Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780039099.01.T01 | XP_004514486.1 | 53.476 | 374 | 130 | 8 | 25 | 392 | 3 | 338 | 8.42E-80 | 277 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780039099.01.T01 | F4I9S3 | 29.129 | 333 | 187 | 10 | 21 | 331 | 1 | 306 | 1.55E-20 | 97.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780039099.01.T01 | A0A1S2Z3M7 | 53.476 | 374 | 130 | 8 | 25 | 392 | 3 | 338 | 4.02e-80 | 277 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0480019191.01 | MsG0780039099.01 | 0.803736 | 3.023223e-49 | 1.530944e-46 |
MsG0480019195.01 | MsG0780039099.01 | 0.801182 | 1.015644e-48 | 4.819223e-46 |
MsG0580029185.01 | MsG0780039099.01 | 0.809988 | 1.441009e-50 | 8.584888e-48 |
MsG0780036613.01 | MsG0780039099.01 | 0.804849 | 1.772875e-49 | 9.239146e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780039099.01.T01 | MTR_0474s0020 | 50.730 | 274 | 84 | 11 | 21 | 286 | 1 | 231 | 6.13e-50 | 168 |
MsG0780039099.01.T01 | MTR_0474s0020 | 41.689 | 379 | 102 | 13 | 21 | 392 | 1 | 267 | 7.84e-45 | 157 |
MsG0780039099.01.T01 | MTR_7g066640 | 49.533 | 214 | 66 | 6 | 44 | 257 | 16 | 187 | 3.82e-42 | 147 |
MsG0780039099.01.T01 | MTR_7g066600 | 49.261 | 203 | 64 | 6 | 29 | 219 | 8 | 183 | 2.28e-38 | 137 |
MsG0780039099.01.T01 | MTR_4g015930 | 31.217 | 378 | 199 | 17 | 30 | 388 | 9 | 344 | 8.85e-24 | 104 |
MsG0780039099.01.T01 | MTR_4g015930 | 31.217 | 378 | 199 | 17 | 30 | 388 | 9 | 344 | 9.97e-24 | 103 |
MsG0780039099.01.T01 | MTR_4g015930 | 31.217 | 378 | 199 | 17 | 30 | 388 | 9 | 344 | 1.22e-23 | 103 |
MsG0780039099.01.T01 | MTR_4g016810 | 29.396 | 381 | 216 | 16 | 26 | 391 | 3 | 345 | 5.53e-18 | 86.3 |
MsG0780039099.01.T01 | MTR_2g016200 | 27.151 | 372 | 222 | 13 | 44 | 388 | 28 | 377 | 9.56e-17 | 82.8 |
MsG0780039099.01.T01 | MTR_7g014430 | 29.787 | 329 | 184 | 11 | 84 | 388 | 60 | 365 | 2.70e-16 | 81.3 |
MsG0780039099.01.T01 | MTR_4g016870 | 30.932 | 236 | 131 | 10 | 26 | 257 | 7 | 214 | 2.43e-15 | 75.9 |
MsG0780039099.01.T01 | MTR_2g017420 | 29.563 | 389 | 223 | 16 | 29 | 392 | 13 | 375 | 6.15e-15 | 77.4 |
MsG0780039099.01.T01 | MTR_3g093930 | 34.831 | 267 | 139 | 13 | 137 | 394 | 328 | 568 | 1.16e-14 | 76.3 |
MsG0780039099.01.T01 | MTR_8g089000 | 32.919 | 322 | 177 | 14 | 80 | 391 | 62 | 354 | 1.29e-14 | 76.3 |
MsG0780039099.01.T01 | MTR_4g040330 | 29.494 | 356 | 201 | 17 | 46 | 386 | 29 | 349 | 6.33e-14 | 73.9 |
MsG0780039099.01.T01 | MTR_5g069580 | 28.382 | 377 | 201 | 14 | 19 | 388 | 3 | 317 | 8.45e-14 | 73.6 |
MsG0780039099.01.T01 | MTR_2g450870 | 29.949 | 394 | 188 | 21 | 45 | 388 | 31 | 386 | 1.67e-13 | 72.8 |
MsG0780039099.01.T01 | MTR_2g017480 | 27.907 | 387 | 185 | 14 | 46 | 393 | 34 | 365 | 6.40e-13 | 70.9 |
MsG0780039099.01.T01 | MTR_4g016850 | 28.435 | 313 | 186 | 12 | 30 | 335 | 9 | 290 | 6.55e-13 | 70.9 |
MsG0780039099.01.T01 | MTR_7g073290 | 32.090 | 268 | 150 | 10 | 134 | 394 | 296 | 538 | 7.19e-13 | 70.9 |
MsG0780039099.01.T01 | MTR_8g036920 | 27.540 | 374 | 194 | 13 | 46 | 394 | 22 | 343 | 8.60e-13 | 69.3 |
MsG0780039099.01.T01 | MTR_6g038670 | 26.872 | 454 | 196 | 19 | 21 | 390 | 4 | 405 | 8.94e-13 | 70.5 |
MsG0780039099.01.T01 | MTR_1g101250 | 25.558 | 403 | 220 | 14 | 29 | 388 | 8 | 373 | 1.29e-12 | 70.1 |
MsG0780039099.01.T01 | MTR_2g017470 | 27.989 | 368 | 206 | 14 | 46 | 392 | 34 | 363 | 1.35e-12 | 70.1 |
MsG0780039099.01.T01 | MTR_6g016130 | 28.686 | 373 | 195 | 17 | 38 | 390 | 23 | 344 | 1.47e-12 | 69.7 |
MsG0780039099.01.T01 | MTR_3g048910 | 32.095 | 377 | 195 | 22 | 29 | 384 | 5 | 341 | 1.53e-12 | 69.7 |
MsG0780039099.01.T01 | MTR_6g016060 | 28.418 | 373 | 202 | 16 | 35 | 390 | 20 | 344 | 1.72e-12 | 68.9 |
