AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039314.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039314.01.T01 MTR_7g070740 72.766 470 65 2 1 407 23 492 0.0 687
MsG0780039314.01.T01 MTR_7g070660 66.737 472 88 4 1 408 23 489 0.0 630
MsG0780039314.01.T01 MTR_7g071040 67.091 471 91 3 1 407 29 499 0.0 621
MsG0780039314.01.T01 MTR_7g070930 67.516 471 89 3 1 407 26 496 0.0 612
MsG0780039314.01.T01 MTR_7g070610 65.393 471 99 3 1 407 25 495 0.0 611
MsG0780039314.01.T01 MTR_7g055710 66.739 460 90 2 1 397 23 482 0.0 610
MsG0780039314.01.T01 MTR_7g070910 65.042 472 101 3 1 408 23 494 0.0 609
MsG0780039314.01.T01 MTR_7g070780 67.021 470 92 2 1 407 23 492 0.0 603
MsG0780039314.01.T01 MTR_7g070800 63.214 473 106 4 1 409 18 486 0.0 597
MsG0780039314.01.T01 MTR_4g108250 63.502 474 106 4 1 407 23 496 0.0 586
MsG0780039314.01.T01 MTR_7g070860 61.099 473 102 5 1 409 19 473 0.0 566
MsG0780039314.01.T01 MTR_7g070940 55.508 472 138 4 1 409 21 483 2.09e-178 511
MsG0780039314.01.T01 MTR_7g070810 56.211 475 135 4 1 410 21 487 2.60e-178 511
MsG0780039314.01.T01 MTR_7g071050 54.018 448 93 6 1 383 25 424 7.31e-153 444
MsG0780039314.01.T01 MTR_7g070870 50.985 457 160 7 1 410 31 470 2.54e-149 436
MsG0780039314.01.T01 MTR_5g016660 44.776 469 193 4 3 406 24 491 2.03e-131 391
MsG0780039314.01.T01 MTR_8g044140 44.956 456 185 5 14 405 2 455 1.24e-123 370
MsG0780039314.01.T01 MTR_1g040310 43.737 471 198 6 4 411 30 496 5.06e-122 367
MsG0780039314.01.T01 MTR_5g040030 42.521 468 203 5 3 405 28 494 1.04e-116 354
MsG0780039314.01.T01 MTR_5g039900 44.086 465 191 7 3 402 27 487 7.76e-116 352
MsG0780039314.01.T01 MTR_7g470610 56.958 309 52 4 104 349 1 291 1.58e-113 338
MsG0780039314.01.T01 MTR_7g070583 56.958 309 52 4 104 349 1 291 1.58e-113 338
MsG0780039314.01.T01 MTR_6g035295 42.340 470 204 6 1 405 24 491 1.08e-112 343
MsG0780039314.01.T01 MTR_4g485620 36.674 469 217 10 1 401 1 457 9.47e-87 275
MsG0780039314.01.T01 MTR_8g066610 37.045 467 217 11 3 401 23 480 2.09e-83 267
MsG0780039314.01.T01 MTR_4g485630 34.056 461 233 11 3 400 23 475 1.56e-78 254
MsG0780039314.01.T01 MTR_4g117980 33.747 483 231 12 1 408 23 491 3.41e-73 241
MsG0780039314.01.T01 MTR_4g485640 35.560 464 217 9 3 401 223 669 1.23e-72 244
MsG0780039314.01.T01 MTR_4g031800 32.196 469 246 5 3 408 23 482 1.51e-71 236
MsG0780039314.01.T01 MTR_4g117960 33.333 486 228 12 1 408 23 490 2.18e-69 231
MsG0780039314.01.T01 MTR_0536s0020 34.519 478 219 10 1 405 30 486 3.99e-69 230
MsG0780039314.01.T01 MTR_4g117950 33.958 480 216 13 1 406 18 470 4.12e-69 229
MsG0780039314.01.T01 MTR_7g117405 33.120 468 228 12 3 398 26 480 8.98e-69 229
MsG0780039314.01.T01 MTR_0536s0010 33.126 483 219 13 1 408 33 486 2.21e-67 225
MsG0780039314.01.T01 MTR_4g118000 33.613 476 225 11 1 408 24 476 1.31e-65 220
MsG0780039314.01.T01 MTR_8g032950 33.054 478 239 9 1 408 24 490 2.40e-65 220
MsG0780039314.01.T01 MTR_7g012120 34.016 488 220 13 1 408 28 493 2.71e-65 220
MsG0780039314.01.T01 MTR_4g117890 33.472 481 224 11 1 407 25 483 7.39e-64 216
MsG0780039314.01.T01 MTR_4g024020 31.078 473 253 9 1 402 21 491 3.73e-63 214
MsG0780039314.01.T01 MTR_5g045970 31.667 480 235 12 3 402 30 496 2.04e-61 210
MsG0780039314.01.T01 MTR_5g045960 32.704 477 243 13 1 403 21 493 1.92e-59 204
MsG0780039314.01.T01 MTR_2g035020 33.065 496 228 14 1 413 23 497 7.59e-59 203
