Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015852.01.T01 | XP_013461062.1 | 91.64 | 622 | 40 | 3 | 1 | 614 | 1 | 618 | 0 | 1174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015852.01.T01 | Q9SU72 | 39.28 | 639 | 312 | 15 | 13 | 609 | 9 | 613 | 1.98E-140 | 425 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015852.01.T01 | A0A072V056 | 91.640 | 622 | 40 | 3 | 1 | 614 | 1 | 618 | 0.0 | 1174 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047897.01 | MsG0380015852.01 | 0.831743 | 1.403980e-55 | 1.537586e-52 |
| MsG0080048177.01 | MsG0380015852.01 | 0.803151 | 3.998005e-49 | 1.994323e-46 |
| MsG0080048178.01 | MsG0380015852.01 | 0.821070 | 4.909191e-53 | 3.953623e-50 |
| MsG0180000585.01 | MsG0380015852.01 | 0.811473 | 6.878919e-51 | 4.262154e-48 |
| MsG0180001125.01 | MsG0380015852.01 | 0.806588 | 7.648746e-50 | 4.167356e-47 |
| MsG0180001271.01 | MsG0380015852.01 | 0.827494 | 1.516539e-54 | 1.466477e-51 |
| MsG0180002894.01 | MsG0380015852.01 | 0.804672 | 1.930463e-49 | 1.001376e-46 |
| MsG0180005172.01 | MsG0380015852.01 | 0.835060 | 2.090032e-56 | 2.526798e-53 |
| MsG0180005983.01 | MsG0380015852.01 | 0.810945 | 8.953181e-51 | 5.471024e-48 |
| MsG0280006432.01 | MsG0380015852.01 | 0.832174 | 1.099064e-55 | 1.218800e-52 |
| MsG0280006433.01 | MsG0380015852.01 | 0.855714 | 5.240969e-62 | 1.221206e-58 |
| MsG0280010614.01 | MsG0380015852.01 | 0.801924 | 7.157079e-49 | 3.460238e-46 |
| MsG0380012021.01 | MsG0380015852.01 | 0.858744 | 6.676263e-63 | 1.721548e-59 |
| MsG0380012030.01 | MsG0380015852.01 | 0.825963 | 3.519849e-54 | 3.256714e-51 |
| MsG0380012033.01 | MsG0380015852.01 | 0.857391 | 1.685183e-62 | 4.152607e-59 |
| MsG0380013068.01 | MsG0380015852.01 | 0.817631 | 2.983913e-52 | 2.184490e-49 |
| MsG0380014163.01 | MsG0380015852.01 | 0.830635 | 2.628507e-55 | 2.785365e-52 |
| MsG0380015005.01 | MsG0380015852.01 | 0.810013 | 1.423133e-50 | 8.484004e-48 |
| MsG0380015468.01 | MsG0380015852.01 | 0.801716 | 7.896209e-49 | 3.797418e-46 |
| MsG0380015852.01 | MsG0380015877.01 | 0.838093 | 3.529216e-57 | 4.677271e-54 |
| MsG0380015852.01 | MsG0380015878.01 | 0.825364 | 4.880466e-54 | 4.438961e-51 |
| MsG0380015852.01 | MsG0380015931.01 | 0.841068 | 5.945621e-58 | 8.635048e-55 |
| MsG0380015852.01 | MsG0380016708.01 | 0.815750 | 7.876731e-52 | 5.477633e-49 |
| MsG0380015852.01 | MsG0380016909.01 | 0.822109 | 2.823713e-53 | 2.341299e-50 |
| MsG0380015852.01 | MsG0380017940.01 | 0.829939 | 3.887284e-55 | 4.037114e-52 |
| MsG0380015852.01 | MsG0480019034.01 | 0.845903 | 3.037556e-59 | 5.139088e-56 |
| MsG0380015852.01 | MsG0480020194.01 | 0.801678 | 8.039851e-49 | 3.862740e-46 |
| MsG0380015852.01 | MsG0480020225.01 | 0.804060 | 2.589596e-49 | 1.322350e-46 |
| MsG0380015852.01 | MsG0480022099.01 | 0.819919 | 9.018390e-53 | 7.033971e-50 |
| MsG0380015852.01 | MsG0480022120.01 | 0.818856 | 1.575520e-52 | 1.193098e-49 |
| MsG0380015852.01 | MsG0480022406.01 | 0.800998 | 1.107683e-48 | 5.231929e-46 |
| MsG0380015852.01 | MsG0480022520.01 | 0.815629 | 8.380834e-52 | 5.808984e-49 |
| MsG0380015852.01 | MsG0480022598.01 | 0.805079 | 1.587275e-49 | 8.320451e-47 |
| MsG0380015852.01 | MsG0480022661.01 | 0.817706 | 2.869082e-52 | 2.104821e-49 |
| MsG0380015852.01 | MsG0480023306.01 | 0.812375 | 4.376185e-51 | 2.777716e-48 |
| MsG0380015852.01 | MsG0480023898.01 | 0.811108 | 8.254295e-51 | 5.065264e-48 |
| MsG0380015852.01 | MsG0480023903.01 | 0.845662 | 3.531326e-59 | 5.927957e-56 |
| MsG0380015852.01 | MsG0580024157.01 | 0.820454 | 6.800086e-53 | 5.383191e-50 |
| MsG0380015852.01 | MsG0580024205.01 | 0.816937 | 4.274937e-52 | 3.070965e-49 |
| MsG0380015852.01 | MsG0580024682.01 | 0.827539 | 1.479730e-54 | 1.432665e-51 |
| MsG0380015852.01 | MsG0580024826.01 | 0.821026 | 5.024365e-53 | 4.041461e-50 |
| MsG0380015852.01 | MsG0580024853.01 | 0.825458 | 4.636244e-54 | 4.227988e-51 |
| MsG0380015852.01 | MsG0580024856.01 | 0.842743 | 2.146101e-58 | 3.284700e-55 |
| MsG0380015852.01 | MsG0580025863.01 | 0.819071 | 1.407544e-52 | 1.072176e-49 |
| MsG0380015852.01 | MsG0580027613.01 | 0.822810 | 1.941142e-53 | 1.642033e-50 |
| MsG0380015852.01 | MsG0580027847.01 | 0.810677 | 1.023614e-50 | 6.209780e-48 |
| MsG0380015852.01 | MsG0580029672.01 | 0.886064 | 4.730777e-72 | 3.327724e-68 |
| MsG0380015852.01 | MsG0680030629.01 | 0.839311 | 1.709340e-57 | 2.351379e-54 |
| MsG0380015852.01 | MsG0680030695.01 | 0.834212 | 3.415958e-56 | 4.026113e-53 |
| MsG0380015852.01 | MsG0680034092.01 | 0.840294 | 9.482167e-58 | 1.344608e-54 |
| MsG0380015852.01 | MsG0680034093.01 | 0.875924 | 2.099598e-68 | 9.986388e-65 |
| MsG0380015852.01 | MsG0680034753.01 | 0.811921 | 5.498037e-51 | 3.446930e-48 |
| MsG0380015852.01 | MsG0680035133.01 | 0.810788 | 9.681713e-51 | 5.890999e-48 |
| MsG0380015852.01 | MsG0680035460.01 | 0.823011 | 1.742668e-53 | 1.482582e-50 |
| MsG0380015852.01 | MsG0780038113.01 | 0.824597 | 7.406326e-54 | 6.591113e-51 |
| MsG0380015852.01 | MsG0780039203.01 | 0.810871 | 9.290742e-51 | 5.665729e-48 |
| MsG0380015852.01 | MsG0780039249.01 | 0.842737 | 2.154386e-58 | 3.296757e-55 |
| MsG0380015852.01 | MsG0780039654.01 | 0.815149 | 1.071620e-51 | 7.329711e-49 |
| MsG0380015852.01 | MsG0780039875.01 | 0.808947 | 2.411325e-50 | 1.397234e-47 |
