AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038347.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038347.01.T01 MTR_7g051910 97.208 394 11 0 1 394 1 394 0.0 783
MsG0780038347.01.T01 MTR_2g026080 43.316 374 194 8 25 385 29 397 8.89e-101 305
MsG0780038347.01.T01 MTR_4g133620 42.216 379 204 6 15 382 15 389 3.52e-98 298
MsG0780038347.01.T01 MTR_3g058510 36.648 352 218 5 16 363 17 367 4.55e-77 243
MsG0780038347.01.T01 MTR_5g093520 36.533 375 214 12 6 363 18 385 1.01e-73 236
MsG0780038347.01.T01 MTR_8g009880 32.898 383 229 8 25 387 23 397 1.44e-67 219
MsG0780038347.01.T01 MTR_5g097620 30.075 399 244 6 20 394 55 442 6.05e-63 208
MsG0780038347.01.T01 MTR_8g011650 38.974 195 115 3 1 194 9 200 8.53e-39 139
MsG0780038347.01.T01 MTR_8g028075 31.077 325 196 11 49 364 249 554 5.73e-36 138
MsG0780038347.01.T01 MTR_7g117375 30.435 345 203 15 43 374 65 385 4.32e-26 108
MsG0780038347.01.T01 MTR_7g098270 28.000 200 117 5 3 197 1 178 2.28e-18 84.3
MsG0780038347.01.T01 MTR_7g051870 50.820 61 27 1 284 341 17 77 7.99e-14 66.6
MsG0780038347.01.T01 MTR_4g096780 25.000 196 133 5 206 390 57 249 3.56e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038347.01.T01 AT3G25290 59.416 377 143 5 10 376 13 389 1.14e-161 459
MsG0780038347.01.T01 AT3G25290 59.416 377 143 5 10 376 13 389 1.14e-161 459
MsG0780038347.01.T01 AT4G12980 56.545 382 156 4 5 376 9 390 1.23e-152 437
MsG0780038347.01.T01 AT5G47530 48.774 367 183 5 25 387 27 392 3.31e-123 362
MsG0780038347.01.T01 AT4G17280 47.837 393 196 7 3 389 11 400 1.65e-120 355
MsG0780038347.01.T01 AT5G35735 44.709 378 195 7 25 393 29 401 1.63e-113 337
MsG0780038347.01.T01 AT3G59070 39.946 368 206 8 3 359 9 372 4.18e-80 254
MsG0780038347.01.T01 AT2G04850 32.000 375 229 7 25 380 25 392 1.70e-57 193
MsG0780038347.01.T01 AT5G48750 37.551 245 145 4 6 244 12 254 1.58e-48 165
MsG0780038347.01.T01 AT3G07390 43.915 189 95 4 12 196 37 218 1.46e-45 158
MsG0780038347.01.T01 AT3G07570 28.684 380 232 12 1 359 1 362 4.15e-35 133
MsG0780038347.01.T01 AT3G61750 38.562 153 87 4 207 356 143 291 3.81e-27 110
MsG0780038347.01.T01 AT3G61750 38.562 153 87 4 207 356 220 368 7.54e-27 110
MsG0780038347.01.T01 AT3G07390 44.954 109 57 2 12 117 37 145 1.26e-25 102
MsG0780038347.01.T01 AT2G30890 27.749 191 115 6 206 383 55 235 1.29e-11 64.7
MsG0780038347.01.T01 AT5G54830 27.179 195 124 5 147 334 635 818 8.78e-11 64.3

Find 126 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTATCTGCTTATATTAT+TGG 0.122882 7:+44788411 MsG0780038347.01.T01:CDS
TTGAATGGAGCCAAAGATTT+TGG 0.139492 7:+44788046 MsG0780038347.01.T01:CDS
GCTAATTTCCATTTCTCTTC+GGG 0.286894 7:-44788839 None:intergenic
ATCATCATTCCCAAAATCTT+TGG 0.290620 7:-44788056 None:intergenic
TTCAGTAGTCATCGTAATAT+TGG 0.307574 7:+44788489 MsG0780038347.01.T01:CDS
GCTTATATTATTGGAGTTGC+TGG 0.311192 7:+44788420 MsG0780038347.01.T01:CDS
GGAGTTGCTGGCTGGGGAAC+TGG 0.312142 7:+44788432 MsG0780038347.01.T01:CDS
CTATATTTGTGATCCTTGTT+TGG 0.319525 7:-44788725 None:intergenic
GCTTGGTTCTATATTCATAT+TGG 0.322267 7:+44788384 MsG0780038347.01.T01:CDS
TTGCAATACCTTCTCTTGAT+TGG 0.327027 7:+44789066 MsG0780038347.01.T01:three_prime_UTR
TGTGATCCTTGTTTGGCCTT+AGG 0.328658 7:-44788718 None:intergenic
CTTCAGGCGGTTGGATATCC+TGG 0.328663 7:+44787708 MsG0780038347.01.T01:CDS
TTTCGCCACCGTTAAGGTTC+CGG 0.345027 7:+44787910 MsG0780038347.01.T01:CDS
CACTTGCCAAACATGGTTAA+TGG 0.345387 7:-44787945 None:intergenic