MsG0780039314.01.T01 MTR_1g062380 29.752 484 246 12 3 405 30 500 1.84e-58 202
MsG0780039314.01.T01 MTR_5g029800 32.041 490 226 12 1 408 23 487 2.10e-58 201
MsG0780039314.01.T01 MTR_6g035265 31.950 482 221 16 1 402 23 477 7.26e-58 200
MsG0780039314.01.T01 MTR_7g102460 30.453 486 244 14 1 407 21 491 1.57e-57 199
MsG0780039314.01.T01 MTR_7g102490 29.668 482 255 10 1 407 21 493 2.58e-57 199
MsG0780039314.01.T01 MTR_7g102550 31.368 475 233 14 3 397 23 484 5.66e-57 197
MsG0780039314.01.T01 MTR_7g070995 64.935 154 17 1 292 408 1 154 8.42e-57 187
MsG0780039314.01.T01 MTR_7g102450 31.489 470 225 14 3 398 25 471 9.46e-57 197
MsG0780039314.01.T01 MTR_5g067170 31.772 491 228 13 1 408 23 489 1.08e-56 197
MsG0780039314.01.T01 MTR_7g102560 30.818 477 237 14 1 398 21 483 1.16e-56 197
MsG0780039314.01.T01 MTR_2g034990 32.186 494 224 13 1 408 23 491 2.16e-56 196
MsG0780039314.01.T01 MTR_4g485590 37.607 351 158 8 3 324 23 341 2.66e-56 194
MsG0780039314.01.T01 MTR_6g035185 32.727 495 222 16 1 408 23 493 3.26e-56 196
MsG0780039314.01.T01 MTR_7g102520 30.526 475 243 12 3 400 26 490 1.81e-55 194
MsG0780039314.01.T01 MTR_7g070760 61.818 165 53 2 164 323 1 160 3.69e-55 184
MsG0780039314.01.T01 MTR_7g039570 45.500 200 106 2 3 201 28 225 8.80e-49 169
MsG0780039314.01.T01 MTR_0536s0030 31.860 430 177 10 17 407 8 360 8.08e-47 167
MsG0780039314.01.T01 MTR_7g470590 73.786 103 26 1 1 102 23 125 8.74e-47 159
MsG0780039314.01.T01 MTR_7g070570 73.786 103 26 1 1 102 23 125 8.74e-47 159
MsG0780039314.01.T01 MTR_7g039550 41.791 268 87 7 200 402 2 265 2.64e-44 158
MsG0780039314.01.T01 MTR_2g035040 32.737 391 166 12 98 408 23 396 3.59e-44 161
MsG0780039314.01.T01 MTR_5g087620 24.236 458 268 13 18 401 41 493 1.34e-28 119
MsG0780039314.01.T01 MTR_8g056710 36.842 209 103 7 112 319 21 201 1.45e-26 107
MsG0780039314.01.T01 MTR_6g014250 24.580 476 261 20 1 398 22 477 9.97e-25 107
MsG0780039314.01.T01 MTR_4g117970 34.419 215 118 8 58 265 53 251 4.00e-24 105
MsG0780039314.01.T01 MTR_8g056740 29.483 329 138 9 19 324 4 261 1.37e-23 103
MsG0780039314.01.T01 MTR_7g080950 23.667 469 248 23 1 398 18 447 3.68e-23 102
MsG0780039314.01.T01 MTR_8g466240 25.370 473 243 16 3 402 22 457 5.51e-23 102
MsG0780039314.01.T01 MTR_6g014290 24.160 476 263 19 1 398 22 477 6.87e-23 102
MsG0780039314.01.T01 MTR_2g098430 23.490 447 240 16 17 384 36 459 1.51e-21 98.2
MsG0780039314.01.T01 MTR_6g038200 24.411 467 249 21 1 398 23 454 2.93e-21 97.1
MsG0780039314.01.T01 MTR_4g095008 25.427 468 253 18 1 398 23 464 4.32e-21 97.1
MsG0780039314.01.T01 MTR_6g014187 23.640 478 280 18 1 406 22 486 4.37e-21 96.7
MsG0780039314.01.T01 MTR_6g014220 23.125 480 263 18 1 398 22 477 6.65e-21 96.3
MsG0780039314.01.T01 MTR_7g070593 88.235 51 6 0 357 407 1 51 7.02e-21 86.7
MsG0780039314.01.T01 MTR_7g011470 24.101 473 255 22 1 398 22 465 7.80e-21 95.9
MsG0780039314.01.T01 MTR_6g038220 24.255 470 245 22 1 398 23 453 1.42e-20 94.7
MsG0780039314.01.T01 MTR_6g014040 23.591 479 265 18 1 398 22 480 2.03e-20 94.7
MsG0780039314.01.T01 MTR_2g008210 22.222 477 277 16 1 402 23 480 3.88e-20 93.6
MsG0780039314.01.T01 MTR_6g014300 25.855 468 251 24 1 398 24 465 8.16e-20 92.8
MsG0780039314.01.T01 MTR_4g094920 23.529 493 273 17 1 417 38 502 9.58e-20 92.8
MsG0780039314.01.T01 MTR_6g038240 23.011 465 268 20 1 403 23 459 1.37e-19 92.0
