTAGAATCGAT+GGG 0.706409 7:+38461143 None:intergenic
AATATGATTGTACATGAGCG+TGG 0.714469 7:-38460595 MsG0780038022.01.T01:three_prime_UTR
AGACATAGAGAAGAAATTAG+GGG 0.729133 7:-38461491 MsG0780038022.01.T01:CDS
GTGGATTACAACATGACACG+AGG 0.753417 7:+38461455 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTATTTTAGCATAAA+AGG + Chr7:38461211-38461230 None:intergenic 10.0%
!! AAAATCTTTGTAAACAAATT+AGG + Chr7:38461711-38461730 None:intergenic 15.0%
!! TGAATATGAAAAATACTAAA+AGG + Chr7:38460887-38460906 None:intergenic 15.0%
!!! AAAAAAAAATACTGATTACA+TGG + Chr7:38462620-38462639 None:intergenic 15.0%
!!! AATTTGCTTTGAATAAAAAT+AGG + Chr7:38461600-38461619 None:intergenic 15.0%
!!! ATTTGCTTTGAATAAAAATA+GGG + Chr7:38461599-38461618 None:intergenic 15.0%
!!! ATTTTAAGTATTTTGGTAAT+TGG - Chr7:38460911-38460930 MsG0780038022.01.T01:three_prime_UTR 15.0%
!!! TATTTTTATTCAAAGCAAAT+TGG - Chr7:38461599-38461618 MsG0780038022.01.T01:CDS 15.0%
!!! TCAACATATTTTAAGTATTT+TGG - Chr7:38460904-38460923 MsG0780038022.01.T01:three_prime_UTR 15.0%
!!! TTTTAAGTATTTTGGTAATT+GGG - Chr7:38460912-38460931 MsG0780038022.01.T01:three_prime_UTR 15.0%
!! AAAAAGTAACAATTGAATTC+AGG + Chr7:38460855-38460874 None:intergenic 20.0%
!! AATAACACAACTGTAATATA+AGG + Chr7:38462676-38462695 None:intergenic 20.0%
!! ATGTATCAACAATAAACAAA+AGG + Chr7:38460825-38460844 None:intergenic 20.0%
!! GTACTTACTTATTGTTATAT+CGG + Chr7:38461297-38461316 None:intergenic 20.0%
!!! CAATTTGTTTGATAAAAATG+TGG + Chr7:38462825-38462844 None:intergenic 20.0%
!!! CTTCATCAATATTTTGATAT+CGG + Chr7:38461329-38461348 None:intergenic 20.0%
!!! TTGCTATTAAAATTGAGAAT+TGG - Chr7:38461798-38461817 MsG0780038022.01.T01:intron 20.0%
! AACTACAGAAATTCATACTT+TGG - Chr7:38461874-38461893 MsG0780038022.01.T01:intron 25.0%
! AAGATTGAATTGTCAAATCT+GGG + Chr7:38460616-38460635 None:intergenic 25.0%
! ACAACTGTAATATAAGGTAA+GGG + Chr7:38462670-38462689 None:intergenic 25.0%
! ACAATAAGTAAGTACATTGA+AGG - Chr7:38461302-38461321 MsG0780038022.01.T01:three_prime_UTR 25.0%
! ATCAAACAAATTGATCCATA+TGG - Chr7:38462832-38462851 MsG0780038022.01.T01:CDS 25.0%
! ATCAAAGATATTTGTGCTAA+TGG + Chr7:38460582-38460601 None:intergenic 25.0%
! GATAAATTGAAAGATTGTTG+TGG - Chr7:38461413-38461432 MsG0780038022.01.T01:three_prime_UTR 25.0%
! GCAAGAACATTTATAACTAA+TGG + Chr7:38460488-38460507 None:intergenic 25.0%
! TAAGATTGAATTGTCAAATC+TGG + Chr7:38460617-38460636 None:intergenic 25.0%
