AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039099.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039099.01.T01 MTR_0474s0020 50.730 274 84 11 21 286 1 231 6.13e-50 168
MsG0780039099.01.T01 MTR_0474s0020 41.689 379 102 13 21 392 1 267 7.84e-45 157
MsG0780039099.01.T01 MTR_7g066640 49.533 214 66 6 44 257 16 187 3.82e-42 147
MsG0780039099.01.T01 MTR_7g066600 49.261 203 64 6 29 219 8 183 2.28e-38 137
MsG0780039099.01.T01 MTR_4g015930 31.217 378 199 17 30 388 9 344 8.85e-24 104
MsG0780039099.01.T01 MTR_4g015930 31.217 378 199 17 30 388 9 344 9.97e-24 103
MsG0780039099.01.T01 MTR_4g015930 31.217 378 199 17 30 388 9 344 1.22e-23 103
MsG0780039099.01.T01 MTR_4g016810 29.396 381 216 16 26 391 3 345 5.53e-18 86.3
MsG0780039099.01.T01 MTR_2g016200 27.151 372 222 13 44 388 28 377 9.56e-17 82.8
MsG0780039099.01.T01 MTR_7g014430 29.787 329 184 11 84 388 60 365 2.70e-16 81.3
MsG0780039099.01.T01 MTR_4g016870 30.932 236 131 10 26 257 7 214 2.43e-15 75.9
MsG0780039099.01.T01 MTR_2g017420 29.563 389 223 16 29 392 13 375 6.15e-15 77.4
MsG0780039099.01.T01 MTR_3g093930 34.831 267 139 13 137 394 328 568 1.16e-14 76.3
MsG0780039099.01.T01 MTR_8g089000 32.919 322 177 14 80 391 62 354 1.29e-14 76.3
MsG0780039099.01.T01 MTR_4g040330 29.494 356 201 17 46 386 29 349 6.33e-14 73.9
MsG0780039099.01.T01 MTR_5g069580 28.382 377 201 14 19 388 3 317 8.45e-14 73.6
MsG0780039099.01.T01 MTR_2g450870 29.949 394 188 21 45 388 31 386 1.67e-13 72.8
MsG0780039099.01.T01 MTR_2g017480 27.907 387 185 14 46 393 34 365 6.40e-13 70.9
MsG0780039099.01.T01 MTR_4g016850 28.435 313 186 12 30 335 9 290 6.55e-13 70.9
MsG0780039099.01.T01 MTR_7g073290 32.090 268 150 10 134 394 296 538 7.19e-13 70.9
MsG0780039099.01.T01 MTR_8g036920 27.540 374 194 13 46 394 22 343 8.60e-13 69.3
MsG0780039099.01.T01 MTR_6g038670 26.872 454 196 19 21 390 4 405 8.94e-13 70.5
MsG0780039099.01.T01 MTR_1g101250 25.558 403 220 14 29 388 8 373 1.29e-12 70.1
MsG0780039099.01.T01 MTR_2g017470 27.989 368 206 14 46 392 34 363 1.35e-12 70.1
MsG0780039099.01.T01 MTR_6g016130 28.686 373 195 17 38 390 23 344 1.47e-12 69.7
MsG0780039099.01.T01 MTR_3g048910 32.095 377 195 22 29 384 5 341 1.53e-12 69.7
MsG0780039099.01.T01 MTR_6g016060 28.418 373 202 16 35 390 20 344 1.72e-12 68.9
MsG0780039099.01.T01 MTR_6g016090 28.418 373 202 16 35 390 20 344 1.72e-12 68.9
MsG0780039099.01.T01 MTR_6g016120 28.418 373 202 16 35 390 20 344 1.72e-12 68.9
MsG0780039099.01.T01 MTR_6g016085 28.418 373 202 16 35 390 20 344 1.72e-12 68.9
MsG0780039099.01.T01 MTR_6g016100 28.418 373 202 16 35 390 20 344 1.72e-12 68.9
MsG0780039099.01.T01 MTR_6g016055 28.418 373 202 16 35 390 20 344 1.72e-12 68.9
MsG0780039099.01.T01 MTR_6g016115 28.418 373 202 16 35 390 20 344 1.72e-12 68.9
MsG0780039099.01.T01 MTR_6g016075 28.418 373 202 16 35 390 20 344 1.72e-12 68.9
MsG0780039099.01.T01 MTR_6g016070 28.418 373 202 16 35 390 20 344 1.72e-12 68.9
MsG0780039099.01.T01 MTR_6g016065 28.418 373 202 16 35 390 20 344 1.72e-12 68.9
MsG0780039099.01.T01 MTR_6g016105 28.418 373 202 16 35 390 20 344 1.72e-12 68.9
MsG0780039099.01.T01 MTR_6g016110 28.418 373 202 16 35 390 20 344 1.72e-12 68.9
MsG0780039099.01.T01 MTR_6g016095 28.418 373 202 16 35 390 20 344 1.72e-12 68.9