MsG0780039314.01.T01 MTR_4g094220 24.948 477 264 20 1 399 19 479 2.14e-19 91.7
MsG0780039314.01.T01 MTR_7g011470 24.307 469 255 23 1 398 22 461 2.45e-19 91.3
MsG0780039314.01.T01 MTR_6g014310 23.760 484 257 19 1 398 23 480 2.98e-19 90.9
MsG0780039314.01.T01 MTR_6g038300 23.391 466 256 17 1 398 23 455 4.03e-19 90.5
MsG0780039314.01.T01 MTR_8g083290 22.222 468 270 16 1 396 16 461 1.11e-18 89.4
MsG0780039314.01.T01 MTR_7g080900 23.291 468 251 21 2 398 25 455 1.63e-18 88.6
MsG0780039314.01.T01 MTR_6g013990 23.922 464 253 20 14 398 35 477 2.16e-18 88.6
MsG0780039314.01.T01 MTR_6g014200 23.849 478 264 20 1 398 19 476 2.19e-18 88.2
MsG0780039314.01.T01 MTR_1g107380 24.086 465 269 17 1 398 25 472 2.97e-18 87.8
MsG0780039314.01.T01 MTR_2g059240 25.180 417 237 14 43 398 66 468 4.01e-18 87.4
MsG0780039314.01.T01 MTR_6g038230 22.462 463 263 17 1 398 23 454 4.34e-18 87.4
MsG0780039314.01.T01 MTR_3g084520 22.851 477 277 18 1 403 18 477 1.00e-17 86.3
MsG0780039314.01.T01 MTR_4g008630 28.185 259 110 11 193 387 205 451 3.81e-17 84.3
MsG0780039314.01.T01 MTR_6g014160 25.532 376 209 16 58 398 53 392 4.31e-17 84.0
MsG0780039314.01.T01 MTR_3g084540 22.691 379 213 15 99 404 108 479 6.71e-17 84.0
MsG0780039314.01.T01 MTR_6g013960 22.642 477 271 20 1 398 22 479 7.09e-17 83.6
MsG0780039314.01.T01 MTR_6g013680 25.526 380 221 18 58 398 18 374 1.45e-16 82.0
MsG0780039314.01.T01 MTR_1g029540 28.253 269 98 9 193 387 201 448 1.47e-16 82.8
MsG0780039314.01.T01 MTR_3g084530 22.594 478 267 20 1 398 18 472 2.26e-16 82.0
MsG0780039314.01.T01 MTR_0184s0040 28.519 270 114 10 195 397 222 479 2.85e-16 82.0
MsG0780039314.01.T01 MTR_0078s0190 28.519 270 114 10 195 397 222 479 2.85e-16 82.0
MsG0780039314.01.T01 MTR_7g080940 21.935 465 261 20 1 398 23 452 4.03e-16 81.3
MsG0780039314.01.T01 MTR_6g033675 25.532 470 253 19 1 396 16 462 5.23e-16 80.9
MsG0780039314.01.T01 MTR_7g080935 22.845 464 258 23 1 398 23 452 7.51e-16 80.5
MsG0780039314.01.T01 MTR_5g098930 21.658 374 203 12 100 396 105 465 1.39e-15 79.7
MsG0780039314.01.T01 MTR_1g107350 22.479 476 266 19 1 399 20 469 3.32e-15 78.6
MsG0780039314.01.T01 MTR_1g032490 23.262 374 209 15 1 324 22 367 6.11e-15 77.8
MsG0780039314.01.T01 MTR_5g464760 22.493 369 231 12 1 324 24 382 1.68e-14 76.3
MsG0780039314.01.T01 MTR_0036s0220 23.306 369 226 12 1 324 24 380 2.58e-14 75.9
MsG0780039314.01.T01 MTR_7g113320 32.540 126 82 2 80 202 27 152 3.41e-14 72.0
MsG0780039314.01.T01 MTR_8g090095 27.574 272 136 11 182 395 208 476 4.57e-14 75.1
MsG0780039314.01.T01 MTR_6g013920 22.161 361 215 11 99 398 123 478 6.42e-14 74.3
MsG0780039314.01.T01 MTR_8g071070 25.469 373 193 18 97 401 116 471 1.31e-13 73.6
MsG0780039314.01.T01 MTR_2g008225 25.137 366 201 15 3 324 29 365 1.37e-13 73.6
MsG0780039314.01.T01 MTR_8g006270 29.588 267 112 12 195 395 204 460 2.21e-13 72.8
MsG0780039314.01.T01 MTR_2g008220 24.309 362 209 13 3 324 28 364 4.18e-13 72.0
MsG0780039314.01.T01 MTR_8g083280 22.905 358 207 15 99 398 115 461 7.42e-13 71.2
MsG0780039314.01.T01 MTR_6g023665 23.133 415 221 15 55 394 76 467 1.59e-12 70.1
MsG0780039314.01.T01 MTR_5g016480 22.318 466 279 15 1 398 20 470 2.47e-12 69.3
MsG0780039314.01.T01 MTR_2g083420 24.377 361 207 13 57 373 71 409 3.83e-12 68.6
MsG0780039314.01.T01 MTR_7g013260 22.826 460 250 17 1 395 18 437 4.04e-12 68.6
MsG0780039314.01.T01 MTR_6g033615 26.359 368 167 19 100 394 113 449 4.83e-12 68.6