! TAGACATAGAGAAGAAATTA+GGG - Chr7:38462086-38462105 MsG0780038022.01.T01:intron 25.0%
! TCAAACAAATTGATCCATAT+GGG - Chr7:38462833-38462852 MsG0780038022.01.T01:CDS 25.0%
! TGATTACTCATTACACATTA+AGG + Chr7:38461121-38461140 None:intergenic 25.0%
! TGGCTTATGTTTATATTGAT+AGG - Chr7:38460687-38460706 MsG0780038022.01.T01:three_prime_UTR 25.0%
! TTATTGTTCTCATTTAGAGA+GGG - Chr7:38461999-38462018 MsG0780038022.01.T01:intron 25.0%
!! CAGTTTTCAATAATAACCAT+TGG - Chr7:38462286-38462305 MsG0780038022.01.T01:intron 25.0%
!! CTTATCTTGAGAGAATTTTT+AGG - Chr7:38460633-38460652 MsG0780038022.01.T01:three_prime_UTR 25.0%
!!! ATTTTGTTTGATTTGATCAC+AGG - Chr7:38461851-38461870 MsG0780038022.01.T01:intron 25.0%
!!! CACAAAGCACAATATTTTTA+TGG - Chr7:38461520-38461539 MsG0780038022.01.T01:CDS 25.0%
AACAACAGAAAGATAACAAG+TGG + Chr7:38462145-38462164 None:intergenic 30.0%
ACAAAAGGAAATGTTTGTTC+AGG - Chr7:38462531-38462550 MsG0780038022.01.T01:intron 30.0%
AGACATAGAGAAGAAATTAG+GGG - Chr7:38462087-38462106 MsG0780038022.01.T01:intron 30.0%
ATCTATATTTGCAAACGTGT+GGG + Chr7:38462484-38462503 None:intergenic 30.0%
CACAACTGTAATATAAGGTA+AGG + Chr7:38462671-38462690 None:intergenic 30.0%
CTAGACATAGAGAAGAAATT+AGG - Chr7:38462085-38462104 MsG0780038022.01.T01:intron 30.0%
GAGTTTGTAAAAATTGGACT+AGG - Chr7:38462229-38462248 MsG0780038022.01.T01:intron 30.0%
GCTTCTTATTACAACTATCA+TGG - Chr7:38460760-38460779 MsG0780038022.01.T01:three_prime_UTR 30.0%
GTTATTGTTCTCATTTAGAG+AGG - Chr7:38461998-38462017 MsG0780038022.01.T01:intron 30.0%
TACCTTTGTTGACAAGATTA+TGG - Chr7:38461058-38461077 MsG0780038022.01.T01:three_prime_UTR 30.0%
TATCTATATTTGCAAACGTG+TGG + Chr7:38462485-38462504 None:intergenic 30.0%
TCACAAGTCTTCAACATATT+TGG + Chr7:38460792-38460811 None:intergenic 30.0%
TCTTATTACAACTATCATGG+TGG - Chr7:38460763-38460782 MsG0780038022.01.T01:three_prime_UTR 30.0%
TGAGATAAACAAGTTAGAGT+TGG - Chr7:38461921-38461940 MsG0780038022.01.T01:intron 30.0%
TTACCAAGTAGAATCATTGA+TGG + Chr7:38460959-38460978 None:intergenic 30.0%
TTCACTAATTGAGAGAAACA+TGG - Chr7:38460508-38460527 MsG0780038022.01.T01:three_prime_UTR 30.0%
TTGACATCAAGCAATTGTTA+TGG - Chr7:38461730-38461749 MsG0780038022.01.T01:intron 30.0%
TTTGAGTAAATCAAGACTCA+GGG - Chr7:38460986-38461005 MsG0780038022.01.T01:three_prime_UTR 30.0%
! AAATCACACTGTGATTTTTG+CGG + Chr7:38462408-38462427 None:intergenic 30.0%
! AATTCATACTTTGGAAGAGT+TGG - Chr7:38461883-38461902 MsG0780038022.01.T01:intron 30.0%