MsG0780039099.01.T01 MTR_6g016125 28.418 373 202 16 35 390 20 344 1.72e-12 68.9
MsG0780039099.01.T01 MTR_6g016080 28.418 373 202 16 35 390 20 344 1.72e-12 68.9
MsG0780039099.01.T01 MTR_3g449240 31.546 317 174 15 82 381 60 350 2.49e-12 68.9
MsG0780039099.01.T01 MTR_2g017785 28.718 390 222 15 22 386 5 363 2.69e-12 68.6
MsG0780039099.01.T01 MTR_8g088970 32.278 316 178 11 84 391 62 349 2.86e-12 68.9
MsG0780039099.01.T01 MTR_7g066620 56.098 82 7 2 340 392 10 91 3.17e-12 68.9
MsG0780039099.01.T01 MTR_0087s0050 28.691 359 181 13 39 385 24 319 3.24e-12 68.6
MsG0780039099.01.T01 MTR_4g028090 30.655 336 173 13 79 388 52 353 3.89e-12 68.6
MsG0780039099.01.T01 MTR_4g028090 32.864 213 121 5 183 394 264 455 9.34e-11 64.3
MsG0780039099.01.T01 MTR_6g038940 27.034 381 198 14 15 379 1 317 3.97e-12 68.6
MsG0780039099.01.T01 MTR_5g085970 27.828 442 213 19 26 390 14 426 6.40e-12 67.8
MsG0780039099.01.T01 MTR_3g452850 28.205 351 189 13 46 391 10 302 7.93e-12 67.4
MsG0780039099.01.T01 MTR_6g471240 27.545 334 205 9 80 392 61 378 1.00e-11 67.4
MsG0780039099.01.T01 MTR_3g026990 28.250 400 204 18 46 391 33 403 1.14e-11 67.0
MsG0780039099.01.T01 MTR_2g055690 26.972 393 195 16 45 386 31 382 1.33e-11 67.0
MsG0780039099.01.T01 MTR_5g063760 28.198 383 219 15 31 388 3 354 1.44e-11 66.6
MsG0780039099.01.T01 MTR_4g417270 27.103 428 220 17 46 394 30 444 1.87e-11 66.6
MsG0780039099.01.T01 MTR_3g009400 33.333 264 149 10 130 388 272 513 1.99e-11 66.2
MsG0780039099.01.T01 MTR_6g038820 25.566 442 229 17 29 389 15 437 2.05e-11 65.9
MsG0780039099.01.T01 MTR_1g069470 29.042 334 171 11 70 388 42 324 2.22e-11 66.2
MsG0780039099.01.T01 MTR_4g017260 28.271 428 215 19 46 394 19 433 2.60e-11 65.9
MsG0780039099.01.T01 MTR_6g016050 28.649 370 193 17 41 390 1122 1440 3.19e-11 65.9
MsG0780039099.01.T01 MTR_2g032560 29.358 327 190 12 83 388 50 356 3.83e-11 65.5
MsG0780039099.01.T01 MTR_6g039110 27.157 394 216 14 26 384 9 366 4.00e-11 65.5
MsG0780039099.01.T01 MTR_4g018970 32.198 323 178 12 80 391 62 354 4.07e-11 65.5
MsG0780039099.01.T01 MTR_4g017600 25.316 395 242 12 21 388 1 369 4.39e-11 65.5
MsG0780039099.01.T01 MTR_5g021670 30.797 276 148 11 136 388 456 711 7.10e-11 64.7
MsG0780039099.01.T01 MTR_5g096340 29.393 313 169 10 80 388 59 323 9.15e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039099.01.T01 AT1G58190 29.581 382 211 15 21 388 1 338 1.20e-22 100
MsG0780039099.01.T01 AT1G58190 29.129 333 187 10 21 331 1 306 1.58e-21 97.4
MsG0780039099.01.T01 AT1G74170 27.390 387 214 14 44 386 25 388 3.28e-18 87.4
MsG0780039099.01.T01 AT1G58190 29.508 305 170 13 46 331 37 315 1.43e-17 85.5
MsG0780039099.01.T01 AT1G74180 26.027 365 221 14 29 381 12 339 2.36e-16 81.6
MsG0780039099.01.T01 AT1G74180 26.724 348 208 13 46 381 13 325 8.91e-16 79.7
MsG0780039099.01.T01 AT1G54470 26.471 340 177 13 10 335 88 368 1.98e-15 78.2
MsG0780039099.01.T01 AT2G25470 27.095 358 168 12 43 388 10 286 3.30e-15 78.2
MsG0780039099.01.T01 AT2G25470 27.095 358 168 12 43 388 28 304 3.53e-15 77.8
MsG0780039099.01.T01 AT1G07390 26.340 429 202 19 35 388 27 416 4.15e-15 77.8
MsG0780039099.01.T01 AT2G25470 27.095 358 168 12 43 388 28 304 4.24e-15 77.8
MsG0780039099.01.T01 AT1G74190 28.155 309 171 10 44 332 25 302 4.33e-15 77.8
