AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039203.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039203.01.T01 MTR_7g067940 78.161 261 20 4 1 227 1 258 1.10e-133 392
MsG0780039203.01.T01 MTR_7g067970 52.688 279 72 7 1 223 1 275 7.35e-73 235
MsG0780039203.01.T01 MTR_7g068070 51.439 278 65 6 1 212 1 274 1.67e-71 232
MsG0780039203.01.T01 MTR_7g068160 51.429 245 65 6 8 212 15 245 3.12e-62 207
MsG0780039203.01.T01 MTR_7g068150 47.418 213 83 7 8 212 4 195 5.74e-44 158
MsG0780039203.01.T01 MTR_7g067880 40.476 252 94 7 1 211 1 237 2.41e-43 157
MsG0780039203.01.T01 MTR_7g067750 39.313 262 95 10 5 220 39 282 2.78e-43 157
MsG0780039203.01.T01 MTR_3g052690 60.185 108 43 0 229 336 42 149 3.49e-40 139
MsG0780039203.01.T01 MTR_6g016340 60.577 104 41 0 233 336 76 179 8.93e-39 136
MsG0780039203.01.T01 MTR_7g068040 49.306 144 59 3 27 157 13 155 2.14e-36 129
MsG0780039203.01.T01 MTR_7g067990 47.093 172 81 4 10 174 5 173 4.10e-33 129
MsG0780039203.01.T01 MTR_7g067990 48.936 94 37 1 119 212 239 321 2.85e-15 77.0
MsG0780039203.01.T01 MTR_7g067600 36.015 261 96 8 9 212 7 253 1.46e-30 121
MsG0780039203.01.T01 MTR_7g067300 35.659 258 93 8 10 225 4 230 1.44e-28 115
MsG0780039203.01.T01 MTR_7g067660 37.647 170 59 5 23 147 8 175 3.00e-26 107
MsG0780039203.01.T01 MTR_0067s0010 32.627 236 100 8 29 228 41 253 6.34e-24 102
MsG0780039203.01.T01 MTR_2g104350 42.056 107 62 0 230 336 136 242 1.35e-23 97.8
MsG0780039203.01.T01 MTR_3g466740 33.200 250 107 10 1 213 1 227 5.15e-22 97.1
MsG0780039203.01.T01 MTR_5g014380 36.000 125 79 1 212 336 98 221 5.07e-21 90.5
MsG0780039203.01.T01 MTR_7g102890 31.609 174 105 3 164 336 101 261 7.75e-21 90.9
MsG0780039203.01.T01 MTR_2g040320 38.095 105 65 0 232 336 4 108 5.09e-20 84.3
MsG0780039203.01.T01 MTR_1g046260 37.383 107 67 0 229 335 89 195 2.95e-19 84.7
MsG0780039203.01.T01 MTR_3g031290 36.449 107 68 0 229 335 175 281 1.12e-18 85.1
MsG0780039203.01.T01 MTR_8g078210 35.294 102 66 0 235 336 6 107 3.08e-18 79.3
MsG0780039203.01.T01 MTR_8g037820 34.127 126 78 1 213 333 50 175 6.65e-17 77.8
MsG0780039203.01.T01 MTR_1g018300 68.519 54 17 0 255 308 203 256 7.16e-17 79.7
MsG0780039203.01.T01 MTR_5g054985 35.455 110 71 0 226 335 19 128 1.74e-16 75.5
MsG0780039203.01.T01 MTR_4g097730 33.562 146 84 3 191 335 78 211 2.27e-16 77.4
MsG0780039203.01.T01 MTR_2g089160 41.573 89 52 0 247 335 131 219 2.87e-16 77.0
MsG0780039203.01.T01 MTR_5g025040 33.043 115 77 0 221 335 43 157 3.89e-16 75.1
MsG0780039203.01.T01 MTR_5g054960 33.884 121 69 1 200 320 4 113 4.00e-16 74.7
MsG0780039203.01.T01 MTR_4g079520 34.694 98 64 0 238 335 1 98 2.78e-15 71.2
MsG0780039203.01.T01 MTR_7g052100 35.455 110 71 0 226 335 121 230 5.53e-15 73.6
