AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038631.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038631.01.T01 MTR_7g058930 99.667 300 1 0 1 300 1 300 0.0 610
MsG0780038631.01.T01 MTR_7g059010 76.491 285 67 0 16 300 11 295 8.15e-163 454
MsG0780038631.01.T01 MTR_7g059010 76.140 285 68 0 16 300 28 312 9.71e-160 451
MsG0780038631.01.T01 MTR_8g075260 59.402 234 91 1 20 249 32 265 1.75e-96 293
MsG0780038631.01.T01 MTR_2g030510 55.274 237 103 1 20 253 47 283 4.69e-86 270
MsG0780038631.01.T02 MTR_7g058930 99.667 300 1 0 1 300 1 300 0.0 610
MsG0780038631.01.T02 MTR_7g059010 76.491 285 67 0 16 300 11 295 8.15e-163 454
MsG0780038631.01.T02 MTR_7g059010 76.140 285 68 0 16 300 28 312 9.71e-160 451
MsG0780038631.01.T02 MTR_8g075260 59.402 234 91 1 20 249 32 265 1.75e-96 293
MsG0780038631.01.T02 MTR_2g030510 55.274 237 103 1 20 253 47 283 4.69e-86 270
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038631.01.T01 AT5G48850 63.514 296 101 3 10 300 13 306 3.25e-133 380
MsG0780038631.01.T01 AT1G04770 61.458 288 96 5 24 300 20 303 3.00e-122 352
MsG0780038631.01.T01 AT3G51280 60.494 243 91 2 11 249 18 259 1.23e-97 294
MsG0780038631.01.T01 AT4G20900 52.697 241 110 1 16 252 43 283 5.77e-83 257
MsG0780038631.01.T01 AT4G20900 49.416 257 110 2 16 252 43 299 1.34e-78 246
MsG0780038631.01.T01 AT5G44330 48.361 244 121 2 28 266 48 291 4.49e-72 229
MsG0780038631.01.T01 AT5G22794 65.672 67 23 0 101 167 71 137 4.75e-22 92.8
MsG0780038631.01.T01 AT5G22794 55.224 67 23 1 101 167 71 130 3.84e-15 73.2
MsG0780038631.01.T02 AT5G48850 63.514 296 101 3 10 300 13 306 3.25e-133 380
MsG0780038631.01.T02 AT1G04770 61.458 288 96 5 24 300 20 303 3.00e-122 352
MsG0780038631.01.T02 AT3G51280 60.494 243 91 2 11 249 18 259 1.23e-97 294
MsG0780038631.01.T02 AT4G20900 52.697 241 110 1 16 252 43 283 5.77e-83 257
MsG0780038631.01.T02 AT4G20900 49.416 257 110 2 16 252 43 299 1.34e-78 246
MsG0780038631.01.T02 AT5G44330 48.361 244 121 2 28 266 48 291 4.49e-72 229
MsG0780038631.01.T02 AT5G22794 65.672 67 23 0 101 167 71 137 4.75e-22 92.8
MsG0780038631.01.T02 AT5G22794 55.224 67 23 1 101 167 71 130 3.84e-15 73.2

Find 36 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATGTCCATTGGATATTT+TGG 0.119785 7:-50176689 MsG0780038631.01.T01:CDS
TGCAACAAAGCATGTAATTT+AGG 0.247792 7:-50176859 MsG0780038631.01.T01:CDS
ATAATTGATGATATATTAAA+AGG 0.267450 7:-50176793 MsG0780038631.01.T01:CDS
TGCAATCTGGATCGATCATT+TGG 0.281473 7:+50176878 None:intergenic
GAAGAAATCTCTTCAAATAT+TGG 0.308219 7:+50176592 None:intergenic
GGAAGTCTCTTTGATCTAAC+TGG 0.308498 7:+50176613 None:intergenic
TACTGAATTTGAAGCCAATA+TGG 0.311224 7:-50176372 MsG0780038631.01.T01:intron
GAAGATAGATATTGCCATAT+TGG 0.324533 7:+50176358 None:intergenic
TTACATGCTTTGTTGCAATC+TGG 0.369531 7:+50176865 None:intergenic
TAGAACAGTTGATGAATGAA+TGG 0.399710 7:-50176639 MsG0780038631.01.T01:CDS
TAGTACAGAACATGATGAAT+TGG 0.404934 7:-50176273 MsG0780038631.01.T01:three_prime_UTR
TGCACAGGGAAACTTGGGCT+GGG 0.416737 7:-50176953 MsG0780038631.01.T01:intron
GCAATCTGGATCGATCATTT+GGG 0.419818 7:+50176879 None:intergenic
ATGATATCAAGTCAAAGAAA+AGG 0.433262 7:-50176753 MsG0780038631.01.T01:CDS
CTAAAATTCATTGCACTACA+TGG 0.434820 7:+50176293 None:intergenic
ATCTTCATCGATTGACTCAT+GGG 0.453836 7:-50176341 MsG0780038631.01.T01:intron
TATCTTCATCGATTGACTCA+TGG 0.468600 7:-50176342 MsG0780038631.01.T01:intron
GGAAAGAGGTGTATAAGATA+AGG 0.469530 7:-50176446 MsG0780038631.01.T01:three_prime_UTR
TTGCACAGGGAAACTTGGGC+TGG 0.488571 7:-50176954 MsG0780038631.01.T01:intron
ATATTAAAAGGAGAACTTCC+AGG 0.490498 7:-50176781 MsG0780038631.01.T01:CDS