MsG0780039099.01.T01 AT3G53240 26.948 308 183 10 41 337 1 277 5.58e-15 77.4
MsG0780039099.01.T01 AT1G07390 28.261 368 175 17 82 388 34 373 1.03e-13 73.6
MsG0780039099.01.T01 AT3G11080 28.451 355 207 15 46 388 38 357 1.58e-13 72.8
MsG0780039099.01.T01 AT3G11080 28.451 355 207 15 46 388 38 357 1.58e-13 72.8
MsG0780039099.01.T01 AT5G49290 26.271 354 189 12 46 386 13 307 5.19e-13 71.2
MsG0780039099.01.T01 AT5G49290 26.271 354 189 12 46 386 13 307 5.19e-13 71.2
MsG0780039099.01.T01 AT5G49290 26.271 354 189 12 46 386 13 307 5.19e-13 71.2
MsG0780039099.01.T01 AT5G49290 26.271 354 189 12 46 386 27 321 5.35e-13 71.2
MsG0780039099.01.T01 AT5G49290 26.271 354 189 12 46 386 27 321 5.59e-13 71.2
MsG0780039099.01.T01 AT3G05660 29.450 309 188 9 83 390 67 346 1.71e-12 69.7
MsG0780039099.01.T01 AT5G01890 26.888 331 191 13 79 388 49 349 2.26e-12 69.3
MsG0780039099.01.T01 AT3G53240 28.137 263 157 8 82 337 4 241 2.79e-12 68.9
MsG0780039099.01.T01 AT3G53240 28.137 263 157 8 82 337 4 241 2.79e-12 68.9
MsG0780039099.01.T01 AT4G13920 28.158 380 204 11 37 390 17 353 7.66e-12 67.8
MsG0780039099.01.T01 AT5G49290 26.899 316 169 10 79 386 18 279 1.04e-11 67.4
MsG0780039099.01.T01 AT2G34930 29.156 391 202 14 51 388 45 413 2.98e-11 65.9
MsG0780039099.01.T01 AT5G49290 26.214 309 171 11 46 322 13 296 3.04e-11 65.9
MsG0780039099.01.T01 AT1G07390 25.132 378 173 17 35 338 27 368 7.42e-11 64.7

Find 78 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGATTTGGAAGACCATTT+AGG 0.217524 7:+57921580 None:intergenic
TGACTTGTCTTCAAACTATA+TGG 0.263069 7:-57921798 MsG0780039099.01.T01:CDS
TTGAAGACTCTTGACCTATC+AGG 0.269721 7:-57923073 MsG0780039099.01.T01:CDS
ATTGACCCAATCCCTCAAAT+TGG 0.281043 7:-57923139 MsG0780039099.01.T01:CDS
AACATTATTTCATCCCTAAA+TGG 0.282995 7:-57921594 MsG0780039099.01.T01:CDS
TTACGCAGGGTTGAACAATT+TGG 0.313106 7:-57922942 MsG0780039099.01.T01:intron
GAGATTTGGAAGACCATTTA+GGG 0.316440 7:+57921581 None:intergenic
CTTGAGTTTGGTGACTCTTC+CGG 0.329135 7:+57923192 None:intergenic
TATATCAAAACTGAGGTCTT+TGG 0.336096 7:-57922072 MsG0780039099.01.T01:CDS
TATTGATATGAGTTTCCGTT+TGG 0.370709 7:-57923320 MsG0780039099.01.T01:CDS
CTCAAGAGTTTAAATTTAGC+AGG 0.383866 7:-57922228 MsG0780039099.01.T01:CDS
TCTCGGCATTCTGTCTTGTT+TGG 0.385256 7:-57922882 MsG0780039099.01.T01:CDS
GTCTCTATCGTTAGCTGGAT+CGG 0.386662 7:-57922840 MsG0780039099.01.T01:CDS
CAAGGTCCAATTTGAGGGAT+TGG 0.391523 7:+57923133 None:intergenic
TTTCCGTTTGGGAAACTCTC+TGG 0.396191 7:-57923308 MsG0780039099.01.T01:CDS
GGCATTCTGTCTTGTTTGGA+TGG 0.402921 7:-57922878 MsG0780039099.01.T01:CDS
AAGTCAAGAGATCTGAGATT+TGG 0.406414 7:+57921567 None:intergenic
TATATCAAAACTGAAGAGAT+TGG 0.407531 7:-57921828 MsG0780039099.01.T01:CDS
ACTGGGCATAAGCTTGAGTT+TGG 0.424464 7:+57923180 None:intergenic
TGCTAAATTTAAACTCTTGA+GGG 0.427106 7:+57922230 None:intergenic
TATGCCCAGTCCCGAGGATC+AGG 0.427527 7:-57923167 MsG0780039099.01.T01:CDS
AAAATCCTGATCCTCGGGAC+TGG 0.430171 7:+57923162 None:intergenic
CGGATATTCCAGACCCTGAT+AGG 0.432667 7:+57923059 None:intergenic
AAGGTCCAATTTGAGGGATT+GGG 0.434139 7:+57923134 None:intergenic
ATTACAAAATCCGAGTAGTT+AGG 0.436385 7:+57923106 None:intergenic
GTTTGGGAAACTCTCTGGCT+TGG 0.441446 7:-57923303 MsG0780039099.01.T01:CDS
GATATTGCATCAGCTCTTAG+TGG 0.442598 7:-57922011 MsG0780039099.01.T01:CDS