MsG0780039203.01.T01 MTR_2g087750 40.909 88 51 1 249 336 36 122 6.22e-15 70.9
MsG0780039203.01.T01 MTR_5g080210 32.710 107 72 0 230 336 79 185 8.57e-15 72.0
MsG0780039203.01.T01 MTR_4g061240 33.028 109 73 0 228 336 98 206 1.43e-14 72.0
MsG0780039203.01.T01 MTR_2g095160 33.036 112 75 0 225 336 66 177 1.83e-14 71.2
MsG0780039203.01.T01 MTR_8g074940 37.864 103 64 0 234 336 81 183 3.40e-14 70.5
MsG0780039203.01.T01 MTR_1g055370 34.066 91 60 0 245 335 48 138 4.79e-14 68.9
MsG0780039203.01.T01 MTR_4g105790 49.057 53 27 0 228 280 38 90 1.85e-13 65.9
MsG0780039203.01.T01 MTR_2g031500 44.737 76 42 0 250 325 47 122 1.93e-13 66.6
MsG0780039203.01.T01 MTR_5g068470 80.000 35 7 0 229 263 30 64 2.20e-13 65.5
MsG0780039203.01.T01 MTR_7g013900 41.026 78 46 0 259 336 35 112 4.35e-13 65.5
MsG0780039203.01.T01 MTR_7g033295 33.333 114 71 1 216 324 62 175 1.23e-12 65.9
MsG0780039203.01.T01 MTR_5g041190 26.708 161 90 3 176 336 82 214 1.44e-12 66.6
MsG0780039203.01.T01 MTR_5g036930 32.222 90 61 0 245 334 22 111 2.65e-12 65.1
MsG0780039203.01.T01 MTR_5g056220 42.857 77 42 1 264 338 5 81 3.92e-12 62.4
MsG0780039203.01.T01 MTR_6g044010 34.000 100 65 1 229 327 99 198 4.56e-12 65.5
MsG0780039203.01.T01 MTR_5g012450 35.955 89 57 0 248 336 98 186 7.69e-12 63.9
MsG0780039203.01.T01 MTR_2g062550 33.721 86 57 0 250 335 90 175 4.64e-11 62.8
MsG0780039203.01.T01 MTR_7g103360 38.667 75 46 0 230 304 341 415 8.24e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 59 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAGATCTCTCAACCATTT+TGG 0.178888 7:-59716015 MsG0780039203.01.T01:CDS
GGTCGATCAGACCAAGATTT+AGG 0.221007 7:-59716678 MsG0780039203.01.T01:intron
TTGGATCATTATCTTCAATT+TGG 0.224370 7:-59715996 MsG0780039203.01.T01:CDS
AATCTTGCCCTTGTTGTCTT+AGG 0.226046 7:-59716200 MsG0780039203.01.T01:CDS
CTTCAATTTGGTTCTTCATC+AGG 0.280604 7:-59715984 MsG0780039203.01.T01:CDS
CAACTTATGAAGAACCAAAA+AGG 0.306164 7:+59716322 None:intergenic
AAAGTACTCCTTATCAGCTT+TGG 0.309613 7:-59715863 MsG0780039203.01.T01:CDS
GTCGATCAGACCAAGATTTA+GGG 0.336400 7:-59716677 MsG0780039203.01.T01:intron
ACACATATGGAAAAGGTGTT+TGG 0.343736 7:+59716297 None:intergenic
AAGTACTCCTTATCAGCTTT+GGG 0.344191 7:-59715862 MsG0780039203.01.T01:CDS
TCTCTCCTTCCCCTAAATCT+TGG 0.349350 7:+59716667 None:intergenic
TTGAAGATAATGATCCAAAA+TGG 0.360959 7:+59716001 None:intergenic
AGCAATGCAGTGATGCCGTT+TGG 0.374285 7:-59716570 MsG0780039203.01.T01:CDS
TTTGGCAACTTGTTCGTCAT+TGG 0.374344 7:-59716052 MsG0780039203.01.T01:CDS
TCTTTCTGATCTAATGTTGT+TGG 0.378882 7:-59716357 MsG0780039203.01.T01:CDS
TTTATTATGAATTTCATGAT+TGG 0.400536 7:-59715788 MsG0780039203.01.T01:CDS
CACATATGGAAAAGGTGTTT+GGG 0.404752 7:+59716298 None:intergenic
