AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039229.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039229.01.T01 MTR_7g068290 98.374 246 2 2 21 265 1 245 6.33e-179 492
MsG0780039229.01.T01 MTR_4g015600 77.826 230 50 1 21 250 6 234 7.53e-138 388
MsG0780039229.01.T01 MTR_4g088950 66.957 230 75 1 21 250 7 235 3.68e-117 336
MsG0780039229.01.T01 MTR_2g013080 67.111 225 73 1 25 249 14 237 2.65e-112 323
MsG0780039229.01.T01 MTR_3g463720 61.778 225 85 1 25 249 6 229 1.88e-103 301
MsG0780039229.01.T01 MTR_4g015600 77.011 174 39 1 21 194 6 178 3.54e-101 293
MsG0780039229.01.T01 MTR_3g463720 59.903 207 82 1 43 249 23 228 2.03e-91 270
MsG0780039229.01.T01 MTR_4g015600 74.534 161 40 1 90 250 22 181 2.55e-88 261
MsG0780039229.01.T01 MTR_4g088950 67.045 176 57 1 21 196 7 181 5.20e-85 252
MsG0780039229.01.T01 MTR_2g013080 65.909 176 59 1 25 200 14 188 1.16e-80 243
MsG0780039229.01.T01 MTR_4g015600 75.200 125 30 1 126 250 2 125 3.90e-66 202
MsG0780039229.01.T01 MTR_8g079910 44.206 233 122 4 22 247 7 238 1.68e-61 194
MsG0780039229.01.T01 MTR_3g086130 42.616 237 126 3 20 247 8 243 3.36e-60 191
MsG0780039229.01.T01 MTR_4g015600 71.429 105 29 1 90 194 22 125 1.11e-51 165
MsG0780039229.01.T01 MTR_8g079910 43.333 180 94 4 22 194 7 185 3.42e-40 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039229.01.T01 AT5G01520 75.217 230 56 1 21 250 1 229 2.38e-130 369
MsG0780039229.01.T01 AT3G47160 70.485 227 66 1 24 250 5 230 7.74e-123 350
MsG0780039229.01.T01 AT3G47160 66.946 239 66 2 24 250 5 242 2.19e-119 342
MsG0780039229.01.T01 AT5G58787 65.532 235 77 2 24 258 5 235 2.78e-107 310
MsG0780039229.01.T01 AT3G47160 69.588 194 58 1 57 250 1 193 2.75e-103 299
MsG0780039229.01.T01 AT5G01520 75.723 173 41 1 21 193 1 172 1.20e-96 281
MsG0780039229.01.T01 AT5G58787 61.702 235 71 3 24 258 5 220 3.05e-95 280
MsG0780039229.01.T01 AT5G58787 58.447 219 72 3 40 258 2 201 3.98e-83 248
MsG0780039229.01.T01 AT1G24440 44.206 233 125 3 19 247 4 235 5.71e-65 203
MsG0780039229.01.T01 AT1G13195 42.174 230 123 4 25 247 16 242 4.39e-61 194
MsG0780039229.01.T01 AT1G24440 43.564 202 109 3 50 247 3 203 1.81e-53 173
MsG0780039229.01.T01 AT1G13195 40.976 205 111 4 50 247 3 204 6.44e-52 169

Find 55 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAAGAAATAGAAGAAAA+AGG 0.270441 7:-60236371 MsG0780039229.01.T01:CDS
TGAAATGAGTAATAAATTAA+AGG 0.281666 7:+60233229 None:intergenic
TAGTACTTTGGTTTGGTACT+AGG 0.319224 7:-60236591 MsG0780039229.01.T01:five_prime_UTR
TGGTTTGTGGCAGGCATATA+AGG 0.326924 7:-60234530 MsG0780039229.01.T01:intron
CCTTTGTCTACTAATTCTTT+AGG 0.342609 7:+60234136 None:intergenic
TAATTTATTACTCATTTCAT+TGG 0.347388 7:-60233225 MsG0780039229.01.T01:three_prime_UTR
AACTTGTGGTTGCCTCTTAG+TGG 0.377314 7:-60233307 MsG0780039229.01.T01:exon
GCAAGTTTGAAGGAGTTCTA+TGG 0.381001 7:-60234472 MsG0780039229.01.T01:intron
AATGATTAATTACAGTGTAT+TGG 0.386819 7:+60236280 None:intergenic
GCACATTGAATGATTGCAAT+TGG 0.387477 7:+60234033 None:intergenic
TGATGATACCATGTGAATAT+AGG 0.389904 7:+60233331 None:intergenic
TGGACTGACTGTCACCTTGC+CGG 0.403227 7:-60235000 MsG0780039229.01.T01:CDS
TGTCACCTTGCCGGAGCCTT+AGG 0.406497 7:-60234991 MsG0780039229.01.T01:CDS
AAAAGGAAGAAGTGTGCAGC+TGG 0.412811 7:+60235033 None:intergenic
ATTGGGCAATACAACTATAC+TGG 0.421843 7:+60234051 None:intergenic