AGCTAATTTCCATTTCTCTT+CGG 0.357164 7:-44788840 None:intergenic
CGACCATTCCTGTGGCGGTT+GGG 0.359413 7:-44787739 None:intergenic
AACATTAACCGGAACCTTAA+CGG 0.364696 7:-44787918 None:intergenic
GTTGCGACCCCGCCAACTTC+AGG 0.367165 7:+44787692 MsG0780038347.01.T01:CDS
TTACCGCCATTAACCATGTT+TGG 0.368570 7:+44787939 MsG0780038347.01.T01:CDS
AATATCTATCATTATAGCTT+TGG 0.370042 7:+44788758 MsG0780038347.01.T01:CDS
CATTCTTTCACTTCTTCCTC+TGG 0.370354 7:+44787453 MsG0780038347.01.T01:five_prime_UTR
ATATTATTGGAGTTGCTGGC+TGG 0.370598 7:+44788424 MsG0780038347.01.T01:CDS
GTTGAATGATGACAGATTCA+TGG 0.374117 7:+44788273 MsG0780038347.01.T01:intron
AGTACTAAATATAGTGAGTT+GGG 0.377060 7:+44788296 MsG0780038347.01.T01:CDS
CACAGGAATGGTCGGGGCTC+AGG 0.388741 7:+44787748 MsG0780038347.01.T01:CDS
TTCCAACAACAAGGCGATTA+CGG 0.393261 7:-44788888 None:intergenic
ATTGTTGTTGTATCCATCAT+AGG 0.395815 7:-44788963 None:intergenic
TCTTGAATCCCGAAGAGAAA+TGG 0.409692 7:+44788831 MsG0780038347.01.T01:CDS
AAAGGGAGACTTAGCTTGAA+TGG 0.413946 7:+44788031 MsG0780038347.01.T01:CDS
GGCGGTTGGGTTTATTCCCC+AGG 0.416524 7:-44787726 None:intergenic
AGCCGTAATCGCCTTGTTGT+TGG 0.416639 7:+44788886 MsG0780038347.01.T01:CDS
CCGACCATTCCTGTGGCGGT+TGG 0.417194 7:-44787740 None:intergenic
GTACCTAATCTAAATTCAAA+AGG 0.418469 7:+44788013 MsG0780038347.01.T01:CDS
GAATGATGATGATGCCCCTT+TGG 0.436006 7:+44788069 MsG0780038347.01.T01:CDS
AACTCCAACAAAACCTATGA+TGG 0.453679 7:+44788950 MsG0780038347.01.T01:CDS
CATTAAACCACCATCTTCCT+CGG 0.467486 7:-44787882 None:intergenic
CAACCGCCACAGGAATGGTC+GGG 0.468881 7:+44787741 MsG0780038347.01.T01:CDS
TGGGGAACTGGCTTGAAACT+TGG 0.473629 7:+44788444 MsG0780038347.01.T01:CDS
TTAATGGCGGTAACATTAAC+CGG 0.473751 7:-44787929 None:intergenic
TTCCATCAGCAGATCCGGCT+TGG 0.477903 7:+44788367 MsG0780038347.01.T01:CDS
ACTACTGAATTGAATCCCTT+CGG 0.478284 7:-44788475 None:intergenic
ATAGAAGAGTTATGATGAGT+TGG 0.479238 7:-44787357 None:intergenic
TCCAACCGCCTGAAGTTGGC+GGG 0.479652 7:-44787700 None:intergenic
ACATCAAAAGAAAGCTTCCC+AGG 0.480344 7:-44787845 None:intergenic
ATCATTCCCGCCGTTACAGA+GGG 0.486218 7:-44787971 None:intergenic
GTGGAGGAAGGAATTTAGTA+CGG 0.487290 7:-44787627 None:intergenic
ACAACAACAATGGACAAAAC+AGG 0.492141 7:+44788975 MsG0780038347.01.T01:CDS
TGACATGATTTATATGTGGA+TGG 0.493004 7:-44789005 None:intergenic
GATTATGAGGTTGAAATTGA+AGG 0.493489 7:-44787324 None:intergenic
GCAGAGGAAACATATATATC+CGG 0.495085 7:-44789240 None:intergenic
GTTGATTGTTACCTGTATAG+TGG 0.497165 7:-44788532 None:intergenic
TGGTGAAGTTAATGATTATG+AGG 0.499891 7:-44787337 None:intergenic
TATTATTGGAGTTGCTGGCT+GGG 0.502104 7:+44788425 MsG0780038347.01.T01:CDS
CAATAATATAAGCAGATAGT+TGG 0.502209 7:-44788410 None:intergenic
GCAATTGTCAACATATTCAA+AGG 0.503460 7:+44788800 MsG0780038347.01.T01:CDS
CCCCGCCAACTTCAGGCGGT+TGG 0.506442 7:+44787699 MsG0780038347.01.T01:CDS
ATTAACCATGTTTGGCAAGT+GGG 0.508572 7:+44787947 MsG0780038347.01.T01:CDS
TGGAGGAAGGAATTTAGTAC+GGG 0.511133 7:-44787626 None:intergenic
AACTAAGGACATGTAATATG+AGG 0.511854 7:-44787298 None:intergenic
GCAAGTGGGCCCCTCTGTAA+CGG 0.514858 7:+44787961 MsG0780038347.01.T01:CDS
ATTATGAGGTTGAAATTGAA+GGG 0.516023 7:-44787323 None:intergenic
ATTATTGGAGTTGCTGGCTG+GGG 0.516322 7:+44788426 MsG0780038347.01.T01:CDS
GATATCCAACCGCCTGAAGT+TGG 0.517033 7:-44787704 None:intergenic
TTCAGGCGGTTGGATATCCT+GGG 0.519689 7:+44787709 MsG0780038347.01.T01:CDS
CGCATCAAACTCCACCCTCT+CGG 0.522528 7:+44787661 MsG0780038347.01.T01:CDS