TTCAATTTGGTTCTTCATCA+GGG 0.411409 7:-59715983 MsG0780039203.01.T01:CDS
CTTGCGATCGACACCTTCCT+TGG 0.420603 7:+59717254 None:intergenic
GCAATGCAGTGATGCCGTTT+GGG 0.430219 7:-59716569 MsG0780039203.01.T01:CDS
CAACTTGTTCGTCATTGGTT+GGG 0.440676 7:-59716047 MsG0780039203.01.T01:CDS
GCAACTTGTTCGTCATTGGT+TGG 0.442531 7:-59716048 MsG0780039203.01.T01:CDS
TCATCTGGTTCAAACACATA+TGG 0.448893 7:+59716284 None:intergenic
ACACAAAGTAACTGAAGATC+AGG 0.469822 7:+59716170 None:intergenic
CTCTTTATCTAATTCCCAAA+CGG 0.472699 7:+59716555 None:intergenic
TGACCTCTTCCATAAGCAAA+AGG 0.472777 7:+59716641 None:intergenic
GGAGAGGGAAGAGAGTCATC+TGG 0.480224 7:+59716269 None:intergenic
CTCTGTTCCTCTCGAGGAGA+GGG 0.485180 7:+59716254 None:intergenic
AACATTTCAGTGGTTCCAAA+AGG 0.487214 7:-59717308 MsG0780039203.01.T01:CDS
AAGCTCTTGGCTAATTTGGA+AGG 0.488375 7:-59715916 MsG0780039203.01.T01:CDS
GGTTCAAACACATATGGAAA+AGG 0.497243 7:+59716290 None:intergenic
TTCGTTGTTAGATTGGCCAT+TGG 0.501215 7:+59717404 None:intergenic
CGTTTGGGAATTAGATAAAG+AGG 0.516845 7:-59716554 MsG0780039203.01.T01:CDS
AACAGAGGAAGACGGAAGAG+AGG 0.521603 7:-59716238 MsG0780039203.01.T01:CDS
GTCTTCCTCTGTTCCTCTCG+AGG 0.532881 7:+59716248 None:intergenic
ACAGAGGAAGACGGAAGAGA+GGG 0.556949 7:-59716237 MsG0780039203.01.T01:CDS
CCTCTGTTCCTCTCGAGGAG+AGG 0.563043 7:+59716253 None:intergenic
CTCTCTTCCCTCTCCTCGAG+AGG 0.571412 7:-59716261 MsG0780039203.01.T01:CDS
ACGAGGATGCTTACATTCCA+AGG 0.576926 7:-59717271 MsG0780039203.01.T01:CDS
TCAGACCAAGATTTAGGGGA+AGG 0.580195 7:-59716672 MsG0780039203.01.T01:intron
CAAGGAAGGTGTCGATCGCA+AGG 0.586226 7:-59717253 MsG0780039203.01.T01:intron
TCTCGAGGTTAACGAAGAAG+TGG 0.603314 7:+59716120 None:intergenic
TCGAGAGGAACAGAGGAAGA+CGG 0.610530 7:-59716246 MsG0780039203.01.T01:CDS
GGACAAGATCAAGAATGTGA+GGG 0.611476 7:+59716141 None:intergenic
TCAATCAAGCAACATTTCAG+TGG 0.614527 7:-59717318 MsG0780039203.01.T01:CDS
GAGAGTATCCTAAGACAACA+AGG 0.617149 7:+59716192 None:intergenic
TGGACAAGATCAAGAATGTG+AGG 0.618675 7:+59716140 None:intergenic
GGATGCTTACATTCCAAGGA+AGG 0.619571 7:-59717267 MsG0780039203.01.T01:CDS
GGGTACTTTCACATGTCTCG+AGG 0.619737 7:+59716105 None:intergenic
GAGGTTCGTGAATGCTACCT+CGG 0.625091 7:-59716535 MsG0780039203.01.T01:CDS
CCTCTCCTCGAGAGGAACAG+AGG 0.641798 7:-59716253 MsG0780039203.01.T01:CDS
ATCTAACAACGAAAAGTGAG+TGG 0.647566 7:-59717394 MsG0780039203.01.T01:CDS
ATGTGAAAGTACCCATAGAA+CGG 0.647683 7:-59716096 MsG0780039203.01.T01:CDS
GACAAGATCAAGAATGTGAG+GGG 0.654825 7:+59716142 None:intergenic
TCGATCAGACCAAGATTTAG+GGG 0.679221 7:-59716676 MsG0780039203.01.T01:intron
TGAAAGTACCCATAGAACGG+AGG 0.705780 7:-59716093 MsG0780039203.01.T01:CDS
GTTCGAGTTTAAGATCTCCG+AGG 0.711717 7:+59716518 None:intergenic