AGAACAGTTGATGAATGAAT+GGG 0.494163 7:-50176638 MsG0780038631.01.T01:CDS
TGATATCAAGTCAAAGAAAA+GGG 0.512059 7:-50176752 MsG0780038631.01.T01:CDS
GCTACCTACACCATGTCCAT+TGG 0.535286 7:-50176698 MsG0780038631.01.T01:CDS
ATGGATGATGAGTTCATCAA+AGG 0.547044 7:-50176664 MsG0780038631.01.T01:CDS
TCCATAACCAAAATATCCAA+TGG 0.557682 7:+50176682 None:intergenic
TGGATGATGAGTTCATCAAA+GGG 0.558199 7:-50176663 MsG0780038631.01.T01:CDS
GACGAACTACGTGATGGCCG+AGG 0.565529 7:-50176917 MsG0780038631.01.T01:CDS
GGCTTTCCGATACACTGCCT+CGG 0.585403 7:+50176900 None:intergenic
ATATCCAATGGACATGGTGT+AGG 0.599504 7:+50176694 None:intergenic
GACTTGATATCATCTGAACC+TGG 0.599947 7:+50176763 None:intergenic
TGATGGCCGAGGCAGTGTAT+CGG 0.602021 7:-50176906 MsG0780038631.01.T01:CDS
TAGACAAGCACGGTATGAAG+AGG 0.623521 7:-50176824 MsG0780038631.01.T01:CDS
ACCAAAATATCCAATGGACA+TGG 0.642301 7:+50176688 None:intergenic
TATGTCTCATTAGACAAGCA+CGG 0.651129 7:-50176834 MsG0780038631.01.T01:CDS
GCAAAAGACGAACTACGTGA+TGG 0.663366 7:-50176923 MsG0780038631.01.T01:CDS
GAACAGTTGATGAATGAATG+GGG 0.700064 7:-50176637 MsG0780038631.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAACAAATTATATAGTT+TGG - Chr7:50177238-50177257 MsG0780038631.01.T01:intron 10.0%
!! CATATTATATTGATATTATT+AGG + Chr7:50177881-50177900 None:intergenic 10.0%
!! TTAACAAAATTTAATGTATT+TGG + Chr7:50176966-50176985 None:intergenic 10.0%
!! TTATTTCAAAACAAAATAAA+GGG - Chr7:50179101-50179120 MsG0780038631.01.T01:intron 10.0%
!!! AATTTGTTTATAATTGTAAT+CGG - Chr7:50176919-50176938 MsG0780038631.01.T01:CDS 10.0%
!!! ATAATTGATGATATATTAAA+AGG - Chr7:50179774-50179793 MsG0780038631.01.T01:intron 10.0%
!! AATATAAAATAAAGTGATGT+GGG - Chr7:50178592-50178611 MsG0780038631.01.T01:CDS 15.0%
!! AGTACAATTACATATATTAT+TGG - Chr7:50179235-50179254 MsG0780038631.01.T01:intron 15.0%
!! ATTTGTTTATAATTGTAATC+GGG - Chr7:50176920-50176939 MsG0780038631.01.T01:CDS 15.0%
!! CTTATTTCAAAACAAAATAA+AGG - Chr7:50179100-50179119 MsG0780038631.01.T01:intron 15.0%
!! TAATATAAAATAAAGTGATG+TGG - Chr7:50178591-50178610 MsG0780038631.01.T01:CDS 15.0%
!!! ATAATTTGTTGAAATTCAAA+TGG - Chr7:50177569-50177588 MsG0780038631.01.T01:intron 15.0%
!!! GATTATAATTTTGATTCAAT+TGG - Chr7:50178166-50178185 MsG0780038631.01.T01:CDS 15.0%
!!! TCGTATCTTATTTTTTTAAA+AGG + Chr7:50178735-50178754 None:intergenic 15.0%
!! AAAAGCTTCATCTAATAAAA+TGG - Chr7:50176341-50176360 MsG0780038631.01.T01:intron 20.0%
!! ACATCAAATCATATTGAATA+AGG - Chr7:50178709-50178728 MsG0780038631.01.T01:intron 20.0%
!! ATACAATAGAAACTTAAAGA+TGG + Chr7:50179550-50179569 None:intergenic 20.0%
!! GAAAGATATATTTATAGTAC+TGG + Chr7:50176614-50176633 None:intergenic 20.0%
!! GAATTTCAACAAATTATAGA+GGG + Chr7:50177566-50177585 None:intergenic 20.0%
!! GTTTAGATAGATTTACATAA+AGG - Chr7:50177200-50177219 MsG0780038631.01.T01:intron 20.0%
!! TAACAAATTATATAGTTTGG+AGG - Chr7:50177241-50177260 MsG0780038631.01.T01:intron 20.0%
!! TAACTGTATATTAAAGTAAC+TGG + Chr7:50178984-50179003 None:intergenic 20.0%
!! TGAATTTCAACAAATTATAG+AGG + Chr7:50177567-50177586 None:intergenic 20.0%
!! TGGAACAAATATTATCTATA+AGG - Chr7:50178619-50178638 MsG0780038631.01.T01:CDS 20.0%
!! TTAAGTTTCTATTGTATACT+TGG - Chr7:50179553-50179572 MsG0780038631.01.T01:intron 20.0%
!! TTATTCAATATGATTTGATG+TGG + Chr7:50178710-50178729 None:intergenic 20.0%
!! TTTAAATTAACATTCTGCAA+AGG + Chr7:50178518-50178537 None:intergenic 20.0%
!!! AATTTCCACTCTAATTATTT+TGG + Chr7:50178903-50178922 None:intergenic 20.0%
!!! AATTTGTACATAGCTTTTTT+TGG - Chr7:50180032-50180051 MsG0780038631.01.T01:intron 20.0%
!!! AGGGTTTTATTTTCATTTTT+TGG - Chr7:50180100-50180119 MsG0780038631.01.T01:CDS 20.0%
!!! AGTTACTTTAATATACAGTT+AGG - Chr7:50178983-50179002 MsG0780038631.01.T01:intron 20.0%