MsG0780039099.01.T01 | MTR_6g016090 | 28.418 | 373 | 202 | 16 | 35 | 390 | 20 | 344 | 1.72e-12 | 68.9 |
MsG0780039099.01.T01 | MTR_6g016120 | 28.418 | 373 | 202 | 16 | 35 | 390 | 20 | 344 | 1.72e-12 | 68.9 |
MsG0780039099.01.T01 | MTR_6g016085 | 28.418 | 373 | 202 | 16 | 35 | 390 | 20 | 344 | 1.72e-12 | 68.9 |
MsG0780039099.01.T01 | MTR_6g016100 | 28.418 | 373 | 202 | 16 | 35 | 390 | 20 | 344 | 1.72e-12 | 68.9 |
MsG0780039099.01.T01 | MTR_6g016055 | 28.418 | 373 | 202 | 16 | 35 | 390 | 20 | 344 | 1.72e-12 | 68.9 |
MsG0780039099.01.T01 | MTR_6g016115 | 28.418 | 373 | 202 | 16 | 35 | 390 | 20 | 344 | 1.72e-12 | 68.9 |
MsG0780039099.01.T01 | MTR_6g016075 | 28.418 | 373 | 202 | 16 | 35 | 390 | 20 | 344 | 1.72e-12 | 68.9 |
MsG0780039099.01.T01 | MTR_6g016070 | 28.418 | 373 | 202 | 16 | 35 | 390 | 20 | 344 | 1.72e-12 | 68.9 |
MsG0780039099.01.T01 | MTR_6g016065 | 28.418 | 373 | 202 | 16 | 35 | 390 | 20 | 344 | 1.72e-12 | 68.9 |
MsG0780039099.01.T01 | MTR_6g016105 | 28.418 | 373 | 202 | 16 | 35 | 390 | 20 | 344 | 1.72e-12 | 68.9 |
MsG0780039099.01.T01 | MTR_6g016110 | 28.418 | 373 | 202 | 16 | 35 | 390 | 20 | 344 | 1.72e-12 | 68.9 |
MsG0780039099.01.T01 | MTR_6g016095 | 28.418 | 373 | 202 | 16 | 35 | 390 | 20 | 344 | 1.72e-12 | 68.9 |
MsG0780039099.01.T01 | MTR_6g016125 | 28.418 | 373 | 202 | 16 | 35 | 390 | 20 | 344 | 1.72e-12 | 68.9 |
MsG0780039099.01.T01 | MTR_6g016080 | 28.418 | 373 | 202 | 16 | 35 | 390 | 20 | 344 | 1.72e-12 | 68.9 |
MsG0780039099.01.T01 | MTR_3g449240 | 31.546 | 317 | 174 | 15 | 82 | 381 | 60 | 350 | 2.49e-12 | 68.9 |
MsG0780039099.01.T01 | MTR_2g017785 | 28.718 | 390 | 222 | 15 | 22 | 386 | 5 | 363 | 2.69e-12 | 68.6 |
MsG0780039099.01.T01 | MTR_8g088970 | 32.278 | 316 | 178 | 11 | 84 | 391 | 62 | 349 | 2.86e-12 | 68.9 |
MsG0780039099.01.T01 | MTR_7g066620 | 56.098 | 82 | 7 | 2 | 340 | 392 | 10 | 91 | 3.17e-12 | 68.9 |
MsG0780039099.01.T01 | MTR_0087s0050 | 28.691 | 359 | 181 | 13 | 39 | 385 | 24 | 319 | 3.24e-12 | 68.6 |
MsG0780039099.01.T01 | MTR_4g028090 | 30.655 | 336 | 173 | 13 | 79 | 388 | 52 | 353 | 3.89e-12 | 68.6 |
MsG0780039099.01.T01 | MTR_4g028090 | 32.864 | 213 | 121 | 5 | 183 | 394 | 264 | 455 | 9.34e-11 | 64.3 |
MsG0780039099.01.T01 | MTR_6g038940 | 27.034 | 381 | 198 | 14 | 15 | 379 | 1 | 317 | 3.97e-12 | 68.6 |
MsG0780039099.01.T01 | MTR_5g085970 | 27.828 | 442 | 213 | 19 | 26 | 390 | 14 | 426 | 6.40e-12 | 67.8 |
MsG0780039099.01.T01 | MTR_3g452850 | 28.205 | 351 | 189 | 13 | 46 | 391 | 10 | 302 | 7.93e-12 | 67.4 |
MsG0780039099.01.T01 | MTR_6g471240 | 27.545 | 334 | 205 | 9 | 80 | 392 | 61 | 378 | 1.00e-11 | 67.4 |
MsG0780039099.01.T01 | MTR_3g026990 | 28.250 | 400 | 204 | 18 | 46 | 391 | 33 | 403 | 1.14e-11 | 67.0 |
MsG0780039099.01.T01 | MTR_2g055690 | 26.972 | 393 | 195 | 16 | 45 | 386 | 31 | 382 | 1.33e-11 | 67.0 |
MsG0780039099.01.T01 | MTR_5g063760 | 28.198 | 383 | 219 | 15 | 31 | 388 | 3 | 354 | 1.44e-11 | 66.6 |
MsG0780039099.01.T01 | MTR_4g417270 | 27.103 | 428 | 220 | 17 | 46 | 394 | 30 | 444 | 1.87e-11 | 66.6 |
MsG0780039099.01.T01 | MTR_3g009400 | 33.333 | 264 | 149 | 10 | 130 | 388 | 272 | 513 | 1.99e-11 | 66.2 |
MsG0780039099.01.T01 | MTR_6g038820 | 25.566 | 442 | 229 | 17 | 29 | 389 | 15 | 437 | 2.05e-11 | 65.9 |
MsG0780039099.01.T01 | MTR_1g069470 | 29.042 | 334 | 171 | 11 | 70 | 388 | 42 | 324 | 2.22e-11 | 66.2 |
MsG0780039099.01.T01 | MTR_4g017260 | 28.271 | 428 | 215 | 19 | 46 | 394 | 19 | 433 | 2.60e-11 | 65.9 |
MsG0780039099.01.T01 | MTR_6g016050 | 28.649 | 370 | 193 | 17 | 41 | 390 | 1122 | 1440 | 3.19e-11 | 65.9 |
MsG0780039099.01.T01 | MTR_2g032560 | 29.358 | 327 | 190 | 12 | 83 | 388 | 50 | 356 | 3.83e-11 | 65.5 |
MsG0780039099.01.T01 | MTR_6g039110 | 27.157 | 394 | 216 | 14 | 26 | 384 | 9 | 366 | 4.00e-11 | 65.5 |