| MsG0380015852.01 | MsG0780040601.01 | 0.807396 | 5.158623e-50 | 2.870240e-47 |
| MsG0380015852.01 | MsG0780040679.01 | 0.838886 | 2.202291e-57 | 2.990290e-54 |
| MsG0380015852.01 | MsG0780041753.01 | 0.812175 | 4.839568e-51 | 3.055322e-48 |
| MsG0380015852.01 | MsG0780041777.01 | 0.837961 | 3.816307e-57 | 5.037915e-54 |
| MsG0380015852.01 | MsG0780041787.01 | 0.808753 | 2.653012e-50 | 1.529424e-47 |
| MsG0380015852.01 | MsG0880042053.01 | 0.810561 | 1.084096e-50 | 6.556186e-48 |
| MsG0380015852.01 | MsG0880042609.01 | 0.839629 | 1.413750e-57 | 1.963741e-54 |
| MsG0380015852.01 | MsG0880042965.01 | 0.807405 | 5.137405e-50 | 2.859041e-47 |
| MsG0380015852.01 | MsG0880043133.01 | 0.804285 | 2.324204e-49 | 1.193670e-46 |
| MsG0380015852.01 | MsG0880044264.01 | 0.819167 | 1.338521e-52 | 1.022278e-49 |
| MsG0380015852.01 | MsG0880045518.01 | 0.805011 | 1.640130e-49 | 8.582327e-47 |
| MsG0380015852.01 | MsG0880045590.01 | 0.801540 | 8.582610e-49 | 4.109211e-46 |
| MsG0380015852.01 | MsG0880045782.01 | 0.826556 | 2.542074e-54 | 2.391976e-51 |
| MsG0380015852.01 | MsG0880045827.01 | 0.819522 | 1.111157e-52 | 8.570897e-50 |
| MsG0380015852.01 | MsG0880045888.01 | 0.822836 | 1.913878e-53 | 1.620220e-50 |
| MsG0380015852.01 | MsG0880046440.01 | 0.819972 | 8.769596e-53 | 6.850162e-50 |
| MsG0280006586.01 | MsG0380015852.01 | 0.818517 | 1.881115e-52 | 1.411188e-49 |
| MsG0280007481.01 | MsG0380015852.01 | 0.867753 | 1.084485e-65 | 3.828903e-62 |
| MsG0280008073.01 | MsG0380015852.01 | 0.815526 | 8.836571e-52 | 6.107203e-49 |
| MsG0280008220.01 | MsG0380015852.01 | 0.806735 | 7.119419e-50 | 3.893793e-47 |
| MsG0280008270.01 | MsG0380015852.01 | 0.841441 | 4.744066e-58 | 6.971827e-55 |
| MsG0280010170.01 | MsG0380015852.01 | 0.866601 | 2.531022e-65 | 8.580168e-62 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380015852.01 | MsG0380017755.01 | PPI |
| MsG0380015852.01 | MsG0380015003.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015852.01.T01 | MTR_3g078633 | 91.640 | 622 | 40 | 3 | 1 | 614 | 1 | 618 | 0.0 | 1174 |
| MsG0380015852.01.T01 | MTR_3g078633 | 92.039 | 515 | 33 | 2 | 104 | 614 | 36 | 546 | 0.0 | 984 |
| MsG0380015852.01.T01 | MTR_3g079340 | 51.050 | 619 | 272 | 13 | 13 | 614 | 12 | 616 | 0.0 | 587 |
| MsG0380015852.01.T01 | MTR_8g494200 | 25.081 | 614 | 362 | 24 | 34 | 598 | 43 | 607 | 9.47e-48 | 177 |
| MsG0380015852.01.T01 | MTR_3g081450 | 76.238 | 101 | 20 | 1 | 499 | 599 | 32 | 128 | 1.32e-45 | 160 |
| MsG0380015852.01.T01 | MTR_0095s0020 | 26.686 | 341 | 186 | 14 | 117 | 434 | 155 | 454 | 1.70e-25 | 112 |
| MsG0380015852.01.T01 | MTR_3g467360 | 26.966 | 356 | 203 | 17 | 272 | 595 | 215 | 545 | 4.01e-21 | 97.8 |
| MsG0380015852.01.T01 | MTR_3g467360 | 26.966 | 356 | 203 | 17 | 272 | 595 | 209 | 539 | 4.73e-21 | 97.8 |
| MsG0380015852.01.T01 | MTR_6g007985 | 24.576 | 354 | 217 | 13 | 271 | 595 | 133 | 465 | 3.95e-19 | 91.3 |
| MsG0380015852.01.T01 | MTR_6g008015 | 24.576 | 354 | 217 | 13 | 271 | 595 | 210 | 542 | 4.61e-19 | 91.7 |
| MsG0380015852.01.T01 | MTR_6g008055 | 24.251 | 367 | 195 | 15 | 274 | 596 | 213 | 540 | 4.61e-15 | 79.0 |
| MsG0380015852.01.T01 | MTR_6g007975 | 24.586 | 362 | 208 | 16 | 271 | 596 | 210 | 542 | 5.81e-15 | 78.6 |
| MsG0380015852.01.T01 | MTR_6g007980 | 22.817 | 355 | 223 | 13 | 272 | 597 | 209 | 541 | 7.30e-14 | 75.1 |
| MsG0380015852.01.T01 | MTR_6g007980 | 23.034 | 356 | 222 | 13 | 272 | 597 | 209 | 542 | 7.64e-14 | 75.1 |
| MsG0380015852.01.T01 | MTR_6g007980 | 22.969 | 357 | 222 | 13 | 272 | 597 | 209 | 543 | 7.92e-14 | 75.1 |
| MsG0380015852.01.T01 | MTR_8g011610 | 41.379 | 87 | 48 | 1 | 112 | 195 | 225 | 311 | 5.26e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015852.01.T01 | AT3G48090 | 39.280 | 639 | 312 | 15 | 13 | 609 | 9 | 613 | 2.02e-141 | 425 |
| MsG0380015852.01.T01 | AT3G48080 | 37.727 | 607 | 316 | 15 | 35 | 603 | 29 | 611 | 2.93e-130 | 396 |
| MsG0380015852.01.T01 | AT3G48090 | 41.604 | 536 | 243 | 12 | 112 | 609 | 2 | 505 | 3.48e-129 | 390 |
| MsG0380015852.01.T01 | AT3G52430 | 25.356 | 351 | 205 | 13 | 264 | 580 | 175 | 502 | 1.91e-23 | 105 |
| MsG0380015852.01.T01 | AT3G52430 | 44.000 | 75 | 38 | 2 | 119 | 193 | 112 | 182 | 6.95e-11 | 65.5 |
| MsG0380015852.01.T01 | AT5G14930 | 28.319 | 226 | 127 | 9 | 398 | 597 | 293 | 509 | 3.10e-14 | 76.3 |
Find 139 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAATATCTTTGAATCTT+TGG | 0.137148 | 3:-75851914 | None:intergenic |
| CCAAAGATTCAAAGATATTT+TGG | 0.139370 | 3:+75851914 | MsG0380015852.01.T01:CDS |
| GTTACTCAGAATCATGTTTA+TGG | 0.160363 | 3:+75854535 | MsG0380015852.01.T01:CDS |
| TAATGCATGATTGTTCTTTA+TGG | 0.162207 | 3:-75854743 | None:intergenic |
| GGGATACGATCGGAAGATTT+TGG | 0.194261 | 3:-75852694 | None:intergenic |
| CCTCCCATCTGCATTACTTT+TGG | 0.239470 | 3:+75852715 | MsG0380015852.01.T01:CDS |
| TGGCCAGTTGGCCAATTAAA+TGG | 0.244082 | 3:-75851432 | None:intergenic |
| GGCTATTCTGGCAACACTTT+GGG | 0.244937 | 3:+75852651 | MsG0380015852.01.T01:CDS |
| TTGTACGGTCTCCATTTAAT+TGG | 0.249151 | 3:+75851421 | MsG0380015852.01.T01:five_prime_UTR |
| GTCATTTAAGGCTATGTTAA+TGG | 0.251285 | 3:-75853349 | None:intergenic |
| GCTCATGAATGATTTGCTTT+TGG | 0.251739 | 3:-75852905 | None:intergenic |