TGAAAGAAAAGCAAGTTTGA+AGG 0.452336 7:-60234482 MsG0780039229.01.T01:CDS
TTGAATGAGCTTCCACTAAG+AGG 0.453265 7:+60233295 None:intergenic
GATCATGCGAAAGTCTTTCA+AGG 0.464400 7:-60236339 MsG0780039229.01.T01:CDS
TTCTGATTATCCAAGTGATC+AGG 0.471148 7:-60235091 MsG0780039229.01.T01:CDS
CGGAATCCTGCCCTTTCTGT+CGG 0.473327 7:-60233493 MsG0780039229.01.T01:CDS
GAGTAAACTCAGGTGACCTA+TGG 0.482995 7:-60233457 MsG0780039229.01.T01:CDS
GGAATCCTGCCCTTTCTGTC+GGG 0.494218 7:-60233492 MsG0780039229.01.T01:CDS
CACATTGAATGATTGCAATT+GGG 0.497149 7:+60234034 None:intergenic
GATGATACCATGTGAATATA+GGG 0.498260 7:+60233332 None:intergenic
TACAAGTAACTCACCAGTCT+CGG 0.507418 7:+60233999 None:intergenic
TTTGAGCAAGCCTAAGGCTC+CGG 0.507509 7:+60234981 None:intergenic
TTTAGACTGTCCCGACAGAA+AGG 0.508151 7:+60233482 None:intergenic
GCTCAAAATATTTATATACA+AGG 0.511671 7:-60234965 MsG0780039229.01.T01:intron
TTGGTTTAGGCATGCAAGAT+CGG 0.518970 7:-60233513 MsG0780039229.01.T01:intron
TGTAGGACAATCTCATTTGA+AGG 0.523036 7:+60235058 None:intergenic
TCTGTGAAGTTGCAATAAAG+AGG 0.525633 7:+60234216 None:intergenic
GCATCAAATGCTACCGAGAC+TGG 0.539433 7:-60234012 MsG0780039229.01.T01:intron
TAGGCACCATCCTGATCACT+TGG 0.545027 7:+60235081 None:intergenic
TTGTGGCAGGCATATAAGGA+TGG 0.546686 7:-60234526 MsG0780039229.01.T01:intron
TTAGACTGTCCCGACAGAAA+GGG 0.551728 7:+60233483 None:intergenic
CAGAGGAATCACCGATGTTG+AGG 0.562667 7:-60234197 MsG0780039229.01.T01:CDS
GAAGTGTGCAGCTGGGCTGT+AGG 0.575455 7:+60235041 None:intergenic
CTGTGAAGTTGCAATAAAGA+GGG 0.575980 7:+60234217 None:intergenic
TTGTTTCCTATCCTCAACAT+CGG 0.580839 7:+60234186 None:intergenic
CATGGTATCATCACAACTTG+TGG 0.581482 7:-60233321 MsG0780039229.01.T01:CDS
GGACAATCTCATTTGAAGGT+AGG 0.590167 7:+60235062 None:intergenic
GAATCACCGATGTTGAGGAT+AGG 0.591245 7:-60234192 MsG0780039229.01.T01:CDS
AGAGTGTGATATTTGTTGCA+TGG 0.592145 7:-60234080 MsG0780039229.01.T01:CDS
CCTAAAGAATTAGTAGACAA+AGG 0.598911 7:-60234136 MsG0780039229.01.T01:CDS
TGCTGCTCATGTACATCCAT+AGG 0.601320 7:+60233441 None:intergenic
TGTGGCAGGCATATAAGGAT+GGG 0.605312 7:-60234525 MsG0780039229.01.T01:intron
TGCTAGACCCTATATTCACA+TGG 0.627686 7:-60233339 MsG0780039229.01.T01:CDS
ACTGTCCCGACAGAAAGGGC+AGG 0.630100 7:+60233487 None:intergenic
AAAGGAAGAAGTGTGCAGCT+GGG 0.647627 7:+60235034 None:intergenic
ATATAGGGTCTAGCAACAAG+AGG 0.657403 7:+60233347 None:intergenic
TGATCTTGCTTCAATCAACA+AGG 0.669497 7:-60233408 MsG0780039229.01.T01:CDS
CTTCCTTCACATGTAAAACG+AGG 0.682996 7:-60236548 MsG0780039229.01.T01:intron
GCAAGCCTAAGGCTCCGGCA+AGG 0.685184 7:+60234986 None:intergenic
GATTATCCAAGTGATCAGGA+TGG 0.700149 7:-60235087 MsG0780039229.01.T01:CDS
TCTTTATTGCAACTTCACAG+AGG 0.700321 7:-60234214 MsG0780039229.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATGATATTTTATAATTG+TGG - Chr7:60233708-60233727 MsG0780039229.01.T01:intron 10.0%
!!! AATTCACTTTTTTTTTTAAT+GGG - Chr7:60234625-60234644 MsG0780039229.01.T01:intron 10.0%
!! AAGTAATTTGAAAAAATTCA+TGG - Chr7:60234720-60234739 MsG0780039229.01.T01:intron 15.0%
!! TAATTTATTACTCATTTCAT+TGG - Chr7:60236650-60236669 MsG0780039229.01.T01:five_prime_UTR 15.0%
!! TATTAAAATATAAGCGAAAT+AGG + Chr7:60234600-60234619 None:intergenic 15.0%
!! TATTGAAAACATTTCATAAA+AGG + Chr7:60235241-60235260 None:intergenic 15.0%