!!! ATCTTTTCTATATGAGAATT+AGG + Chr7:50179267-50179286 None:intergenic 20.0%
!!! ATGCTTGTTAATTTTGATAA+TGG - Chr7:50177267-50177286 MsG0780038631.01.T01:intron 20.0%
!!! ATTTTGATCTACTTTTAACT+CGG + Chr7:50177060-50177079 None:intergenic 20.0%
!!! CTTAATTTTAATTGAAGACA+AGG + Chr7:50177712-50177731 None:intergenic 20.0%
!!! TAGTTCAAATCTACATTTTA+GGG + Chr7:50177341-50177360 None:intergenic 20.0%
!!! TATTTTCATTTTTTGGAAAG+AGG - Chr7:50180107-50180126 MsG0780038631.01.T01:CDS 20.0%
!!! TCTGACTTTCTTTTATATAT+AGG - Chr7:50176986-50177005 MsG0780038631.01.T01:intron 20.0%
!!! TTAATTGGTTCGATTTTAAA+TGG + Chr7:50177637-50177656 None:intergenic 20.0%
!!! TTAGTTCAAATCTACATTTT+AGG + Chr7:50177342-50177361 None:intergenic 20.0%
!!! TTTCTTTCTTTTTCATATAG+TGG - Chr7:50180077-50180096 MsG0780038631.01.T01:intron 20.0%
! AAAAGTGAGATATATAAGTG+AGG - Chr7:50177169-50177188 MsG0780038631.01.T01:intron 25.0%
! AAATCTAACCTAGAAAAGTA+TGG + Chr7:50179522-50179541 None:intergenic 25.0%
! AAGTCACACATTGAAATATA+AGG - Chr7:50179450-50179469 MsG0780038631.01.T01:intron 25.0%
! AATAAAATGGAAGAAGAAAG+AGG - Chr7:50176354-50176373 MsG0780038631.01.T01:intron 25.0%
! ACTAAAAATAATACCGTCTT+CGG - Chr7:50176724-50176743 MsG0780038631.01.T01:CDS 25.0%
! AGTATATGTTTATGTTCATC+AGG + Chr7:50177132-50177151 None:intergenic 25.0%
! ATGATATCAAGTCAAAGAAA+AGG - Chr7:50179814-50179833 MsG0780038631.01.T01:intron 25.0%
! ATTAGAGTGGAAATTTAAGA+TGG - Chr7:50178908-50178927 MsG0780038631.01.T01:intron 25.0%
! CATGTATAGTTAATATGTAG+TGG - Chr7:50177410-50177429 MsG0780038631.01.T01:intron 25.0%
! CATTTATCATGTACTTTACA+AGG - Chr7:50176425-50176444 MsG0780038631.01.T01:three_prime_UTR 25.0%
! GAAGAAATCTCTTCAAATAT+TGG + Chr7:50179978-50179997 None:intergenic 25.0%
! GCAAAAATGTTTAGATACAT+AGG + Chr7:50179597-50179616 None:intergenic 25.0%
! GCAAAAGAACTTGTAATTTA+AGG + Chr7:50177809-50177828 None:intergenic 25.0%
! TAACACCAAAATAATTAGAG+TGG - Chr7:50178895-50178914 MsG0780038631.01.T01:intron 25.0%
! TATAATTGTAATCGGGTATT+TGG - Chr7:50176927-50176946 MsG0780038631.01.T01:CDS 25.0%
! TATATTTCAATGTGTGACTT+GGG + Chr7:50179450-50179469 None:intergenic 25.0%
! TATCTATAAGGATCATAGTT+AGG - Chr7:50178631-50178650 MsG0780038631.01.T01:CDS 25.0%
! TGAAATATAAGGTATGACTA+GGG - Chr7:50179461-50179480 MsG0780038631.01.T01:intron 25.0%
! TGATATCAAGTCAAAGAAAA+GGG - Chr7:50179815-50179834 MsG0780038631.01.T01:intron 25.0%
! TGTACTAATTGATCTTTACA+AGG - Chr7:50178102-50178121 MsG0780038631.01.T01:intron 25.0%
! TGTATCATTAATCAAAGACA+AGG + Chr7:50176533-50176552 None:intergenic 25.0%
! TTATATCAAAGTCTATCGTT+CGG - Chr7:50179357-50179376 MsG0780038631.01.T01:intron 25.0%
! TTATATTTCAATGTGTGACT+TGG + Chr7:50179451-50179470 None:intergenic 25.0%
! TTGAAATATAAGGTATGACT+AGG - Chr7:50179460-50179479 MsG0780038631.01.T01:intron 25.0%
! TTTAATTGAAGACAAGGTTA+CGG + Chr7:50177706-50177725 None:intergenic 25.0%
! TTTCCAACACACTATTTAAT+TGG + Chr7:50177652-50177671 None:intergenic 25.0%
!! AAATTCAGTATACACTTTTG+AGG + Chr7:50180185-50180204 None:intergenic 25.0%
!! AAGCTGCAATTGTATTATTT+TGG - Chr7:50177930-50177949 MsG0780038631.01.T01:intron 25.0%
!! TATCTAAACATTTTTGCACA+GGG - Chr7:50179600-50179619 MsG0780038631.01.T01:intron 25.0%
!! TCAAATAAGTTTTTGTTCCT+CGG + Chr7:50177035-50177054 None:intergenic 25.0%
!! TGGAAATTTAAGATGGAATT+TGG - Chr7:50178915-50178934 MsG0780038631.01.T01:intron 25.0%
!! TTATTAGATGAAGCTTTTTG+AGG + Chr7:50176339-50176358 None:intergenic 25.0%
!!! AAATTAACTGCATTTTTTCC+TGG - Chr7:50177521-50177540 MsG0780038631.01.T01:intron 25.0%
!!! AAGAGTTTGTTGTTATCAAA+AGG - Chr7:50176390-50176409 MsG0780038631.01.T01:intron 25.0%