AGAGTATCCTAAGACAACAA+GGG 0.714876 7:+59716193 None:intergenic
AAATGCATAAAAGAACATCG+TGG 0.720563 7:+59715951 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAACATTATTTTTGTTTT+TGG + Chr7:59716074-59716093 None:intergenic 10.0%
!!! TTTGTTCATTTTTTTTATAA+GGG + Chr7:59716268-59716287 None:intergenic 10.0%
!!! TTTTGTTCATTTTTTTTATA+AGG + Chr7:59716269-59716288 None:intergenic 10.0%
!! TTTATTATGAATTTCATGAT+TGG - Chr7:59717350-59717369 MsG0780039203.01.T01:CDS 15.0%
!! AAAATACATATGCATAAATG+TGG - Chr7:59716145-59716164 MsG0780039203.01.T01:CDS 20.0%
!! AAATACATATGCATAAATGT+GGG - Chr7:59716146-59716165 MsG0780039203.01.T01:CDS 20.0%
!!! ATTTATGCATATGTATTTTG+TGG + Chr7:59716144-59716163 None:intergenic 20.0%
!!! GTTCTTTTATGCATTTAATT+TGG - Chr7:59717194-59717213 MsG0780039203.01.T01:intron 20.0%
! AACTTATGAAGAACCAAAAA+GGG + Chr7:59716818-59716837 None:intergenic 25.0%
! AATACATATGCATAAATGTG+GGG - Chr7:59716147-59716166 MsG0780039203.01.T01:CDS 25.0%
! ATGTTCTATAAATACCCAAA+AGG + Chr7:59716198-59716217 None:intergenic 25.0%
! TTCCAAAAGGACTTAAAAAA+TGG - Chr7:59715843-59715862 MsG0780039203.01.T01:CDS 25.0%
! TTGAAGATAATGATCCAAAA+TGG + Chr7:59717140-59717159 None:intergenic 25.0%
! TTGGATCATTATCTTCAATT+TGG - Chr7:59717142-59717161 MsG0780039203.01.T01:intron 25.0%
!! ATATCAAGCTTCTTTCTTTT+AGG - Chr7:59717302-59717321 MsG0780039203.01.T01:CDS 25.0%
!!! AATGAAATTTTTTGGCCTTT+TGG - Chr7:59716180-59716199 MsG0780039203.01.T01:CDS 25.0%
!!! AGTGAAGGAATGAAATTTTT+TGG - Chr7:59716172-59716191 MsG0780039203.01.T01:CDS 25.0%
!!! ATGAAATTTTTTGGCCTTTT+GGG - Chr7:59716181-59716200 MsG0780039203.01.T01:CDS 25.0%
!!! TAATTTGGTTTTTAAGCTCT+TGG - Chr7:59717209-59717228 MsG0780039203.01.T01:intron 25.0%
!!! TTCCATTTTTTAAGTCCTTT+TGG + Chr7:59715848-59715867 None:intergenic 25.0%
AAAATCGCAATCAAAATCGA+AGG - Chr7:59715965-59715984 MsG0780039203.01.T01:CDS 30.0%
AAATGCATAAAAGAACATCG+TGG + Chr7:59717190-59717209 None:intergenic 30.0%
AACATGTCATGGATTCAAAT+CGG - Chr7:59716213-59716232 MsG0780039203.01.T01:CDS 30.0%
ACTCGCTAAAATTATGTTAG+TGG - Chr7:59716650-59716669 MsG0780039203.01.T01:CDS 30.0%
ACTTATGAAGAACCAAAAAG+GGG + Chr7:59716817-59716836 None:intergenic 30.0%
ATACATATGCATAAATGTGG+GGG - Chr7:59716148-59716167 MsG0780039203.01.T01:CDS 30.0%
CAACTTATGAAGAACCAAAA+AGG + Chr7:59716819-59716838 None:intergenic 30.0%
CTCTTTATCTAATTCCCAAA+CGG + Chr7:59716586-59716605 None:intergenic 30.0%
GCTAAAATTATGTTAGTGGA+TGG - Chr7:59716654-59716673 MsG0780039203.01.T01:CDS 30.0%
GGTATTTATAGAACATGTCA+TGG - Chr7:59716202-59716221 MsG0780039203.01.T01:CDS 30.0%
TAAAATCGCAATCAAAATCG+AGG - Chr7:59715964-59715983 MsG0780039203.01.T01:CDS 30.0%