| ATGCTACAAGGAGAGAAAAT+TGG | 0.262993 | 3:+75852770 | MsG0380015852.01.T01:CDS |
| CTTTGTTTGGTTATGTAATA+AGG | 0.263679 | 3:+75854886 | MsG0380015852.01.T01:three_prime_UTR |
| GGCTAGAACTTGCAGGAGTA+TGG | 0.273354 | 3:+75854274 | MsG0380015852.01.T01:CDS |
| TACCAGGCCAAGGTCATTTA+AGG | 0.278195 | 3:-75853361 | None:intergenic |
| TCGTTCCCTTCTAAGTCTTC+TGG | 0.280228 | 3:-75854333 | None:intergenic |
| TGGTGGTCCAGTGGCTATTC+TGG | 0.280884 | 3:+75852639 | MsG0380015852.01.T01:CDS |
| CCGTGATGGACGTGTTTATA+TGG | 0.287982 | 3:+75854437 | MsG0380015852.01.T01:CDS |
| GGCTGATAAGGATGTGTTTA+AGG | 0.289164 | 3:+75854665 | MsG0380015852.01.T01:CDS |
| ACATTTGCTTGGAAATCTTC+CGG | 0.306152 | 3:-75854246 | None:intergenic |
| AGTTTCACCAAAAGTTGTTT+TGG | 0.309827 | 3:-75851814 | None:intergenic |
| GTTGGATCATGCACTTTGTT+TGG | 0.317127 | 3:+75854873 | MsG0380015852.01.T01:three_prime_UTR |
| TGGTTTCTTGTGAGCCTTCA+AGG | 0.321792 | 3:-75851709 | None:intergenic |
| TGGTATTCCAAAACAACTTT+TGG | 0.322409 | 3:+75851807 | MsG0380015852.01.T01:CDS |
| TTGTCTGAGCATACTACTTC+AGG | 0.335540 | 3:+75853312 | MsG0380015852.01.T01:CDS |
| TCTTTGGTCTGTGGAAAGTA+TGG | 0.349731 | 3:-75851553 | None:intergenic |
| TGTCATATCTCATCACAAAA+TGG | 0.352184 | 3:-75852807 | None:intergenic |
| CATCAGGTGCTTTCAAAGAT+TGG | 0.360920 | 3:+75851787 | MsG0380015852.01.T01:CDS |
| GAACTTCCAGAAGACTTAGA+AGG | 0.361685 | 3:+75854327 | MsG0380015852.01.T01:CDS |
| ACTTAGAAGGGAACGAAGAT+TGG | 0.364202 | 3:+75854340 | MsG0380015852.01.T01:CDS |
| TTACTCAGAATCATGTTTAT+GGG | 0.367047 | 3:+75854536 | MsG0380015852.01.T01:CDS |
| ACATGCTGCTTGTAGGCTAA+TGG | 0.368160 | 3:+75853005 | MsG0380015852.01.T01:CDS |
| CATTTGCTTGGAAATCTTCC+GGG | 0.374664 | 3:-75854245 | None:intergenic |
| TAAGTTCCAAAGGGTCTATA+AGG | 0.375128 | 3:-75853078 | None:intergenic |
| TTGAGTCCTTATAGACCCTT+TGG | 0.379079 | 3:+75853072 | MsG0380015852.01.T01:CDS |
| AGAGGAGCTAGGAGGATTCT+TGG | 0.379820 | 3:-75852835 | None:intergenic |
| TAGAAGACTAGTTGAGCCTT+TGG | 0.383000 | 3:+75854383 | MsG0380015852.01.T01:CDS |
| TCACAAGACATGCTGCTTGT+AGG | 0.383836 | 3:+75852998 | MsG0380015852.01.T01:CDS |
| TCAAGCAGCTGCAGCATTAG+AGG | 0.386121 | 3:+75854083 | MsG0380015852.01.T01:CDS |
| GTCATTTGATGCGTCCTTGA+AGG | 0.386377 | 3:+75851695 | MsG0380015852.01.T01:CDS |
| CTAAAGGAGGAAGGCCAAAA+AGG | 0.396329 | 3:+75854460 | MsG0380015852.01.T01:CDS |
| CATGCTGCTTGTAGGCTAAT+GGG | 0.400385 | 3:+75853006 | MsG0380015852.01.T01:CDS |
| TCTAGAAGGTAGTGTCTCTC+TGG | 0.408942 | 3:-75851729 | None:intergenic |
| ATCATCAGCTTTCCAGCATC+AGG | 0.410129 | 3:+75851771 | MsG0380015852.01.T01:CDS |
| TGGCTATTCTGGCAACACTT+TGG | 0.417209 | 3:+75852650 | MsG0380015852.01.T01:CDS |
| TGCTACAAGGAGAGAAAATT+GGG | 0.419960 | 3:+75852771 | MsG0380015852.01.T01:CDS |
| TCACATTTATTACACAATAT+AGG | 0.422806 | 3:-75854921 | None:intergenic |
| ACATCATCAAAAGGCTTGTC+AGG | 0.423403 | 3:-75854585 | None:intergenic |
| AACGAAGATTGGATTAAGAT+AGG | 0.426436 | 3:+75854351 | MsG0380015852.01.T01:CDS |
| GTACAGAGGCTAGAACTTGC+AGG | 0.431181 | 3:+75854267 | MsG0380015852.01.T01:CDS |
| CTAGCCTCTGTACATTTGCT+TGG | 0.431295 | 3:-75854257 | None:intergenic |
| TGTTGTGTACTTAGACCAAC+TGG | 0.432263 | 3:+75853278 | MsG0380015852.01.T01:CDS |
| TGAGAAAGATGAGGCTGATA+AGG | 0.438651 | 3:+75854653 | MsG0380015852.01.T01:CDS |
| CTAATTACTATAGACATTCA+AGG | 0.443986 | 3:+75854412 | MsG0380015852.01.T01:CDS |
| TCTCCATTTAATTGGCCAAC+TGG | 0.447440 | 3:+75851429 | MsG0380015852.01.T01:five_prime_UTR |
| ATTATACTAATATAGTACTT+TGG | 0.447774 | 3:+75854825 | MsG0380015852.01.T01:three_prime_UTR |
| TAAGGAAAAGGTTGAGGCAT+TGG | 0.451260 | 3:+75854608 | MsG0380015852.01.T01:CDS |
| AAGAAGCAGATAGTGTTTGC+AGG | 0.453653 | 3:+75852607 | MsG0380015852.01.T01:CDS |
| ATGACCTGCAGAATTGCATC+AGG | 0.455008 | 3:-75853153 | None:intergenic |
| TTTCGTTCACTTAAAAGCAT+TGG | 0.464216 | 3:+75851855 | MsG0380015852.01.T01:CDS |
| GATTGTTCTTTATGGTCTGT+TGG | 0.470082 | 3:-75854735 | None:intergenic |
| TCTTTGAAAGCACCTGATGC+TGG | 0.472238 | 3:-75851783 | None:intergenic |
| CAATGAATATGTAGGTGGAT+AGG | 0.474650 | 3:+75852572 | MsG0380015852.01.T01:intron |
| GGAAAAGGTTGAGGCATTGG+AGG | 0.475367 | 3:+75854611 | MsG0380015852.01.T01:CDS |
| AATGAATATGTAGGTGGATA+GGG | 0.479173 | 3:+75852573 | MsG0380015852.01.T01:intron |
| CATTATGAGAAGAGGGATGA+AGG | 0.484238 | 3:+75854510 | MsG0380015852.01.T01:CDS |
| AGGTTATTACGATGCATTCA+AGG | 0.484769 | 3:+75854212 | MsG0380015852.01.T01:CDS |
| AATATGTGATTTCCAACTAA+AGG | 0.485127 | 3:-75852742 | None:intergenic |
| CTTGAACCTGGTTGGCCAGT+TGG | 0.486227 | 3:-75851444 | None:intergenic |
| TGGATTCTACGTTTGTTAAG+TGG | 0.487040 | 3:+75854700 | MsG0380015852.01.T01:CDS |
| AACATAGCCTTAAATGACCT+TGG | 0.489141 | 3:+75853354 | MsG0380015852.01.T01:CDS |
| AGTGTGAGCTATAGTTCAGT+TGG | 0.490945 | 3:+75854855 | MsG0380015852.01.T01:three_prime_UTR |
| TGCACTACAAGTGGCGATGA+AGG | 0.491111 | 3:+75853108 | MsG0380015852.01.T01:CDS |
| GTGTTTGCAGGACACTCGTC+TGG | 0.495509 | 3:+75852619 | MsG0380015852.01.T01:CDS |
| TTACAACAACTATTATTGTA+CGG | 0.504134 | 3:+75851406 | MsG0380015852.01.T01:five_prime_UTR |
| GCAGAAAATGTAAGTTCCAA+AGG | 0.507553 | 3:-75853088 | None:intergenic |
| CACAGGTGCTGCTTATCCAC+TGG | 0.507899 | 3:+75854786 | MsG0380015852.01.T01:three_prime_UTR |