GATATTGCATCAGCTCTTAG+TGG 0.442598 7:-57922261 MsG0780039099.01.T01:CDS
ATTGATATGAGTTTCCGTTT+GGG 0.442878 7:-57923319 MsG0780039099.01.T01:CDS
ACAAGAGAGTAAAATTACTC+TGG 0.444732 7:-57921961 MsG0780039099.01.T01:CDS
TTAAACTCTTGAGGGAAGAA+AGG 0.445109 7:+57922238 None:intergenic
AATAATTTCAAGAATGCTCT+CGG 0.458403 7:-57922899 MsG0780039099.01.T01:CDS
AAATAATGTTGTTACTCAAA+CGG 0.459868 7:+57921607 None:intergenic
AATGGATCACTTGATATTAG+TGG 0.460406 7:-57921528 MsG0780039099.01.T01:CDS
GGCTGCCAAGGTCCAATTTG+AGG 0.462869 7:+57923127 None:intergenic
TTAAGTCGCAACAACTTGAA+TGG 0.464651 7:-57921546 MsG0780039099.01.T01:CDS
CTGCTAAATTTAAACTCTTG+AGG 0.467751 7:+57922229 None:intergenic
CTCAAGTCTCTATCGTTAGC+TGG 0.471436 7:-57922845 MsG0780039099.01.T01:CDS
GCTGCCAAGGTCCAATTTGA+GGG 0.477607 7:+57923128 None:intergenic
TTAAACTCTTGAGAGAAGAA+AGG 0.487200 7:+57921988 None:intergenic
ACTCTTGACCTATCAGGGTC+TGG 0.493498 7:-57923067 MsG0780039099.01.T01:CDS
TTGACGCAGATTGTTGTGAA+TGG 0.494213 7:-57923240 MsG0780039099.01.T01:CDS
AAATCCTGATCCTCGGGACT+GGG 0.494952 7:+57923163 None:intergenic
GTGTCACTGAAGTTGTTCTT+CGG 0.497301 7:+57922285 None:intergenic
TCAATAAAATCCTGATCCTC+GGG 0.498652 7:+57923157 None:intergenic
GTCAATAAAATCCTGATCCT+CGG 0.498981 7:+57923156 None:intergenic
CGTCGCTGTTTGAAAGGTGC+AGG 0.504009 7:+57922325 None:intergenic
TTGATTAGTAGTGGTGCAAT+CGG 0.506287 7:+57923039 None:intergenic
TTTGGTGACTCTTCCGGTGG+TGG 0.518965 7:+57923198 None:intergenic
TGTTCTTCGGAATATTGTAA+AGG 0.519792 7:+57922298 None:intergenic
CAAGAGAGTAAAATTACTCT+GGG 0.526243 7:-57921960 MsG0780039099.01.T01:CDS
TGAAGACTCTTGACCTATCA+GGG 0.534057 7:-57923072 MsG0780039099.01.T01:CDS
GATTGCACCACTACTAATCA+AGG 0.538111 7:-57923037 MsG0780039099.01.T01:intron
ACTTGACTTGGCAGTCAACT+CGG 0.543522 7:+57923536 None:intergenic
ACCTTGGCAGCCTAACTACT+CGG 0.558697 7:-57923116 MsG0780039099.01.T01:CDS
GGTACTCGTCGCTGTTTGAA+AGG 0.559407 7:+57922319 None:intergenic
TCAAGAGTTTAAATTTAGCA+GGG 0.562867 7:-57922227 MsG0780039099.01.T01:CDS
TCCGAGTAGTTAGGCTGCCA+AGG 0.571704 7:+57923115 None:intergenic
TATATGGACTCATTGCCCCT+AGG 0.583395 7:-57921782 MsG0780039099.01.T01:intron
CAATCCCTCAAATTGGACCT+TGG 0.584297 7:-57923132 MsG0780039099.01.T01:CDS
CAGAGAATCATGGATTTGCA+TGG 0.590415 7:-57921665 MsG0780039099.01.T01:CDS
AAGCCAGAGAGTTTCCCAAA+CGG 0.591108 7:+57923305 None:intergenic
GAAGTAACCTTGATTAGTAG+TGG 0.592996 7:+57923030 None:intergenic
GTTGAATGCAACACCACCAC+CGG 0.595679 7:-57923211 MsG0780039099.01.T01:CDS
TATAGTTTGAAGACAAGTCA+AGG 0.595705 7:+57921801 None:intergenic
AGTTGTTGTGACTCAAGTCA+AGG 0.600534 7:+57922045 None:intergenic
CAAGCTTATGCCCAGTCCCG+AGG 0.608788 7:-57923173 MsG0780039099.01.T01:CDS
ATTGAAGTGATGTATTGTGA+AGG 0.623055 7:-57923370 MsG0780039099.01.T01:CDS
ATGAAGAGCTTCTCAGTAGG+TGG 0.624912 7:-57923421 MsG0780039099.01.T01:CDS
GAGTTTGGTGACTCTTCCGG+TGG 0.631932 7:+57923195 None:intergenic
AATATGAAGAGCTTCTCAGT+AGG 0.645602 7:-57923424 MsG0780039099.01.T01:CDS
GTGTAAATATGAAGTGTCGT+CGG 0.659650 7:+57922817 None:intergenic
TTGAAGTGATGTATTGTGAA+GGG 0.663525 7:-57923369 MsG0780039099.01.T01:CDS
CACTTCATATTTACACAGTG+AGG 0.667272 7:-57922810 MsG0780039099.01.T01:CDS
TGCTAGATATATCAAAACTG+AGG 0.686622 7:-57922079 MsG0780039099.01.T01:intron