TCTTTCTGATCTAATGTTGT+TGG - Chr7:59716781-59716800 MsG0780039203.01.T01:intron 30.0%
! AAATCGAAGGATTTTACTCA+AGG - Chr7:59715978-59715997 MsG0780039203.01.T01:CDS 30.0%
! AGTCGAGTTATTGATAACAA+TGG - Chr7:59716439-59716458 MsG0780039203.01.T01:intron 30.0%
! ATAAGGGTCAATTTTTGATC+CGG + Chr7:59716252-59716271 None:intergenic 30.0%
! ATATTTTCCCAAAGCTGATA+AGG + Chr7:59717286-59717305 None:intergenic 30.0%
! GACTTTTGTAGAATTGATGT+AGG - Chr7:59716000-59716019 MsG0780039203.01.T01:CDS 30.0%
! TTTTAAGCTCTTGGCTAATT+TGG - Chr7:59717218-59717237 MsG0780039203.01.T01:intron 30.0%
!! ATAGGATTTTGCCTGTTTTT+GGG - Chr7:59716351-59716370 MsG0780039203.01.T01:CDS 30.0%
!! TTCAATTTGGTTCTTCATCA+GGG - Chr7:59717155-59717174 MsG0780039203.01.T01:intron 30.0%
AAAAATACGTTCGTCAGGTT+TGG - Chr7:59717068-59717087 MsG0780039203.01.T01:intron 35.0%
AACATTTCAGTGGTTCCAAA+AGG - Chr7:59715830-59715849 MsG0780039203.01.T01:CDS 35.0%
AAGTACTCCTTATCAGCTTT+GGG - Chr7:59717276-59717295 MsG0780039203.01.T01:CDS 35.0%
ACACAAAGTAACTGAAGATC+AGG + Chr7:59716971-59716990 None:intergenic 35.0%
ACATGTCATGGATTCAAATC+GGG - Chr7:59716214-59716233 MsG0780039203.01.T01:CDS 35.0%
AGGACTTAAAAAATGGAACG+AGG - Chr7:59715850-59715869 MsG0780039203.01.T01:CDS 35.0%
ATCGCAAGGTTATCAAAATC+GGG - Chr7:59715899-59715918 MsG0780039203.01.T01:CDS 35.0%
ATCTAACAACGAAAAGTGAG+TGG - Chr7:59715744-59715763 MsG0780039203.01.T01:CDS 35.0%
CGTTTGGGAATTAGATAAAG+AGG - Chr7:59716584-59716603 MsG0780039203.01.T01:CDS 35.0%
GACTTTACTTCAAGTCGAAA+GGG - Chr7:59715921-59715940 MsG0780039203.01.T01:CDS 35.0%
GATCGCAAGGTTATCAAAAT+CGG - Chr7:59715898-59715917 MsG0780039203.01.T01:CDS 35.0%
GGTTCAAACACATATGGAAA+AGG + Chr7:59716851-59716870 None:intergenic 35.0%
TAACCCCCAAGCATAAAAAT+GGG + Chr7:59717384-59717403 None:intergenic 35.0%
TCAATCAAGCAACATTTCAG+TGG - Chr7:59715820-59715839 MsG0780039203.01.T01:CDS 35.0%
TGAAATCCATTCAAAATCGC+AGG + Chr7:59716303-59716322 None:intergenic 35.0%
TTAACCCCCAAGCATAAAAA+TGG + Chr7:59717385-59717404 None:intergenic 35.0%
TTGATGTAGGATAGCAAAGT+CGG - Chr7:59716013-59716032 MsG0780039203.01.T01:CDS 35.0%
TTGGAGCTTCTCATATCAAA+GGG - Chr7:59716687-59716706 MsG0780039203.01.T01:intron 35.0%
! AAAGTACTCCTTATCAGCTT+TGG - Chr7:59717275-59717294 MsG0780039203.01.T01:CDS 35.0%
! AGAGTATCCTAAGACAACAA+GGG + Chr7:59716948-59716967 None:intergenic 35.0%
! CAAAATCCTGCGATTTTGAA+TGG - Chr7:59716294-59716313 MsG0780039203.01.T01:CDS 35.0%
! GATAGGATTTTGCCTGTTTT+TGG - Chr7:59716350-59716369 MsG0780039203.01.T01:CDS 35.0%
! GTATTTTTCCTCCGTTCTAT+GGG + Chr7:59717056-59717075 None:intergenic 35.0%
! TCAAAATCGCAGGATTTTGA+AGG + Chr7:59716293-59716312 None:intergenic 35.0%
! TCATCTGGTTCAAACACATA+TGG + Chr7:59716857-59716876 None:intergenic 35.0%