| GTTGGAACATTATGAGAAGA+GGG | 0.510509 | 3:+75854503 | MsG0380015852.01.T01:CDS |
| TTCATGAGCGAATCGAGTCT+TGG | 0.516950 | 3:+75852919 | MsG0380015852.01.T01:CDS |
| GAAGTAGTATGCTCAGACAA+AGG | 0.517071 | 3:-75853309 | None:intergenic |
| CCAGTTCAAAATGTTGTCGC+AGG | 0.517117 | 3:-75853233 | None:intergenic |
| AATTGGCCAACTGGCCAACC+AGG | 0.519323 | 3:+75851438 | MsG0380015852.01.T01:five_prime_UTR |
| AGATAGCCGCTGTGGAGGAT+AGG | 0.526622 | 3:+75854142 | MsG0380015852.01.T01:CDS |
| TGGTAACAATGAAGCTGCTA+AGG | 0.528491 | 3:+75851875 | MsG0380015852.01.T01:CDS |
| TGATGTTAAGGAAAAGGTTG+AGG | 0.529296 | 3:+75854602 | MsG0380015852.01.T01:CDS |
| GCTAGAACTTGCAGGAGTAT+GGG | 0.533503 | 3:+75854275 | MsG0380015852.01.T01:CDS |
| AAACCCTGATGCAATTCTGC+AGG | 0.542505 | 3:+75853149 | MsG0380015852.01.T01:CDS |
| ATTCTACGTTTGTTAAGTGG+TGG | 0.545586 | 3:+75854703 | MsG0380015852.01.T01:CDS |
| GGACGTGTTTATATGGCTAA+AGG | 0.547868 | 3:+75854444 | MsG0380015852.01.T01:CDS |
| AGCCTTAAATGACCTTGGCC+TGG | 0.548198 | 3:+75853359 | MsG0380015852.01.T01:CDS |
| TAGGTATACACAAAGATGGT+TGG | 0.548252 | 3:+75854485 | MsG0380015852.01.T01:CDS |
| GGAGGATAGGATGAAAGCAC+TGG | 0.548822 | 3:+75854155 | MsG0380015852.01.T01:CDS |
| TCATCACAAAATGGAAGAAG+TGG | 0.551943 | 3:-75852798 | None:intergenic |
| CAGAAAATGTAAGTTCCAAA+GGG | 0.551969 | 3:-75853087 | None:intergenic |
| CGAAAGAAGATAGAGGAGCT+AGG | 0.552232 | 3:-75852846 | None:intergenic |
| ATCATGTTTATGGGCTGAAG+TGG | 0.554848 | 3:+75854545 | MsG0380015852.01.T01:CDS |
| AACTTCCAGAAGACTTAGAA+GGG | 0.561390 | 3:+75854328 | MsG0380015852.01.T01:CDS |
| GGTATAGGTATACACAAAGA+TGG | 0.561423 | 3:+75854481 | MsG0380015852.01.T01:CDS |
| AAGCTCTGAAGAAGAAGCTG+AGG | 0.562108 | 3:+75853194 | MsG0380015852.01.T01:CDS |
| GGTTGGAACATTATGAGAAG+AGG | 0.569597 | 3:+75854502 | MsG0380015852.01.T01:CDS |
| ATGTTTATGGGCTGAAGTGG+AGG | 0.574694 | 3:+75854548 | MsG0380015852.01.T01:CDS |
| CAAAAGTAATGCAGATGGGA+GGG | 0.576141 | 3:-75852714 | None:intergenic |
| AAGCTGATGATAACTTCTGA+AGG | 0.579352 | 3:-75851759 | None:intergenic |
| AAAAGCATATGTCTTCAACT+TGG | 0.579608 | 3:+75851512 | MsG0380015852.01.T01:five_prime_UTR |
| ACACACATGGCTTCATCAAG+AGG | 0.586314 | 3:+75851630 | MsG0380015852.01.T01:exon |
| AGAACCAAAAGTAATGCAGA+TGG | 0.587556 | 3:-75852719 | None:intergenic |
| TGGAGGAATTTATAAGCAAG+TGG | 0.588253 | 3:+75854628 | MsG0380015852.01.T01:CDS |
| AAGGGTCTATAAGGACTCAA+AGG | 0.589494 | 3:-75853069 | None:intergenic |
| TTATAACTGCATTAATCCAG+TGG | 0.589743 | 3:-75854802 | None:intergenic |
| AAAGTCATCACTTGAAGATG+AGG | 0.590426 | 3:+75851938 | MsG0380015852.01.T01:CDS |
| ACAAAAGATAGCCGCTGTGG+AGG | 0.604033 | 3:+75854137 | MsG0380015852.01.T01:CDS |
| CAGCTGCAGCATTAGAGGAA+CGG | 0.605468 | 3:+75854088 | MsG0380015852.01.T01:CDS |
| AAAGGTTGCATACCAGGCCA+AGG | 0.614366 | 3:-75853371 | None:intergenic |
| AGTGTTGCCAGAATAGCCAC+TGG | 0.614618 | 3:-75852646 | None:intergenic |
| GGACAGTTACAGAGAAACGC+GGG | 0.617330 | 3:+75854176 | MsG0380015852.01.T01:CDS |
| CGTGTTTATATGGCTAAAGG+AGG | 0.625592 | 3:+75854447 | MsG0380015852.01.T01:CDS |
| TTTATATGGCTAAAGGAGGA+AGG | 0.625809 | 3:+75854451 | MsG0380015852.01.T01:CDS |
| CCAAAAGTAATGCAGATGGG+AGG | 0.626384 | 3:-75852715 | None:intergenic |
| CCATATAAACACGTCCATCA+CGG | 0.630887 | 3:-75854437 | None:intergenic |
| GTCTTGTTGAAGTGTGACAC+AGG | 0.632853 | 3:+75854769 | MsG0380015852.01.T01:exon |
| TATGAGAAGAGGGATGAAGG+TGG | 0.634440 | 3:+75854513 | MsG0380015852.01.T01:CDS |
| TTTGCAGGACACTCGTCTGG+TGG | 0.640829 | 3:+75852622 | MsG0380015852.01.T01:CDS |
| ACACTCGTCTGGTGGTCCAG+TGG | 0.641162 | 3:+75852630 | MsG0380015852.01.T01:CDS |
| AGACATTCAAGGAACCGTGA+TGG | 0.644212 | 3:+75854423 | MsG0380015852.01.T01:CDS |
| GAACCAAAAGTAATGCAGAT+GGG | 0.645149 | 3:-75852718 | None:intergenic |
| TCTGAGCATACTACTTCAGG+TGG | 0.659119 | 3:+75853315 | MsG0380015852.01.T01:CDS |
| TGAGCTATATCTTGTTTGTG+AGG | 0.662845 | 3:+75854941 | MsG0380015852.01.T01:three_prime_UTR |
| GCAGATGGGAGGGATACGAT+CGG | 0.665165 | 3:-75852704 | None:intergenic |
| TAGTAATTAGCAATATCCAA+AGG | 0.665329 | 3:-75854399 | None:intergenic |
| TGACCTGCAGAATTGCATCA+GGG | 0.674595 | 3:-75853152 | None:intergenic |
| GCTACAAAAGATAGCCGCTG+TGG | 0.677260 | 3:+75854134 | MsG0380015852.01.T01:CDS |
| CACATGGCTTCATCAAGAGG+TGG | 0.677661 | 3:+75851633 | MsG0380015852.01.T01:exon |
| ATTCAAGGATCAATTAGACC+CGG | 0.679489 | 3:+75854227 | MsG0380015852.01.T01:CDS |
| ATTTCCAAGCAAATGTACAG+AGG | 0.698435 | 3:+75854253 | MsG0380015852.01.T01:CDS |
| AAGAAGATAGAGGAGCTAGG+AGG | 0.700489 | 3:-75852843 | None:intergenic |
| TGGACAGTTACAGAGAAACG+CGG | 0.726781 | 3:+75854175 | MsG0380015852.01.T01:CDS |
| CAAGTGGCATGAGAAAGATG+AGG | 0.734716 | 3:+75854644 | MsG0380015852.01.T01:CDS |
| GACAGTTACAGAGAAACGCG+GGG | 0.746046 | 3:+75854177 | MsG0380015852.01.T01:CDS |
| TTTCATCCTATCCTCCACAG+CGG | 0.790893 | 3:-75854148 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACATATTTAATAACTC+AGG | + | Chr3:75852420-75852439 | MsG0380015852.01.T01:intron | 15.0% |
| !! | ATATATTTCAATGAATATGT+AGG | + | Chr3:75852564-75852583 | MsG0380015852.01.T01:intron | 15.0% |
| !! | ATATGAGTATATAAAGTAAA+AGG | - | Chr3:75853472-75853491 | None:intergenic | 15.0% |