MsG0780039099.01.T01 | MTR_4g018970 | 32.198 | 323 | 178 | 12 | 80 | 391 | 62 | 354 | 4.07e-11 | 65.5 |
MsG0780039099.01.T01 | MTR_4g017600 | 25.316 | 395 | 242 | 12 | 21 | 388 | 1 | 369 | 4.39e-11 | 65.5 |
MsG0780039099.01.T01 | MTR_5g021670 | 30.797 | 276 | 148 | 11 | 136 | 388 | 456 | 711 | 7.10e-11 | 64.7 |
MsG0780039099.01.T01 | MTR_5g096340 | 29.393 | 313 | 169 | 10 | 80 | 388 | 59 | 323 | 9.15e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780039099.01.T01 | AT1G58190 | 29.581 | 382 | 211 | 15 | 21 | 388 | 1 | 338 | 1.20e-22 | 100 |
MsG0780039099.01.T01 | AT1G58190 | 29.129 | 333 | 187 | 10 | 21 | 331 | 1 | 306 | 1.58e-21 | 97.4 |
MsG0780039099.01.T01 | AT1G74170 | 27.390 | 387 | 214 | 14 | 44 | 386 | 25 | 388 | 3.28e-18 | 87.4 |
MsG0780039099.01.T01 | AT1G58190 | 29.508 | 305 | 170 | 13 | 46 | 331 | 37 | 315 | 1.43e-17 | 85.5 |
MsG0780039099.01.T01 | AT1G74180 | 26.027 | 365 | 221 | 14 | 29 | 381 | 12 | 339 | 2.36e-16 | 81.6 |
MsG0780039099.01.T01 | AT1G74180 | 26.724 | 348 | 208 | 13 | 46 | 381 | 13 | 325 | 8.91e-16 | 79.7 |
MsG0780039099.01.T01 | AT1G54470 | 26.471 | 340 | 177 | 13 | 10 | 335 | 88 | 368 | 1.98e-15 | 78.2 |
MsG0780039099.01.T01 | AT2G25470 | 27.095 | 358 | 168 | 12 | 43 | 388 | 10 | 286 | 3.30e-15 | 78.2 |
MsG0780039099.01.T01 | AT2G25470 | 27.095 | 358 | 168 | 12 | 43 | 388 | 28 | 304 | 3.53e-15 | 77.8 |
MsG0780039099.01.T01 | AT1G07390 | 26.340 | 429 | 202 | 19 | 35 | 388 | 27 | 416 | 4.15e-15 | 77.8 |
MsG0780039099.01.T01 | AT2G25470 | 27.095 | 358 | 168 | 12 | 43 | 388 | 28 | 304 | 4.24e-15 | 77.8 |
MsG0780039099.01.T01 | AT1G74190 | 28.155 | 309 | 171 | 10 | 44 | 332 | 25 | 302 | 4.33e-15 | 77.8 |
MsG0780039099.01.T01 | AT3G53240 | 26.948 | 308 | 183 | 10 | 41 | 337 | 1 | 277 | 5.58e-15 | 77.4 |
MsG0780039099.01.T01 | AT1G07390 | 28.261 | 368 | 175 | 17 | 82 | 388 | 34 | 373 | 1.03e-13 | 73.6 |
MsG0780039099.01.T01 | AT3G11080 | 28.451 | 355 | 207 | 15 | 46 | 388 | 38 | 357 | 1.58e-13 | 72.8 |
MsG0780039099.01.T01 | AT3G11080 | 28.451 | 355 | 207 | 15 | 46 | 388 | 38 | 357 | 1.58e-13 | 72.8 |
MsG0780039099.01.T01 | AT5G49290 | 26.271 | 354 | 189 | 12 | 46 | 386 | 13 | 307 | 5.19e-13 | 71.2 |
MsG0780039099.01.T01 | AT5G49290 | 26.271 | 354 | 189 | 12 | 46 | 386 | 13 | 307 | 5.19e-13 | 71.2 |
MsG0780039099.01.T01 | AT5G49290 | 26.271 | 354 | 189 | 12 | 46 | 386 | 13 | 307 | 5.19e-13 | 71.2 |
MsG0780039099.01.T01 | AT5G49290 | 26.271 | 354 | 189 | 12 | 46 | 386 | 27 | 321 | 5.35e-13 | 71.2 |
MsG0780039099.01.T01 | AT5G49290 | 26.271 | 354 | 189 | 12 | 46 | 386 | 27 | 321 | 5.59e-13 | 71.2 |
MsG0780039099.01.T01 | AT3G05660 | 29.450 | 309 | 188 | 9 | 83 | 390 | 67 | 346 | 1.71e-12 | 69.7 |
MsG0780039099.01.T01 | AT5G01890 | 26.888 | 331 | 191 | 13 | 79 | 388 | 49 | 349 | 2.26e-12 | 69.3 |
MsG0780039099.01.T01 | AT3G53240 | 28.137 | 263 | 157 | 8 | 82 | 337 | 4 | 241 | 2.79e-12 | 68.9 |
MsG0780039099.01.T01 | AT3G53240 | 28.137 | 263 | 157 | 8 | 82 | 337 | 4 | 241 | 2.79e-12 | 68.9 |
MsG0780039099.01.T01 | AT4G13920 | 28.158 | 380 | 204 | 11 | 37 | 390 | 17 | 353 | 7.66e-12 | 67.8 |
MsG0780039099.01.T01 | AT5G49290 | 26.899 | 316 | 169 | 10 | 79 | 386 | 18 | 279 | 1.04e-11 | 67.4 |
MsG0780039099.01.T01 | AT2G34930 | 29.156 | 391 | 202 | 14 | 51 | 388 | 45 | 413 | 2.98e-11 | 65.9 |
MsG0780039099.01.T01 | AT5G49290 | 26.214 | 309 | 171 | 11 | 46 | 322 | 13 | 296 | 3.04e-11 | 65.9 |
MsG0780039099.01.T01 | AT1G07390 | 25.132 | 378 | 173 | 17 | 35 | 338 | 27 | 368 | 7.42e-11 | 64.7 |
Find 78 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAGATTTGGAAGACCATTT+AGG | 0.217524 | 7:+57921580 | None:intergenic |