!!! AATTAACTGCATTTTTTCCT+GGG - Chr7:50177522-50177541 MsG0780038631.01.T01:intron 25.0%
!!! ACATAGCTTTTTTTGGATTA+TGG - Chr7:50180039-50180058 MsG0780038631.01.T01:intron 25.0%
!!! AGAGTTTGTTGTTATCAAAA+GGG - Chr7:50176391-50176410 MsG0780038631.01.T01:intron 25.0%
!!! TGAGTTTTGTACTTTAAGTA+GGG - Chr7:50179071-50179090 MsG0780038631.01.T01:intron 25.0%
!!! TTGAGTTTTGTACTTTAAGT+AGG - Chr7:50179070-50179089 MsG0780038631.01.T01:intron 25.0%
!!! TTTCTTTTTCATATAGTGGA+GGG - Chr7:50180081-50180100 MsG0780038631.01.T01:intron 25.0%
AATAATACAATTGCAGCTTC+CGG + Chr7:50177929-50177948 None:intergenic 30.0%
AATTGTGTAGCTAGTAGAAA+AGG - Chr7:50177901-50177920 MsG0780038631.01.T01:intron 30.0%
ACAAGAAACTTCAAGATTAC+TGG - Chr7:50178444-50178463 MsG0780038631.01.T01:intron 30.0%
ACATAGGTACAAACAAATCT+TGG + Chr7:50179581-50179600 None:intergenic 30.0%
ACTATACATGCAACAAAATC+TGG + Chr7:50177400-50177419 None:intergenic 30.0%
ATATAATACCTGAGCATGTT+TGG + Chr7:50176481-50176500 None:intergenic 30.0%
ATATTAAAAGGAGAACTTCC+AGG - Chr7:50179786-50179805 MsG0780038631.01.T01:intron 30.0%
CAATAGAAACTTAAAGATGG+AGG + Chr7:50179547-50179566 None:intergenic 30.0%
CGGGTATTTGGTTAAAAAAT+TGG - Chr7:50176939-50176958 MsG0780038631.01.T01:CDS 30.0%
CTAAAATTCATTGCACTACA+TGG + Chr7:50180277-50180296 None:intergenic 30.0%
CTTGTACATAAGAGAAAGTT+TGG - Chr7:50176758-50176777 MsG0780038631.01.T01:CDS 30.0%
CTTGTGAATGATAGAAATGT+GGG - Chr7:50178296-50178315 MsG0780038631.01.T01:intron 30.0%
CTTTGATTAGGGAAAACATT+TGG - Chr7:50176657-50176676 MsG0780038631.01.T01:CDS 30.0%
GAACCAATTAAATAGTGTGT+TGG - Chr7:50177646-50177665 MsG0780038631.01.T01:intron 30.0%
GAAGATAGATATTGCCATAT+TGG + Chr7:50180212-50180231 None:intergenic 30.0%
GAGATACTTGTAGTTTAAGT+CGG - Chr7:50178957-50178976 MsG0780038631.01.T01:intron 30.0%
GTATGGAAACAAACAAAACT+AGG + Chr7:50179505-50179524 None:intergenic 30.0%
GTTGTTATCAAAAGGGAAAA+AGG - Chr7:50176398-50176417 MsG0780038631.01.T01:three_prime_UTR 30.0%
TACATTATCAAGAGACTCTT+GGG + Chr7:50178086-50178105 None:intergenic 30.0%
TAGTACAGAACATGATGAAT+TGG - Chr7:50180294-50180313 MsG0780038631.01.T01:five_prime_UTR 30.0%
TCAAAACAAAATAAAGGGTG+TGG - Chr7:50179106-50179125 MsG0780038631.01.T01:intron 30.0%
TCCATAACCAAAATATCCAA+TGG + Chr7:50179888-50179907 None:intergenic 30.0%
TCTGTGAATAGATTCCATAT+GGG - Chr7:50178828-50178847 MsG0780038631.01.T01:intron 30.0%
TCTTGTGAATGATAGAAATG+TGG - Chr7:50178295-50178314 MsG0780038631.01.T01:intron 30.0%
TGCAACAAAGCATGTAATTT+AGG - Chr7:50179708-50179727 MsG0780038631.01.T01:intron 30.0%
TGTAGTGTATAATCATAACC+TGG + Chr7:50178776-50178795 None:intergenic 30.0%
TTCTGTGAATAGATTCCATA+TGG - Chr7:50178827-50178846 MsG0780038631.01.T01:intron 30.0%
TTGTAGACCAACTTTGATTA+GGG - Chr7:50176646-50176665 MsG0780038631.01.T01:CDS 30.0%
TTTGGAAAGCAATAAATGCA+GGG - Chr7:50177948-50177967 MsG0780038631.01.T01:intron 30.0%
! ATGTTTTCCCTAATCAAAGT+TGG + Chr7:50176656-50176675 None:intergenic 30.0%
! CATCTTAAGCTTGACTTTTA+AGG + Chr7:50178233-50178252 None:intergenic 30.0%
! GTAAGAAATTTGAGAGGTAT+AGG + Chr7:50177831-50177850 None:intergenic 30.0%
! GTATCTAAACATTTTTGCAC+AGG - Chr7:50179599-50179618 MsG0780038631.01.T01:intron 30.0%
! GTTTGTTTCCATACTTTTCT+AGG - Chr7:50179511-50179530 MsG0780038631.01.T01:intron 30.0%
! TACTGAATTTGAAGCCAATA+TGG - Chr7:50180195-50180214 MsG0780038631.01.T01:CDS 30.0%
!! AGAACAGTTGATGAATGAAT+GGG - Chr7:50179929-50179948 MsG0780038631.01.T01:intron 30.0%
!! CTTTCTTTTTCATATAGTGG+AGG - Chr7:50180080-50180099 MsG0780038631.01.T01:intron 30.0%
!! GATAATGGATTCAAGCAATT+TGG - Chr7:50177282-50177301 MsG0780038631.01.T01:intron 30.0%