GATCTCAAGATTCTTCAATG+AGG 0.693046 7:+57922347 None:intergenic
GCAGATTGTTGTGAATGGAG+CGG 0.748435 7:-57923235 MsG0780039099.01.T01:CDS
ATGGATGGAAGTCTTCAACA+CGG 0.758212 7:-57923577 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAACCAAATAATAA+AGG - Chr7:57922326-57922345 MsG0780039099.01.T01:CDS 10.0%
!! TTTATTATTCAAAATATATG+AGG + Chr7:57922640-57922659 None:intergenic 10.0%
!! AAATACAATTATTGTATACA+AGG - Chr7:57922667-57922686 MsG0780039099.01.T01:intron 15.0%
!! ATAATATGGAAATGAAAATT+TGG + Chr7:57922127-57922146 None:intergenic 15.0%
!! TATTTATAGCCTTTATTATT+TGG + Chr7:57922338-57922357 None:intergenic 15.0%
!!! GTTTTTGTTTTAAAAACATA+TGG - Chr7:57922963-57922982 MsG0780039099.01.T01:intron 15.0%
!! AAATAATGTTGTTACTCAAA+CGG + Chr7:57923487-57923506 None:intergenic 20.0%
!!! TTTTATTTATCAGAGAATCA+TGG - Chr7:57923416-57923435 MsG0780039099.01.T01:CDS 20.0%
! AACATTATTTCATCCCTAAA+TGG - Chr7:57923497-57923516 MsG0780039099.01.T01:intron 25.0%
! AATAATTTCAAGAATGCTCT+CGG - Chr7:57922192-57922211 MsG0780039099.01.T01:intron 25.0%
! ACAATTATTGTATACAAGGA+AGG - Chr7:57922671-57922690 MsG0780039099.01.T01:intron 25.0%
! GAATTGTATTTGTCTAACAT+TGG - Chr7:57922541-57922560 MsG0780039099.01.T01:intron 25.0%
! GCTTTACTAATTTAATGTGT+AGG - Chr7:57922713-57922732 MsG0780039099.01.T01:intron 25.0%
! TAATGAAATTGTCTCCAAAA+CGG + Chr7:57922431-57922450 None:intergenic 25.0%
! TATATCAAAACTGAAGAGAT+TGG - Chr7:57923263-57923282 MsG0780039099.01.T01:CDS 25.0%
! TATATGTATATGTATTCGCT+AGG + Chr7:57923381-57923400 None:intergenic 25.0%
! TCAAGAGTTTAAATTTAGCA+GGG - Chr7:57922864-57922883 MsG0780039099.01.T01:CDS 25.0%
! TGCTAAATTTAAACTCTTGA+GGG + Chr7:57922864-57922883 None:intergenic 25.0%
! TTCCATATTATTATTACGCA+GGG - Chr7:57922136-57922155 MsG0780039099.01.T01:intron 25.0%
! TTTCCATATTATTATTACGC+AGG - Chr7:57922135-57922154 MsG0780039099.01.T01:intron 25.0%
!! TCATCTCATTTGATAATTTC+TGG - Chr7:57923339-57923358 MsG0780039099.01.T01:CDS 25.0%
!!! GTTTTTGTTGTAAGACAATA+GGG + Chr7:57921637-57921656 None:intergenic 25.0%
AACCCTGCGTAATAATAATA+TGG + Chr7:57922141-57922160 None:intergenic 30.0%
AATGGATCACTTGATATTAG+TGG - Chr7:57923563-57923582 MsG0780039099.01.T01:CDS 30.0%
ACAAGAGAGTAAAATTACTC+TGG - Chr7:57923130-57923149 MsG0780039099.01.T01:CDS 30.0%
ACATAACCATACATGATTAG+AGG + Chr7:57922990-57923009 None:intergenic 30.0%
ATTACAAAATCCGAGTAGTT+AGG + Chr7:57921988-57922007 None:intergenic 30.0%
ATTCTATCCTTACTGATCTA+AGG - Chr7:57921579-57921598 MsG0780039099.01.T01:CDS 30.0%
ATTGAAGTGATGTATTGTGA+AGG - Chr7:57921721-57921740 MsG0780039099.01.T01:intron 30.0%
ATTGATATGAGTTTCCGTTT+GGG - Chr7:57921772-57921791 MsG0780039099.01.T01:intron 30.0%
CAAGAGAGTAAAATTACTCT+GGG - Chr7:57923131-57923150 MsG0780039099.01.T01:CDS 30.0%
CTCAAGAGTTTAAATTTAGC+AGG - Chr7:57922863-57922882 MsG0780039099.01.T01:CDS 30.0%
CTGCTAAATTTAAACTCTTG+AGG + Chr7:57922865-57922884 None:intergenic 30.0%
GTACAAATATGTACTAGTGT+TGG + Chr7:57922390-57922409 None:intergenic 30.0%
GTATTTGTCTAACATTGGAT+TGG - Chr7:57922546-57922565 MsG0780039099.01.T01:intron 30.0%
TATAGTTTGAAGACAAGTCA+AGG + Chr7:57923293-57923312 None:intergenic 30.0%
TATATCAAAACTGAGGTCTT+TGG - Chr7:57923019-57923038 MsG0780039099.01.T01:intron 30.0%