TGACTTGTCTTCAAACTATA+TGG | 0.263069 | 7:-57921798 | MsG0780039099.01.T01:CDS |
TTGAAGACTCTTGACCTATC+AGG | 0.269721 | 7:-57923073 | MsG0780039099.01.T01:CDS |
ATTGACCCAATCCCTCAAAT+TGG | 0.281043 | 7:-57923139 | MsG0780039099.01.T01:CDS |
AACATTATTTCATCCCTAAA+TGG | 0.282995 | 7:-57921594 | MsG0780039099.01.T01:CDS |
TTACGCAGGGTTGAACAATT+TGG | 0.313106 | 7:-57922942 | MsG0780039099.01.T01:intron |
GAGATTTGGAAGACCATTTA+GGG | 0.316440 | 7:+57921581 | None:intergenic |
CTTGAGTTTGGTGACTCTTC+CGG | 0.329135 | 7:+57923192 | None:intergenic |
TATATCAAAACTGAGGTCTT+TGG | 0.336096 | 7:-57922072 | MsG0780039099.01.T01:CDS |
TATTGATATGAGTTTCCGTT+TGG | 0.370709 | 7:-57923320 | MsG0780039099.01.T01:CDS |
CTCAAGAGTTTAAATTTAGC+AGG | 0.383866 | 7:-57922228 | MsG0780039099.01.T01:CDS |
TCTCGGCATTCTGTCTTGTT+TGG | 0.385256 | 7:-57922882 | MsG0780039099.01.T01:CDS |
GTCTCTATCGTTAGCTGGAT+CGG | 0.386662 | 7:-57922840 | MsG0780039099.01.T01:CDS |
CAAGGTCCAATTTGAGGGAT+TGG | 0.391523 | 7:+57923133 | None:intergenic |
TTTCCGTTTGGGAAACTCTC+TGG | 0.396191 | 7:-57923308 | MsG0780039099.01.T01:CDS |
GGCATTCTGTCTTGTTTGGA+TGG | 0.402921 | 7:-57922878 | MsG0780039099.01.T01:CDS |
AAGTCAAGAGATCTGAGATT+TGG | 0.406414 | 7:+57921567 | None:intergenic |
TATATCAAAACTGAAGAGAT+TGG | 0.407531 | 7:-57921828 | MsG0780039099.01.T01:CDS |
ACTGGGCATAAGCTTGAGTT+TGG | 0.424464 | 7:+57923180 | None:intergenic |
TGCTAAATTTAAACTCTTGA+GGG | 0.427106 | 7:+57922230 | None:intergenic |
TATGCCCAGTCCCGAGGATC+AGG | 0.427527 | 7:-57923167 | MsG0780039099.01.T01:CDS |
AAAATCCTGATCCTCGGGAC+TGG | 0.430171 | 7:+57923162 | None:intergenic |
CGGATATTCCAGACCCTGAT+AGG | 0.432667 | 7:+57923059 | None:intergenic |
AAGGTCCAATTTGAGGGATT+GGG | 0.434139 | 7:+57923134 | None:intergenic |
ATTACAAAATCCGAGTAGTT+AGG | 0.436385 | 7:+57923106 | None:intergenic |
GTTTGGGAAACTCTCTGGCT+TGG | 0.441446 | 7:-57923303 | MsG0780039099.01.T01:CDS |
GATATTGCATCAGCTCTTAG+TGG | 0.442598 | 7:-57922011 | MsG0780039099.01.T01:CDS |
GATATTGCATCAGCTCTTAG+TGG | 0.442598 | 7:-57922261 | MsG0780039099.01.T01:CDS |
ATTGATATGAGTTTCCGTTT+GGG | 0.442878 | 7:-57923319 | MsG0780039099.01.T01:CDS |
ACAAGAGAGTAAAATTACTC+TGG | 0.444732 | 7:-57921961 | MsG0780039099.01.T01:CDS |
TTAAACTCTTGAGGGAAGAA+AGG | 0.445109 | 7:+57922238 | None:intergenic |
AATAATTTCAAGAATGCTCT+CGG | 0.458403 | 7:-57922899 | MsG0780039099.01.T01:CDS |
AAATAATGTTGTTACTCAAA+CGG | 0.459868 | 7:+57921607 | None:intergenic |
AATGGATCACTTGATATTAG+TGG | 0.460406 | 7:-57921528 | MsG0780039099.01.T01:CDS |
GGCTGCCAAGGTCCAATTTG+AGG | 0.462869 | 7:+57923127 | None:intergenic |
TTAAGTCGCAACAACTTGAA+TGG | 0.464651 | 7:-57921546 | MsG0780039099.01.T01:CDS |
CTGCTAAATTTAAACTCTTG+AGG | 0.467751 | 7:+57922229 | None:intergenic |
CTCAAGTCTCTATCGTTAGC+TGG | 0.471436 | 7:-57922845 | MsG0780039099.01.T01:CDS |
GCTGCCAAGGTCCAATTTGA+GGG | 0.477607 | 7:+57923128 | None:intergenic |
TTAAACTCTTGAGAGAAGAA+AGG | 0.487200 | 7:+57921988 | None:intergenic |
ACTCTTGACCTATCAGGGTC+TGG | 0.493498 | 7:-57923067 | MsG0780039099.01.T01:CDS |
TTGACGCAGATTGTTGTGAA+TGG | 0.494213 | 7:-57923240 | MsG0780039099.01.T01:CDS |
AAATCCTGATCCTCGGGACT+GGG | 0.494952 | 7:+57923163 | None:intergenic |
GTGTCACTGAAGTTGTTCTT+CGG | 0.497301 | 7:+57922285 | None:intergenic |
TCAATAAAATCCTGATCCTC+GGG | 0.498652 | 7:+57923157 | None:intergenic |
GTCAATAAAATCCTGATCCT+CGG | 0.498981 | 7:+57923156 | None:intergenic |
CGTCGCTGTTTGAAAGGTGC+AGG | 0.504009 | 7:+57922325 | None:intergenic |
TTGATTAGTAGTGGTGCAAT+CGG | 0.506287 | 7:+57923039 | None:intergenic |
TTTGGTGACTCTTCCGGTGG+TGG | 0.518965 | 7:+57923198 | None:intergenic |
TGTTCTTCGGAATATTGTAA+AGG | 0.519792 | 7:+57922298 | None:intergenic |
CAAGAGAGTAAAATTACTCT+GGG | 0.526243 | 7:-57921960 | MsG0780039099.01.T01:CDS |