!! TAGAACAGTTGATGAATGAA+TGG - Chr7:50179928-50179947 MsG0780038631.01.T01:intron 30.0%
!! TTTTGGAAAGCAATAAATGC+AGG - Chr7:50177947-50177966 MsG0780038631.01.T01:intron 30.0%
!!! ATATGTAGTGGTTTTGAATC+AGG - Chr7:50177422-50177441 MsG0780038631.01.T01:intron 30.0%
!!! TATGTAGTGGTTTTGAATCA+GGG - Chr7:50177423-50177442 MsG0780038631.01.T01:intron 30.0%
!!! TCCATTGGATATTTTGGTTA+TGG - Chr7:50179884-50179903 MsG0780038631.01.T01:intron 30.0%
AAGCTGAAATTGATCTACCA+AGG - Chr7:50178352-50178371 MsG0780038631.01.T01:intron 35.0%
AATAAAGTGATGTGGGACAA+TGG - Chr7:50178599-50178618 MsG0780038631.01.T01:CDS 35.0%
ACATAAGGACTATCACCATA+AGG + Chr7:50176453-50176472 None:intergenic 35.0%
ACCAAAATATCCAATGGACA+TGG + Chr7:50179882-50179901 None:intergenic 35.0%
AGCGTAAAGATCTGTTATAC+TGG - Chr7:50178198-50178217 MsG0780038631.01.T01:CDS 35.0%
ATAATACAATTGCAGCTTCC+GGG + Chr7:50177928-50177947 None:intergenic 35.0%
ATGGATGATGAGTTCATCAA+AGG - Chr7:50179903-50179922 MsG0780038631.01.T01:intron 35.0%
ATGGATTCAAGCAATTTGGA+TGG - Chr7:50177286-50177305 MsG0780038631.01.T01:intron 35.0%
ATTTGATCAAATTGCAGTCG+AGG + Chr7:50177505-50177524 None:intergenic 35.0%
CACTCAGTAAGAAATTTGAG+AGG + Chr7:50177837-50177856 None:intergenic 35.0%
CTTGTAGACCAACTTTGATT+AGG - Chr7:50176645-50176664 MsG0780038631.01.T01:CDS 35.0%
GTACATTATCAAGAGACTCT+TGG + Chr7:50178087-50178106 None:intergenic 35.0%
GTACTTTACAAGGTTCCTTA+TGG - Chr7:50176435-50176454 MsG0780038631.01.T01:three_prime_UTR 35.0%
TAAAGGTCCACCTACAAAAA+AGG - Chr7:50178857-50178876 MsG0780038631.01.T01:intron 35.0%
TATGTCTCATTAGACAAGCA+CGG - Chr7:50179733-50179752 MsG0780038631.01.T01:intron 35.0%
TCAGATGTAGTATATTTCCG+AGG - Chr7:50177015-50177034 MsG0780038631.01.T01:intron 35.0%
TCTGTTGATATAATACAGCC+AGG - Chr7:50178755-50178774 MsG0780038631.01.T01:intron 35.0%
TGGATCCCACTAAATTATGT+AGG - Chr7:50177589-50177608 MsG0780038631.01.T01:intron 35.0%
TGGATGATGAGTTCATCAAA+GGG - Chr7:50179904-50179923 MsG0780038631.01.T01:intron 35.0%
TTCCATATGGGTCCATTTAA+AGG - Chr7:50178840-50178859 MsG0780038631.01.T01:intron 35.0%
TTGGAAAGCAATAAATGCAG+GGG - Chr7:50177949-50177968 MsG0780038631.01.T01:intron 35.0%
TTTGTAGGTGGACCTTTAAA+TGG + Chr7:50178855-50178874 None:intergenic 35.0%
! ACCATGTCCATTGGATATTT+TGG - Chr7:50179878-50179897 MsG0780038631.01.T01:intron 35.0%
! ATCAAGTTTTACTCATCTCC+CGG - Chr7:50179144-50179163 MsG0780038631.01.T01:intron 35.0%
! ATCTTCATCGATTGACTCAT+GGG - Chr7:50180226-50180245 MsG0780038631.01.T01:intron 35.0%
! ATTTTTGCACAGGGAAACTT+GGG - Chr7:50179609-50179628 MsG0780038631.01.T01:intron 35.0%
! CTAATCAAAGTTGGTCTACA+AGG + Chr7:50176647-50176666 None:intergenic 35.0%
! CTTTGTGAGTTTTCCATTGA+AGG + Chr7:50178383-50178402 None:intergenic 35.0%
! CTTTTCTTGTGTTAACCCTT+CGG + Chr7:50179217-50179236 None:intergenic 35.0%
! GGAAAGAGGTGTATAAGATA+AGG - Chr7:50180121-50180140 MsG0780038631.01.T01:CDS 35.0%
! TATCTTCATCGATTGACTCA+TGG - Chr7:50180225-50180244 MsG0780038631.01.T01:intron 35.0%
! TCTCATTTTACACTCTTCTC+TGG - Chr7:50177768-50177787 MsG0780038631.01.T01:intron 35.0%
! TTACATGCTTTGTTGCAATC+TGG + Chr7:50179705-50179724 None:intergenic 35.0%
!! GAACAGTTGATGAATGAATG+GGG - Chr7:50179930-50179949 MsG0780038631.01.T01:intron 35.0%
!!! AAGCTTTTTGAGGTAAGAAC+TGG + Chr7:50176329-50176348 None:intergenic 35.0%
!!! TTTGCAAGCTTTTTTAGCAG+TGG + Chr7:50178657-50178676 None:intergenic 35.0%
!!! TTTTTGAGGTAAGAACTGGT+TGG + Chr7:50176325-50176344 None:intergenic 35.0%
AAGAGACTCTTGGGATTGTT+TGG + Chr7:50178077-50178096 None:intergenic 40.0%
AATAAATGCAGGGGACAAAG+TGG - Chr7:50177958-50177977 MsG0780038631.01.T01:intron 40.0%
AATTGCAGCCACGATATAAC+GGG - Chr7:50177457-50177476 MsG0780038631.01.T01:intron 40.0%