| !! | ATTATACTAATATAGTACTT+TGG | + | Chr3:75854825-75854844 | MsG0380015852.01.T01:three_prime_UTR | 15.0% |
| !!! | ACAAAATTAATTTTCAACTT+AGG | - | Chr3:75852186-75852205 | None:intergenic | 15.0% |
| !!! | CTTTTTTTATCATATTGTTT+AGG | - | Chr3:75851497-75851516 | None:intergenic | 15.0% |
| !! | CATAATCAGATATAATTGAA+TGG | + | Chr3:75853799-75853818 | MsG0380015852.01.T01:intron | 20.0% |
| !! | GTAGTAATTTATTAGACATA+AGG | - | Chr3:75853612-75853631 | None:intergenic | 20.0% |
| !! | TCACATTTATTACACAATAT+AGG | - | Chr3:75854924-75854943 | None:intergenic | 20.0% |
| !! | TTAAGTATAGATGCTATAAA+AGG | - | Chr3:75852042-75852061 | None:intergenic | 20.0% |
| !! | TTACAACAACTATTATTGTA+CGG | + | Chr3:75851406-75851425 | MsG0380015852.01.T01:five_prime_UTR | 20.0% |
| !!! | AAACTAATATTGAGTTGTTT+TGG | - | Chr3:75852093-75852112 | None:intergenic | 20.0% |
| !!! | AATGTCATGTATAATTTGTT+GGG | + | Chr3:75852343-75852362 | MsG0380015852.01.T01:intron | 20.0% |
| ! | AATATGTGATTTCCAACTAA+AGG | - | Chr3:75852745-75852764 | None:intergenic | 25.0% |
| ! | AATCAGATATGTCACTAATA+TGG | - | Chr3:75853516-75853535 | None:intergenic | 25.0% |
| ! | CCAAAATATCTTTGAATCTT+TGG | - | Chr3:75851917-75851936 | None:intergenic | 25.0% |
| ! | CTAATTACTATAGACATTCA+AGG | + | Chr3:75854412-75854431 | MsG0380015852.01.T01:CDS | 25.0% |
| ! | TAATGCATGATTGTTCTTTA+TGG | - | Chr3:75854746-75854765 | None:intergenic | 25.0% |
| ! | TAGTAATTAGCAATATCCAA+AGG | - | Chr3:75854402-75854421 | None:intergenic | 25.0% |
| ! | TATTTCAATGAATATGTAGG+TGG | + | Chr3:75852567-75852586 | MsG0380015852.01.T01:intron | 25.0% |
| ! | TCTCATGTATTATGTATGAT+AGG | - | Chr3:75853878-75853897 | None:intergenic | 25.0% |
| ! | TTAACATTAGAGACTCAATT+AGG | + | Chr3:75852112-75852131 | MsG0380015852.01.T01:intron | 25.0% |
| ! | TTACTCAGAATCATGTTTAT+GGG | + | Chr3:75854536-75854555 | MsG0380015852.01.T01:CDS | 25.0% |
| ! | TTTGAACTGGTAAAAAACTT+TGG | + | Chr3:75853246-75853265 | MsG0380015852.01.T01:CDS | 25.0% |
| !! | CAATGTCATGTATAATTTGT+TGG | + | Chr3:75852342-75852361 | MsG0380015852.01.T01:intron | 25.0% |
| !! | CCAAAGATTCAAAGATATTT+TGG | + | Chr3:75851914-75851933 | MsG0380015852.01.T01:CDS | 25.0% |
| !! | CTTTGTTTGGTTATGTAATA+AGG | + | Chr3:75854886-75854905 | MsG0380015852.01.T01:three_prime_UTR | 25.0% |
| !! | TTTTCCTTAACATCATCAAA+AGG | - | Chr3:75854597-75854616 | None:intergenic | 25.0% |
| !!! | ACTTTAAAATCGCCAAAAAT+AGG | - | Chr3:75853404-75853423 | None:intergenic | 25.0% |
| !!! | ATCACATGGATTTGTTAAAA+AGG | + | Chr3:75852508-75852527 | MsG0380015852.01.T01:intron | 25.0% |
| !!! | CATTTTTAGCATTAAGGATA+GGG | - | Chr3:75852068-75852087 | None:intergenic | 25.0% |
| !!! | CTTTAAAATCGCCAAAAATA+GGG | - | Chr3:75853403-75853422 | None:intergenic | 25.0% |
| !!! | TACAGTCTCAGTTTTTTAAT+AGG | + | Chr3:75854990-75855009 | MsG0380015852.01.T01:three_prime_UTR | 25.0% |
| !!! | TCATTTTTAGCATTAAGGAT+AGG | - | Chr3:75852069-75852088 | None:intergenic | 25.0% |
| !!! | TGCTATTTTTTCATGTTCAA+TGG | - | Chr3:75853990-75854009 | None:intergenic | 25.0% |
| !!! | TTAACTCCTTGTTTTTTCTT+TGG | - | Chr3:75851572-75851591 | None:intergenic | 25.0% |
| !!! | TTGGTTCATTTTTAGCATTA+AGG | - | Chr3:75852074-75852093 | None:intergenic | 25.0% |
| !!! | TTTTGATGATGTTAAGGAAA+AGG | + | Chr3:75854596-75854615 | MsG0380015852.01.T01:CDS | 25.0% |
| AACGAAGATTGGATTAAGAT+AGG | + | Chr3:75854351-75854370 | MsG0380015852.01.T01:CDS | 30.0% | |
| AATGAATATGTAGGTGGATA+GGG | + | Chr3:75852573-75852592 | MsG0380015852.01.T01:intron | 30.0% | |
| ATTTGATTCATGTACCAAGT+TGG | - | Chr3:75852150-75852169 | None:intergenic | 30.0% | |
| CAGAAAATGTAAGTTCCAAA+GGG | - | Chr3:75853090-75853109 | None:intergenic | 30.0% | |
| GTTACTCAGAATCATGTTTA+TGG | + | Chr3:75854535-75854554 | MsG0380015852.01.T01:CDS | 30.0% | |
| TGACACTATCAAATATCACA+TGG | + | Chr3:75852494-75852513 | MsG0380015852.01.T01:intron | 30.0% | |
| TGTCATATCTCATCACAAAA+TGG | - | Chr3:75852810-75852829 | None:intergenic | 30.0% | |
| TTATAACTGCATTAATCCAG+TGG | - | Chr3:75854805-75854824 | None:intergenic | 30.0% | |
| TTGACTTAAAAACTTGAACC+TGG | - | Chr3:75851459-75851478 | None:intergenic | 30.0% | |
| TTTGCATAACTAGATACACA+TGG | - | Chr3:75851998-75852017 | None:intergenic | 30.0% | |
| ! | AAAAGCATATGTCTTCAACT+TGG | + | Chr3:75851512-75851531 | MsG0380015852.01.T01:five_prime_UTR | 30.0% |
| ! | ACATATTTTCTCATGCTACA+AGG | + | Chr3:75852758-75852777 | MsG0380015852.01.T01:CDS | 30.0% |
| ! | ACATGACATTGACATACTTT+TGG | - | Chr3:75852333-75852352 | None:intergenic | 30.0% |
| ! | AGTTTCACCAAAAGTTGTTT+TGG | - | Chr3:75851817-75851836 | None:intergenic | 30.0% |
| ! | ATACTTTTGGTCCTTAAAGA+GGG | - | Chr3:75852320-75852339 | None:intergenic | 30.0% |
| ! | GTCATTTAAGGCTATGTTAA+TGG | - | Chr3:75853352-75853371 | None:intergenic | 30.0% |
| ! | GTGCAACTGTTTCAAATTTT+TGG | - | Chr3:75852873-75852892 | None:intergenic | 30.0% |
| ! | TGGTATTCCAAAACAACTTT+TGG | + | Chr3:75851807-75851826 | MsG0380015852.01.T01:CDS | 30.0% |
| ! | TGTGTATACCTATACCTTTT+TGG | - | Chr3:75854477-75854496 | None:intergenic | 30.0% |
| ! | TTTCGTTCACTTAAAAGCAT+TGG | + | Chr3:75851855-75851874 | MsG0380015852.01.T01:CDS | 30.0% |