TGAAGACTCTTGACCTATCA+GGG | 0.534057 | 7:-57923072 | MsG0780039099.01.T01:CDS |
GATTGCACCACTACTAATCA+AGG | 0.538111 | 7:-57923037 | MsG0780039099.01.T01:intron |
ACTTGACTTGGCAGTCAACT+CGG | 0.543522 | 7:+57923536 | None:intergenic |
ACCTTGGCAGCCTAACTACT+CGG | 0.558697 | 7:-57923116 | MsG0780039099.01.T01:CDS |
GGTACTCGTCGCTGTTTGAA+AGG | 0.559407 | 7:+57922319 | None:intergenic |
TCAAGAGTTTAAATTTAGCA+GGG | 0.562867 | 7:-57922227 | MsG0780039099.01.T01:CDS |
TCCGAGTAGTTAGGCTGCCA+AGG | 0.571704 | 7:+57923115 | None:intergenic |
TATATGGACTCATTGCCCCT+AGG | 0.583395 | 7:-57921782 | MsG0780039099.01.T01:intron |
CAATCCCTCAAATTGGACCT+TGG | 0.584297 | 7:-57923132 | MsG0780039099.01.T01:CDS |
CAGAGAATCATGGATTTGCA+TGG | 0.590415 | 7:-57921665 | MsG0780039099.01.T01:CDS |
AAGCCAGAGAGTTTCCCAAA+CGG | 0.591108 | 7:+57923305 | None:intergenic |
GAAGTAACCTTGATTAGTAG+TGG | 0.592996 | 7:+57923030 | None:intergenic |
GTTGAATGCAACACCACCAC+CGG | 0.595679 | 7:-57923211 | MsG0780039099.01.T01:CDS |
TATAGTTTGAAGACAAGTCA+AGG | 0.595705 | 7:+57921801 | None:intergenic |
AGTTGTTGTGACTCAAGTCA+AGG | 0.600534 | 7:+57922045 | None:intergenic |
CAAGCTTATGCCCAGTCCCG+AGG | 0.608788 | 7:-57923173 | MsG0780039099.01.T01:CDS |
ATTGAAGTGATGTATTGTGA+AGG | 0.623055 | 7:-57923370 | MsG0780039099.01.T01:CDS |
ATGAAGAGCTTCTCAGTAGG+TGG | 0.624912 | 7:-57923421 | MsG0780039099.01.T01:CDS |
GAGTTTGGTGACTCTTCCGG+TGG | 0.631932 | 7:+57923195 | None:intergenic |
AATATGAAGAGCTTCTCAGT+AGG | 0.645602 | 7:-57923424 | MsG0780039099.01.T01:CDS |
GTGTAAATATGAAGTGTCGT+CGG | 0.659650 | 7:+57922817 | None:intergenic |
TTGAAGTGATGTATTGTGAA+GGG | 0.663525 | 7:-57923369 | MsG0780039099.01.T01:CDS |
CACTTCATATTTACACAGTG+AGG | 0.667272 | 7:-57922810 | MsG0780039099.01.T01:CDS |
TGCTAGATATATCAAAACTG+AGG | 0.686622 | 7:-57922079 | MsG0780039099.01.T01:intron |
GATCTCAAGATTCTTCAATG+AGG | 0.693046 | 7:+57922347 | None:intergenic |
GCAGATTGTTGTGAATGGAG+CGG | 0.748435 | 7:-57923235 | MsG0780039099.01.T01:CDS |
ATGGATGGAAGTCTTCAACA+CGG | 0.758212 | 7:-57923577 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTAAACCAAATAATAA+AGG | - | Chr7:57922326-57922345 | MsG0780039099.01.T01:CDS | 10.0% |
!! | TTTATTATTCAAAATATATG+AGG | + | Chr7:57922640-57922659 | None:intergenic | 10.0% |
!! | AAATACAATTATTGTATACA+AGG | - | Chr7:57922667-57922686 | MsG0780039099.01.T01:intron | 15.0% |
!! | ATAATATGGAAATGAAAATT+TGG | + | Chr7:57922127-57922146 | None:intergenic | 15.0% |
!! | TATTTATAGCCTTTATTATT+TGG | + | Chr7:57922338-57922357 | None:intergenic | 15.0% |
!!! | GTTTTTGTTTTAAAAACATA+TGG | - | Chr7:57922963-57922982 | MsG0780039099.01.T01:intron | 15.0% |
!! | AAATAATGTTGTTACTCAAA+CGG | + | Chr7:57923487-57923506 | None:intergenic | 20.0% |
!!! | TTTTATTTATCAGAGAATCA+TGG | - | Chr7:57923416-57923435 | MsG0780039099.01.T01:CDS | 20.0% |
! | AACATTATTTCATCCCTAAA+TGG | - | Chr7:57923497-57923516 | MsG0780039099.01.T01:intron | 25.0% |
! | AATAATTTCAAGAATGCTCT+CGG | - | Chr7:57922192-57922211 | MsG0780039099.01.T01:intron | 25.0% |
! | ACAATTATTGTATACAAGGA+AGG | - | Chr7:57922671-57922690 | MsG0780039099.01.T01:intron | 25.0% |
! | GAATTGTATTTGTCTAACAT+TGG | - | Chr7:57922541-57922560 | MsG0780039099.01.T01:intron | 25.0% |
! | GCTTTACTAATTTAATGTGT+AGG | - | Chr7:57922713-57922732 | MsG0780039099.01.T01:intron | 25.0% |
! | TAATGAAATTGTCTCCAAAA+CGG | + | Chr7:57922431-57922450 | None:intergenic | 25.0% |
! | TATATCAAAACTGAAGAGAT+TGG | - | Chr7:57923263-57923282 | MsG0780039099.01.T01:CDS | 25.0% |
! | TATATGTATATGTATTCGCT+AGG | + | Chr7:57923381-57923400 | None:intergenic | 25.0% |
! | TCAAGAGTTTAAATTTAGCA+GGG | - | Chr7:57922864-57922883 | MsG0780039099.01.T01:CDS | 25.0% |