! ATGGTGTTGAGATATGAATT+CGG + Chr7:38462713-38462732 None:intergenic 30.0%
! ATTTGAAACCCATCATGAAA+AGG + Chr7:38461951-38461970 None:intergenic 30.0%
! TTGGAATTCCTTTTCATGAT+GGG - Chr7:38461940-38461959 MsG0780038022.01.T01:intron 30.0%
!! TTTTGAGTAAATCAAGACTC+AGG - Chr7:38460985-38461004 MsG0780038022.01.T01:three_prime_UTR 30.0%
!!! ATTTTTAGGTACACTAAAGC+TGG - Chr7:38460647-38460666 MsG0780038022.01.T01:three_prime_UTR 30.0%
!!! TGTTCAGGTTTTGAGTAATA+GGG - Chr7:38462546-38462565 MsG0780038022.01.T01:intron 30.0%
!!! TTGTTCAGGTTTTGAGTAAT+AGG - Chr7:38462545-38462564 MsG0780038022.01.T01:intron 30.0%
AAACCCAACATAGTAGTAAC+AGG + Chr7:38462458-38462477 None:intergenic 35.0%
AAATTGAGAATTGGAACTGC+AGG - Chr7:38461807-38461826 MsG0780038022.01.T01:intron 35.0%
AACCATTGGATCGATCTTAT+TGG - Chr7:38462300-38462319 MsG0780038022.01.T01:intron 35.0%
AATATGATTGTACATGAGCG+TGG - Chr7:38462983-38463002 MsG0780038022.01.T01:CDS 35.0%
ACAACCTGTTACTACTATGT+TGG - Chr7:38462451-38462470 MsG0780038022.01.T01:intron 35.0%
AGCCATAATCTTGTCAACAA+AGG + Chr7:38461063-38461082 None:intergenic 35.0%
AGCGGTGAGTTTGTAAAAAT+TGG - Chr7:38462223-38462242 MsG0780038022.01.T01:intron 35.0%
ATAACTGCTTTCGAGAAATG+CGG - Chr7:38463040-38463059 MsG0780038022.01.T01:CDS 35.0%
ATCACATTGAGAAGACACTT+AGG - Chr7:38462043-38462062 MsG0780038022.01.T01:intron 35.0%
ATCCAATAAGATCGATCCAA+TGG + Chr7:38462305-38462324 None:intergenic 35.0%
ATGAAGATGCCATCATGAAA+TGG + Chr7:38460394-38460413 None:intergenic 35.0%
CAACCTGTTACTACTATGTT+GGG - Chr7:38462452-38462471 MsG0780038022.01.T01:intron 35.0%
CATCATGAAATGGGAAAGTT+GGG + Chr7:38460384-38460403 None:intergenic 35.0%
CGTAGAACACATAAGATAGT+TGG - Chr7:38463063-38463082 MsG0780038022.01.T01:CDS 35.0%
GATATTTGTGCTAATGGCTT+TGG + Chr7:38460576-38460595 None:intergenic 35.0%
TAAGATAGTTGGAGATGAGT+TGG - Chr7:38463074-38463093 MsG0780038022.01.T01:CDS 35.0%
TAATGGCGCTTAATTAAGGA+AGG + Chr7:38463151-38463170 None:intergenic 35.0%
TCAATGCTAGGAATGTTCAT+AGG - Chr7:38460738-38460757 MsG0780038022.01.T01:three_prime_UTR 35.0%
TCCTTAATTAAGCGCCATTA+AGG - Chr7:38463151-38463170 MsG0780038022.01.T01:CDS 35.0%
TGAAGATGCCATCATGAAAT+GGG + Chr7:38460393-38460412 None:intergenic 35.0%
TGTCCATCAATGATTCTACT+TGG - Chr7:38460953-38460972 MsG0780038022.01.T01:three_prime_UTR 35.0%
TTAATTAAGCGCCATTAAGG+CGG - Chr7:38463154-38463173 MsG0780038022.01.T01:CDS 35.0%