ACAAAAAAGGAGAGGGAAGA+GGG - Chr7:50178870-50178889 MsG0780038631.01.T01:intron 40.0%
ACTACAAACCCGTTATATCG+TGG + Chr7:50177468-50177487 None:intergenic 40.0%
ACTATCTCCTCTAGTAATCC+GGG + Chr7:50179176-50179195 None:intergenic 40.0%
AGGGGCCTACATAATTTAGT+GGG + Chr7:50177597-50177616 None:intergenic 40.0%
AGGGTGCAGATACAAATGAT+GGG + Chr7:50179387-50179406 None:intergenic 40.0%
ATATCCAATGGACATGGTGT+AGG + Chr7:50179876-50179895 None:intergenic 40.0%
CAAAGTGGATAGTGCTTTGA+AGG - Chr7:50177973-50177992 MsG0780038631.01.T01:intron 40.0%
CAATTGCAGCCACGATATAA+CGG - Chr7:50177456-50177475 MsG0780038631.01.T01:intron 40.0%
CACTATCTCCTCTAGTAATC+CGG + Chr7:50179177-50179196 None:intergenic 40.0%
GAAAACTCACAAAGACTGCA+CGG - Chr7:50178389-50178408 MsG0780038631.01.T01:intron 40.0%
GAAAGACACCTCTTACAAGT+CGG - Chr7:50179294-50179313 MsG0780038631.01.T01:intron 40.0%
GAAATGTGGGAAGATAGATG+AGG - Chr7:50178309-50178328 MsG0780038631.01.T01:intron 40.0%
GAACATGATGAATTGGATCG+TGG - Chr7:50180301-50180320 MsG0780038631.01.T01:five_prime_UTR 40.0%
GACCTTTAAATGGACCCATA+TGG + Chr7:50178845-50178864 None:intergenic 40.0%
GACTTGATATCATCTGAACC+TGG + Chr7:50179807-50179826 None:intergenic 40.0%
GATCCGACTAGATTTATGAG+GGG + Chr7:50177615-50177634 None:intergenic 40.0%
GCAATCTGGATCGATCATTT+GGG + Chr7:50179691-50179710 None:intergenic 40.0%
GGAAGTCTCTTTGATCTAAC+TGG + Chr7:50179957-50179976 None:intergenic 40.0%
GGATCCGACTAGATTTATGA+GGG + Chr7:50177616-50177635 None:intergenic 40.0%
GTCTAATTGCTTCATCACCA+CGG + Chr7:50178005-50178024 None:intergenic 40.0%
TACAAAAAAGGAGAGGGAAG+AGG - Chr7:50178869-50178888 MsG0780038631.01.T01:intron 40.0%
TCCACCTACAAAAAAGGAGA+GGG - Chr7:50178863-50178882 MsG0780038631.01.T01:intron 40.0%
TGCAATCTGGATCGATCATT+TGG + Chr7:50179692-50179711 None:intergenic 40.0%
TGGATCCGACTAGATTTATG+AGG + Chr7:50177617-50177636 None:intergenic 40.0%
TTGAAGACAAGGTTACGGTT+AGG + Chr7:50177701-50177720 None:intergenic 40.0%
! AGATAGTGCCCCTTTTCTTT+GGG - Chr7:50179189-50179208 MsG0780038631.01.T01:intron 40.0%
! CATTTTTGCACAGGGAAACT+TGG - Chr7:50179608-50179627 MsG0780038631.01.T01:intron 40.0%
! GTAGTTCGTCTTTTGCATGT+AGG + Chr7:50179640-50179659 None:intergenic 40.0%
!!! TAACTGCATTTTTTCCTGGG+AGG - Chr7:50177525-50177544 MsG0780038631.01.T01:intron 40.0%
!!! TCTTCCCTCTCCTTTTTTGT+AGG + Chr7:50178870-50178889 None:intergenic 40.0%
AAACGAAGAGATGGCTTCGA+TGG + Chr7:50178041-50178060 None:intergenic 45.0%
AGACCACATAAGACCGAAGA+CGG + Chr7:50176740-50176759 None:intergenic 45.0%
AGGCCCCTCATAAATCTAGT+CGG - Chr7:50177609-50177628 MsG0780038631.01.T01:intron 45.0%
CAGGGTGCAGATACAAATGA+TGG + Chr7:50179388-50179407 None:intergenic 45.0%
CCTTCGGTTCCCAAAGAAAA+GGG + Chr7:50179201-50179220 None:intergenic 45.0%
CTATCTCCTCTAGTAATCCG+GGG + Chr7:50179175-50179194 None:intergenic 45.0%
CTGAACGGGAGACAGTTTAT+TGG - Chr7:50179418-50179437 MsG0780038631.01.T01:intron 45.0%
CTTCGGTTCCCAAAGAAAAG+GGG + Chr7:50179200-50179219 None:intergenic 45.0%
GAGGGGCCTACATAATTTAG+TGG + Chr7:50177598-50177617 None:intergenic 45.0%
GCAAAAGACGAACTACGTGA+TGG - Chr7:50179644-50179663 MsG0780038631.01.T01:intron 45.0%
GTAGCTAGTAGAAAAGGACC+CGG - Chr7:50177907-50177926 MsG0780038631.01.T01:intron 45.0%
GTCCACCTACAAAAAAGGAG+AGG - Chr7:50178862-50178881 MsG0780038631.01.T01:intron 45.0%
TACCAAGGTGAAGCCTTCAA+TGG - Chr7:50178367-50178386 MsG0780038631.01.T01:intron 45.0%
TAGACAAGCACGGTATGAAG+AGG - Chr7:50179743-50179762 MsG0780038631.01.T01:intron 45.0%
TTCCATTGAAGGCTTCACCT+TGG + Chr7:50178372-50178391 None:intergenic 45.0%
! ATACCGTCTTCGGTCTTATG+TGG - Chr7:50176734-50176753 MsG0780038631.01.T01:CDS 45.0%