| !!! | ATGTTTTTAGTCCCTCTTTA+AGG | + | Chr3:75852306-75852325 | MsG0380015852.01.T01:intron | 30.0% |
| !!! | CTCATGAATGATTTGCTTTT+GGG | - | Chr3:75852907-75852926 | None:intergenic | 30.0% |
| !!! | GTTTAAGGATGTGTTTTTAG+TGG | + | Chr3:75854680-75854699 | MsG0380015852.01.T01:CDS | 30.0% |
| AAAATCGCCAAAAATAGGGA+AGG | - | Chr3:75853399-75853418 | None:intergenic | 35.0% | |
| AAAGTCATCACTTGAAGATG+AGG | + | Chr3:75851938-75851957 | MsG0380015852.01.T01:CDS | 35.0% | |
| AACTTCCAGAAGACTTAGAA+GGG | + | Chr3:75854328-75854347 | MsG0380015852.01.T01:CDS | 35.0% | |
| AAGCTGATGATAACTTCTGA+AGG | - | Chr3:75851762-75851781 | None:intergenic | 35.0% | |
| ACATAGTTTCATTTCCACCA+AGG | - | Chr3:75853954-75853973 | None:intergenic | 35.0% | |
| ACATTTGCTTGGAAATCTTC+CGG | - | Chr3:75854249-75854268 | None:intergenic | 35.0% | |
| ACTTGCAGGAACTAAAAAGT+AGG | - | Chr3:75852275-75852294 | None:intergenic | 35.0% | |
| AGAACCAAAAGTAATGCAGA+TGG | - | Chr3:75852722-75852741 | None:intergenic | 35.0% | |
| AGATACACATGGTAAGATAG+AGG | - | Chr3:75851987-75852006 | None:intergenic | 35.0% | |
| AGGTTATTACGATGCATTCA+AGG | + | Chr3:75854212-75854231 | MsG0380015852.01.T01:CDS | 35.0% | |
| ATGCTACAAGGAGAGAAAAT+TGG | + | Chr3:75852770-75852789 | MsG0380015852.01.T01:CDS | 35.0% | |
| ATTCAAGGATCAATTAGACC+CGG | + | Chr3:75854227-75854246 | MsG0380015852.01.T01:CDS | 35.0% | |
| ATTTCCAAGCAAATGTACAG+AGG | + | Chr3:75854253-75854272 | MsG0380015852.01.T01:CDS | 35.0% | |
| CAATGAATATGTAGGTGGAT+AGG | + | Chr3:75852572-75852591 | MsG0380015852.01.T01:intron | 35.0% | |
| CACAGACCAAAGAAAAAACA+AGG | + | Chr3:75851563-75851582 | MsG0380015852.01.T01:five_prime_UTR | 35.0% | |
| CCAAAAATAGGGAAGGATAA+AGG | - | Chr3:75853392-75853411 | None:intergenic | 35.0% | |
| CTTAAAAACTTGAACCTGGT+TGG | - | Chr3:75851455-75851474 | None:intergenic | 35.0% | |
| GAACCAAAAGTAATGCAGAT+GGG | - | Chr3:75852721-75852740 | None:intergenic | 35.0% | |
| GATTGTTCTTTATGGTCTGT+TGG | - | Chr3:75854738-75854757 | None:intergenic | 35.0% | |
| GCAGAAAATGTAAGTTCCAA+AGG | - | Chr3:75853091-75853110 | None:intergenic | 35.0% | |
| GGCAATTTATTTGTCCAACT+TGG | + | Chr3:75852133-75852152 | MsG0380015852.01.T01:intron | 35.0% | |
| GGTATAGGTATACACAAAGA+TGG | + | Chr3:75854481-75854500 | MsG0380015852.01.T01:CDS | 35.0% | |
| GTGTAATGCATATAACAGCA+TGG | - | Chr3:75853930-75853949 | None:intergenic | 35.0% | |
| GTTATATGCATTACACACCT+TGG | + | Chr3:75853934-75853953 | MsG0380015852.01.T01:intron | 35.0% | |
| GTTGGAACATTATGAGAAGA+GGG | + | Chr3:75854503-75854522 | MsG0380015852.01.T01:CDS | 35.0% | |
| TAAGTTCCAAAGGGTCTATA+AGG | - | Chr3:75853081-75853100 | None:intergenic | 35.0% | |
| TAGGTATACACAAAGATGGT+TGG | + | Chr3:75854485-75854504 | MsG0380015852.01.T01:CDS | 35.0% | |
| TCATCACAAAATGGAAGAAG+TGG | - | Chr3:75852801-75852820 | None:intergenic | 35.0% | |
| TGATGTTAAGGAAAAGGTTG+AGG | + | Chr3:75854602-75854621 | MsG0380015852.01.T01:CDS | 35.0% | |
| TGCTACAAGGAGAGAAAATT+GGG | + | Chr3:75852771-75852790 | MsG0380015852.01.T01:CDS | 35.0% | |
| TGGAGGAATTTATAAGCAAG+TGG | + | Chr3:75854628-75854647 | MsG0380015852.01.T01:CDS | 35.0% | |
| TTGTACGGTCTCCATTTAAT+TGG | + | Chr3:75851421-75851440 | MsG0380015852.01.T01:five_prime_UTR | 35.0% | |
| TTTATATGGCTAAAGGAGGA+AGG | + | Chr3:75854451-75854470 | MsG0380015852.01.T01:CDS | 35.0% | |
| ! | AACATAGCCTTAAATGACCT+TGG | + | Chr3:75853354-75853373 | MsG0380015852.01.T01:CDS | 35.0% |
| ! | ACAAAGGAAGATTTTCCAGT+TGG | - | Chr3:75853296-75853315 | None:intergenic | 35.0% |
| ! | ATTCTACGTTTGTTAAGTGG+TGG | + | Chr3:75854703-75854722 | MsG0380015852.01.T01:CDS | 35.0% |
| ! | ATTTGTTGGGAGTGAAAAGT+GGG | + | Chr3:75852356-75852375 | MsG0380015852.01.T01:intron | 35.0% |
| ! | CATACTTTTGGTCCTTAAAG+AGG | - | Chr3:75852321-75852340 | None:intergenic | 35.0% |
| ! | CCTTTATCCTTCCCTATTTT+TGG | + | Chr3:75853389-75853408 | MsG0380015852.01.T01:intron | 35.0% |
| ! | CTGAAGGATTCTTTTCTAGA+AGG | - | Chr3:75851746-75851765 | None:intergenic | 35.0% |
| ! | TACATTTTCTGCACTACAAG+TGG | + | Chr3:75853099-75853118 | MsG0380015852.01.T01:CDS | 35.0% |
| ! | TGAGCTATATCTTGTTTGTG+AGG | + | Chr3:75854941-75854960 | MsG0380015852.01.T01:three_prime_UTR | 35.0% |
| ! | TGGAGTTGGAAAGTTTTCTA+AGG | - | Chr3:75852677-75852696 | None:intergenic | 35.0% |
| ! | TGGATTCTACGTTTGTTAAG+TGG | + | Chr3:75854700-75854719 | MsG0380015852.01.T01:CDS | 35.0% |
| ! | TTTTGGTCGAAAGAAGATAG+AGG | - | Chr3:75852856-75852875 | None:intergenic | 35.0% |
| !! | AATTTGTTGGGAGTGAAAAG+TGG | + | Chr3:75852355-75852374 | MsG0380015852.01.T01:intron | 35.0% |
| !!! | ACTTTTGGTTCTCCTTTAGT+TGG | + | Chr3:75852730-75852749 | MsG0380015852.01.T01:CDS | 35.0% |
| !!! | CAAGCCTTTTGATGATGTTA+AGG | + | Chr3:75854590-75854609 | MsG0380015852.01.T01:CDS | 35.0% |
| !!! | CTTGTTTTTTCTTTGGTCTG+TGG | - | Chr3:75851565-75851584 | None:intergenic | 35.0% |
| !!! | GCTCATGAATGATTTGCTTT+TGG | - | Chr3:75852908-75852927 | None:intergenic | 35.0% |
| AAGAAGCAGATAGTGTTTGC+AGG | + | Chr3:75852607-75852626 | MsG0380015852.01.T01:CDS | 40.0% | |
| AAGGATAAAGGTTGCATACC+AGG | - | Chr3:75853380-75853399 | None:intergenic | 40.0% | |
| AAGGGTCTATAAGGACTCAA+AGG | - | Chr3:75853072-75853091 | None:intergenic | 40.0% | |
| ACATCATCAAAAGGCTTGTC+AGG | - | Chr3:75854588-75854607 | None:intergenic | 40.0% | |