GGAATAAACCCAACCGCCAC+AGG 0.525863 7:+44787731 MsG0780038347.01.T01:CDS
GTGCTACATATAGAAAGAAC+GGG 0.528701 7:-44787266 None:intergenic
TACCTAATCTAAATTCAAAA+GGG 0.531467 7:+44788014 MsG0780038347.01.T01:CDS
TCTTGGTGACAAAATCCAAA+GGG 0.535929 7:-44788084 None:intergenic
GTGGGCCCCTCTGTAACGGC+GGG 0.537013 7:+44787965 MsG0780038347.01.T01:CDS
GGGTGGAGTTTGATGCGTCA+TGG 0.537609 7:-44787655 None:intergenic
TGAAATTGAAGGGAAAACTA+AGG 0.539167 7:-44787313 None:intergenic
GGTCGGGGCTCAGGTGATTG+TGG 0.541007 7:+44787757 MsG0780038347.01.T01:CDS
AACCAAGCCGGATCTGCTGA+TGG 0.541992 7:-44788369 None:intergenic
GACATGATTTATATGTGGAT+GGG 0.545248 7:-44789004 None:intergenic
CATTAACCATGTTTGGCAAG+TGG 0.546091 7:+44787946 MsG0780038347.01.T01:CDS
GAGTACTAAATATAGTGAGT+TGG 0.547341 7:+44788295 MsG0780038347.01.T01:CDS
TGAATATGTTGACAATTGCA+AGG 0.548153 7:-44788796 None:intergenic
TCTTGCTATGATAACTCCAA+GGG 0.550115 7:-44788331 None:intergenic
ACGGGGAGGTCTATGCACTT+TGG 0.552339 7:-44787608 None:intergenic
ATCTTGCTATGATAACTCCA+AGG 0.555966 7:-44788332 None:intergenic
CCAACCGCCACAGGAATGGT+CGG 0.558340 7:+44787740 MsG0780038347.01.T01:CDS
ATCCAACCGCCTGAAGTTGG+CGG 0.559379 7:-44787701 None:intergenic
CTGTTGACATGATTTATATG+TGG 0.559750 7:-44789009 None:intergenic
GTTGAACCTTAAATCGTACA+AGG 0.563545 7:+44787814 MsG0780038347.01.T01:CDS
AAACCCAACCGCCACAGGAA+TGG 0.563803 7:+44787736 MsG0780038347.01.T01:CDS
GGTGGAGTTTGATGCGTCAT+GGG 0.565068 7:-44787654 None:intergenic
AGTGGGCCCCTCTGTAACGG+CGG 0.565714 7:+44787964 MsG0780038347.01.T01:CDS
TTCTTGGTGACAAAATCCAA+AGG 0.570034 7:-44788085 None:intergenic
GTATAGTGGCGAGACAAAAG+AGG 0.572704 7:-44788518 None:intergenic
AGCCCCGACCATTCCTGTGG+CGG 0.573101 7:-44787744 None:intergenic
AATCATTCCCGCCGTTACAG+AGG 0.583815 7:-44787972 None:intergenic
TATGATGGATACAACAACAA+TGG 0.586524 7:+44788965 MsG0780038347.01.T01:CDS
ATTGTTCCTAAGGCCAAACA+AGG 0.588972 7:+44788712 MsG0780038347.01.T01:CDS
AGTGCTACATATAGAAAGAA+CGG 0.591339 7:-44787267 None:intergenic
TTGATGCGTCATGGGTGTAG+TGG 0.596703 7:-44787646 None:intergenic
GCGACCCCGCCAACTTCAGG+CGG 0.599451 7:+44787695 MsG0780038347.01.T01:CDS
AAACTTGGAAGTGAATCCGA+AGG 0.605011 7:+44788459 MsG0780038347.01.T01:CDS
AACCGCCACAGGAATGGTCG+GGG 0.607404 7:+44787742 MsG0780038347.01.T01:CDS
GATATGAAAGCCGAGGAAGA+TGG 0.609013 7:+44787872 MsG0780038347.01.T01:CDS
AACGAAGACCACCGAGAGGG+TGG 0.609439 7:-44787672 None:intergenic
TTAGGTACATTAAAATCATG+TGG 0.613052 7:-44787998 None:intergenic
AGGGGCCCACTTGCCAAACA+TGG 0.615006 7:-44787952 None:intergenic
TGTTGTTGGAAGCAATCACA+TGG 0.622162 7:+44788900 MsG0780038347.01.T01:CDS
CTGAGCCCCGACCATTCCTG+TGG 0.624892 7:-44787747 None:intergenic
GTCATGGGTGTAGTGGAGGA+AGG 0.625368 7:-44787639 None:intergenic
AACTTGGAAGTGAATCCGAA+GGG 0.625878 7:+44788460 MsG0780038347.01.T01:CDS
GTACTAAATATAGTGAGTTG+GGG 0.632670 7:+44788297 MsG0780038347.01.T01:CDS
CCAACCGCCTGAAGTTGGCG+GGG 0.638533 7:-44787699 None:intergenic
TATAGTGGCGAGACAAAAGA+GGG 0.643075 7:-44788517 None:intergenic
TGTGATTGCTTCCAACAACA+AGG 0.644271 7:-44788897 None:intergenic
ATGCGTCATGGGTGTAGTGG+AGG 0.647222 7:-44787643 None:intergenic
ATATGAATATAGAACCAAGC+CGG 0.652651 7:-44788381 None:intergenic
CGCAACGAAGACCACCGAGA+GGG 0.665305 7:-44787675 None:intergenic
ATCAAACTCCACCCTCTCGG+TGG 0.666299 7:+44787664 MsG0780038347.01.T01:CDS
ATGAAAGCCGAGGAAGATGG+TGG 0.669980 7:+44787875 MsG0780038347.01.T01:CDS
CTTGCTATGATAACTCCAAG+GGG 0.687532 7:-44788330 None:intergenic