MsG0780039314.01.T01 MTR_8g465670 22.667 375 191 12 99 395 114 467 7.95e-12 67.8
MsG0780039314.01.T01 MTR_6g005600 25.199 377 188 16 100 401 113 470 3.23e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039314.01.T01 AT2G15490 31.983 469 246 11 1 402 19 481 3.49e-75 246
MsG0780039314.01.T01 AT2G36770 33.613 476 239 11 1 405 26 495 9.64e-75 245
MsG0780039314.01.T01 AT2G15490 31.780 472 246 11 1 402 19 484 1.86e-74 244
MsG0780039314.01.T01 AT2G15480 31.770 469 247 11 1 402 22 484 2.66e-74 243
MsG0780039314.01.T01 AT2G15480 31.172 478 248 11 1 402 22 494 5.94e-74 243
MsG0780039314.01.T01 AT4G34131 33.547 468 235 13 1 400 22 481 2.25e-73 241
MsG0780039314.01.T01 AT2G36800 33.053 475 236 13 1 401 24 490 5.01e-72 238
MsG0780039314.01.T01 AT2G36790 32.770 473 245 10 1 404 25 493 3.59e-71 236
MsG0780039314.01.T01 AT2G36780 32.278 474 248 10 1 405 26 495 2.61e-70 233
MsG0780039314.01.T01 AT2G36750 32.773 476 242 12 1 405 22 490 6.08e-70 232
MsG0780039314.01.T01 AT4G34135 33.049 469 237 13 1 400 23 483 2.96e-69 230
MsG0780039314.01.T01 AT2G36760 31.447 477 250 10 1 406 26 496 1.22e-68 229
MsG0780039314.01.T01 AT4G34138 31.789 475 242 12 1 405 23 485 1.80e-63 215
MsG0780039314.01.T01 AT3G53150 29.412 476 254 10 3 398 36 509 1.05e-53 189
MsG0780039314.01.T01 AT3G53160 29.211 469 255 12 1 398 20 482 9.81e-53 186
MsG0780039314.01.T01 AT4G34135 33.117 308 169 6 1 274 23 327 2.14e-51 179
MsG0780039314.01.T01 AT5G14860 27.463 477 242 20 3 398 22 475 4.15e-30 123
MsG0780039314.01.T01 AT2G15490 31.818 176 104 3 1 164 19 190 4.18e-30 119
MsG0780039314.01.T01 AT1G10400 27.489 462 253 17 1 398 19 462 8.23e-30 122
MsG0780039314.01.T01 AT2G16890 27.371 464 250 19 3 398 23 467 4.51e-28 117
MsG0780039314.01.T01 AT2G16890 27.933 358 204 14 3 324 23 362 3.21e-25 108
MsG0780039314.01.T01 AT1G22380 26.359 368 217 13 1 324 25 382 3.44e-23 103
MsG0780039314.01.T01 AT1G22400 24.632 475 277 18 1 405 25 488 9.82e-23 101
MsG0780039314.01.T01 AT1G22340 25.053 471 260 20 1 395 25 478 1.12e-21 98.6
MsG0780039314.01.T01 AT5G03490 24.706 425 230 18 3 387 33 407 2.80e-21 97.1
MsG0780039314.01.T01 AT1G51210 25.698 358 196 16 3 324 34 357 9.45e-20 92.4
MsG0780039314.01.T01 AT3G11340 24.017 458 260 19 1 401 21 447 7.94e-18 86.7
MsG0780039314.01.T01 AT1G06000 24.138 464 234 19 1 398 22 433 2.23e-17 85.1
MsG0780039314.01.T01 AT1G78270 25.397 378 208 15 1 324 25 382 3.16e-17 84.7
MsG0780039314.01.T01 AT1G73880 23.789 475 265 22 1 405 26 473 5.73e-17 84.0
MsG0780039314.01.T01 AT5G05870 23.465 456 270 18 1 398 20 454 1.79e-16 82.4
MsG0780039314.01.T01 AT4G01070 25.519 482 247 23 3 403 22 472 3.30e-16 81.6
MsG0780039314.01.T01 AT5G12890 21.903 452 266 15 17 397 45 480 3.78e-16 81.6
MsG0780039314.01.T01 AT2G31750 22.718 471 255 22 1 398 20 454 5.90e-16 80.9
MsG0780039314.01.T01 AT2G43840 24.931 361 191 17 99 399 107 447 6.03e-16 80.9
MsG0780039314.01.T01 AT2G31750 22.718 471 255 22 1 398 20 454 8.19e-16 80.5
MsG0780039314.01.T01 AT2G43840 24.654 361 192 17 99 399 107 447 1.33e-15 79.7
MsG0780039314.01.T01 AT2G43820 23.204 362 198 16 99 400 107 448 2.66e-15 78.6
MsG0780039314.01.T01 AT3G02100 23.276 464 261 20 3 400 27 461 3.83e-15 78.2
MsG0780039314.01.T01 AT5G26310 22.951 488 245 23 3 399 21 468 3.39e-14 75.5
MsG0780039314.01.T01 AT2G28080 22.006 359 231 12 1 324 30 374 1.03e-13 73.9