! TTTTATGCTTGGGGGTTAAT+CGG - Chr7:59717386-59717405 MsG0780039203.01.T01:CDS 35.0%
!! ACACATATGGAAAAGGTGTT+TGG + Chr7:59716844-59716863 None:intergenic 35.0%
!! AGAACCCATTTTTATGCTTG+GGG - Chr7:59717377-59717396 MsG0780039203.01.T01:CDS 35.0%
!! ATGTGAAAGTACCCATAGAA+CGG - Chr7:59717042-59717061 MsG0780039203.01.T01:intron 35.0%
!! CACATATGGAAAAGGTGTTT+GGG + Chr7:59716843-59716862 None:intergenic 35.0%
!! CAGAACCCATTTTTATGCTT+GGG - Chr7:59717376-59717395 MsG0780039203.01.T01:CDS 35.0%
!! CGATTTTGTGCGATTTTGAT+AGG - Chr7:59716333-59716352 MsG0780039203.01.T01:CDS 35.0%
!! CTCACTTTTCGTTGTTAGAT+TGG + Chr7:59715744-59715763 None:intergenic 35.0%
!! CTTCAATTTGGTTCTTCATC+AGG - Chr7:59717154-59717173 MsG0780039203.01.T01:intron 35.0%
!!! GCTCTAAGATTTTATCTGCT+CGG + Chr7:59716551-59716570 None:intergenic 35.0%
AAGCTCTTGGCTAATTTGGA+AGG - Chr7:59717222-59717241 MsG0780039203.01.T01:intron 40.0%
AATCGGGTCAATTTACGAAC+CGG - Chr7:59716230-59716249 MsG0780039203.01.T01:CDS 40.0%
CATAGCAAAGTCCCAAAAAC+AGG + Chr7:59716365-59716384 None:intergenic 40.0%
CGACTTAAGTCTCAAAATCC+TGG + Chr7:59716424-59716443 None:intergenic 40.0%
GACAAGATCAAGAATGTGAG+GGG + Chr7:59716999-59717018 None:intergenic 40.0%
GGACAAGATCAAGAATGTGA+GGG + Chr7:59717000-59717019 None:intergenic 40.0%
GGACTTTACTTCAAGTCGAA+AGG - Chr7:59715920-59715939 MsG0780039203.01.T01:CDS 40.0%
GTCGATCAGACCAAGATTTA+GGG - Chr7:59716461-59716480 MsG0780039203.01.T01:intron 40.0%
GTTGGAGCTTCTCATATCAA+AGG - Chr7:59716686-59716705 MsG0780039203.01.T01:intron 40.0%
TACACAAAGTCGCAAAAACC+AGG - Chr7:59716403-59716422 MsG0780039203.01.T01:intron 40.0%
TCGAAAGGGAGTAGCAAAAT+CGG - Chr7:59715935-59715954 MsG0780039203.01.T01:CDS 40.0%
TCGATCAGACCAAGATTTAG+GGG - Chr7:59716462-59716481 MsG0780039203.01.T01:intron 40.0%
TGACCTCTTCCATAAGCAAA+AGG + Chr7:59716500-59716519 None:intergenic 40.0%
TGATGTAGGATAGCAAAGTC+GGG - Chr7:59716014-59716033 MsG0780039203.01.T01:CDS 40.0%
TGGACAAGATCAAGAATGTG+AGG + Chr7:59717001-59717020 None:intergenic 40.0%
! AATCTTGCCCTTGTTGTCTT+AGG - Chr7:59716938-59716957 MsG0780039203.01.T01:intron 40.0%
! AGACCTTTTGCTTATGGAAG+AGG - Chr7:59716494-59716513 MsG0780039203.01.T01:intron 40.0%
! AGCAGATCTCTCAACCATTT+TGG - Chr7:59717123-59717142 MsG0780039203.01.T01:intron 40.0%
! AGTGGATGGATGTTTTCTGT+TGG - Chr7:59716668-59716687 MsG0780039203.01.T01:CDS 40.0%
! CAACTTGTTCGTCATTGGTT+GGG - Chr7:59717091-59717110 MsG0780039203.01.T01:intron 40.0%
! CCAAGCATAAAAATGGGTTC+TGG + Chr7:59717378-59717397 None:intergenic 40.0%
! CGTATTTTTCCTCCGTTCTA+TGG + Chr7:59717057-59717076 None:intergenic 40.0%
! GAGAGAAGACCTTTTGCTTA+TGG - Chr7:59716488-59716507 MsG0780039203.01.T01:intron 40.0%