! | TGCTAAATTTAAACTCTTGA+GGG | + | Chr7:57922864-57922883 | None:intergenic | 25.0% |
! | TTCCATATTATTATTACGCA+GGG | - | Chr7:57922136-57922155 | MsG0780039099.01.T01:intron | 25.0% |
! | TTTCCATATTATTATTACGC+AGG | - | Chr7:57922135-57922154 | MsG0780039099.01.T01:intron | 25.0% |
!! | TCATCTCATTTGATAATTTC+TGG | - | Chr7:57923339-57923358 | MsG0780039099.01.T01:CDS | 25.0% |
!!! | GTTTTTGTTGTAAGACAATA+GGG | + | Chr7:57921637-57921656 | None:intergenic | 25.0% |
AACCCTGCGTAATAATAATA+TGG | + | Chr7:57922141-57922160 | None:intergenic | 30.0% | |
AATGGATCACTTGATATTAG+TGG | - | Chr7:57923563-57923582 | MsG0780039099.01.T01:CDS | 30.0% | |
ACAAGAGAGTAAAATTACTC+TGG | - | Chr7:57923130-57923149 | MsG0780039099.01.T01:CDS | 30.0% | |
ACATAACCATACATGATTAG+AGG | + | Chr7:57922990-57923009 | None:intergenic | 30.0% | |
ATTACAAAATCCGAGTAGTT+AGG | + | Chr7:57921988-57922007 | None:intergenic | 30.0% | |
ATTCTATCCTTACTGATCTA+AGG | - | Chr7:57921579-57921598 | MsG0780039099.01.T01:CDS | 30.0% | |
ATTGAAGTGATGTATTGTGA+AGG | - | Chr7:57921721-57921740 | MsG0780039099.01.T01:intron | 30.0% | |
ATTGATATGAGTTTCCGTTT+GGG | - | Chr7:57921772-57921791 | MsG0780039099.01.T01:intron | 30.0% | |
CAAGAGAGTAAAATTACTCT+GGG | - | Chr7:57923131-57923150 | MsG0780039099.01.T01:CDS | 30.0% | |
CTCAAGAGTTTAAATTTAGC+AGG | - | Chr7:57922863-57922882 | MsG0780039099.01.T01:CDS | 30.0% | |
CTGCTAAATTTAAACTCTTG+AGG | + | Chr7:57922865-57922884 | None:intergenic | 30.0% | |
GTACAAATATGTACTAGTGT+TGG | + | Chr7:57922390-57922409 | None:intergenic | 30.0% | |
GTATTTGTCTAACATTGGAT+TGG | - | Chr7:57922546-57922565 | MsG0780039099.01.T01:intron | 30.0% | |
TATAGTTTGAAGACAAGTCA+AGG | + | Chr7:57923293-57923312 | None:intergenic | 30.0% | |
TATATCAAAACTGAGGTCTT+TGG | - | Chr7:57923019-57923038 | MsG0780039099.01.T01:intron | 30.0% | |
TATTGATATGAGTTTCCGTT+TGG | - | Chr7:57921771-57921790 | MsG0780039099.01.T01:intron | 30.0% | |
TGCTAGATATATCAAAACTG+AGG | - | Chr7:57923012-57923031 | MsG0780039099.01.T01:intron | 30.0% | |
TGTTCTTCGGAATATTGTAA+AGG | + | Chr7:57922796-57922815 | None:intergenic | 30.0% | |
TTAAACTCTTGAGAGAAGAA+AGG | + | Chr7:57923106-57923125 | None:intergenic | 30.0% | |
TTGAAGTGATGTATTGTGAA+GGG | - | Chr7:57921722-57921741 | MsG0780039099.01.T01:intron | 30.0% | |
! | CAACGAAAGATTTTGTAAAC+TGG | + | Chr7:57923456-57923475 | None:intergenic | 30.0% |
! | GAAAGATTTTGTAAACTGGA+CGG | + | Chr7:57923452-57923471 | None:intergenic | 30.0% |
! | TGACTTGTCTTCAAACTATA+TGG | - | Chr7:57923293-57923312 | MsG0780039099.01.T01:CDS | 30.0% |
!! | CGTTTTTGTTGTAAGACAAT+AGG | + | Chr7:57921638-57921657 | None:intergenic | 30.0% |
AAGGATAGAATGACTTGACT+TGG | + | Chr7:57921570-57921589 | None:intergenic | 35.0% | |
AATATGAAGAGCTTCTCAGT+AGG | - | Chr7:57921667-57921686 | MsG0780039099.01.T01:intron | 35.0% | |
CAAAACGGTCTGAAAAACTA+AGG | + | Chr7:57922416-57922435 | None:intergenic | 35.0% | |
CACTTCATATTTACACAGTG+AGG | - | Chr7:57922281-57922300 | MsG0780039099.01.T01:CDS | 35.0% | |
GAAGTAACCTTGATTAGTAG+TGG | + | Chr7:57922064-57922083 | None:intergenic | 35.0% | |
GAGATTTGGAAGACCATTTA+GGG | + | Chr7:57923513-57923532 | None:intergenic | 35.0% | |
GATCTCAAGATTCTTCAATG+AGG | + | Chr7:57922747-57922766 | None:intergenic | 35.0% | |
GTCAATAAAATCCTGATCCT+CGG | + | Chr7:57921938-57921957 | None:intergenic | 35.0% | |
TATGGACCTCTAATCATGTA+TGG | - | Chr7:57922981-57923000 | MsG0780039099.01.T01:intron | 35.0% | |
TCAAAATATATGAGGCAAGC+AGG | + | Chr7:57922632-57922651 | None:intergenic | 35.0% | |
TCAATAAAATCCTGATCCTC+GGG | + | Chr7:57921937-57921956 | None:intergenic | 35.0% | |
TGAGATTTGGAAGACCATTT+AGG | + | Chr7:57923514-57923533 | None:intergenic | 35.0% | |