!! TGAAATGAGTAATAAATTAA+AGG + Chr7:60236649-60236668 None:intergenic 15.0%
!! TTATACATGATTCTAAATTA+AGG - Chr7:60236116-60236135 MsG0780039229.01.T01:intron 15.0%
!!! ATTCACTTTTTTTTTTAATG+GGG - Chr7:60234626-60234645 MsG0780039229.01.T01:intron 15.0%
!!! GAATTCACTTTTTTTTTTAA+TGG - Chr7:60234624-60234643 MsG0780039229.01.T01:intron 15.0%
!!! GAATTTTTTCAAATTACTTT+TGG + Chr7:60234719-60234738 None:intergenic 15.0%
!!! TTATATAGTTCTATAATACA+AGG + Chr7:60233736-60233755 None:intergenic 15.0%
!!! TTTATGAATGTTGATTTATA+TGG - Chr7:60233643-60233662 MsG0780039229.01.T01:intron 15.0%
!! AAACATTTCATAAAAGGAAA+AGG + Chr7:60235235-60235254 None:intergenic 20.0%
!! AAGAAAGAAATAGAAGAAAA+AGG - Chr7:60233504-60233523 MsG0780039229.01.T01:CDS 20.0%
!! AATAAGCTGAAAACAATTTA+TGG + Chr7:60235058-60235077 None:intergenic 20.0%
!! AATGATTAATTACAGTGTAT+TGG + Chr7:60233598-60233617 None:intergenic 20.0%
!! CATCTAAATACATTATATTG+TGG - Chr7:60236221-60236240 MsG0780039229.01.T01:intron 20.0%
!! GCTCAAAATATTTATATACA+AGG - Chr7:60234910-60234929 MsG0780039229.01.T01:intron 20.0%
!! TATACAAAAGAAACGTAAAA+AGG + Chr7:60234365-60234384 None:intergenic 20.0%
!! TATTGTTTAAAAAAACCAGT+TGG + Chr7:60235526-60235545 None:intergenic 20.0%
!! TTGGTCACTATATTTATTTA+TGG - Chr7:60233417-60233436 MsG0780039229.01.T01:CDS 20.0%
!! TTGGTTTAATTAATTGAGAA+GGG - Chr7:60233386-60233405 MsG0780039229.01.T01:CDS 20.0%
!!! AACAATCTTTTTAGTTAGTT+TGG - Chr7:60236001-60236020 MsG0780039229.01.T01:intron 20.0%
!!! AATGTTGATTTATATGGTTT+TGG - Chr7:60233649-60233668 MsG0780039229.01.T01:intron 20.0%
!!! AGTTTTTGAGTTTTATGAAT+GGG - Chr7:60233462-60233481 MsG0780039229.01.T01:CDS 20.0%
!!! CTATTTATTTTCTAGTACTT+TGG - Chr7:60233272-60233291 MsG0780039229.01.T01:three_prime_UTR 20.0%
!!! GTCTTGTTTATTTAATTTGT+TGG - Chr7:60233771-60233790 MsG0780039229.01.T01:intron 20.0%
!!! TACAAGTCTATTTTATTAAC+AGG - Chr7:60235625-60235644 MsG0780039229.01.T01:intron 20.0%
!!! TATATGTTATTTGTGAAAGA+TGG - Chr7:60234114-60234133 MsG0780039229.01.T01:CDS 20.0%
!!! TTTACGTTTCTTTTGTATAA+TGG - Chr7:60234366-60234385 MsG0780039229.01.T01:intron 20.0%
! ACTAACTAAAAAGATTGTTG+AGG + Chr7:60236000-60236019 None:intergenic 25.0%
! GGATAAACAACTTAATTAAG+CGG + Chr7:60235179-60235198 None:intergenic 25.0%
! TACATCTAATTTATCGTAGT+TGG - Chr7:60234456-60234475 MsG0780039229.01.T01:intron 25.0%
! TAGCTTATATGAAAACAGTT+AGG - Chr7:60235096-60235115 MsG0780039229.01.T01:CDS 25.0%
!! AAAGCAAGTTATTTCCTAAT+TGG + Chr7:60233682-60233701 None:intergenic 25.0%
!! AAATTTACCAAATTGACTCT+TGG + Chr7:60235445-60235464 None:intergenic 25.0%
!! AAGCAAGTTATTTCCTAATT+GGG + Chr7:60233681-60233700 None:intergenic 25.0%
!! ATAAGTTGAATATAGCTTTC+TGG - Chr7:60235555-60235574 MsG0780039229.01.T01:intron 25.0%
!! GTTGGTTTAATTAATTGAGA+AGG - Chr7:60233385-60233404 MsG0780039229.01.T01:CDS 25.0%
!! TTAAGTTGTTTATCCAAACA+TGG - Chr7:60235184-60235203 MsG0780039229.01.T01:intron 25.0%
!! TTAGTTTGGAAGAAAACAAT+CGG - Chr7:60236015-60236034 MsG0780039229.01.T01:intron 25.0%
!! TTTTCTTTCATGAATAGACA+TGG + Chr7:60235383-60235402 None:intergenic 25.0%
!!! CAGTTTTTGAGTTTTATGAA+TGG - Chr7:60233461-60233480 MsG0780039229.01.T01:CDS 25.0%
!!! TAACTTGTTTTTGTTCTTGT+TGG - Chr7:60233367-60233386 MsG0780039229.01.T01:CDS 25.0%
!!! TATTTTCTAGTACTTTGGTT+TGG - Chr7:60233277-60233296 MsG0780039229.01.T01:three_prime_UTR 25.0%