TATTGATATGAGTTTCCGTT+TGG - Chr7:57921771-57921790 MsG0780039099.01.T01:intron 30.0%
TGCTAGATATATCAAAACTG+AGG - Chr7:57923012-57923031 MsG0780039099.01.T01:intron 30.0%
TGTTCTTCGGAATATTGTAA+AGG + Chr7:57922796-57922815 None:intergenic 30.0%
TTAAACTCTTGAGAGAAGAA+AGG + Chr7:57923106-57923125 None:intergenic 30.0%
TTGAAGTGATGTATTGTGAA+GGG - Chr7:57921722-57921741 MsG0780039099.01.T01:intron 30.0%
! CAACGAAAGATTTTGTAAAC+TGG + Chr7:57923456-57923475 None:intergenic 30.0%
! GAAAGATTTTGTAAACTGGA+CGG + Chr7:57923452-57923471 None:intergenic 30.0%
! TGACTTGTCTTCAAACTATA+TGG - Chr7:57923293-57923312 MsG0780039099.01.T01:CDS 30.0%
!! CGTTTTTGTTGTAAGACAAT+AGG + Chr7:57921638-57921657 None:intergenic 30.0%
AAGGATAGAATGACTTGACT+TGG + Chr7:57921570-57921589 None:intergenic 35.0%
AATATGAAGAGCTTCTCAGT+AGG - Chr7:57921667-57921686 MsG0780039099.01.T01:intron 35.0%
CAAAACGGTCTGAAAAACTA+AGG + Chr7:57922416-57922435 None:intergenic 35.0%
CACTTCATATTTACACAGTG+AGG - Chr7:57922281-57922300 MsG0780039099.01.T01:CDS 35.0%
GAAGTAACCTTGATTAGTAG+TGG + Chr7:57922064-57922083 None:intergenic 35.0%
GAGATTTGGAAGACCATTTA+GGG + Chr7:57923513-57923532 None:intergenic 35.0%
GATCTCAAGATTCTTCAATG+AGG + Chr7:57922747-57922766 None:intergenic 35.0%
GTCAATAAAATCCTGATCCT+CGG + Chr7:57921938-57921957 None:intergenic 35.0%
TATGGACCTCTAATCATGTA+TGG - Chr7:57922981-57923000 MsG0780039099.01.T01:intron 35.0%
TCAAAATATATGAGGCAAGC+AGG + Chr7:57922632-57922651 None:intergenic 35.0%
TCAATAAAATCCTGATCCTC+GGG + Chr7:57921937-57921956 None:intergenic 35.0%
TGAGATTTGGAAGACCATTT+AGG + Chr7:57923514-57923533 None:intergenic 35.0%
TGTCATTCCTTAGATCAGTA+AGG + Chr7:57921589-57921608 None:intergenic 35.0%
TTAAACTCTTGAGGGAAGAA+AGG + Chr7:57922856-57922875 None:intergenic 35.0%
TTAAGTCGCAACAACTTGAA+TGG - Chr7:57923545-57923564 MsG0780039099.01.T01:CDS 35.0%
TTGATTAGTAGTGGTGCAAT+CGG + Chr7:57922055-57922074 None:intergenic 35.0%
! AAGTCAAGAGATCTGAGATT+TGG + Chr7:57923527-57923546 None:intergenic 35.0%
! GACACAGATCTTCATTTTCA+AGG - Chr7:57922568-57922587 MsG0780039099.01.T01:intron 35.0%
!! CAGATCTTCATTTTCAAGGT+AGG - Chr7:57922572-57922591 MsG0780039099.01.T01:intron 35.0%
!! CTTAGTTTTTCAGACCGTTT+TGG - Chr7:57922414-57922433 MsG0780039099.01.T01:intron 35.0%
!! GTGTAAATATGAAGTGTCGT+CGG + Chr7:57922277-57922296 None:intergenic 35.0%
AAGGGGATTCACATCTTTGA+AGG - Chr7:57922519-57922538 MsG0780039099.01.T01:intron 40.0%
AAGGTCCAATTTGAGGGATT+GGG + Chr7:57921960-57921979 None:intergenic 40.0%
AATGAGATGACGACAAACCT+AGG + Chr7:57923329-57923348 None:intergenic 40.0%
AGTTGTTGTGACTCAAGTCA+AGG + Chr7:57923049-57923068 None:intergenic 40.0%
ATGAAATCCTGCCATCACTA+AGG - Chr7:57922500-57922519 MsG0780039099.01.T01:intron 40.0%
ATGAGATGACGACAAACCTA+GGG + Chr7:57923328-57923347 None:intergenic 40.0%
ATTGACCCAATCCCTCAAAT+TGG - Chr7:57921952-57921971 MsG0780039099.01.T01:CDS 40.0%
CAGAGAATCATGGATTTGCA+TGG - Chr7:57923426-57923445 MsG0780039099.01.T01:CDS 40.0%
GATATTGCATCAGCTCTTAG+TGG - Chr7:57922830-57922849 MsG0780039099.01.T01:CDS 40.0%
GATTGCACCACTACTAATCA+AGG - Chr7:57922054-57922073 MsG0780039099.01.T01:CDS 40.0%
TGAAATCCTGCCATCACTAA+GGG - Chr7:57922501-57922520 MsG0780039099.01.T01:intron 40.0%
TGAAGACTCTTGACCTATCA+GGG - Chr7:57922019-57922038 MsG0780039099.01.T01:CDS 40.0%