TGTCATTCCTTAGATCAGTA+AGG | + | Chr7:57921589-57921608 | None:intergenic | 35.0% | |
TTAAACTCTTGAGGGAAGAA+AGG | + | Chr7:57922856-57922875 | None:intergenic | 35.0% | |
TTAAGTCGCAACAACTTGAA+TGG | - | Chr7:57923545-57923564 | MsG0780039099.01.T01:CDS | 35.0% | |
TTGATTAGTAGTGGTGCAAT+CGG | + | Chr7:57922055-57922074 | None:intergenic | 35.0% | |
! | AAGTCAAGAGATCTGAGATT+TGG | + | Chr7:57923527-57923546 | None:intergenic | 35.0% |
! | GACACAGATCTTCATTTTCA+AGG | - | Chr7:57922568-57922587 | MsG0780039099.01.T01:intron | 35.0% |
!! | CAGATCTTCATTTTCAAGGT+AGG | - | Chr7:57922572-57922591 | MsG0780039099.01.T01:intron | 35.0% |
!! | CTTAGTTTTTCAGACCGTTT+TGG | - | Chr7:57922414-57922433 | MsG0780039099.01.T01:intron | 35.0% |
!! | GTGTAAATATGAAGTGTCGT+CGG | + | Chr7:57922277-57922296 | None:intergenic | 35.0% |
AAGGGGATTCACATCTTTGA+AGG | - | Chr7:57922519-57922538 | MsG0780039099.01.T01:intron | 40.0% | |
AAGGTCCAATTTGAGGGATT+GGG | + | Chr7:57921960-57921979 | None:intergenic | 40.0% | |
AATGAGATGACGACAAACCT+AGG | + | Chr7:57923329-57923348 | None:intergenic | 40.0% | |
AGTTGTTGTGACTCAAGTCA+AGG | + | Chr7:57923049-57923068 | None:intergenic | 40.0% | |
ATGAAATCCTGCCATCACTA+AGG | - | Chr7:57922500-57922519 | MsG0780039099.01.T01:intron | 40.0% | |
ATGAGATGACGACAAACCTA+GGG | + | Chr7:57923328-57923347 | None:intergenic | 40.0% | |
ATTGACCCAATCCCTCAAAT+TGG | - | Chr7:57921952-57921971 | MsG0780039099.01.T01:CDS | 40.0% | |
CAGAGAATCATGGATTTGCA+TGG | - | Chr7:57923426-57923445 | MsG0780039099.01.T01:CDS | 40.0% | |
GATATTGCATCAGCTCTTAG+TGG | - | Chr7:57922830-57922849 | MsG0780039099.01.T01:CDS | 40.0% | |
GATTGCACCACTACTAATCA+AGG | - | Chr7:57922054-57922073 | MsG0780039099.01.T01:CDS | 40.0% | |
TGAAATCCTGCCATCACTAA+GGG | - | Chr7:57922501-57922520 | MsG0780039099.01.T01:intron | 40.0% | |
TGAAGACTCTTGACCTATCA+GGG | - | Chr7:57922019-57922038 | MsG0780039099.01.T01:CDS | 40.0% | |
TGTATACAAGGAAGGCTATC+TGG | - | Chr7:57922679-57922698 | MsG0780039099.01.T01:intron | 40.0% | |
TTACGCAGGGTTGAACAATT+TGG | - | Chr7:57922149-57922168 | MsG0780039099.01.T01:intron | 40.0% | |
TTGAAGACTCTTGACCTATC+AGG | - | Chr7:57922018-57922037 | MsG0780039099.01.T01:CDS | 40.0% | |
TTGACGCAGATTGTTGTGAA+TGG | - | Chr7:57921851-57921870 | MsG0780039099.01.T01:intron | 40.0% | |
! | GTGTCACTGAAGTTGTTCTT+CGG | + | Chr7:57922809-57922828 | None:intergenic | 40.0% |
!! | CATTTTCAAGGTAGGCTATC+TGG | - | Chr7:57922580-57922599 | MsG0780039099.01.T01:intron | 40.0% |
AAGCCAGAGAGTTTCCCAAA+CGG | + | Chr7:57921789-57921808 | None:intergenic | 45.0% | |
ACTGGGCATAAGCTTGAGTT+TGG | + | Chr7:57921914-57921933 | None:intergenic | 45.0% | |
ATGAAGAGCTTCTCAGTAGG+TGG | - | Chr7:57921670-57921689 | MsG0780039099.01.T01:intron | 45.0% | |
CAAGGTCCAATTTGAGGGAT+TGG | + | Chr7:57921961-57921980 | None:intergenic | 45.0% | |
CAATCCCTCAAATTGGACCT+TGG | - | Chr7:57921959-57921978 | MsG0780039099.01.T01:CDS | 45.0% | |
CTCAAGTCTCTATCGTTAGC+TGG | - | Chr7:57922246-57922265 | MsG0780039099.01.T01:CDS | 45.0% | |
GAAATCCTGCCATCACTAAG+GGG | - | Chr7:57922502-57922521 | MsG0780039099.01.T01:intron | 45.0% | |
GATGTGAATCCCCTTAGTGA+TGG | + | Chr7:57922514-57922533 | None:intergenic | 45.0% | |
GCAGATTGTTGTGAATGGAG+CGG | - | Chr7:57921856-57921875 | MsG0780039099.01.T01:intron | 45.0% | |
GTCTCTATCGTTAGCTGGAT+CGG | - | Chr7:57922251-57922270 | MsG0780039099.01.T01:CDS | 45.0% | |
TATATGGACTCATTGCCCCT+AGG | - | Chr7:57923309-57923328 | MsG0780039099.01.T01:CDS | 45.0% | |
TGAGATGACGACAAACCTAG+GGG | + | Chr7:57923327-57923346 | None:intergenic | 45.0% | |
TTTCCGTTTGGGAAACTCTC+TGG | - | Chr7:57921783-57921802 | MsG0780039099.01.T01:CDS | 45.0% | |