!!! TCTTTTTGACATGTTTTGAT+GGG - Chr7:60234215-60234234 MsG0780039229.01.T01:CDS 25.0%
AATTTATCGTAGTTGGAATG+TGG - Chr7:60234463-60234482 MsG0780039229.01.T01:intron 30.0%
ACAAATGATTTCTCTACTTG+AGG - Chr7:60233840-60233859 MsG0780039229.01.T01:intron 30.0%
ACTAAAAAGATTGTTGAGGT+CGG + Chr7:60235996-60236015 None:intergenic 30.0%
AGTCTAAAAAGAGTAAACTC+AGG - Chr7:60236408-60236427 MsG0780039229.01.T01:exon 30.0%
AGTTAATCAATATCATCCTC+TGG - Chr7:60234069-60234088 MsG0780039229.01.T01:CDS 30.0%
AGTTGCAGATATATAAACTG+TGG + Chr7:60236296-60236315 None:intergenic 30.0%
ATATATCTGCAACTAGTTGA+TGG - Chr7:60236302-60236321 MsG0780039229.01.T01:CDS 30.0%
ATGATTCTAAATTAAGGCTG+CGG - Chr7:60236122-60236141 MsG0780039229.01.T01:intron 30.0%
ATGGAAAAACACCAAAGTAT+TGG + Chr7:60234261-60234280 None:intergenic 30.0%
ATTGAAGAAAACTAGTACTC+TGG + Chr7:60234667-60234686 None:intergenic 30.0%
ATTGAGAAGGGTAATTAGTT+TGG - Chr7:60233398-60233417 MsG0780039229.01.T01:CDS 30.0%
CACATTGAATGATTGCAATT+GGG + Chr7:60235844-60235863 None:intergenic 30.0%
CCTAAAGAATTAGTAGACAA+AGG - Chr7:60235739-60235758 MsG0780039229.01.T01:intron 30.0%
CCTTTGTCTACTAATTCTTT+AGG + Chr7:60235742-60235761 None:intergenic 30.0%
GATGATACCATGTGAATATA+GGG + Chr7:60236546-60236565 None:intergenic 30.0%
GGTTGCATTATTCTAAATTG+AGG - Chr7:60236036-60236055 MsG0780039229.01.T01:intron 30.0%
TAACCATTTATGAGACTGTT+TGG - Chr7:60235002-60235021 MsG0780039229.01.T01:CDS 30.0%
TAGAGAAATCATTTGTCTCT+TGG + Chr7:60233836-60233855 None:intergenic 30.0%
TAGTGAATGATGTACATGTT+TGG - Chr7:60235325-60235344 MsG0780039229.01.T01:intron 30.0%
TCAATGGATAGGAAAAAAAG+AGG - Chr7:60234143-60234162 MsG0780039229.01.T01:CDS 30.0%
TGAAAGAAAAGCAAGTTTGA+AGG - Chr7:60235393-60235412 MsG0780039229.01.T01:intron 30.0%
TGAAAGATGGATCAAATCAA+TGG - Chr7:60234127-60234146 MsG0780039229.01.T01:CDS 30.0%
TGATGATACCATGTGAATAT+AGG + Chr7:60236547-60236566 None:intergenic 30.0%
TGTCCTATATCAAGATTAGA+CGG + Chr7:60234490-60234509 None:intergenic 30.0%
TTTCCAAACAGTCTCATAAA+TGG + Chr7:60235008-60235027 None:intergenic 30.0%
! ATGGTCTTAACTAATCTTTG+TGG - Chr7:60234739-60234758 MsG0780039229.01.T01:intron 30.0%
! CGTTTCTTTTGTATAATGGT+CGG - Chr7:60234370-60234389 MsG0780039229.01.T01:intron 30.0%
! GTCTATTTTATTAACAGGTG+TGG - Chr7:60235630-60235649 MsG0780039229.01.T01:intron 30.0%
! TCATTTTGTTACATTGTCAG+AGG - Chr7:60235908-60235927 MsG0780039229.01.T01:intron 30.0%
! TTTGGACATGTTTGGAATAT+CGG - Chr7:60234953-60234972 MsG0780039229.01.T01:intron 30.0%
! TTTTTCCATAATGTTGTAGC+CGG - Chr7:60234272-60234291 MsG0780039229.01.T01:intron 30.0%
!! AAACGTAAAAAGGTGTTCTT+CGG + Chr7:60234355-60234374 None:intergenic 30.0%
!! AAATATTTTGAGCAAGCCTA+AGG + Chr7:60234903-60234922 None:intergenic 30.0%
!! CTCTTTTTGACATGTTTTGA+TGG - Chr7:60234214-60234233 MsG0780039229.01.T01:CDS 30.0%
!! TTTGTTATTGCGGTAAAATG+CGG - Chr7:60236158-60236177 MsG0780039229.01.T01:intron 30.0%
!!! CTTTTTGACATGTTTTGATG+GGG - Chr7:60234216-60234235 MsG0780039229.01.T01:CDS 30.0%
!!! TCTTCCTTTTTTTGGTTCAA+TGG - Chr7:60234855-60234874 MsG0780039229.01.T01:intron 30.0%
AATGATTTCTCTACTTGAGG+AGG - Chr7:60233843-60233862 MsG0780039229.01.T01:intron 35.0%
ACATGTCAAAAAGAGCTTCA+AGG + Chr7:60234209-60234228 None:intergenic 35.0%
AGGGGACTTAATTGTAGAAA+CGG - Chr7:60234037-60234056 MsG0780039229.01.T01:CDS 35.0%