TGTATACAAGGAAGGCTATC+TGG - Chr7:57922679-57922698 MsG0780039099.01.T01:intron 40.0%
TTACGCAGGGTTGAACAATT+TGG - Chr7:57922149-57922168 MsG0780039099.01.T01:intron 40.0%
TTGAAGACTCTTGACCTATC+AGG - Chr7:57922018-57922037 MsG0780039099.01.T01:CDS 40.0%
TTGACGCAGATTGTTGTGAA+TGG - Chr7:57921851-57921870 MsG0780039099.01.T01:intron 40.0%
! GTGTCACTGAAGTTGTTCTT+CGG + Chr7:57922809-57922828 None:intergenic 40.0%
!! CATTTTCAAGGTAGGCTATC+TGG - Chr7:57922580-57922599 MsG0780039099.01.T01:intron 40.0%
AAGCCAGAGAGTTTCCCAAA+CGG + Chr7:57921789-57921808 None:intergenic 45.0%
ACTGGGCATAAGCTTGAGTT+TGG + Chr7:57921914-57921933 None:intergenic 45.0%
ATGAAGAGCTTCTCAGTAGG+TGG - Chr7:57921670-57921689 MsG0780039099.01.T01:intron 45.0%
CAAGGTCCAATTTGAGGGAT+TGG + Chr7:57921961-57921980 None:intergenic 45.0%
CAATCCCTCAAATTGGACCT+TGG - Chr7:57921959-57921978 MsG0780039099.01.T01:CDS 45.0%
CTCAAGTCTCTATCGTTAGC+TGG - Chr7:57922246-57922265 MsG0780039099.01.T01:CDS 45.0%
GAAATCCTGCCATCACTAAG+GGG - Chr7:57922502-57922521 MsG0780039099.01.T01:intron 45.0%
GATGTGAATCCCCTTAGTGA+TGG + Chr7:57922514-57922533 None:intergenic 45.0%
GCAGATTGTTGTGAATGGAG+CGG - Chr7:57921856-57921875 MsG0780039099.01.T01:intron 45.0%
GTCTCTATCGTTAGCTGGAT+CGG - Chr7:57922251-57922270 MsG0780039099.01.T01:CDS 45.0%
TATATGGACTCATTGCCCCT+AGG - Chr7:57923309-57923328 MsG0780039099.01.T01:CDS 45.0%
TGAGATGACGACAAACCTAG+GGG + Chr7:57923327-57923346 None:intergenic 45.0%
TTTCCGTTTGGGAAACTCTC+TGG - Chr7:57921783-57921802 MsG0780039099.01.T01:CDS 45.0%
! CTTGAGTTTGGTGACTCTTC+CGG + Chr7:57921902-57921921 None:intergenic 45.0%
! TCTCGGCATTCTGTCTTGTT+TGG - Chr7:57922209-57922228 MsG0780039099.01.T01:CDS 45.0%
!! ACTTGACTTGGCAGTCAACT+CGG + Chr7:57921558-57921577 None:intergenic 45.0%
!! GGCATTCTGTCTTGTTTGGA+TGG - Chr7:57922213-57922232 MsG0780039099.01.T01:CDS 45.0%
AAAATCCTGATCCTCGGGAC+TGG + Chr7:57921932-57921951 None:intergenic 50.0%
AAATCCTGATCCTCGGGACT+GGG + Chr7:57921931-57921950 None:intergenic 50.0%
ACCTTGGCAGCCTAACTACT+CGG - Chr7:57921975-57921994 MsG0780039099.01.T01:CDS 50.0%
ACTCTTGACCTATCAGGGTC+TGG - Chr7:57922024-57922043 MsG0780039099.01.T01:CDS 50.0%
CGGATATTCCAGACCCTGAT+AGG + Chr7:57922035-57922054 None:intergenic 50.0%
GCTGCCAAGGTCCAATTTGA+GGG + Chr7:57921966-57921985 None:intergenic 50.0%
GGTACTCGTCGCTGTTTGAA+AGG + Chr7:57922775-57922794 None:intergenic 50.0%
GTTGAATGCAACACCACCAC+CGG - Chr7:57921880-57921899 MsG0780039099.01.T01:intron 50.0%
GTTTGGGAAACTCTCTGGCT+TGG - Chr7:57921788-57921807 MsG0780039099.01.T01:CDS 50.0%
TGAATCCCCTTAGTGATGGC+AGG + Chr7:57922510-57922529 None:intergenic 50.0%
GGCTGCCAAGGTCCAATTTG+AGG + Chr7:57921967-57921986 None:intergenic 55.0%
TCCGAGTAGTTAGGCTGCCA+AGG + Chr7:57921979-57921998 None:intergenic 55.0%
! CGTCGCTGTTTGAAAGGTGC+AGG + Chr7:57922769-57922788 None:intergenic 55.0%
! GAGTTTGGTGACTCTTCCGG+TGG + Chr7:57921899-57921918 None:intergenic 55.0%
! TTTGGTGACTCTTCCGGTGG+TGG + Chr7:57921896-57921915 None:intergenic 55.0%
CAAGCTTATGCCCAGTCCCG+AGG - Chr7:57921918-57921937 MsG0780039099.01.T01:intron 60.0%
TATGCCCAGTCCCGAGGATC+AGG - Chr7:57921924-57921943 MsG0780039099.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 57921518 57923595 57921518 ID=MsG0780039099.01;Name=MsG0780039099.01