TTTGCGTATGTTTGAATGAG+CGG - Chr7:38462205-38462224 MsG0780038022.01.T01:intron 35.0%
! CTGGATTTAGAATCAATGCT+AGG - Chr7:38460726-38460745 MsG0780038022.01.T01:three_prime_UTR 35.0%
! GTTGGAATTCCTTTTCATGA+TGG - Chr7:38461939-38461958 MsG0780038022.01.T01:intron 35.0%
! TTTTTGTCAAGCCAATCCAA+TGG - Chr7:38462337-38462356 MsG0780038022.01.T01:intron 35.0%
!! AGGTTTTGTCAGATTAATCC+TGG - Chr7:38460707-38460726 MsG0780038022.01.T01:three_prime_UTR 35.0%
!! CTAGCATTGATTCTAAATCC+AGG + Chr7:38460728-38460747 None:intergenic 35.0%
!! TGTTGCTTTACTTCTCGATT+TGG - Chr7:38461624-38461643 MsG0780038022.01.T01:CDS 35.0%
AAGTCAGTGTCTAAATGAGG+AGG - Chr7:38462938-38462957 MsG0780038022.01.T01:CDS 40.0%
AATATATCGGCCCATTCATC+AGG + Chr7:38463196-38463215 None:intergenic 40.0%
ACATCTGAACGAAGCTTTCT+AGG + Chr7:38460431-38460450 None:intergenic 40.0%
ACATGTGTGCTTTACCACAT+AGG + Chr7:38463126-38463145 None:intergenic 40.0%
ATGGTGTGCTTGAATCTTGT+TGG + Chr7:38460469-38460488 None:intergenic 40.0%
CCAACTTTCCCATTTCATGA+TGG - Chr7:38460382-38460401 MsG0780038022.01.T01:three_prime_UTR 40.0%
CCACGCTCAATGGTTATATA+TGG + Chr7:38462732-38462751 None:intergenic 40.0%
CCATATATAACCATTGAGCG+TGG - Chr7:38462729-38462748 MsG0780038022.01.T01:intron 40.0%
CCATCATGAAATGGGAAAGT+TGG + Chr7:38460385-38460404 None:intergenic 40.0%
CTCAAGTCAGTGTCTAAATG+AGG - Chr7:38462935-38462954 MsG0780038022.01.T01:CDS 40.0%
GCCTTAATGGCGCTTAATTA+AGG + Chr7:38463155-38463174 None:intergenic 40.0%
GTGTGTGAGAAAGAGAGAAA+TGG - Chr7:38462790-38462809 MsG0780038022.01.T01:intron 40.0%
TAAGCCACAACATAAACCGA+AGG + Chr7:38460674-38460693 None:intergenic 40.0%
TCCATATGGGAACAGAGTTT+AGG - Chr7:38462846-38462865 MsG0780038022.01.T01:CDS 40.0%
TCCTAAACTCTGTTCCCATA+TGG + Chr7:38462850-38462869 None:intergenic 40.0%
TCTCATTTAGAGAGGGAAGT+TGG - Chr7:38462006-38462025 MsG0780038022.01.T01:intron 40.0%
TGCTATTCCAACCATTGGAT+TGG + Chr7:38462351-38462370 None:intergenic 40.0%
TTAGAGAGGGAAGTTGGAAT+TGG - Chr7:38462012-38462031 MsG0780038022.01.T01:intron 40.0%
TTTGCAGATCGAGGTACAAA+AGG - Chr7:38462516-38462535 MsG0780038022.01.T01:intron 40.0%
! ACAGTTGCTATTCCAACCAT+TGG + Chr7:38462356-38462375 None:intergenic 40.0%
! AGGTTGTGTCTAGAATCGAT+GGG + Chr7:38462438-38462457 None:intergenic 40.0%
! ATAGTTGGAGATGAGTTGGA+CGG - Chr7:38463078-38463097 MsG0780038022.01.T01:CDS 40.0%
! CACTGTGATTTTTGCGGATT+TGG + Chr7:38462402-38462421 None:intergenic 40.0%
! TCATACTTTGGAAGAGTTGG+TGG - Chr7:38461886-38461905 MsG0780038022.01.T01:intron 40.0%