AGGTAAGTAAAGTCTCATCA+AGG + Chr7:60233928-60233947 None:intergenic 35.0%
AGTGTTACCAAGAGTCAATT+TGG - Chr7:60235435-60235454 MsG0780039229.01.T01:intron 35.0%
ATCTTGTAATAACTGCCAAC+TGG - Chr7:60235508-60235527 MsG0780039229.01.T01:intron 35.0%
ATGTACATCATTCACTAGCA+CGG + Chr7:60235322-60235341 None:intergenic 35.0%
ATGTCCAAAGTAAAGACGAA+GGG + Chr7:60234942-60234961 None:intergenic 35.0%
ATTGGGCAATACAACTATAC+TGG + Chr7:60235827-60235846 None:intergenic 35.0%
CAACATACTAAGACCATGTT+TGG + Chr7:60235200-60235219 None:intergenic 35.0%
CAGTCCATTGAACCAAAAAA+AGG + Chr7:60234862-60234881 None:intergenic 35.0%
CGAAATAGGAAAAGTCTTTC+AGG + Chr7:60234586-60234605 None:intergenic 35.0%
CTGTGAAGTTGCAATAAAGA+GGG + Chr7:60235661-60235680 None:intergenic 35.0%
GATGGATCAAATCAATGGAT+AGG - Chr7:60234132-60234151 MsG0780039229.01.T01:CDS 35.0%
GCACATTGAATGATTGCAAT+TGG + Chr7:60235845-60235864 None:intergenic 35.0%
GTCTTTACTTTGGACATGTT+TGG - Chr7:60234945-60234964 MsG0780039229.01.T01:intron 35.0%
TCTGTGAAGTTGCAATAAAG+AGG + Chr7:60235662-60235681 None:intergenic 35.0%
TCTTTATTGCAACTTCACAG+AGG - Chr7:60235661-60235680 MsG0780039229.01.T01:intron 35.0%
TGATCTTGCTTCAATCAACA+AGG - Chr7:60236467-60236486 MsG0780039229.01.T01:intron 35.0%
TGTAGGACAATCTCATTTGA+AGG + Chr7:60234820-60234839 None:intergenic 35.0%
TTCGACTCTTCTTTGTAAAG+AGG - Chr7:60234316-60234335 MsG0780039229.01.T01:intron 35.0%
TTCTGATTATCCAAGTGATC+AGG - Chr7:60234784-60234803 MsG0780039229.01.T01:intron 35.0%
TTGGATCATCTTTAGCAATG+AGG + Chr7:60233817-60233836 None:intergenic 35.0%
TTGTTTCCTATCCTCAACAT+CGG + Chr7:60235692-60235711 None:intergenic 35.0%
! AGAGTGTGATATTTGTTGCA+TGG - Chr7:60235795-60235814 MsG0780039229.01.T01:intron 35.0%
! GAAAAGAGGTCTTGATAATC+TGG + Chr7:60233963-60233982 None:intergenic 35.0%
! TAATCTGGAGTTCATCTAAG+AGG + Chr7:60233948-60233967 None:intergenic 35.0%
! TTCTCTTTTTGTCCTTCTGT+TGG - Chr7:60236343-60236362 MsG0780039229.01.T01:CDS 35.0%
! TTTTCCATAATGTTGTAGCC+GGG - Chr7:60234273-60234292 MsG0780039229.01.T01:intron 35.0%
!! GGGCTCTAGAAAATAAATCA+TGG + Chr7:60234178-60234197 None:intergenic 35.0%
!! GTTTTGGATACTACCCAATT+AGG - Chr7:60233665-60233684 MsG0780039229.01.T01:intron 35.0%
!! TAGTACTTTGGTTTGGTACT+AGG - Chr7:60233284-60233303 MsG0780039229.01.T01:three_prime_UTR 35.0%
!! TGATGTACATGTTTGGTTTG+TGG - Chr7:60235332-60235351 MsG0780039229.01.T01:intron 35.0%
!!! ACATGTTTTGATGGGGAAAA+AGG - Chr7:60234223-60234242 MsG0780039229.01.T01:CDS 35.0%
!!! TGCACACTTCTTCCTTTTTT+TGG - Chr7:60234847-60234866 MsG0780039229.01.T01:intron 35.0%
!!! TGGGTTTTGTTCTCAAAAGA+AGG - Chr7:60233481-60233500 MsG0780039229.01.T01:CDS 35.0%
!!! TTTTGTCCTTCTGTTGGTTT+AGG - Chr7:60236349-60236368 MsG0780039229.01.T01:CDS 35.0%
AAGAGCTTCAAGGAGGTAAA+AGG + Chr7:60234199-60234218 None:intergenic 40.0%
AATTGAGGTTGCGATTATGC+TGG - Chr7:60236051-60236070 MsG0780039229.01.T01:intron 40.0%
ACTTGGATAATCAGAAGCTC+TGG + Chr7:60234780-60234799 None:intergenic 40.0%
AGAGCTTCAAGGAGGTAAAA+GGG + Chr7:60234198-60234217 None:intergenic 40.0%
ATATAGGGTCTAGCAACAAG+AGG + Chr7:60236531-60236550 None:intergenic 40.0%
CATGGTATCATCACAACTTG+TGG - Chr7:60236554-60236573 MsG0780039229.01.T01:five_prime_UTR 40.0%
CATGTCCAAAGTAAAGACGA+AGG + Chr7:60234943-60234962 None:intergenic 40.0%