Chr7 mRNA 57921518 57923595 57921518 ID=MsG0780039099.01.T01;Parent=MsG0780039099.01;Name=MsG0780039099.01.T01;_AED=0.41;_eAED=0.42;_QI=0|0|0|0.85|0.66|0.57|7|0|394
Chr7 exon 57923543 57923595 57923543 ID=MsG0780039099.01.T01:exon:6604;Parent=MsG0780039099.01.T01
Chr7 exon 57923038 57923450 57923038 ID=MsG0780039099.01.T01:exon:6603;Parent=MsG0780039099.01.T01
Chr7 exon 57922801 57922956 57922801 ID=MsG0780039099.01.T01:exon:6602;Parent=MsG0780039099.01.T01
Chr7 exon 57922199 57922378 57922199 ID=MsG0780039099.01.T01:exon:6601;Parent=MsG0780039099.01.T01
Chr7 exon 57921949 57922095 57921949 ID=MsG0780039099.01.T01:exon:6600;Parent=MsG0780039099.01.T01
Chr7 exon 57921783 57921851 57921783 ID=MsG0780039099.01.T01:exon:6599;Parent=MsG0780039099.01.T01
Chr7 exon 57921518 57921684 57921518 ID=MsG0780039099.01.T01:exon:6598;Parent=MsG0780039099.01.T01
Chr7 CDS 57923543 57923595 57923543 ID=MsG0780039099.01.T01:cds;Parent=MsG0780039099.01.T01
Chr7 CDS 57923038 57923450 57923038 ID=MsG0780039099.01.T01:cds;Parent=MsG0780039099.01.T01
Chr7 CDS 57922801 57922956 57922801 ID=MsG0780039099.01.T01:cds;Parent=MsG0780039099.01.T01
Chr7 CDS 57922199 57922378 57922199 ID=MsG0780039099.01.T01:cds;Parent=MsG0780039099.01.T01
Chr7 CDS 57921949 57922095 57921949 ID=MsG0780039099.01.T01:cds;Parent=MsG0780039099.01.T01
Chr7 CDS 57921783 57921851 57921783 ID=MsG0780039099.01.T01:cds;Parent=MsG0780039099.01.T01
Chr7 CDS 57921518 57921684 57921518 ID=MsG0780039099.01.T01:cds;Parent=MsG0780039099.01.T01
Gene Sequence

>MsG0780039099.01.T01

ATGGAAGTCTTCAACACGGCGCATACAATAGAAACAACCGAGTTGACTGCCAAAAGAAATATGAAGAGCTTCTCAGTAGGTGGCGTGTTTCTGTTACTTTTCGTTTTTTCAATTGAAGTGATGTATTGTGAAGGGTGTTTGAAGCAAGAGAGAGCAGCTCTTATTGATATGAGTTTCCGTTTGGGAAACTCTCTGGCTTGGACACGCAACATTTTCGATGATTATTATGACGTTAATAAAATTGACGCAGATTGTTGTGAATGGAGCGGAGTTGAATGCAACACCACCACCGGAAGAGTCACCAAACTCAAGCTTATGCCCAGTCCCGAGGATCAGGATTTTATTGACCCAATCCCTCAAATTGGACCTTGGCAGCCTAACTACTCGGATTTTGTAATCTTCAAAGATTTGAAGACTCTTGACCTATCAGGGTCTGGAATATCCGATTGCACCACTACTAATCAAGGGTTGAACAATTTGGAAGTTCTTGATTTAAATTTAAATAATTTCAAGAATGCTCTCGGCATTCTGTCTTGTTTGGATGGACTTTCTTCTCTCAAGTCTCTATCGTTAGCTGGATCGGCCGACGACACTTCATATTTACACAGTGAGGCAAAATATAGATTATGTGCCTCATTGAAGAATCTTGAGATCCTGCACCTTTCAAACAGCGACGAGTACCTTTACAATATTCCGAAGAACAACTTCAGTGACACTGATATTGCATCAGCTCTTAGTGGCCTTTCTTCCCTCAAGAGTTTAAATTTAGCAGGGAGTGAAATTACTCTGAGATCAATTCATAATATATCAAAACTGAGGTCTTTGGAGATCCTTGACTTGAGTCACAACAACTTCAATGACACTGATATTGCATCAGCTCTTAGTGGCCTTTCTTCTCTCAAGAGTTTAAATTTACAAGAGAGTAAAATTACTCTGGGATCAATTCATAATATATCAAAACTGAAGAGATTGGAGATCCTTGACTTGTCTTCAAACTATATGGACTCATTGCCCCTAGAGAATCATGGATTTGCATGGCCGTCCAGTTTACAAAATCTTTCGTTGAGCTTCAACCGTTTGAGTAACAACATTATTTCATCCCTAAATGGTCTTCCAAATCTCAGATCTCTTGACTTAAGTCGCAACAACTTGAATGGATCACTTGATATTAGTGGTGAATATTAA

Protein sequence

>MsG0780039099.01.T01

MEVFNTAHTIETTELTAKRNMKSFSVGGVFLLLFVFSIEVMYCEGCLKQERAALIDMSFRLGNSLAWTRNIFDDYYDVNKIDADCCEWSGVECNTTTGRVTKLKLMPSPEDQDFIDPIPQIGPWQPNYSDFVIFKDLKTLDLSGSGISDCTTTNQGLNNLEVLDLNLNNFKNALGILSCLDGLSSLKSLSLAGSADDTSYLHSEAKYRLCASLKNLEILHLSNSDEYLYNIPKNNFSDTDIASALSGLSSLKSLNLAGSEITLRSIHNISKLRSLEILDLSHNNFNDTDIASALSGLSSLKSLNLQESKITLGSIHNISKLKRLEILDLSSNYMDSLPLENHGFAWPSSLQNLSLSFNRLSNNIISSLNGLPNLRSLDLSRNNLNGSLDISGEY*