! CTTGGGATTGTTTGGAGCAA+AGG + Chr7:50178069-50178088 None:intergenic 45.0%
! GAGATAGTGCCCCTTTTCTT+TGG - Chr7:50179188-50179207 MsG0780038631.01.T01:intron 45.0%
!! CCTTTTCTTTGGGAACCGAA+GGG - Chr7:50179199-50179218 MsG0780038631.01.T01:intron 45.0%
!! GCATGTTTGGCTCTGACATA+AGG + Chr7:50176468-50176487 None:intergenic 45.0%
!! GGATAGTGCTTTGAAGGACA+TGG - Chr7:50177979-50177998 MsG0780038631.01.T01:intron 45.0%
!! TCACAAGACCGACTTGTAAG+AGG + Chr7:50179305-50179324 None:intergenic 45.0%
!!! TCCCTCTCCTTTTTTGTAGG+TGG + Chr7:50178867-50178886 None:intergenic 45.0%
!! ATATTATATTGATATTATTA+GGG + Chr7:50177880-50177899 None:intergenic 5.0%
!! TAAAAAAAAAAAAAAAAATC+TGG + Chr7:50177366-50177385 None:intergenic 5.0%
AAGGCCTCGAAACGAAGAGA+TGG + Chr7:50178050-50178069 None:intergenic 50.0%
ACAAAGACTGCACGGTCTCA+TGG - Chr7:50178397-50178416 MsG0780038631.01.T01:intron 50.0%
CCCTTCGGTTCCCAAAGAAA+AGG + Chr7:50179202-50179221 None:intergenic 50.0%
GAAGCCATCTCTTCGTTTCG+AGG - Chr7:50178043-50178062 MsG0780038631.01.T01:intron 50.0%
GATGGCTTCGATGGCTTCTT+CGG + Chr7:50178032-50178051 None:intergenic 50.0%
GCTACCTACACCATGTCCAT+TGG - Chr7:50179869-50179888 MsG0780038631.01.T01:intron 50.0%
TGTCAGAGCCAAACATGCTC+AGG - Chr7:50176470-50176489 MsG0780038631.01.T01:three_prime_UTR 50.0%
! GTGTTGTTATCACTCCTCCC+AGG + Chr7:50177542-50177561 None:intergenic 50.0%
!! CCCTTTTCTTTGGGAACCGA+AGG - Chr7:50179198-50179217 MsG0780038631.01.T01:intron 50.0%
CCGTTCAGCACTACTGGACA+GGG + Chr7:50179406-50179425 None:intergenic 55.0%
CTAGTAATCCGGGGTTCGAC+CGG + Chr7:50179166-50179185 None:intergenic 55.0%
GGCTTTCCGATACACTGCCT+CGG + Chr7:50179670-50179689 None:intergenic 55.0%
GTCGAACCCCGGATTACTAG+AGG - Chr7:50179166-50179185 MsG0780038631.01.T01:intron 55.0%
TAGTAATCCGGGGTTCGACC+GGG + Chr7:50179165-50179184 None:intergenic 55.0%
TGATGGCCGAGGCAGTGTAT+CGG - Chr7:50179661-50179680 MsG0780038631.01.T01:intron 55.0%
TGCACAGGGAAACTTGGGCT+GGG - Chr7:50179614-50179633 MsG0780038631.01.T01:intron 55.0%
TGTCTCCCGTTCAGCACTAC+TGG + Chr7:50179412-50179431 None:intergenic 55.0%
TTGCACAGGGAAACTTGGGC+TGG - Chr7:50179613-50179632 MsG0780038631.01.T01:intron 55.0%
! CCCTGTCCAGTAGTGCTGAA+CGG - Chr7:50179403-50179422 MsG0780038631.01.T01:intron 55.0%
! CCTGTCCAGTAGTGCTGAAC+GGG - Chr7:50179404-50179423 MsG0780038631.01.T01:intron 55.0%
!! TGCTTTGAAGGACATGGCCG+TGG - Chr7:50177985-50178004 MsG0780038631.01.T01:intron 55.0%
CCCGTTCAGCACTACTGGAC+AGG + Chr7:50179407-50179426 None:intergenic 60.0%
GACGAACTACGTGATGGCCG+AGG - Chr7:50179650-50179669 MsG0780038631.01.T01:intron 60.0%
CTCATCTCCCGGTCGAACCC+CGG - Chr7:50179155-50179174 MsG0780038631.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 50176267 50180322 50176267 ID=MsG0780038631.01;Name=MsG0780038631.01
Chr7 mRNA 50176267 50180322 50176267 ID=MsG0780038631.01.T01;Parent=MsG0780038631.01;Name=MsG0780038631.01.T01;_AED=0.36;_eAED=0.36;_QI=93|1|1|1|0.75|0.6|5|261|300
Chr7 exon 50176267 50176353 50176267 ID=MsG0780038631.01.T01:exon:6850;Parent=MsG0780038631.01.T01
Chr7 exon 50176393 50176968 50176393 ID=MsG0780038631.01.T01:exon:6849;Parent=MsG0780038631.01.T01
Chr7 five_prime_UTR 50180230 50180322 50180230 ID=MsG0780038631.01.T01:five_prime_utr;Parent=MsG0780038631.01.T01
Chr7 CDS 50180098 50180229 50180098 ID=MsG0780038631.01.T01:cds;Parent=MsG0780038631.01.T01
Chr7 CDS 50178466 50178678 50178466 ID=MsG0780038631.01.T01:cds;Parent=MsG0780038631.01.T01
Chr7 CDS 50178124 50178279 50178124 ID=MsG0780038631.01.T01:cds;Parent=MsG0780038631.01.T01
Chr7 CDS 50176567 50176968 50176567 ID=MsG0780038631.01.T01:cds;Parent=MsG0780038631.01.T01