CTTCCTTCACATGTAAAACG+AGG - Chr7:60233327-60233346 MsG0780039229.01.T01:CDS 40.0%
CTTTCCCTTCGTCTTTACTT+TGG - Chr7:60234935-60234954 MsG0780039229.01.T01:intron 40.0%
GATCAGGCATTCCAATACTT+TGG - Chr7:60234247-60234266 MsG0780039229.01.T01:intron 40.0%
GATCATGCGAAAGTCTTTCA+AGG - Chr7:60233536-60233555 MsG0780039229.01.T01:intron 40.0%
GATTATCCAAGTGATCAGGA+TGG - Chr7:60234788-60234807 MsG0780039229.01.T01:intron 40.0%
GCAAGTTTGAAGGAGTTCTA+TGG - Chr7:60235403-60235422 MsG0780039229.01.T01:intron 40.0%
GGACAATCTCATTTGAAGGT+AGG + Chr7:60234816-60234835 None:intergenic 40.0%
GGACCGTCTAATCTTGATAT+AGG - Chr7:60234484-60234503 MsG0780039229.01.T01:CDS 40.0%
GGGACTTAATTGTAGAAACG+GGG - Chr7:60234039-60234058 MsG0780039229.01.T01:CDS 40.0%
GGGGACTTAATTGTAGAAAC+GGG - Chr7:60234038-60234057 MsG0780039229.01.T01:CDS 40.0%
GTCGAAATTGCCATAAACTG+AGG + Chr7:60234302-60234321 None:intergenic 40.0%
TACAAGTAACTCACCAGTCT+CGG + Chr7:60235879-60235898 None:intergenic 40.0%
TCTACTTGAGGAGGAATCAA+GGG - Chr7:60233852-60233871 MsG0780039229.01.T01:intron 40.0%
TGCTAGACCCTATATTCACA+TGG - Chr7:60236536-60236555 MsG0780039229.01.T01:intron 40.0%
TGGACTAATAGATCCTGGAT+AGG + Chr7:60235963-60235982 None:intergenic 40.0%
TGTCAAAAAGAGCTTCAAGG+AGG + Chr7:60234206-60234225 None:intergenic 40.0%
TTGAATGAGCTTCCACTAAG+AGG + Chr7:60236583-60236602 None:intergenic 40.0%
TTGGTTTAGGCATGCAAGAT+CGG - Chr7:60236362-60236381 MsG0780039229.01.T01:CDS 40.0%
TTTCCATAATGTTGTAGCCG+GGG - Chr7:60234274-60234293 MsG0780039229.01.T01:intron 40.0%
! GTACCTCGTTTTACATGTGA+AGG + Chr7:60233333-60233352 None:intergenic 40.0%
! TGTCTCTGATGAGTTGAGAA+GGG - Chr7:60234018-60234037 MsG0780039229.01.T01:CDS 40.0%
! TTGTCTCTGATGAGTTGAGA+AGG - Chr7:60234017-60234036 MsG0780039229.01.T01:CDS 40.0%
!! ACGATTAGAAGTACCGTAAG+TGG - Chr7:60233899-60233918 MsG0780039229.01.T01:intron 40.0%
!! CGCTGCAAACTTTGTTATTG+CGG - Chr7:60236148-60236167 MsG0780039229.01.T01:intron 40.0%
AACTTGTGGTTGCCTCTTAG+TGG - Chr7:60236568-60236587 MsG0780039229.01.T01:five_prime_UTR 45.0%
AATCCGGATTCAATGCAGTC+AGG + Chr7:60234552-60234571 None:intergenic 45.0%
AGGTGTTCTTCGGTTAACTC+AGG + Chr7:60234345-60234364 None:intergenic 45.0%
ATCCGGATTCAATGCAGTCA+GGG + Chr7:60234551-60234570 None:intergenic 45.0%
ATTGTTGAGGTCCCTCAAGA+GGG + Chr7:60235987-60236006 None:intergenic 45.0%
CAACAGAATAACGTTGGTCG+TGG + Chr7:60235299-60235318 None:intergenic 45.0%
CTACTTGAGGAGGAATCAAG+GGG - Chr7:60233853-60233872 MsG0780039229.01.T01:intron 45.0%
CTCATCAAGGAGTCCACTTA+CGG + Chr7:60233915-60233934 None:intergenic 45.0%
CTCTACTTGAGGAGGAATCA+AGG - Chr7:60233851-60233870 MsG0780039229.01.T01:intron 45.0%
GAATCACCGATGTTGAGGAT+AGG - Chr7:60235683-60235702 MsG0780039229.01.T01:intron 45.0%
GAGTAAACTCAGGTGACCTA+TGG - Chr7:60236418-60236437 MsG0780039229.01.T01:intron 45.0%
GGTGTTCTTCGGTTAACTCA+GGG + Chr7:60234344-60234363 None:intergenic 45.0%
GTGTTCTTCGGTTAACTCAG+GGG + Chr7:60234343-60234362 None:intergenic 45.0%
TATTAGTCCACCCCTCTTGA+GGG - Chr7:60235973-60235992 MsG0780039229.01.T01:intron 45.0%
TGATGGGGAAAAAGGAGATC+AGG - Chr7:60234231-60234250 MsG0780039229.01.T01:CDS 45.0%
TGCATGCCTAAACCAACAGA+AGG + Chr7:60236358-60236377 None:intergenic 45.0%
TGCTGCTCATGTACATCCAT+AGG + Chr7:60236437-60236456 None:intergenic 45.0%
TGTGGCAGGCATATAAGGAT+GGG - Chr7:60235350-60235369 MsG0780039229.01.T01:intron 45.0%