MsG0780039314.01.T01 AT5G59590 21.245 466 261 18 1 398 22 449 1.28e-13 73.6
MsG0780039314.01.T01 AT4G15480 21.962 469 274 19 1 398 31 478 4.17e-13 72.0
MsG0780039314.01.T01 AT1G05675 25.781 256 124 9 196 395 204 449 5.82e-13 71.2
MsG0780039314.01.T01 AT4G36770 24.800 375 166 16 94 384 103 445 7.36e-13 71.2
MsG0780039314.01.T01 AT2G31790 21.822 472 262 19 1 401 20 455 1.65e-11 67.0
MsG0780039314.01.T01 AT3G46670 21.941 474 254 21 1 401 21 451 4.48e-11 65.5
MsG0780039314.01.T01 AT1G05680 23.352 364 197 15 97 395 103 449 5.19e-11 65.5

Find 101 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCTGCCGCTGCCTATTT+TGG 0.139831 7:+61950377 MsG0780039314.01.T01:CDS
AAATCAGGTCAAAATTTATC+TGG 0.199269 7:+61950713 MsG0780039314.01.T01:intron
TGTTGTAGATTCCATGTTTC+GGG 0.213843 7:-61952952 None:intergenic
TCTGATCAATCTCCTTATTA+AGG 0.222473 7:-61952996 None:intergenic
GAGCAAAAGAACATAATTTA+TGG 0.225380 7:+61951018 MsG0780039314.01.T01:CDS
AAACTTATTTGTTTAGCTTT+AGG 0.251897 7:-61952841 None:intergenic
TCCTCATTTCTTTGCTCTCT+TGG 0.267858 7:-61951115 None:intergenic
GCCACTTCACTTGAAATTCT+TGG 0.268252 7:+61950050 MsG0780039314.01.T01:CDS
GTCTATACTTCATCATTAAA+TGG 0.271841 7:-61950250 None:intergenic
CAACAAGGTTAATGAGAAAA+AGG 0.298342 7:+61950538 MsG0780039314.01.T01:CDS
GGCACCACAGCTGTTGATAT+TGG 0.309956 7:+61950837 MsG0780039314.01.T01:CDS
AGGGCTATATCATATGGAAT+TGG 0.320112 7:+61950815 MsG0780039314.01.T01:CDS
AAGGATGAAAGAAAGCAAAA+AGG 0.321576 7:+61950795 MsG0780039314.01.T01:CDS
CTGTTGTAGATTCCATGTTT+CGG 0.322069 7:-61952953 None:intergenic
ACACAGAAATTTACAATTCC+TGG 0.324450 7:+61950296 MsG0780039314.01.T01:CDS
TCCTGAACCTATCCTTAATA+AGG 0.325700 7:+61952984 MsG0780039314.01.T01:CDS
AGTCTTGCTGTGTCAATCAT+AGG 0.326235 7:-61949855 None:intergenic
GTCACAATCCCTCCGGTTGC+AGG 0.329054 7:-61950865 None:intergenic
GTGATGTAATAATGAATTCT+TGG 0.333100 7:-61950203 None:intergenic
TTGTTATAGAGTCTATTATA+AGG 0.342725 7:+61952801 MsG0780039314.01.T01:CDS
GGATGGCACAGTTGGAGAAT+TGG 0.354123 7:-61950229 None:intergenic
TTCATGCATTGGTCCAAAAT+AGG 0.360513 7:-61950390 None:intergenic
AATAGCCATAACTTCACTTC+CGG 0.361638 7:-61952779 None:intergenic
AACATTAGATGTCAAAAGAT+TGG 0.363045 7:-61952890 None:intergenic
AAACTTAGTAAGACTACAAT+GGG 0.383326 7:+61950476 MsG0780039314.01.T01:CDS
GAAATCATTGAAGAAATCTA+AGG 0.391534 7:+61951229 MsG0780039314.01.T01:CDS
ATAGCCATAACTTCACTTCC+GGG 0.392406 7:-61952778 None:intergenic
AGCAAAAGAACATAATTTAT+GGG 0.402653 7:+61951019 MsG0780039314.01.T01:CDS
TTCTTTGCATGTAACCAATC+AGG 0.407903 7:-61950356 None:intergenic
TTGTTGATCCAAGCTGAAAC+TGG 0.411564 7:-61950521 None:intergenic
TGCAGAGAAAGTGGTGAGAA+GGG 0.417082 7:+61951052 MsG0780039314.01.T01:CDS
TCAAGGAGTAAGGATGCTTC+AGG 0.425756 7:+61950082 MsG0780039314.01.T01:CDS
TAAACCCGGAAGTGAAGTTA+TGG 0.428130 7:+61952774 MsG0780039314.01.T01:CDS
CTACACATGCCAATGCTTCA+AGG 0.435971 7:+61949913 MsG0780039314.01.T01:CDS
CTACAATGGGGATCAAATCT+TGG 0.436907 7:+61950489 MsG0780039314.01.T01:CDS
AAGAGGAAGAATGGCTAGAT+TGG 0.439920 7:+61950591 MsG0780039314.01.T01:CDS
ACCTTCCTCTATAGTCCTCT+TGG 0.448985 7:-61951165 None:intergenic
GGGCTATATCATATGGAATT+GGG 0.452750 7:+61950816 MsG0780039314.01.T01:CDS
TCCTTATTAAGGATAGGTTC+AGG 0.453173 7:-61952985 None:intergenic
TCCTGCAAGAATTTGAGAAA+AGG 0.458681 7:+61950776 MsG0780039314.01.T01:CDS