! | CTTGAGTTTGGTGACTCTTC+CGG | + | Chr7:57921902-57921921 | None:intergenic | 45.0% |
! | TCTCGGCATTCTGTCTTGTT+TGG | - | Chr7:57922209-57922228 | MsG0780039099.01.T01:CDS | 45.0% |
!! | ACTTGACTTGGCAGTCAACT+CGG | + | Chr7:57921558-57921577 | None:intergenic | 45.0% |
!! | GGCATTCTGTCTTGTTTGGA+TGG | - | Chr7:57922213-57922232 | MsG0780039099.01.T01:CDS | 45.0% |
AAAATCCTGATCCTCGGGAC+TGG | + | Chr7:57921932-57921951 | None:intergenic | 50.0% | |
AAATCCTGATCCTCGGGACT+GGG | + | Chr7:57921931-57921950 | None:intergenic | 50.0% | |
ACCTTGGCAGCCTAACTACT+CGG | - | Chr7:57921975-57921994 | MsG0780039099.01.T01:CDS | 50.0% | |
ACTCTTGACCTATCAGGGTC+TGG | - | Chr7:57922024-57922043 | MsG0780039099.01.T01:CDS | 50.0% | |
CGGATATTCCAGACCCTGAT+AGG | + | Chr7:57922035-57922054 | None:intergenic | 50.0% | |
GCTGCCAAGGTCCAATTTGA+GGG | + | Chr7:57921966-57921985 | None:intergenic | 50.0% | |
GGTACTCGTCGCTGTTTGAA+AGG | + | Chr7:57922775-57922794 | None:intergenic | 50.0% | |
GTTGAATGCAACACCACCAC+CGG | - | Chr7:57921880-57921899 | MsG0780039099.01.T01:intron | 50.0% | |
GTTTGGGAAACTCTCTGGCT+TGG | - | Chr7:57921788-57921807 | MsG0780039099.01.T01:CDS | 50.0% | |
TGAATCCCCTTAGTGATGGC+AGG | + | Chr7:57922510-57922529 | None:intergenic | 50.0% | |
GGCTGCCAAGGTCCAATTTG+AGG | + | Chr7:57921967-57921986 | None:intergenic | 55.0% | |
TCCGAGTAGTTAGGCTGCCA+AGG | + | Chr7:57921979-57921998 | None:intergenic | 55.0% | |
! | CGTCGCTGTTTGAAAGGTGC+AGG | + | Chr7:57922769-57922788 | None:intergenic | 55.0% |
! | GAGTTTGGTGACTCTTCCGG+TGG | + | Chr7:57921899-57921918 | None:intergenic | 55.0% |
! | TTTGGTGACTCTTCCGGTGG+TGG | + | Chr7:57921896-57921915 | None:intergenic | 55.0% |
CAAGCTTATGCCCAGTCCCG+AGG | - | Chr7:57921918-57921937 | MsG0780039099.01.T01:intron | 60.0% | |
TATGCCCAGTCCCGAGGATC+AGG | - | Chr7:57921924-57921943 | MsG0780039099.01.T01:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 57921518 | 57923595 | 57921518 | ID=MsG0780039099.01;Name=MsG0780039099.01 |
Chr7 | mRNA | 57921518 | 57923595 | 57921518 | ID=MsG0780039099.01.T01;Parent=MsG0780039099.01;Name=MsG0780039099.01.T01;_AED=0.41;_eAED=0.42;_QI=0|0|0|0.85|0.66|0.57|7|0|394 |
Chr7 | exon | 57923543 | 57923595 | 57923543 | ID=MsG0780039099.01.T01:exon:6604;Parent=MsG0780039099.01.T01 |
Chr7 | exon | 57923038 | 57923450 | 57923038 | ID=MsG0780039099.01.T01:exon:6603;Parent=MsG0780039099.01.T01 |
Chr7 | exon | 57922801 | 57922956 | 57922801 | ID=MsG0780039099.01.T01:exon:6602;Parent=MsG0780039099.01.T01 |
Chr7 | exon | 57922199 | 57922378 | 57922199 | ID=MsG0780039099.01.T01:exon:6601;Parent=MsG0780039099.01.T01 |
Chr7 | exon | 57921949 | 57922095 | 57921949 | ID=MsG0780039099.01.T01:exon:6600;Parent=MsG0780039099.01.T01 |
Chr7 | exon | 57921783 | 57921851 | 57921783 | ID=MsG0780039099.01.T01:exon:6599;Parent=MsG0780039099.01.T01 |
Chr7 | exon | 57921518 | 57921684 | 57921518 | ID=MsG0780039099.01.T01:exon:6598;Parent=MsG0780039099.01.T01 |
Chr7 | CDS | 57923543 | 57923595 | 57923543 | ID=MsG0780039099.01.T01:cds;Parent=MsG0780039099.01.T01 |
Chr7 | CDS | 57923038 | 57923450 | 57923038 | ID=MsG0780039099.01.T01:cds;Parent=MsG0780039099.01.T01 |
Chr7 | CDS | 57922801 | 57922956 | 57922801 | ID=MsG0780039099.01.T01:cds;Parent=MsG0780039099.01.T01 |
Chr7 | CDS | 57922199 | 57922378 | 57922199 | ID=MsG0780039099.01.T01:cds;Parent=MsG0780039099.01.T01 |
Chr7 | CDS | 57921949 | 57922095 | 57921949 | ID=MsG0780039099.01.T01:cds;Parent=MsG0780039099.01.T01 |
Chr7 | CDS | 57921783 | 57921851 | 57921783 | ID=MsG0780039099.01.T01:cds;Parent=MsG0780039099.01.T01 |
Chr7 | CDS | 57921518 | 57921684 | 57921518 | ID=MsG0780039099.01.T01:cds;Parent=MsG0780039099.01.T01 |
Gene Sequence |
Protein sequence |