Chr7 three_prime_UTR 50176393 50176566 50176393 ID=MsG0780038631.01.T01:three_prime_utr;Parent=MsG0780038631.01.T01
Chr7 three_prime_UTR 50176267 50176353 50176267 ID=MsG0780038631.01.T01:three_prime_utr;Parent=MsG0780038631.01.T01
Chr7 mRNA 50176292 50180322 50176292 ID=MsG0780038631.01.T02;Parent=MsG0780038631.01;Name=MsG0780038631.01.T02;_AED=0.35;_eAED=0.35;_QI=93|1|1|1|1|1|4|275|300
Chr7 exon 50176292 50176968 50176292 ID=MsG0780038631.01.T02:exon:6851;Parent=MsG0780038631.01.T02
Chr7 five_prime_UTR 50180230 50180322 50180230 ID=MsG0780038631.01.T02:five_prime_utr;Parent=MsG0780038631.01.T02
Chr7 CDS 50180098 50180229 50180098 ID=MsG0780038631.01.T02:cds;Parent=MsG0780038631.01.T02
Chr7 CDS 50178466 50178678 50178466 ID=MsG0780038631.01.T02:cds;Parent=MsG0780038631.01.T02
Chr7 CDS 50178124 50178279 50178124 ID=MsG0780038631.01.T02:cds;Parent=MsG0780038631.01.T02
Chr7 CDS 50176567 50176968 50176567 ID=MsG0780038631.01.T02:cds;Parent=MsG0780038631.01.T02
Chr7 three_prime_UTR 50176292 50176566 50176292 ID=MsG0780038631.01.T02:three_prime_utr;Parent=MsG0780038631.01.T02
Gene Sequence

>MsG0780038631.01.T01

ATGGAAGAAGAAAGAGGTAGTTACAAGAACAAGAGTTTGTTGTTATCAAAAGGGAAAAAGGAAGACATTTATCATGTACTTTACAAGGTTCCTTATGGTGATAGTCCTTATGTCAGAGCCAAACATGCTCAGCTAGTAGAAAAGGACCCGGAAGCTGCAATTGTATTATTTTGGAAAGCAATAAATGCAGGGGACAAAGTGGATAGTGCTTTGAAGGACATGGCCGTGGTGATGAAGCAATTAGACAGATCCGAAGAAGCCATCGAAGCCATCTCTTCGTTTCGAGGCCTTTGCTCCAAACAATCCCAAGAGTCTCTTGATAATGTACTAATTGATCTTTACAAGAAATGTGGGAAGATAGATGAGGAAATTGATTTGTTGAAGCAAAAGCTGAAATTGATCTACCAAGGTGAAGCCTTCAATGGAAAACTCACAAAGACTGCACGGTCTCATGGCAAGAAGTTTCAAGTTTCTATTAAACAAGAAACTTCAAGATTACTGGGAAACTTGGGCTGGGCCTACATGCAAAAGACGAACTACGTGATGGCCGAGGCAGTGTATCGGAAAGCCCAAATGATCGATCCAGATTGCAACAAAGCATGTAATTTAGGTCTATGTCTCATTAGACAAGCACGGTATGAAGAGGCACAGTTGATAATTGATGATATATTAAAAGGAGAACTTCCAGGTTCAGATGATATCAAGTCAAAGAAAAGGGCTCAAGATCTCTTAGAAGAGTTGAGATCATTGCTACCTACACCATGTCCATTGGATATTTTGGTTATGGATGATGAGTTCATCAAAGGGATAGAACAGTTGATGAATGAATGGGGTCCAGTTAGATCAAAGAGACTTCCAATATTTGAAGAGATTTCTTCTTGTAGAGATCAACTAGCTTGTTAA

>MsG0780038631.01.T02

ATGGAAGAAGAAAGAGGTAGTTACAAGAACAAGAGTTTGTTGTTATCAAAAGGGAAAAAGGAAGACATTTATCATGTACTTTACAAGGTTCCTTATGGTGATAGTCCTTATGTCAGAGCCAAACATGCTCAGCTAGTAGAAAAGGACCCGGAAGCTGCAATTGTATTATTTTGGAAAGCAATAAATGCAGGGGACAAAGTGGATAGTGCTTTGAAGGACATGGCCGTGGTGATGAAGCAATTAGACAGATCCGAAGAAGCCATCGAAGCCATCTCTTCGTTTCGAGGCCTTTGCTCCAAACAATCCCAAGAGTCTCTTGATAATGTACTAATTGATCTTTACAAGAAATGTGGGAAGATAGATGAGGAAATTGATTTGTTGAAGCAAAAGCTGAAATTGATCTACCAAGGTGAAGCCTTCAATGGAAAACTCACAAAGACTGCACGGTCTCATGGCAAGAAGTTTCAAGTTTCTATTAAACAAGAAACTTCAAGATTACTGGGAAACTTGGGCTGGGCCTACATGCAAAAGACGAACTACGTGATGGCCGAGGCAGTGTATCGGAAAGCCCAAATGATCGATCCAGATTGCAACAAAGCATGTAATTTAGGTCTATGTCTCATTAGACAAGCACGGTATGAAGAGGCACAGTTGATAATTGATGATATATTAAAAGGAGAACTTCCAGGTTCAGATGATATCAAGTCAAAGAAAAGGGCTCAAGATCTCTTAGAAGAGTTGAGATCATTGCTACCTACACCATGTCCATTGGATATTTTGGTTATGGATGATGAGTTCATCAAAGGGATAGAACAGTTGATGAATGAATGGGGTCCAGTTAGATCAAAGAGACTTCCAATATTTGAAGAGATTTCTTCTTGTAGAGATCAACTAGCTTGTTAA
Protein sequence

>MsG0780038631.01.T01

MEEERGSYKNKSLLLSKGKKEDIYHVLYKVPYGDSPYVRAKHAQLVEKDPEAAIVLFWKAINAGDKVDSALKDMAVVMKQLDRSEEAIEAISSFRGLCSKQSQESLDNVLIDLYKKCGKIDEEIDLLKQKLKLIYQGEAFNGKLTKTARSHGKKFQVSIKQETSRLLGNLGWAYMQKTNYVMAEAVYRKAQMIDPDCNKACNLGLCLIRQARYEEAQLIIDDILKGELPGSDDIKSKKRAQDLLEELRSLLPTPCPLDILVMDDEFIKGIEQLMNEWGPVRSKRLPIFEEISSCRDQLAC*

>MsG0780038631.01.T02

MEEERGSYKNKSLLLSKGKKEDIYHVLYKVPYGDSPYVRAKHAQLVEKDPEAAIVLFWKAINAGDKVDSALKDMAVVMKQLDRSEEAIEAISSFRGLCSKQSQESLDNVLIDLYKKCGKIDEEIDLLKQKLKLIYQGEAFNGKLTKTARSHGKKFQVSIKQETSRLLGNLGWAYMQKTNYVMAEAVYRKAQMIDPDCNKACNLGLCLIRQARYEEAQLIIDDILKGELPGSDDIKSKKRAQDLLEELRSLLPTPCPLDILVMDDEFIKGIEQLMNEWGPVRSKRLPIFEEISSCRDQLAC*