TTGCCAAACATGGTTAATGG+CGG 0.701357 7:-44787942 None:intergenic
GGAAGGAATTTAGTACGGGG+AGG 0.715490 7:-44787622 None:intergenic
CTTGGTGACAAAATCCAAAG+GGG 0.716208 7:-44788083 None:intergenic
TCAGGCGGTTGGATATCCTG+GGG 0.716265 7:+44787710 MsG0780038347.01.T01:CDS
TCATTCCCGCCGTTACAGAG+GGG 0.718003 7:-44787970 None:intergenic
ATTAACCGGAACCTTAACGG+TGG 0.745250 7:-44787915 None:intergenic
GGAGGAAGGAATTTAGTACG+GGG 0.749729 7:-44787625 None:intergenic
TGTTTGGGATATGAAAGCCG+AGG 0.752643 7:+44787865 MsG0780038347.01.T01:CDS
TCGCAACGAAGACCACCGAG+AGG 0.754405 7:-44787676 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCAAAATTGAAACATAAA+AGG - Chr7:44788180-44788199 None:intergenic 15.0%
!!! TAGTCTTATTTTTAGAAAAT+AGG + Chr7:44788148-44788167 MsG0780038347.01.T01:intron 15.0%
!!! TTTTTTTTTTCCACTTTTTT+TGG + Chr7:44789090-44789109 MsG0780038347.01.T01:three_prime_UTR 15.0%
!! AAAAATAGTACCAAAAAAAG+TGG - Chr7:44789103-44789122 None:intergenic 20.0%
!! AATATCTATCATTATAGCTT+TGG + Chr7:44788758-44788777 MsG0780038347.01.T01:CDS 20.0%
!! TACCTAATCTAAATTCAAAA+GGG + Chr7:44788014-44788033 MsG0780038347.01.T01:CDS 20.0%
!!! ATCACAAATATAGATTTTAC+TGG + Chr7:44788735-44788754 MsG0780038347.01.T01:CDS 20.0%
!!! CAAATATTATTGTTTTCCTT+AGG - Chr7:44787207-44787226 None:intergenic 20.0%
! AAAAAAATCCAATCAAGAGA+AGG - Chr7:44789077-44789096 None:intergenic 25.0%
! AAAATCTGCAAAATACAATC+AGG - Chr7:44788689-44788708 None:intergenic 25.0%
! AGTACTAAATATAGTGAGTT+GGG + Chr7:44788296-44788315 MsG0780038347.01.T01:CDS 25.0%
! ATGTTCAACTCAAAAACTAA+CGG + Chr7:44787571-44787590 MsG0780038347.01.T01:CDS 25.0%
! ATTATGAGGTTGAAATTGAA+GGG - Chr7:44787326-44787345 None:intergenic 25.0%
! ATTTAAAAACAATACGGTGA+TGG + Chr7:44787781-44787800 MsG0780038347.01.T01:CDS 25.0%
! CAACTATCTGCTTATATTAT+TGG + Chr7:44788411-44788430 MsG0780038347.01.T01:CDS 25.0%
! CAATAATATAAGCAGATAGT+TGG - Chr7:44788413-44788432 None:intergenic 25.0%
! GTACCTAATCTAAATTCAAA+AGG + Chr7:44788013-44788032 MsG0780038347.01.T01:CDS 25.0%
! TAAAAACCTTGTACGATTTA+AGG - Chr7:44787823-44787842 None:intergenic 25.0%
! TCTATTAAAGCCACAAAAAA+CGG + Chr7:44787375-44787394 MsG0780038347.01.T01:five_prime_UTR 25.0%
! TGTGGCATTTAAAAACAATA+CGG + Chr7:44787775-44787794 MsG0780038347.01.T01:CDS 25.0%
! TTAGGTACATTAAAATCATG+TGG - Chr7:44788001-44788020 None:intergenic 25.0%
!! AAAACTCACATTTTTCTTCT+TGG - Chr7:44788104-44788123 None:intergenic 25.0%
!! CTTCTTTTCAAAGAAAAAGA+GGG - Chr7:44788214-44788233 None:intergenic 25.0%
!! TCTTCTTTTCAAAGAAAAAG+AGG - Chr7:44788215-44788234 None:intergenic 25.0%
!!! AAGTTAAAGCCATTGTTTTT+AGG - Chr7:44787493-44787512 None:intergenic 25.0%
!!! ATATGTTTTTGTGAAATGCT+TGG + Chr7:44789124-44789143 MsG0780038347.01.T01:three_prime_UTR 25.0%
!!! GTTTCATAGTGTTTTGTTTT+AGG + Chr7:44789146-44789165 MsG0780038347.01.T01:three_prime_UTR 25.0%
AACTAAGGACATGTAATATG+AGG - Chr7:44787301-44787320 None:intergenic 30.0%
AATTTAACCATGCTGTACTT+TGG - Chr7:44788615-44788634 None:intergenic 30.0%
AGCTAATTTCCATTTCTCTT+CGG - Chr7:44788843-44788862 None:intergenic 30.0%
AGTGCTACATATAGAAAGAA+CGG - Chr7:44787270-44787289 None:intergenic 30.0%
ATAGAAGAGTTATGATGAGT+TGG - Chr7:44787360-44787379 None:intergenic 30.0%
ATATGAATATAGAACCAAGC+CGG - Chr7:44788384-44788403 None:intergenic 30.0%
ATCATCATTCCCAAAATCTT+TGG - Chr7:44788059-44788078 None:intergenic 30.0%
CTATATTTGTGATCCTTGTT+TGG - Chr7:44788728-44788747 None:intergenic 30.0%
CTGTTGACATGATTTATATG+TGG - Chr7:44789012-44789031 None:intergenic 30.0%