! TTTGGCAACTTGTTCGTCAT+TGG - Chr7:59717086-59717105 MsG0780039203.01.T01:intron 40.0%
!! CCAGAACCCATTTTTATGCT+TGG - Chr7:59717375-59717394 MsG0780039203.01.T01:CDS 40.0%
!! GAACCCATTTTTATGCTTGG+GGG - Chr7:59717378-59717397 MsG0780039203.01.T01:CDS 40.0%
!! GAGAGTATCCTAAGACAACA+AGG + Chr7:59716949-59716968 None:intergenic 40.0%
!!! CTGTTTTTGGGACTTTGCTA+TGG - Chr7:59716363-59716382 MsG0780039203.01.T01:CDS 40.0%
ACGAGGATGCTTACATTCCA+AGG - Chr7:59715867-59715886 MsG0780039203.01.T01:CDS 45.0%
CATAAATGTGGGGGAAGTGA+AGG - Chr7:59716157-59716176 MsG0780039203.01.T01:CDS 45.0%
CGAAAGGGAGTAGCAAAATC+GGG - Chr7:59715936-59715955 MsG0780039203.01.T01:CDS 45.0%
GAAGAACCAAAAAGGGGATC+TGG + Chr7:59716811-59716830 None:intergenic 45.0%
GGAGGAAAAATACGTTCGTC+AGG - Chr7:59717063-59717082 MsG0780039203.01.T01:intron 45.0%
GGATGCTTACATTCCAAGGA+AGG - Chr7:59715871-59715890 MsG0780039203.01.T01:CDS 45.0%
GGTCGATCAGACCAAGATTT+AGG - Chr7:59716460-59716479 MsG0780039203.01.T01:intron 45.0%
GTCTTTCAGCACTTCAACTG+CGG + Chr7:59716754-59716773 None:intergenic 45.0%
TCAGACCAAGATTTAGGGGA+AGG - Chr7:59716466-59716485 MsG0780039203.01.T01:intron 45.0%
TCTCGAGGTTAACGAAGAAG+TGG + Chr7:59717021-59717040 None:intergenic 45.0%
TCTCTCCTTCCCCTAAATCT+TGG + Chr7:59716474-59716493 None:intergenic 45.0%
TCTTTCAGCACTTCAACTGC+GGG + Chr7:59716753-59716772 None:intergenic 45.0%
! GCAACTTGTTCGTCATTGGT+TGG - Chr7:59717090-59717109 MsG0780039203.01.T01:intron 45.0%
! GTTCGAGTTTAAGATCTCCG+AGG + Chr7:59716623-59716642 None:intergenic 45.0%
!! TGAAAGTACCCATAGAACGG+AGG - Chr7:59717045-59717064 MsG0780039203.01.T01:intron 45.0%
AACAGAGGAAGACGGAAGAG+AGG - Chr7:59716900-59716919 MsG0780039203.01.T01:intron 50.0%
ACAGAGGAAGACGGAAGAGA+GGG - Chr7:59716901-59716920 MsG0780039203.01.T01:intron 50.0%
AGCAATGCAGTGATGCCGTT+TGG - Chr7:59716568-59716587 MsG0780039203.01.T01:CDS 50.0%
CGGGACTAGGCGGAAATAAA+CGG + Chr7:59716734-59716753 None:intergenic 50.0%
GAGGTTCGTGAATGCTACCT+CGG - Chr7:59716603-59716622 MsG0780039203.01.T01:CDS 50.0%
GGGTACTTTCACATGTCTCG+AGG + Chr7:59717036-59717055 None:intergenic 50.0%
TCGAGAGGAACAGAGGAAGA+CGG - Chr7:59716892-59716911 MsG0780039203.01.T01:intron 50.0%
! GCAATGCAGTGATGCCGTTT+GGG - Chr7:59716569-59716588 MsG0780039203.01.T01:CDS 50.0%
! GGAGAACCAGATCCCCTTTT+TGG - Chr7:59716802-59716821 MsG0780039203.01.T01:intron 50.0%
ACTTCAACTGCGGGACTAGG+CGG + Chr7:59716744-59716763 None:intergenic 55.0%
AGCACTTCAACTGCGGGACT+AGG + Chr7:59716747-59716766 None:intergenic 55.0%
CTCTGTTCCTCTCGAGGAGA+GGG + Chr7:59716887-59716906 None:intergenic 55.0%
CTTGCGATCGACACCTTCCT+TGG + Chr7:59715887-59715906 None:intergenic 55.0%
GGAGAGGGAAGAGAGTCATC+TGG + Chr7:59716872-59716891 None:intergenic 55.0%