!! AAATGTTAACTTGTGCCCCA+AGG - Chr7:38461544-38461563 MsG0780038022.01.T01:CDS 40.0%
!! AATGTTAACTTGTGCCCCAA+GGG - Chr7:38461545-38461564 MsG0780038022.01.T01:CDS 40.0%
!! CAGATTTTGTTTGCAGATCG+AGG - Chr7:38462507-38462526 MsG0780038022.01.T01:intron 40.0%
!! TGCTTTACTTCTCGATTTGG+CGG - Chr7:38461627-38461646 MsG0780038022.01.T01:CDS 40.0%
GTACACTAAAGCTGGACCTT+CGG - Chr7:38460655-38460674 MsG0780038022.01.T01:three_prime_UTR 45.0%
TAACCATTGAGCGTGGACAT+TGG - Chr7:38462736-38462755 MsG0780038022.01.T01:intron 45.0%
TATTGCTGCGATATTGCGAG+AGG - Chr7:38462177-38462196 MsG0780038022.01.T01:intron 45.0%
TGGACCTTCGGTTTATGTTG+TGG - Chr7:38460667-38460686 MsG0780038022.01.T01:three_prime_UTR 45.0%
TGTCAAGCCAATCCAATGGT+TGG - Chr7:38462341-38462360 MsG0780038022.01.T01:intron 45.0%
! CAGGTTGTGTCTAGAATCGA+TGG + Chr7:38462439-38462458 None:intergenic 45.0%
! GTGGATTACAACATGACACG+AGG + Chr7:38462126-38462145 None:intergenic 45.0%
! TGTGTCTAGAATCGATGGGA+TGG + Chr7:38462434-38462453 None:intergenic 45.0%
!! AAAAATTTGTAATATATATA+TGG + Chr7:38461486-38461505 None:intergenic 5.0%
AAGGCGGTGTGATGGTTCAT+GGG - Chr7:38463170-38463189 MsG0780038022.01.T01:CDS 50.0%
ACACCAATGTCCACGCTCAA+TGG + Chr7:38462742-38462761 None:intergenic 50.0%
AGGGAAGTTGGAATTGGAGG+AGG - Chr7:38462018-38462037 MsG0780038022.01.T01:intron 50.0%
ATTGAGCGTGGACATTGGTG+TGG - Chr7:38462741-38462760 MsG0780038022.01.T01:intron 50.0%
CCAACACGAACATCGAGATC+AGG + Chr7:38462876-38462895 None:intergenic 50.0%
CCTGATCTCGATGTTCGTGT+TGG - Chr7:38462873-38462892 MsG0780038022.01.T01:CDS 50.0%
GAACCATCACACCGCCTTAA+TGG + Chr7:38463168-38463187 None:intergenic 50.0%
GAGAGGGAAGTTGGAATTGG+AGG - Chr7:38462015-38462034 MsG0780038022.01.T01:intron 50.0%
GGGAAGTTGGAATTGGAGGA+GGG - Chr7:38462019-38462038 MsG0780038022.01.T01:intron 50.0%
GGTTCATGGGCCTGATGAAT+GGG - Chr7:38463183-38463202 MsG0780038022.01.T01:CDS 50.0%
TAAGGCGGTGTGATGGTTCA+TGG - Chr7:38463169-38463188 MsG0780038022.01.T01:CDS 50.0%
TGCCCTTAGCATATGCCCTT+GGG + Chr7:38461563-38461582 None:intergenic 50.0%
TGGTTCATGGGCCTGATGAA+TGG - Chr7:38463182-38463201 MsG0780038022.01.T01:CDS 50.0%
TGTTCGCGATGCAAAAGCTC+TGG - Chr7:38462905-38462924 MsG0780038022.01.T01:CDS 50.0%
TTCGAAGCAGTGCTCCTATG+TGG - Chr7:38463109-38463128 MsG0780038022.01.T01:CDS 50.0%
TTGAGCGTGGACATTGGTGT+GGG - Chr7:38462742-38462761 MsG0780038022.01.T01:intron 50.0%