GACATGATTTATATGTGGAT+GGG - Chr7:44789007-44789026 None:intergenic 30.0%
GAGTACTAAATATAGTGAGT+TGG + Chr7:44788295-44788314 MsG0780038347.01.T01:CDS 30.0%
GATTATGAGGTTGAAATTGA+AGG - Chr7:44787327-44787346 None:intergenic 30.0%
GCAATTGTCAACATATTCAA+AGG + Chr7:44788800-44788819 MsG0780038347.01.T01:CDS 30.0%
GTACTAAATATAGTGAGTTG+GGG + Chr7:44788297-44788316 MsG0780038347.01.T01:CDS 30.0%
TGAAATTGAAGGGAAAACTA+AGG - Chr7:44787316-44787335 None:intergenic 30.0%
TGAATATGTTGACAATTGCA+AGG - Chr7:44788799-44788818 None:intergenic 30.0%
TGACATGATTTATATGTGGA+TGG - Chr7:44789008-44789027 None:intergenic 30.0%
TGGTGAAGTTAATGATTATG+AGG - Chr7:44787340-44787359 None:intergenic 30.0%
TGTTCAACTCAAAAACTAAC+GGG + Chr7:44787572-44787591 MsG0780038347.01.T01:CDS 30.0%
TTCAGTAGTCATCGTAATAT+TGG + Chr7:44788489-44788508 MsG0780038347.01.T01:CDS 30.0%
TTCTTCCTTCCTAAAAACAA+TGG + Chr7:44787481-44787500 MsG0780038347.01.T01:exon 30.0%
! AGATTTTTGCATTGTTCCTA+AGG + Chr7:44788702-44788721 MsG0780038347.01.T01:intron 30.0%
! AGTGAAAGTTTTACTATGCT+TGG + Chr7:44789213-44789232 MsG0780038347.01.T01:three_prime_UTR 30.0%
! ATTGTTGTTGTATCCATCAT+AGG - Chr7:44788966-44788985 None:intergenic 30.0%
! CTCCCTTTTGAATTTAGATT+AGG - Chr7:44788019-44788038 None:intergenic 30.0%
! GAAGCTTTCTTTTGATGTTT+GGG + Chr7:44787850-44787869 MsG0780038347.01.T01:CDS 30.0%
! GTGAAAGTTTTACTATGCTT+GGG + Chr7:44789214-44789233 MsG0780038347.01.T01:three_prime_UTR 30.0%
! TCTTTGAAAAGAAGAGAGTT+GGG + Chr7:44788220-44788239 MsG0780038347.01.T01:intron 30.0%
! TTCTTTGAAAAGAAGAGAGT+TGG + Chr7:44788219-44788238 MsG0780038347.01.T01:intron 30.0%
!! GCTTGGTTCTATATTCATAT+TGG + Chr7:44788384-44788403 MsG0780038347.01.T01:CDS 30.0%
!! TATGATGGATACAACAACAA+TGG + Chr7:44788965-44788984 MsG0780038347.01.T01:CDS 30.0%
!!! TAAAGCCATTGTTTTTAGGA+AGG - Chr7:44787489-44787508 None:intergenic 30.0%
!!! TGTGTTTTTTCCGTTTTTTG+TGG - Chr7:44787388-44787407 None:intergenic 30.0%
!!! TTTTTGAGTTGAACATGTGA+GGG - Chr7:44787567-44787586 None:intergenic 30.0%
AAAAACACACACACACACAT+TGG + Chr7:44787399-44787418 MsG0780038347.01.T01:five_prime_UTR 35.0%
AACATTAACCGGAACCTTAA+CGG - Chr7:44787921-44787940 None:intergenic 35.0%
AACTCCAACAAAACCTATGA+TGG + Chr7:44788950-44788969 MsG0780038347.01.T01:CDS 35.0%
ACAACAACAATGGACAAAAC+AGG + Chr7:44788975-44788994 MsG0780038347.01.T01:CDS 35.0%
ACTACTGAATTGAATCCCTT+CGG - Chr7:44788478-44788497 None:intergenic 35.0%
ATCTGCAAAATACAATCAGG+AGG - Chr7:44788686-44788705 None:intergenic 35.0%
ATTAACCATGTTTGGCAAGT+GGG + Chr7:44787947-44787966 MsG0780038347.01.T01:CDS 35.0%
GCTAATTTCCATTTCTCTTC+GGG - Chr7:44788842-44788861 None:intergenic 35.0%
GCTTATATTATTGGAGTTGC+TGG + Chr7:44788420-44788439 MsG0780038347.01.T01:CDS 35.0%
GGAGAAAATGTTACTACAAG+TGG - Chr7:44788647-44788666 None:intergenic 35.0%
GTGCTACATATAGAAAGAAC+GGG - Chr7:44787269-44787288 None:intergenic 35.0%
GTTGAACCTTAAATCGTACA+AGG + Chr7:44787814-44787833 MsG0780038347.01.T01:CDS 35.0%
GTTGAATGATGACAGATTCA+TGG + Chr7:44788273-44788292 MsG0780038347.01.T01:intron 35.0%
GTTGATTGTTACCTGTATAG+TGG - Chr7:44788535-44788554 None:intergenic 35.0%
TTAATGGCGGTAACATTAAC+CGG - Chr7:44787932-44787951 None:intergenic 35.0%
TTCAAATCCAAAGTACAGCA+TGG + Chr7:44788605-44788624 MsG0780038347.01.T01:intron 35.0%
TTGCAATACCTTCTCTTGAT+TGG + Chr7:44789066-44789085 MsG0780038347.01.T01:three_prime_UTR 35.0%