TTAGACTGTCCCGACAGAAA+GGG + Chr7:60236395-60236414 None:intergenic 45.0%
TTCCCTGACTGCATTGAATC+CGG - Chr7:60234546-60234565 MsG0780039229.01.T01:intron 45.0%
TTGTGGCAGGCATATAAGGA+TGG - Chr7:60235349-60235368 MsG0780039229.01.T01:intron 45.0%
TTTAGACTGTCCCGACAGAA+AGG + Chr7:60236396-60236415 None:intergenic 45.0%
! AAAAGGAAGAAGTGTGCAGC+TGG + Chr7:60234845-60234864 None:intergenic 45.0%
! AAAGGAAGAAGTGTGCAGCT+GGG + Chr7:60234844-60234863 None:intergenic 45.0%
! AAGACCTCTTTTCCCGAGAA+CGG - Chr7:60233970-60233989 MsG0780039229.01.T01:intron 45.0%
! GTCTCTGATGAGTTGAGAAG+GGG - Chr7:60234019-60234038 MsG0780039229.01.T01:CDS 45.0%
! TCAGGTTGCGATTTGCAATC+CGG + Chr7:60234568-60234587 None:intergenic 45.0%
! TGGTTTGTGGCAGGCATATA+AGG - Chr7:60235345-60235364 MsG0780039229.01.T01:intron 45.0%
!! GTACATGTTTGGTTTGTGGC+AGG - Chr7:60235336-60235355 MsG0780039229.01.T01:intron 45.0%
AGGGGTTACCTAGCTAGTGA+AGG - Chr7:60233871-60233890 MsG0780039229.01.T01:intron 50.0%
CAGAGGAATCACCGATGTTG+AGG - Chr7:60235678-60235697 MsG0780039229.01.T01:intron 50.0%
CGTTTCGACCTTCACTAGCT+AGG + Chr7:60233882-60233901 None:intergenic 50.0%
CTATTAGTCCACCCCTCTTG+AGG - Chr7:60235972-60235991 MsG0780039229.01.T01:intron 50.0%
CTGGTTGAAGCAAAGCAGCT+GGG - Chr7:60234088-60234107 MsG0780039229.01.T01:CDS 50.0%
GATTGTTGAGGTCCCTCAAG+AGG + Chr7:60235988-60236007 None:intergenic 50.0%
GCACGGCAACAGAATAACGT+TGG + Chr7:60235305-60235324 None:intergenic 50.0%
GCATCAAATGCTACCGAGAC+TGG - Chr7:60235863-60235882 MsG0780039229.01.T01:intron 50.0%
TAGGCACCATCCTGATCACT+TGG + Chr7:60234797-60234816 None:intergenic 50.0%
TCTGGTTGAAGCAAAGCAGC+TGG - Chr7:60234087-60234106 MsG0780039229.01.T01:CDS 50.0%
TGGTTGAAGCAAAGCAGCTG+GGG - Chr7:60234089-60234108 MsG0780039229.01.T01:CDS 50.0%
TGTAGCGAAAGAGCCTATCC+AGG - Chr7:60235947-60235966 MsG0780039229.01.T01:intron 50.0%
TGTCTTAACCCTCCCGTTCT+CGG + Chr7:60233986-60234005 None:intergenic 50.0%
TTGTTGAGGTCCCTCAAGAG+GGG + Chr7:60235986-60236005 None:intergenic 50.0%
TTTGAGCAAGCCTAAGGCTC+CGG + Chr7:60234897-60234916 None:intergenic 50.0%
! AGACCTCTTTTCCCGAGAAC+GGG - Chr7:60233971-60233990 MsG0780039229.01.T01:intron 50.0%
! AGCTGCTTTGCTTCAACCAG+AGG + Chr7:60234088-60234107 None:intergenic 50.0%
!! AGGGGTGGACTAATAGATCC+TGG + Chr7:60235968-60235987 None:intergenic 50.0%
CGGAATCCTGCCCTTTCTGT+CGG - Chr7:60236382-60236401 MsG0780039229.01.T01:CDS 55.0%
GGAATCCTGCCCTTTCTGTC+GGG - Chr7:60236383-60236402 MsG0780039229.01.T01:CDS 55.0%
GTCTTAACCCTCCCGTTCTC+GGG + Chr7:60233985-60234004 None:intergenic 55.0%
GTGGTTCGCAGTCGCATTTG+TGG + Chr7:60236277-60236296 None:intergenic 55.0%
TGCGGTAAAATGCGGCGATG+TGG - Chr7:60236166-60236185 MsG0780039229.01.T01:intron 55.0%
TGGACTGACTGTCACCTTGC+CGG - Chr7:60234875-60234894 MsG0780039229.01.T01:intron 55.0%
! CTCTTTTCCCGAGAACGGGA+GGG - Chr7:60233975-60233994 MsG0780039229.01.T01:intron 55.0%
ACTGTCCCGACAGAAAGGGC+AGG + Chr7:60236391-60236410 None:intergenic 60.0%
CCTCCCGTTCTCGGGAAAAG+AGG + Chr7:60233977-60233996 None:intergenic 60.0%
CGGCGATGTGGCAGCAATTG+TGG - Chr7:60236178-60236197 MsG0780039229.01.T01:intron 60.0%
GAAGTGTGCAGCTGGGCTGT+AGG + Chr7:60234837-60234856 None:intergenic 60.0%
GCGCCCCGGCTACAACATTA+TGG + Chr7:60234280-60234299 None:intergenic 60.0%