!! TTAGACACTGACTTGAGCGC+CGG + Chr7:38462932-38462951 None:intergenic 50.0%
GCCCTTAGCATATGCCCTTG+GGG + Chr7:38461562-38461581 None:intergenic 55.0%
GTGCCCTTAGCATATGCCCT+TGG + Chr7:38461564-38461583 None:intergenic 55.0%
! GCCCCAAGGGCATATGCTAA+GGG - Chr7:38461558-38461577 MsG0780038022.01.T01:CDS 55.0%
! GCGATGCAAAAGCTCTGGTC+CGG - Chr7:38462910-38462929 MsG0780038022.01.T01:CDS 55.0%
! TGCCCCAAGGGCATATGCTA+AGG - Chr7:38461557-38461576 MsG0780038022.01.T01:CDS 55.0%
GCGCCATTAAGGCGGTGTGA+TGG - Chr7:38463162-38463181 MsG0780038022.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 38460376 38463224 38460376 ID=MsG0780038022.01;Name=MsG0780038022.01
Chr7 mRNA 38460376 38463224 38460376 ID=MsG0780038022.01.T01;Parent=MsG0780038022.01;Name=MsG0780038022.01.T01;_AED=0.24;_eAED=0.24;_QI=22|1|1|1|1|1|2|1084|225
Chr7 exon 38462793 38463224 38462793 ID=MsG0780038022.01.T01:exon:5298;Parent=MsG0780038022.01.T01
Chr7 exon 38460376 38461727 38460376 ID=MsG0780038022.01.T01:exon:5299;Parent=MsG0780038022.01.T01
Chr7 five_prime_UTR 38463203 38463224 38463203 ID=MsG0780038022.01.T01:five_prime_utr;Parent=MsG0780038022.01.T01
Chr7 CDS 38462793 38463202 38462793 ID=MsG0780038022.01.T01:cds;Parent=MsG0780038022.01.T01
Chr7 CDS 38461460 38461727 38461460 ID=MsG0780038022.01.T01:cds;Parent=MsG0780038022.01.T01
Chr7 three_prime_UTR 38460376 38461459 38460376 ID=MsG0780038022.01.T01:three_prime_utr;Parent=MsG0780038022.01.T01
Gene Sequence

>MsG0780038022.01.T01

ATGATGGCATCTTCATCTCTAATAATTTCACCTAGAAAGCTTCGTTCAGATGTATATTCTTTTTCATACCAACAAGATTCAAGCACACCATTAGTTATAAATGTTCTTGCTTCACTAATTGAGAGAAACATGGCAAGAACAAAGAGAATAGTAAAAAATTGTTCAAGATCTTTGTCCAAAGCCATTAGCACAAATATCTTTGATTGTAGAGAGATCCCAGATTTGACAATTCAATCTTATCTTGAGAGAATTTTTAGGTACACTAAAGCTGGACCTTCGGTTTATGTTGTGGCTTATGTTTATATTGATAGGTTTTGTCAGATTAATCCTGGATTTAGAATCAATGCTAGGAATGTTCATAGGCTTCTTATTACAACTATCATGGTGGCTTCCAAATATGTTGAAGACTTGAACTACAGAAATTCATACTTTGGAAGAGTTGGTGGATTAACAACAAGTGAGATAAACAAGTTAGAGTTGGAATTCCTTTTCATGATGGGTTTCAAATTACATGTAAATGTGAGTGTTTTTGAGAGTTATTGTTCTCATTTAGAGAGGGAAGTTGGAATTGGAGGAGGGTATCACATTGAGAAGACACTTAGGTGTGCAGAAGAAATCAAAGCTAGACATAGAGAAGAAATTAGGGGTTACACACAGATTCCTCGTGTCATGTTGTAA
Protein sequence

>MsG0780038022.01.T01

MMASSSLIISPRKLRSDVYSFSYQQDSSTPLVINVLASLIERNMARTKRIVKNCSRSLSKAISTNIFDCREIPDLTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQINPGFRINARNVHRLLITTIMVASKYVEDLNYRNSYFGRVGGLTTSEINKLELEFLFMMGFKLHVNVSVFESYCSHLEREVGIGGGYHIEKTLRCAEEIKARHREEIRGYTQIPRVML*