! AATTTTTCCATCAGCAGATC+CGG + Chr7:44788362-44788381 MsG0780038347.01.T01:CDS 35.0%
! ATCTTGCTATGATAACTCCA+AGG - Chr7:44788335-44788354 None:intergenic 35.0%
! CGTACAAGGTTTTTATTCCT+GGG + Chr7:44787828-44787847 MsG0780038347.01.T01:CDS 35.0%
! CTTTGAAAAGAAGAGAGTTG+GGG + Chr7:44788221-44788240 MsG0780038347.01.T01:intron 35.0%
! GGAAGCTTTCTTTTGATGTT+TGG + Chr7:44787849-44787868 MsG0780038347.01.T01:CDS 35.0%
! TCGTACAAGGTTTTTATTCC+TGG + Chr7:44787827-44787846 MsG0780038347.01.T01:CDS 35.0%
! TCTTGCTATGATAACTCCAA+GGG - Chr7:44788334-44788353 None:intergenic 35.0%
! TCTTGGTGACAAAATCCAAA+GGG - Chr7:44788087-44788106 None:intergenic 35.0%
! TGAATGGAGCCAAAGATTTT+GGG + Chr7:44788047-44788066 MsG0780038347.01.T01:CDS 35.0%
! TTCTTGGTGACAAAATCCAA+AGG - Chr7:44788088-44788107 None:intergenic 35.0%
! TTGAATGGAGCCAAAGATTT+TGG + Chr7:44788046-44788065 MsG0780038347.01.T01:CDS 35.0%
! TTTTACTATGCTTGGGTTTC+CGG + Chr7:44789221-44789240 MsG0780038347.01.T01:three_prime_UTR 35.0%
!! GTATCCATCATAGGTTTTGT+TGG - Chr7:44788957-44788976 None:intergenic 35.0%
!!! GTTTTTGAGTTGAACATGTG+AGG - Chr7:44787568-44787587 None:intergenic 35.0%
AAACTTGGAAGTGAATCCGA+AGG + Chr7:44788459-44788478 MsG0780038347.01.T01:CDS 40.0%
AACTTGGAAGTGAATCCGAA+GGG + Chr7:44788460-44788479 MsG0780038347.01.T01:CDS 40.0%
ACATCAAAAGAAAGCTTCCC+AGG - Chr7:44787848-44787867 None:intergenic 40.0%
ATATTATTGGAGTTGCTGGC+TGG + Chr7:44788424-44788443 MsG0780038347.01.T01:CDS 40.0%
ATTGTTCCTAAGGCCAAACA+AGG + Chr7:44788712-44788731 MsG0780038347.01.T01:CDS 40.0%
CACTTGCCAAACATGGTTAA+TGG - Chr7:44787948-44787967 None:intergenic 40.0%
CATTAAACCACCATCTTCCT+CGG - Chr7:44787885-44787904 None:intergenic 40.0%
CATTAACCATGTTTGGCAAG+TGG + Chr7:44787946-44787965 MsG0780038347.01.T01:CDS 40.0%
CATTCTTTCACTTCTTCCTC+TGG + Chr7:44787453-44787472 MsG0780038347.01.T01:five_prime_UTR 40.0%
GTGGAGGAAGGAATTTAGTA+CGG - Chr7:44787630-44787649 None:intergenic 40.0%
TATAGTGGCGAGACAAAAGA+GGG - Chr7:44788520-44788539 None:intergenic 40.0%
TCTTGAATCCCGAAGAGAAA+TGG + Chr7:44788831-44788850 MsG0780038347.01.T01:CDS 40.0%
TGGAGGAAGGAATTTAGTAC+GGG - Chr7:44787629-44787648 None:intergenic 40.0%
TGTGATTGCTTCCAACAACA+AGG - Chr7:44788900-44788919 None:intergenic 40.0%
TGTTGTTGGAAGCAATCACA+TGG + Chr7:44788900-44788919 MsG0780038347.01.T01:CDS 40.0%
TTACCGCCATTAACCATGTT+TGG + Chr7:44787939-44787958 MsG0780038347.01.T01:CDS 40.0%
TTCCAACAACAAGGCGATTA+CGG - Chr7:44788891-44788910 None:intergenic 40.0%
TTGCCAAACATGGTTAATGG+CGG - Chr7:44787945-44787964 None:intergenic 40.0%
! AAAGGGAGACTTAGCTTGAA+TGG + Chr7:44788031-44788050 MsG0780038347.01.T01:CDS 40.0%
! CTTGCTATGATAACTCCAAG+GGG - Chr7:44788333-44788352 None:intergenic 40.0%
! CTTGGTGACAAAATCCAAAG+GGG - Chr7:44788086-44788105 None:intergenic 40.0%
! TATTATTGGAGTTGCTGGCT+GGG + Chr7:44788425-44788444 MsG0780038347.01.T01:CDS 40.0%
ATTAACCGGAACCTTAACGG+TGG - Chr7:44787918-44787937 None:intergenic 45.0%
GATATGAAAGCCGAGGAAGA+TGG + Chr7:44787872-44787891 MsG0780038347.01.T01:CDS 45.0%
GGAAGGAAGAAAAACACCAG+AGG - Chr7:44787472-44787491 None:intergenic 45.0%
GGAGGAAGGAATTTAGTACG+GGG - Chr7:44787628-44787647 None:intergenic 45.0%
GTATAGTGGCGAGACAAAAG+AGG - Chr7:44788521-44788540 None:intergenic 45.0%
! ATTATTGGAGTTGCTGGCTG+GGG + Chr7:44788426-44788445 MsG0780038347.01.T01:CDS 45.0%
! CTTTTGTCTCGCCACTATAC+AGG + Chr7:44788521-44788540 MsG0780038347.01.T01:CDS 45.0%
! GAAGATTTTCGCCACCGTTA+AGG + Chr7:44787904-44787923 MsG0780038347.01.T01:CDS 45.0%