| ACTTAGAAGGGAACGAAGAT+TGG | + | Chr3:75854340-75854359 | MsG0380015852.01.T01:CDS | 40.0% | |
| AGTGTGAGCTATAGTTCAGT+TGG | + | Chr3:75854855-75854874 | MsG0380015852.01.T01:three_prime_UTR | 40.0% | |
| ATATGCATTACACACCTTGG+TGG | + | Chr3:75853937-75853956 | MsG0380015852.01.T01:intron | 40.0% | |
| CAAAAGTAATGCAGATGGGA+GGG | - | Chr3:75852717-75852736 | None:intergenic | 40.0% | |
| CATCAGGTGCTTTCAAAGAT+TGG | + | Chr3:75851787-75851806 | MsG0380015852.01.T01:CDS | 40.0% | |
| CATTATGAGAAGAGGGATGA+AGG | + | Chr3:75854510-75854529 | MsG0380015852.01.T01:CDS | 40.0% | |
| CATTTGCTTGGAAATCTTCC+GGG | - | Chr3:75854248-75854267 | None:intergenic | 40.0% | |
| CCATATAAACACGTCCATCA+CGG | - | Chr3:75854440-75854459 | None:intergenic | 40.0% | |
| CGTGTTTATATGGCTAAAGG+AGG | + | Chr3:75854447-75854466 | MsG0380015852.01.T01:CDS | 40.0% | |
| GAACTTCCAGAAGACTTAGA+AGG | + | Chr3:75854327-75854346 | MsG0380015852.01.T01:CDS | 40.0% | |
| GAAGTAGTATGCTCAGACAA+AGG | - | Chr3:75853312-75853331 | None:intergenic | 40.0% | |
| GGACGTGTTTATATGGCTAA+AGG | + | Chr3:75854444-75854463 | MsG0380015852.01.T01:CDS | 40.0% | |
| GGCTGATAAGGATGTGTTTA+AGG | + | Chr3:75854665-75854684 | MsG0380015852.01.T01:CDS | 40.0% | |
| GGTTGGAACATTATGAGAAG+AGG | + | Chr3:75854502-75854521 | MsG0380015852.01.T01:CDS | 40.0% | |
| GTTGGATCATGCACTTTGTT+TGG | + | Chr3:75854873-75854892 | MsG0380015852.01.T01:three_prime_UTR | 40.0% | |
| TAAGGAAAAGGTTGAGGCAT+TGG | + | Chr3:75854608-75854627 | MsG0380015852.01.T01:CDS | 40.0% | |
| TCTCCATTTAATTGGCCAAC+TGG | + | Chr3:75851429-75851448 | MsG0380015852.01.T01:five_prime_UTR | 40.0% | |
| TCTTTGGTCTGTGGAAAGTA+TGG | - | Chr3:75851556-75851575 | None:intergenic | 40.0% | |
| TGAGAAAGATGAGGCTGATA+AGG | + | Chr3:75854653-75854672 | MsG0380015852.01.T01:CDS | 40.0% | |
| TGGTAACAATGAAGCTGCTA+AGG | + | Chr3:75851875-75851894 | MsG0380015852.01.T01:CDS | 40.0% | |
| TGTTGTGTACTTAGACCAAC+TGG | + | Chr3:75853278-75853297 | MsG0380015852.01.T01:CDS | 40.0% | |
| TTGAGTCCTTATAGACCCTT+TGG | + | Chr3:75853072-75853091 | MsG0380015852.01.T01:CDS | 40.0% | |
| TTGTCTGAGCATACTACTTC+AGG | + | Chr3:75853312-75853331 | MsG0380015852.01.T01:CDS | 40.0% | |
| ! | AATGTTGTCGCAGGCTTTTA+AGG | - | Chr3:75853227-75853246 | None:intergenic | 40.0% |
| ! | ATCATGTTTATGGGCTGAAG+TGG | + | Chr3:75854545-75854564 | MsG0380015852.01.T01:CDS | 40.0% |
| ! | ATGTTGTCGCAGGCTTTTAA+GGG | - | Chr3:75853226-75853245 | None:intergenic | 40.0% |
| ! | CATGCAACTTTGTAACTTGC+AGG | - | Chr3:75852289-75852308 | None:intergenic | 40.0% |
| ! | TAGAAGACTAGTTGAGCCTT+TGG | + | Chr3:75854383-75854402 | MsG0380015852.01.T01:CDS | 40.0% |
| AAACCCTGATGCAATTCTGC+AGG | + | Chr3:75853149-75853168 | MsG0380015852.01.T01:CDS | 45.0% | |
| AACACACACACACACACACA+TGG | + | Chr3:75851617-75851636 | MsG0380015852.01.T01:exon | 45.0% | |
| AAGAAGATAGAGGAGCTAGG+AGG | - | Chr3:75852846-75852865 | None:intergenic | 45.0% | |
| ACACACATGGCTTCATCAAG+AGG | + | Chr3:75851630-75851649 | MsG0380015852.01.T01:exon | 45.0% | |
| AGACATTCAAGGAACCGTGA+TGG | + | Chr3:75854423-75854442 | MsG0380015852.01.T01:CDS | 45.0% | |
| ATCATCAGCTTTCCAGCATC+AGG | + | Chr3:75851771-75851790 | MsG0380015852.01.T01:CDS | 45.0% | |
| ATGACCTGCAGAATTGCATC+AGG | - | Chr3:75853156-75853175 | None:intergenic | 45.0% | |
| CAAGTGGCATGAGAAAGATG+AGG | + | Chr3:75854644-75854663 | MsG0380015852.01.T01:CDS | 45.0% | |
| CCAAAAGTAATGCAGATGGG+AGG | - | Chr3:75852718-75852737 | None:intergenic | 45.0% | |
| CCAGTTCAAAATGTTGTCGC+AGG | - | Chr3:75853236-75853255 | None:intergenic | 45.0% | |
| CGAAAGAAGATAGAGGAGCT+AGG | - | Chr3:75852849-75852868 | None:intergenic | 45.0% | |
| CTAAAGGAGGAAGGCCAAAA+AGG | + | Chr3:75854460-75854479 | MsG0380015852.01.T01:CDS | 45.0% | |
| CTAGCCTCTGTACATTTGCT+TGG | - | Chr3:75854260-75854279 | None:intergenic | 45.0% | |
| GGCTATTCTGGCAACACTTT+GGG | + | Chr3:75852651-75852670 | MsG0380015852.01.T01:CDS | 45.0% | |
| GGGAGTGAAAAGTGGGTATA+GGG | + | Chr3:75852363-75852382 | MsG0380015852.01.T01:intron | 45.0% | |
| GTCATTTGATGCGTCCTTGA+AGG | + | Chr3:75851695-75851714 | MsG0380015852.01.T01:CDS | 45.0% | |
| TACCAGGCCAAGGTCATTTA+AGG | - | Chr3:75853364-75853383 | None:intergenic | 45.0% | |
| TATGAGAAGAGGGATGAAGG+TGG | + | Chr3:75854513-75854532 | MsG0380015852.01.T01:CDS | 45.0% | |
| TCGTTCCCTTCTAAGTCTTC+TGG | - | Chr3:75854336-75854355 | None:intergenic | 45.0% | |
| TCTAGAAGGTAGTGTCTCTC+TGG | - | Chr3:75851732-75851751 | None:intergenic | 45.0% | |
| TCTGAGCATACTACTTCAGG+TGG | + | Chr3:75853315-75853334 | MsG0380015852.01.T01:CDS | 45.0% | |
| TGACCTGCAGAATTGCATCA+GGG | - | Chr3:75853155-75853174 | None:intergenic | 45.0% | |
| TGGACAGTTACAGAGAAACG+CGG | + | Chr3:75854175-75854194 | MsG0380015852.01.T01:CDS | 45.0% | |
| TGGCCAGTTGGCCAATTAAA+TGG | - | Chr3:75851435-75851454 | None:intergenic | 45.0% | |
| TGGCTATTCTGGCAACACTT+TGG | + | Chr3:75852650-75852669 | MsG0380015852.01.T01:CDS | 45.0% | |
| TGGGAGTGAAAAGTGGGTAT+AGG | + | Chr3:75852362-75852381 | MsG0380015852.01.T01:intron | 45.0% | |
| TGGTTTCTTGTGAGCCTTCA+AGG | - | Chr3:75851712-75851731 | None:intergenic | 45.0% | |
| TTCATGAGCGAATCGAGTCT+TGG | + | Chr3:75852919-75852938 | MsG0380015852.01.T01:CDS | 45.0% | |