CTCCTCTGGAAGTTCCTGAT+TGG 0.459643 7:+61950342 MsG0780039314.01.T01:CDS
ATAGACACTGACATCAGTTC+AGG 0.460139 7:+61949948 MsG0780039314.01.T01:CDS
GTAAAATCATTCAAGGAGTA+AGG 0.462825 7:+61950072 MsG0780039314.01.T01:CDS
GAATCAGAGAAAAGAAGTTA+TGG 0.476056 7:+61950410 MsG0780039314.01.T01:CDS
ATGCAGAGAAAGTGGTGAGA+AGG 0.478166 7:+61951051 MsG0780039314.01.T01:CDS
CATAGAGGAACTTGCGAAAG+AGG 0.483596 7:+61950574 MsG0780039314.01.T01:CDS
ATTCTTGGTAAAATCATTCA+AGG 0.484152 7:+61950065 MsG0780039314.01.T01:CDS
CATTAAATGGATGGCACAGT+TGG 0.487293 7:-61950237 None:intergenic
ACCAAGAATTTCAAGTGAAG+TGG 0.491909 7:-61950051 None:intergenic
TACAATTGAGATGACTCCTC+TGG 0.492446 7:+61950328 MsG0780039314.01.T01:CDS
ATATTGGAACACCCTGCAAC+CGG 0.495925 7:+61950853 MsG0780039314.01.T01:CDS
GTGGAAGCAGCTGCAAAACT+AGG 0.504983 7:+61950176 MsG0780039314.01.T01:CDS
AATCAGGTCAAAATTTATCT+GGG 0.509213 7:+61950714 MsG0780039314.01.T01:intron
CAGTTCCCTTCAGCTCAAGT+TGG 0.509931 7:+61949996 MsG0780039314.01.T01:CDS
CGAAACATGGAATCTACAAC+AGG 0.510338 7:+61952954 MsG0780039314.01.T01:CDS
GAGAAGGGAAGAGATAGTTA+AGG 0.514567 7:+61951067 MsG0780039314.01.T01:CDS
ATATCAGAGACTATGCAATC+TGG 0.516846 7:-61950137 None:intergenic
AACTTGCGAAAGAGGAAGAA+TGG 0.527218 7:+61950582 MsG0780039314.01.T01:CDS
AGGATGAGAGCAAAGAAACT+TGG 0.527542 7:+61951134 MsG0780039314.01.T01:CDS
AAATAAACTTTCCCGAAACA+TGG 0.527548 7:+61952941 MsG0780039314.01.T01:CDS
GCAGCTGCTTCCACTGTCCA+CGG 0.535127 7:-61950167 None:intergenic
GGGAGACCAACTTGAGCTGA+AGG 0.537436 7:-61950002 None:intergenic
TAACATTAATGCAGAGAAAG+TGG 0.537539 7:+61951043 MsG0780039314.01.T01:CDS
CAGATAATTCAAACGAGAGA+AGG 0.544171 7:+61953015 MsG0780039314.01.T01:CDS
GTCTTGCTGTGTCAATCATA+GGG 0.544513 7:-61949854 None:intergenic
TCACAATCCCTCCGGTTGCA+GGG 0.545569 7:-61950864 None:intergenic
GGTCCAAAATAGGCAGCGGC+AGG 0.551932 7:-61950380 None:intergenic
ATACTTCATCATTAAATGGA+TGG 0.562120 7:-61950246 None:intergenic
GGGATCAAATCTTGGAGTGT+AGG 0.562776 7:+61950497 MsG0780039314.01.T01:CDS
TCAATTGTATGAGGCAAACC+AGG 0.565982 7:-61950314 None:intergenic
GATAAAGATGAAGATGGAGA+TGG 0.566747 7:+61950751 MsG0780039314.01.T01:CDS
TCAATCTCCTTATTAAGGAT+AGG 0.567234 7:-61952991 None:intergenic
TTGAAGAAATCTAAGGCACT+TGG 0.574510 7:+61951236 MsG0780039314.01.T01:CDS
GGAGTCATCTCAATTGTATG+AGG 0.575171 7:-61950323 None:intergenic
AAAGTTTATTTCATTCCACT+TGG 0.575589 7:-61952929 None:intergenic
CAATTAAGTGTTAATACTCA+CGG 0.578385 7:+61952742 MsG0780039314.01.T01:CDS
GTGTAGGACCAGTTTCAGCT+TGG 0.580002 7:+61950513 MsG0780039314.01.T01:CDS
ACCAAGAGAGCAAAGAAATG+AGG 0.581555 7:+61951114 MsG0780039314.01.T01:CDS
GCTCAAGTTGGTCTCCCTGA+CGG 0.597767 7:+61950008 MsG0780039314.01.T01:CDS
ATTGGCATGTGTAGTGATGA+TGG 0.600742 7:-61949904 None:intergenic
AAAACTTAGTAAGACTACAA+TGG 0.601608 7:+61950475 MsG0780039314.01.T01:CDS
GCAAGACTATTTGCAAAGCA+TGG 0.602004 7:+61949870 MsG0780039314.01.T01:CDS
TGCTGCCAAGAGGACTATAG+AGG 0.613396 7:+61951160 MsG0780039314.01.T01:CDS
ACAATGAGTCACAATCCCTC+CGG 0.620558 7:-61950872 None:intergenic
GGAGACCAACTTGAGCTGAA+GGG 0.621494 7:-61950001 None:intergenic
CATTGGTCCAAAATAGGCAG+CGG 0.626587 7:-61950384 None:intergenic
GCCAAGAGGACTATAGAGGA+AGG 0.631460 7:+61951164 MsG0780039314.01.T01:CDS
AGTTTCAGCTTGGATCAACA+AGG 0.639613 7:+61950523 MsG0780039314.01.T01:CDS
TTGGAACACCCTGCAACCGG+AGG 0.640760 7:+61950856 MsG0780039314.01.T01:CDS