! GAATGATGATGATGCCCCTT+TGG + Chr7:44788069-44788088 MsG0780038347.01.T01:CDS 45.0%
! TGTGATCCTTGTTTGGCCTT+AGG - Chr7:44788721-44788740 None:intergenic 45.0%
! TGTTTGGGATATGAAAGCCG+AGG + Chr7:44787865-44787884 MsG0780038347.01.T01:CDS 45.0%
!! TGGGGTATTTTGTTTCCCCT+TGG + Chr7:44788315-44788334 MsG0780038347.01.T01:CDS 45.0%
AATCATTCCCGCCGTTACAG+AGG - Chr7:44787975-44787994 None:intergenic 50.0%
ATCATTCCCGCCGTTACAGA+GGG - Chr7:44787974-44787993 None:intergenic 50.0%
ATGAAAGCCGAGGAAGATGG+TGG + Chr7:44787875-44787894 MsG0780038347.01.T01:CDS 50.0%
GATATCCAACCGCCTGAAGT+TGG - Chr7:44787707-44787726 None:intergenic 50.0%
GGAAGGAATTTAGTACGGGG+AGG - Chr7:44787625-44787644 None:intergenic 50.0%
GGAGGACGAGCTCATCAAAA+CGG - Chr7:44788668-44788687 None:intergenic 50.0%
GGTGGAGTTTGATGCGTCAT+GGG - Chr7:44787657-44787676 None:intergenic 50.0%
TTCAGGCGGTTGGATATCCT+GGG + Chr7:44787709-44787728 MsG0780038347.01.T01:CDS 50.0%
TTGATGCGTCATGGGTGTAG+TGG - Chr7:44787649-44787668 None:intergenic 50.0%
TTTCGCCACCGTTAAGGTTC+CGG + Chr7:44787910-44787929 MsG0780038347.01.T01:CDS 50.0%
! AGCCGTAATCGCCTTGTTGT+TGG + Chr7:44788886-44788905 MsG0780038347.01.T01:CDS 50.0%
!! TGGGGAACTGGCTTGAAACT+TGG + Chr7:44788444-44788463 MsG0780038347.01.T01:CDS 50.0%
AAACCCAACCGCCACAGGAA+TGG + Chr7:44787736-44787755 MsG0780038347.01.T01:CDS 55.0%
AACCAAGCCGGATCTGCTGA+TGG - Chr7:44788372-44788391 None:intergenic 55.0%
ACGGGGAGGTCTATGCACTT+TGG - Chr7:44787611-44787630 None:intergenic 55.0%
ATCAAACTCCACCCTCTCGG+TGG + Chr7:44787664-44787683 MsG0780038347.01.T01:CDS 55.0%
ATCCAACCGCCTGAAGTTGG+CGG - Chr7:44787704-44787723 None:intergenic 55.0%
ATGCGTCATGGGTGTAGTGG+AGG - Chr7:44787646-44787665 None:intergenic 55.0%
CGCATCAAACTCCACCCTCT+CGG + Chr7:44787661-44787680 MsG0780038347.01.T01:CDS 55.0%
CTTCAGGCGGTTGGATATCC+TGG + Chr7:44787708-44787727 MsG0780038347.01.T01:CDS 55.0%
GGAATAAACCCAACCGCCAC+AGG + Chr7:44787731-44787750 MsG0780038347.01.T01:CDS 55.0%
GGGTGGAGTTTGATGCGTCA+TGG - Chr7:44787658-44787677 None:intergenic 55.0%
TCAGGCGGTTGGATATCCTG+GGG + Chr7:44787710-44787729 MsG0780038347.01.T01:CDS 55.0%
TCATTCCCGCCGTTACAGAG+GGG - Chr7:44787973-44787992 None:intergenic 55.0%
TTCCATCAGCAGATCCGGCT+TGG + Chr7:44788367-44788386 MsG0780038347.01.T01:CDS 55.0%
! GTCATGGGTGTAGTGGAGGA+AGG - Chr7:44787642-44787661 None:intergenic 55.0%
AACCGCCACAGGAATGGTCG+GGG + Chr7:44787742-44787761 MsG0780038347.01.T01:CDS 60.0%
AACGAAGACCACCGAGAGGG+TGG - Chr7:44787675-44787694 None:intergenic 60.0%
AGGGGCCCACTTGCCAAACA+TGG - Chr7:44787955-44787974 None:intergenic 60.0%
CAACCGCCACAGGAATGGTC+GGG + Chr7:44787741-44787760 MsG0780038347.01.T01:CDS 60.0%
CCAACCGCCACAGGAATGGT+CGG + Chr7:44787740-44787759 MsG0780038347.01.T01:CDS 60.0%
CGACCATTCCTGTGGCGGTT+GGG - Chr7:44787742-44787761 None:intergenic 60.0%
CGCAACGAAGACCACCGAGA+GGG - Chr7:44787678-44787697 None:intergenic 60.0%
GCAAGTGGGCCCCTCTGTAA+CGG + Chr7:44787961-44787980 MsG0780038347.01.T01:CDS 60.0%
GGCGGTTGGGTTTATTCCCC+AGG - Chr7:44787729-44787748 None:intergenic 60.0%
TCCAACCGCCTGAAGTTGGC+GGG - Chr7:44787703-44787722 None:intergenic 60.0%
TCGCAACGAAGACCACCGAG+AGG - Chr7:44787679-44787698 None:intergenic 60.0%
AGCCCCGACCATTCCTGTGG+CGG - Chr7:44787747-44787766 None:intergenic 65.0%
AGTGGGCCCCTCTGTAACGG+CGG + Chr7:44787964-44787983 MsG0780038347.01.T01:CDS 65.0%
CACAGGAATGGTCGGGGCTC+AGG + Chr7:44787748-44787767 MsG0780038347.01.T01:CDS 65.0%