TGTCACCTTGCCGGAGCCTT+AGG - Chr7:60234884-60234903 MsG0780039229.01.T01:intron 60.0%
TTGAGGTCCCTCAAGAGGGG+TGG + Chr7:60235983-60236002 None:intergenic 60.0%
! CCTCTTTTCCCGAGAACGGG+AGG - Chr7:60233974-60233993 MsG0780039229.01.T01:intron 60.0%
! TGCCATAAACTGAGGCGCCC+CGG + Chr7:60234294-60234313 None:intergenic 60.0%
GCAAGCCTAAGGCTCCGGCA+AGG + Chr7:60234892-60234911 None:intergenic 65.0%
! AGCCGGGGCGCCTCAGTTTA+TGG - Chr7:60234289-60234308 MsG0780039229.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 60233185 60236712 60233185 ID=MsG0780039229.01;Name=MsG0780039229.01
Chr7 mRNA 60233185 60236712 60233185 ID=MsG0780039229.01.T01;Parent=MsG0780039229.01;Name=MsG0780039229.01.T01;_AED=0.35;_eAED=0.35;_QI=180|1|1|1|0.8|0.66|6|125|265
Chr7 exon 60233185 60233526 60233185 ID=MsG0780039229.01.T01:exon:16156;Parent=MsG0780039229.01.T01
Chr7 exon 60234013 60234250 60234013 ID=MsG0780039229.01.T01:exon:16155;Parent=MsG0780039229.01.T01
Chr7 exon 60234473 60234539 60234473 ID=MsG0780039229.01.T01:exon:16154;Parent=MsG0780039229.01.T01
Chr7 exon 60234966 60235116 60234966 ID=MsG0780039229.01.T01:exon:16153;Parent=MsG0780039229.01.T01
Chr7 exon 60236293 60236433 60236293 ID=MsG0780039229.01.T01:exon:16152;Parent=MsG0780039229.01.T01
Chr7 exon 60236549 60236712 60236549 ID=MsG0780039229.01.T01:exon:16151;Parent=MsG0780039229.01.T01
Chr7 five_prime_UTR 60236549 60236712 60236549 ID=MsG0780039229.01.T01:five_prime_utr;Parent=MsG0780039229.01.T01
Chr7 five_prime_UTR 60236418 60236433 60236418 ID=MsG0780039229.01.T01:five_prime_utr;Parent=MsG0780039229.01.T01
Chr7 CDS 60236293 60236417 60236293 ID=MsG0780039229.01.T01:cds;Parent=MsG0780039229.01.T01
Chr7 CDS 60234966 60235116 60234966 ID=MsG0780039229.01.T01:cds;Parent=MsG0780039229.01.T01
Chr7 CDS 60234473 60234539 60234473 ID=MsG0780039229.01.T01:cds;Parent=MsG0780039229.01.T01
Chr7 CDS 60234013 60234250 60234013 ID=MsG0780039229.01.T01:cds;Parent=MsG0780039229.01.T01
Chr7 CDS 60233310 60233526 60233310 ID=MsG0780039229.01.T01:cds;Parent=MsG0780039229.01.T01
Chr7 three_prime_UTR 60233185 60233309 60233185 ID=MsG0780039229.01.T01:three_prime_utr;Parent=MsG0780039229.01.T01
Gene Sequence

>MsG0780039229.01.T01

ATGGGTTTTGTTCTCAAAAGAAGGAAGAAAGAAATAGAAGAAAAAGGAACAATAGAGATCATGCGAAAGTCTTTCAAGGATTCTCTCAAAGCTCTTGAAGCTGATATTCAATTTGCCAATACACTAGCTTCTGATTATCCAAGTGATCAGGATGGTGCCTACCTTCAAATGAGATTGTCCTACAGCCCAGCTGCACACTTCTTCCTTTTTTTGGTTCAATGGACTGACTGTCACCTTGCCGGAGCCTTAGGCTTGCTCAAAATATTTATATACAAGGCATATAAGGATGGGAAGACAACCATGTCTATTCATGAAAGAAAAGCAAGTTTGAAGGAGTTCTATGGTGTGGTGTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACCGATGTTGAGGATAGGAAACAAAAACATCTGTGTGCTACTAAGTACAAGCCTAAAGAATTAGTAGACAAAGGAAAGAGCTCTGAAATTGACGTAGAGAAAGAAGAAGAGTGTGATATTTGTTGCATGGAGATTACCAGTATAGTTGTATTGCCCAATTGCAATCATTCAATGTGCATCAAATGCTACCGAGACTGGCATGCAAGATCGGAATCCTGCCCTTTCTGTCGGGACAGTCTAAAAAGAGTAAACTCAGGTGACCTATGGATGTACATGAGCAGCAGTGAGATAGATGATCTTGCTTCAATCAACAAGGAGAATTTGAAAAGACTATTTATGTACATAGAAAAGTTGCCTCTTGTTGCTAGACCCTATATTCACATGGTATCATCACAACTTGTGGTTGCCTCTTAG
Protein sequence

>MsG0780039229.01.T01

MGFVLKRRKKEIEEKGTIEIMRKSFKDSLKALEADIQFANTLASDYPSDQDGAYLQMRLSYSPAAHFFLFLVQWTDCHLAGALGLLKIFIYKAYKDGKTTMSIHERKASLKEFYGVVFPSLLQLHRGITDVEDRKQKHLCATKYKPKELVDKGKSSEIDVEKEEECDICCMEITSIVVLPNCNHSMCIKCYRDWHARSESCPFCRDSLKRVNSGDLWMYMSSSEIDDLASINKENLKRLFMYIEKLPLVARPYIHMVSSQLVVAS*