TTGAAGATAGGGATCCCTGT+AGG 0.641117 7:+61950996 MsG0780039314.01.T01:intron
GGAGGGATTGTGACTCATTG+TGG 0.643212 7:+61950874 MsG0780039314.01.T01:CDS
TCAGAAACTAAATTATCATG+AGG 0.644747 7:-61950272 None:intergenic
CAACTAATAGAGTTACCAAG+TGG 0.649484 7:+61952914 MsG0780039314.01.T01:CDS
TGGAACACCCTGCAACCGGA+GGG 0.662971 7:+61950857 MsG0780039314.01.T01:CDS
TGTTCCAATATCAACAGCTG+TGG 0.667359 7:-61950841 None:intergenic
AACTTGGTGATGCTGCCAAG+AGG 0.668809 7:+61951150 MsG0780039314.01.T01:CDS
AACCAATCAGGAACTTCCAG+AGG 0.675298 7:-61950344 None:intergenic
TCTCTGATATGATGTATCCG+TGG 0.682925 7:+61950150 MsG0780039314.01.T01:CDS
AAGAGGACTATAGAGGAAGG+TGG 0.683468 7:+61951167 MsG0780039314.01.T01:CDS
TATGATGTATCCGTGGACAG+TGG 0.722561 7:+61950157 MsG0780039314.01.T01:CDS
AACTTAGTAAGACTACAATG+GGG 0.812594 7:+61950477 MsG0780039314.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAATTATATTTTTTTAA+AGG - Chr7:61952508-61952527 None:intergenic 0.0%
!!! TAAAATTATATTTTTTTAAA+GGG - Chr7:61952507-61952526 None:intergenic 0.0%
!! TAATATTATTATCATTTCAT+TGG + Chr7:61951518-61951537 MsG0780039314.01.T01:intron 10.0%
!!! AAATATAATTTTATCCATAT+TGG + Chr7:61952514-61952533 MsG0780039314.01.T01:intron 10.0%
!!! TTTAATTTATCCAAAATTTT+TGG - Chr7:61952330-61952349 None:intergenic 10.0%
!! AAGTAAAGTATATGTATAAA+TGG + Chr7:61951562-61951581 MsG0780039314.01.T01:intron 15.0%
!! ATAACTTATATAAATTTAGC+CGG - Chr7:61951846-61951865 None:intergenic 15.0%
!! ATTTATACATATACTTTACT+TGG - Chr7:61951563-61951582 None:intergenic 15.0%
!! GTTAAGGATAAATTTAAATT+AGG - Chr7:61952697-61952716 None:intergenic 15.0%
!! TTTATACATATACTTTACTT+GGG - Chr7:61951562-61951581 None:intergenic 15.0%
!! TTTCTTATCTTAATATGAAA+AGG - Chr7:61951451-61951470 None:intergenic 15.0%
!!! AATTGAATATCCAAAAATTT+TGG + Chr7:61952317-61952336 MsG0780039314.01.T01:intron 15.0%
!!! ATCATTCTTTATTTCTTTAA+AGG - Chr7:61951941-61951960 None:intergenic 15.0%
!!! TCAAATAATTTTGATTATCA+TGG - Chr7:61952265-61952284 None:intergenic 15.0%
!!! TTTAAGTTAATGAAAGATTA+TGG + Chr7:61951715-61951734 MsG0780039314.01.T01:intron 15.0%
!!! TTTTGGATAAATTAAACAAA+TGG + Chr7:61952334-61952353 MsG0780039314.01.T01:intron 15.0%
!!! TTTTTGGATATTCAATTTTT+TGG - Chr7:61952314-61952333 None:intergenic 15.0%
!! AAAAATGATAAAGATGAAGA+TGG + Chr7:61950745-61950764 MsG0780039314.01.T01:CDS 20.0%
!! AAAATCATTCTAAACTTCTT+TGG + Chr7:61952044-61952063 MsG0780039314.01.T01:intron 20.0%
!! AGCAAAAGAACATAATTTAT+GGG + Chr7:61951019-61951038 MsG0780039314.01.T01:CDS 20.0%
!! ATTATCAAATACAAGAAGAT+TGG - Chr7:61951816-61951835 None:intergenic 20.0%
!! CAATTTGAATTAATCCAATA+TGG - Chr7:61952531-61952550 None:intergenic 20.0%
!! CATATTGGATTAATTCAAAT+TGG + Chr7:61952529-61952548 MsG0780039314.01.T01:intron 20.0%
!! GGAAAAACATTAAAATAAAC+TGG - Chr7:61952676-61952695 None:intergenic 20.0%
!! GGCTAAATTTATATAAGTTA+TGG + Chr7:61951845-61951864 MsG0780039314.01.T01:intron 20.0%
!! TATCATGATGATAAATGAAA+TGG + Chr7:61952235-61952254 MsG0780039314.01.T01:intron 20.0%
!! TTAAATTATGTTGTCTACTA+TGG + Chr7:61951486-61951505 MsG0780039314.01.T01:intron 20.0%
!! TTGTTATAGAGTCTATTATA+AGG + Chr7:61952801-61952820 MsG0780039314.01.T01:CDS 20.0%
!!! AAACTTATTTGTTTAGCTTT+AGG - Chr7:61952844-61952863 None:intergenic 20.0%
!!! CTTTATTTCTTTAAAGGTAA+AGG - Chr7:61951935-61951954 None:intergenic 20.0%