CCAACCGCCTGAAGTTGGCG+GGG - Chr7:44787702-44787721 None:intergenic 65.0%
CCGACCATTCCTGTGGCGGT+TGG - Chr7:44787743-44787762 None:intergenic 65.0%
CTGAGCCCCGACCATTCCTG+TGG - Chr7:44787750-44787769 None:intergenic 65.0%
GGTCGGGGCTCAGGTGATTG+TGG + Chr7:44787757-44787776 MsG0780038347.01.T01:CDS 65.0%
GTTGCGACCCCGCCAACTTC+AGG + Chr7:44787692-44787711 MsG0780038347.01.T01:CDS 65.0%
! GGAGTTGCTGGCTGGGGAAC+TGG + Chr7:44788432-44788451 MsG0780038347.01.T01:CDS 65.0%
CCCCGCCAACTTCAGGCGGT+TGG + Chr7:44787699-44787718 MsG0780038347.01.T01:CDS 70.0%
GCGACCCCGCCAACTTCAGG+CGG + Chr7:44787695-44787714 MsG0780038347.01.T01:CDS 70.0%
GTGGGCCCCTCTGTAACGGC+GGG + Chr7:44787965-44787984 MsG0780038347.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 44787207 44789258 44787207 ID=MsG0780038347.01;Name=MsG0780038347.01
Chr7 mRNA 44787207 44789258 44787207 ID=MsG0780038347.01.T01;Parent=MsG0780038347.01;Name=MsG0780038347.01.T01;_AED=0.48;_eAED=0.48;_QI=293|1|1|1|1|1|3|240|394
Chr7 exon 44787207 44788114 44787207 ID=MsG0780038347.01.T01:exon:4014;Parent=MsG0780038347.01.T01
Chr7 exon 44788288 44788542 44788288 ID=MsG0780038347.01.T01:exon:4015;Parent=MsG0780038347.01.T01
Chr7 exon 44788704 44789258 44788704 ID=MsG0780038347.01.T01:exon:4016;Parent=MsG0780038347.01.T01
Chr7 five_prime_UTR 44787207 44787499 44787207 ID=MsG0780038347.01.T01:five_prime_utr;Parent=MsG0780038347.01.T01
Chr7 CDS 44787500 44788114 44787500 ID=MsG0780038347.01.T01:cds;Parent=MsG0780038347.01.T01
Chr7 CDS 44788288 44788542 44788288 ID=MsG0780038347.01.T01:cds;Parent=MsG0780038347.01.T01
Chr7 CDS 44788704 44789018 44788704 ID=MsG0780038347.01.T01:cds;Parent=MsG0780038347.01.T01
Chr7 three_prime_UTR 44789019 44789258 44789019 ID=MsG0780038347.01.T01:three_prime_utr;Parent=MsG0780038347.01.T01
Gene Sequence

>MsG0780038347.01.T01

ATGGCTTTAACTTCAATTTCATTTCTCTTTTTTCTTCTATCTATGTTTTCAGCAACAGTTTCATCCCTCACATGTTCAACTCAAAAACTAACGGGAACAAAAGTCTATCCAAAGTGCATAGACCTCCCCGTACTAAATTCCTTCCTCCACTACACCCATGACGCATCAAACTCCACCCTCTCGGTGGTCTTCGTTGCGACCCCGCCAACTTCAGGCGGTTGGATATCCTGGGGAATAAACCCAACCGCCACAGGAATGGTCGGGGCTCAGGTGATTGTGGCATTTAAAAACAATACGGTGATGGCGATGAAAACGTTGAACCTTAAATCGTACAAGGTTTTTATTCCTGGGAAGCTTTCTTTTGATGTTTGGGATATGAAAGCCGAGGAAGATGGTGGTTTAATGAAGATTTTCGCCACCGTTAAGGTTCCGGTTAATGTTACCGCCATTAACCATGTTTGGCAAGTGGGCCCCTCTGTAACGGCGGGAATGATTGCTCCACATGATTTTAATGTACCTAATCTAAATTCAAAAGGGAGACTTAGCTTGAATGGAGCCAAAGATTTTGGGAATGATGATGATGCCCCTTTGGATTTTGTCACCAAGAAGAAAAATATTCATGGAGTACTAAATATAGTGAGTTGGGGTATTTTGTTTCCCCTTGGAGTTATCATAGCAAGATATATGAAAATTTTTCCATCAGCAGATCCGGCTTGGTTCTATATTCATATTGGTTGCCAACTATCTGCTTATATTATTGGAGTTGCTGGCTGGGGAACTGGCTTGAAACTTGGAAGTGAATCCGAAGGGATTCAATTCAGTAGTCATCGTAATATTGGAATTACCCTCTTTTGTCTCGCCACTATACAGATTTTTGCATTGTTCCTAAGGCCAAACAAGGATCACAAATATAGATTTTACTGGAATATCTATCATTATAGCTTTGGATACGCTATAATTATCCTTGCAATTGTCAACATATTCAAAGGCTTTGATATCTTGAATCCCGAAGAGAAATGGAAATTAGCTTACATTATATTGATTATTGCGTTAGCCGTAATCGCCTTGTTGTTGGAAGCAATCACATGGAGTGTTGTATTGAAGAGAAATCGTAAAAACTCCAACAAAACCTATGATGGATACAACAACAATGGACAAAACAGGCAACAACCCATCCACATATAA
Protein sequence

>MsG0780038347.01.T01

MALTSISFLFFLLSMFSATVSSLTCSTQKLTGTKVYPKCIDLPVLNSFLHYTHDASNSTLSVVFVATPPTSGGWISWGINPTATGMVGAQVIVAFKNNTVMAMKTLNLKSYKVFIPGKLSFDVWDMKAEEDGGLMKIFATVKVPVNVTAINHVWQVGPSVTAGMIAPHDFNVPNLNSKGRLSLNGAKDFGNDDDAPLDFVTKKKNIHGVLNIVSWGILFPLGVIIARYMKIFPSADPAWFYIHIGCQLSAYIIGVAGWGTGLKLGSESEGIQFSSHRNIGITLFCLATIQIFALFLRPNKDHKYRFYWNIYHYSFGYAIIILAIVNIFKGFDILNPEEKWKLAYIILIIALAVIALLLEAITWSVVLKRNRKNSNKTYDGYNNNGQNRQQPIHI*