GTCTTCCTCTGTTCCTCTCG+AGG + Chr7:59716893-59716912 None:intergenic 55.0%
!! CAAGGAAGGTGTCGATCGCA+AGG - Chr7:59715885-59715904 MsG0780039203.01.T01:CDS 55.0%
CCTCTCCTCGAGAGGAACAG+AGG - Chr7:59716885-59716904 MsG0780039203.01.T01:intron 60.0%
CCTCTGTTCCTCTCGAGGAG+AGG + Chr7:59716888-59716907 None:intergenic 60.0%
CTCTCTTCCCTCTCCTCGAG+AGG - Chr7:59716877-59716896 MsG0780039203.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 59715737 59717423 59715737 ID=MsG0780039203.01;Name=MsG0780039203.01
Chr7 mRNA 59715737 59717423 59715737 ID=MsG0780039203.01.T01;Parent=MsG0780039203.01;Name=MsG0780039203.01.T01;_AED=0.54;_eAED=0.55;_QI=0|0|0|1|0|0|3|0|341
Chr7 exon 59717254 59717423 59717254 ID=MsG0780039203.01.T01:exon:7146;Parent=MsG0780039203.01.T01
Chr7 exon 59716496 59716690 59716496 ID=MsG0780039203.01.T01:exon:7145;Parent=MsG0780039203.01.T01
Chr7 exon 59715737 59716397 59715737 ID=MsG0780039203.01.T01:exon:7144;Parent=MsG0780039203.01.T01
Chr7 CDS 59717254 59717423 59717254 ID=MsG0780039203.01.T01:cds;Parent=MsG0780039203.01.T01
Chr7 CDS 59716496 59716690 59716496 ID=MsG0780039203.01.T01:cds;Parent=MsG0780039203.01.T01
Chr7 CDS 59715737 59716397 59715737 ID=MsG0780039203.01.T01:cds;Parent=MsG0780039203.01.T01
Gene Sequence

>MsG0780039203.01.T01

ATGGCCAATCTAACAACGAAAAGTGAGTGGTTACAATCTATAGAAACATCGCTAACATCTGTAGATGTAGACTATGATTATGTTCAATCAAGCAACATTTCAGTGGTTCCAAAAGGACTTAAAAAATGGAACGAGGATGCTTACATTCCAAGGAAGGTGTCGATCGCAAGACCAAGATTTAGGGGAAGGAGAGAAGACCTTTTGCTTATGGAAGAGGTCAAACTACGCTGTATGTTGTCTCTTCTTAACCGAGCAGATAAAATCTTAGAGCAATGCAGTGATGCCGTTTGGGAATTAGATAAAGAGGTTCGTGAATGCTACCTCGGAGATCTTAAACTCGAACGACATGAACTCGCTAAAATTATTGCTGAAAGACGTGATGTTCTTTCTGATCTAATGTTGTTGGAGAACCAGATCCCCTTTTTGGTTCTTCATAAGTTGTCCCAAACACCTTTTCCATATGTGTTTGAACCAGATGACTCTCTTCCCTCTCCTCGAGAGGAACAGAGGAAGACGGAAGAGAGGGTCAAGAAAATTAACAATCTTGCCCTTGTTGTCTTAGGATACTCTCCTGATCTTCAGTTACTTTGTGTTGATGCCCCTCACATTCTTGATCTTGTCCACTTCTTCGTTAACCTCGAGACATGTGAAAGTACCCATAGAACGGAGGAAAAATACGTTCGTCAGGTTTGGCAACTTGTTCGTCATTGGTTGGGTGTTCATTCAGCAGATCTCTCAACCATTTTGGATCATTATCTTCAATTTGGTTCTTCATCAGGGCTTGCTAAACCACGATGTTCTTTTATGCATTTAATTTGGTTTTTAAGCTCTTGGCTAATTTGGAAGGAAATGAATGCTAGAATTTTCTGTGCAAAAGAAAGTACTCCTTATCAGCTTTGGGAAAATATCAAGCTTCTTTCTTTTAGGTTGTTTAAAGCTCATTCTATTGCTTTTTATTATGAATTTCATGATTGGTGCCAGAACCCATTTTTATGCTTGGGGGTTAATCGGTATTTTGTCCGTTGA
Protein sequence

>MsG0780039203.01.T01

MANLTTKSEWLQSIETSLTSVDVDYDYVQSSNISVVPKGLKKWNEDAYIPRKVSIARPRFRGRREDLLLMEEVKLRCMLSLLNRADKILEQCSDAVWELDKEVRECYLGDLKLERHELAKIIAERRDVLSDLMLLENQIPFLVLHKLSQTPFPYVFEPDDSLPSPREEQRKTEERVKKINNLALVVLGYSPDLQLLCVDAPHILDLVHFFVNLETCESTHRTEEKYVRQVWQLVRHWLGVHSADLSTILDHYLQFGSSSGLAKPRCSFMHLIWFLSSWLIWKEMNARIFCAKESTPYQLWENIKLLSFRLFKAHSIAFYYEFHDWCQNPFLCLGVNRYFVR*