| TTTCATCCTATCCTCCACAG+CGG | - | Chr3:75854151-75854170 | None:intergenic | 45.0% | |
| ! | ACATGCTGCTTGTAGGCTAA+TGG | + | Chr3:75853005-75853024 | MsG0380015852.01.T01:CDS | 45.0% |
| ! | ATGTTTATGGGCTGAAGTGG+AGG | + | Chr3:75854548-75854567 | MsG0380015852.01.T01:CDS | 45.0% |
| ! | CATGCTGCTTGTAGGCTAAT+GGG | + | Chr3:75853006-75853025 | MsG0380015852.01.T01:CDS | 45.0% |
| ! | CCTCCCATCTGCATTACTTT+TGG | + | Chr3:75852715-75852734 | MsG0380015852.01.T01:CDS | 45.0% |
| ! | CCTGCGACAACATTTTGAAC+TGG | + | Chr3:75853233-75853252 | MsG0380015852.01.T01:CDS | 45.0% |
| ! | GAGGAAGGCCAAAAAGGTAT+AGG | + | Chr3:75854466-75854485 | MsG0380015852.01.T01:CDS | 45.0% |
| ! | GCTAGAACTTGCAGGAGTAT+GGG | + | Chr3:75854275-75854294 | MsG0380015852.01.T01:CDS | 45.0% |
| ! | GGGATACGATCGGAAGATTT+TGG | - | Chr3:75852697-75852716 | None:intergenic | 45.0% |
| ! | GTCTTGTTGAAGTGTGACAC+AGG | + | Chr3:75854769-75854788 | MsG0380015852.01.T01:exon | 45.0% |
| ! | TCACAAGACATGCTGCTTGT+AGG | + | Chr3:75852998-75853017 | MsG0380015852.01.T01:CDS | 45.0% |
| ! | TGTTGTCGCAGGCTTTTAAG+GGG | - | Chr3:75853225-75853244 | None:intergenic | 45.0% |
| !! | AAGCTCTGAAGAAGAAGCTG+AGG | + | Chr3:75853194-75853213 | MsG0380015852.01.T01:CDS | 45.0% |
| !! | CCGTGATGGACGTGTTTATA+TGG | + | Chr3:75854437-75854456 | MsG0380015852.01.T01:CDS | 45.0% |
| !! | TCTTTGAAAGCACCTGATGC+TGG | - | Chr3:75851786-75851805 | None:intergenic | 45.0% |
| !!! | CGATCGGAAGATTTTGGAGT+TGG | - | Chr3:75852691-75852710 | None:intergenic | 45.0% |
| AAAGGTTGCATACCAGGCCA+AGG | - | Chr3:75853374-75853393 | None:intergenic | 50.0% | |
| ACAAAAGATAGCCGCTGTGG+AGG | + | Chr3:75854137-75854156 | MsG0380015852.01.T01:CDS | 50.0% | |
| ACGCGGGGACATCAGAAAAA+AGG | + | Chr3:75854192-75854211 | MsG0380015852.01.T01:CDS | 50.0% | |
| AGAGGAGCTAGGAGGATTCT+TGG | - | Chr3:75852838-75852857 | None:intergenic | 50.0% | |
| AGCCTTAAATGACCTTGGCC+TGG | + | Chr3:75853359-75853378 | MsG0380015852.01.T01:CDS | 50.0% | |
| AGTGTTGCCAGAATAGCCAC+TGG | - | Chr3:75852649-75852668 | None:intergenic | 50.0% | |
| CACATGGCTTCATCAAGAGG+TGG | + | Chr3:75851633-75851652 | MsG0380015852.01.T01:exon | 50.0% | |
| CAGCTGCAGCATTAGAGGAA+CGG | + | Chr3:75854088-75854107 | MsG0380015852.01.T01:CDS | 50.0% | |
| GACAGTTACAGAGAAACGCG+GGG | + | Chr3:75854177-75854196 | MsG0380015852.01.T01:CDS | 50.0% | |
| GCTACAAAAGATAGCCGCTG+TGG | + | Chr3:75854134-75854153 | MsG0380015852.01.T01:CDS | 50.0% | |
| GGACAGTTACAGAGAAACGC+GGG | + | Chr3:75854176-75854195 | MsG0380015852.01.T01:CDS | 50.0% | |
| GGCTAGAACTTGCAGGAGTA+TGG | + | Chr3:75854274-75854293 | MsG0380015852.01.T01:CDS | 50.0% | |
| GTACAGAGGCTAGAACTTGC+AGG | + | Chr3:75854267-75854286 | MsG0380015852.01.T01:CDS | 50.0% | |
| TCAAGCAGCTGCAGCATTAG+AGG | + | Chr3:75854083-75854102 | MsG0380015852.01.T01:CDS | 50.0% | |
| TGCACTACAAGTGGCGATGA+AGG | + | Chr3:75853108-75853127 | MsG0380015852.01.T01:CDS | 50.0% | |
| ! | GGAGGATAGGATGAAAGCAC+TGG | + | Chr3:75854155-75854174 | MsG0380015852.01.T01:CDS | 50.0% |
| !! | GGAAAAGGTTGAGGCATTGG+AGG | + | Chr3:75854611-75854630 | MsG0380015852.01.T01:CDS | 50.0% |
| AATTGGCCAACTGGCCAACC+AGG | + | Chr3:75851438-75851457 | MsG0380015852.01.T01:five_prime_UTR | 55.0% | |
| AGATAGCCGCTGTGGAGGAT+AGG | + | Chr3:75854142-75854161 | MsG0380015852.01.T01:CDS | 55.0% | |
| GCAGATGGGAGGGATACGAT+CGG | - | Chr3:75852707-75852726 | None:intergenic | 55.0% | |
| GTGTTTGCAGGACACTCGTC+TGG | + | Chr3:75852619-75852638 | MsG0380015852.01.T01:CDS | 55.0% | |
| TGGTGGTCCAGTGGCTATTC+TGG | + | Chr3:75852639-75852658 | MsG0380015852.01.T01:CDS | 55.0% | |
| TTTGCAGGACACTCGTCTGG+TGG | + | Chr3:75852622-75852641 | MsG0380015852.01.T01:CDS | 55.0% | |
| ! | CTTGAACCTGGTTGGCCAGT+TGG | - | Chr3:75851447-75851466 | None:intergenic | 55.0% |
| !! | CACAGGTGCTGCTTATCCAC+TGG | + | Chr3:75854786-75854805 | MsG0380015852.01.T01:three_prime_UTR | 55.0% |
| ACACTCGTCTGGTGGTCCAG+TGG | + | Chr3:75852630-75852649 | MsG0380015852.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 75851400 | 75855034 | 75851400 | ID=MsG0380015852.01;Name=MsG0380015852.01 |
| Chr3 | mRNA | 75851400 | 75855034 | 75851400 | ID=MsG0380015852.01.T01;Parent=MsG0380015852.01;Name=MsG0380015852.01.T01;_AED=0.46;_eAED=0.46;_QI=236|1|1|1|1|1|3|249|614 |
| Chr3 | exon | 75851400 | 75851959 | 75851400 | ID=MsG0380015852.01.T01:exon:24455;Parent=MsG0380015852.01.T01 |
| Chr3 | exon | 75852586 | 75853380 | 75852586 | ID=MsG0380015852.01.T01:exon:24456;Parent=MsG0380015852.01.T01 |
| Chr3 | exon | 75854060 | 75855034 | 75854060 | ID=MsG0380015852.01.T01:exon:24457;Parent=MsG0380015852.01.T01 |
| Chr3 | five_prime_UTR | 75851400 | 75851635 | 75851400 | ID=MsG0380015852.01.T01:five_prime_utr;Parent=MsG0380015852.01.T01 |
| Chr3 | CDS | 75851636 | 75851959 | 75851636 | ID=MsG0380015852.01.T01:cds;Parent=MsG0380015852.01.T01 |
| Chr3 | CDS | 75852586 | 75853380 | 75852586 | ID=MsG0380015852.01.T01:cds;Parent=MsG0380015852.01.T01 |
| Chr3 | CDS | 75854060 | 75854785 | 75854060 | ID=MsG0380015852.01.T01:cds;Parent=MsG0380015852.01.T01 |
| Chr3 | three_prime_UTR | 75854786 | 75855034 | 75854786 | ID=MsG0380015852.01.T01:three_prime_utr;Parent=MsG0380015852.01.T01 |
| Gene Sequence |
| Protein sequence |