!!! TATTTTAACATTTGAGAACA+GGG + Chr7:61952130-61952149 MsG0780039314.01.T01:intron 20.0%
!!! TTATTTTAACATTTGAGAAC+AGG + Chr7:61952129-61952148 MsG0780039314.01.T01:intron 20.0%
!!! TTTTCATTTGTTAAGAGAAA+AGG + Chr7:61952473-61952492 MsG0780039314.01.T01:intron 20.0%
! AAAACTTAGTAAGACTACAA+TGG + Chr7:61950475-61950494 MsG0780039314.01.T01:CDS 25.0%
! AAAAGCTGAAGAAAAAAAGA+GGG - Chr7:61951339-61951358 None:intergenic 25.0%
! AAACTTAGTAAGACTACAAT+GGG + Chr7:61950476-61950495 MsG0780039314.01.T01:CDS 25.0%
! AAAGTTTATTTCATTCCACT+TGG - Chr7:61952932-61952951 None:intergenic 25.0%
! AAATCAGGTCAAAATTTATC+TGG + Chr7:61950713-61950732 MsG0780039314.01.T01:intron 25.0%
! AACATTAGATGTCAAAAGAT+TGG - Chr7:61952893-61952912 None:intergenic 25.0%
! AAGACTATATGAGTTAGTTA+TGG + Chr7:61951620-61951639 MsG0780039314.01.T01:intron 25.0%
! AATCAGGTCAAAATTTATCT+GGG + Chr7:61950714-61950733 MsG0780039314.01.T01:intron 25.0%
! AGATTAGATAAGTCAAATGA+AGG + Chr7:61951268-61951287 MsG0780039314.01.T01:intron 25.0%
! ATACTTCATCATTAAATGGA+TGG - Chr7:61950249-61950268 None:intergenic 25.0%
! ATTCTTGGTAAAATCATTCA+AGG + Chr7:61950065-61950084 MsG0780039314.01.T01:CDS 25.0%
! CAATTAAGTGTTAATACTCA+CGG + Chr7:61952742-61952761 MsG0780039314.01.T01:CDS 25.0%
! CTCTTAACAAATGAAAAGTT+TGG - Chr7:61952470-61952489 None:intergenic 25.0%
! GAAATCATTGAAGAAATCTA+AGG + Chr7:61951229-61951248 MsG0780039314.01.T01:CDS 25.0%
! GAGCAAAAGAACATAATTTA+TGG + Chr7:61951018-61951037 MsG0780039314.01.T01:CDS 25.0%
! GTCTATACTTCATCATTAAA+TGG - Chr7:61950253-61950272 None:intergenic 25.0%
! GTGATGTAATAATGAATTCT+TGG - Chr7:61950206-61950225 None:intergenic 25.0%
! TCAGAAACTAAATTATCATG+AGG - Chr7:61950275-61950294 None:intergenic 25.0%
! TTTAAACCTTTAACCTTACT+TGG + Chr7:61952553-61952572 MsG0780039314.01.T01:intron 25.0%
!! AAGAATTGGATGTTGTTTAT+TGG - Chr7:61951381-61951400 None:intergenic 25.0%
!! ATTCTAAACTTCTTTGGTTT+AGG + Chr7:61952050-61952069 MsG0780039314.01.T01:intron 25.0%
!! CAATTAATTGTTTGCTAATG+TGG - Chr7:61951656-61951675 None:intergenic 25.0%
!! GCTAAACAAATAAGTTTTCA+CGG + Chr7:61952847-61952866 MsG0780039314.01.T01:CDS 25.0%
!! GTATTTGATAATATCATGTC+CGG + Chr7:61951824-61951843 MsG0780039314.01.T01:intron 25.0%
!! TCTGTATTGTATGTATGTTT+TGG + Chr7:61950635-61950654 MsG0780039314.01.T01:intron 25.0%
!!! CTCATATAGTCTTGATTTTT+TGG - Chr7:61951613-61951632 None:intergenic 25.0%
!!! GTCTTGATTTTTTGGATTAA+TGG - Chr7:61951605-61951624 None:intergenic 25.0%
!!! TTGTTGATGTTTTGAAGATA+GGG + Chr7:61950985-61951004 MsG0780039314.01.T01:intron 25.0%
AAATAAACTTTCCCGAAACA+TGG + Chr7:61952941-61952960 MsG0780039314.01.T01:CDS 30.0%
AACTTAGTAAGACTACAATG+GGG + Chr7:61950477-61950496 MsG0780039314.01.T01:CDS 30.0%
AAGGATGAAAGAAAGCAAAA+AGG + Chr7:61950795-61950814 MsG0780039314.01.T01:CDS 30.0%
ACACAGAAATTTACAATTCC+TGG + Chr7:61950296-61950315 MsG0780039314.01.T01:CDS 30.0%
ACTTCATGTATAAAGCTCAA+AGG - Chr7:61952190-61952209 None:intergenic 30.0%
AGGATGAAAGAAAGCAAAAA+GGG + Chr7:61950796-61950815 MsG0780039314.01.T01:CDS 30.0%
ATGTAGATGTCTATCTGTTA+AGG - Chr7:61952713-61952732 None:intergenic 30.0%
CAAAAGCTGAAGAAAAAAAG+AGG - Chr7:61951340-61951359 None:intergenic 30.0%
CAACAAGGTTAATGAGAAAA+AGG + Chr7:61950538-61950557 MsG0780039314.01.T01:CDS 30.0%
CCTAAGCAAATTTATAGCTT+TGG + Chr7:61952375-61952394 MsG0780039314.01.T01:intron 30.0%
GAATCAGAGAAAAGAAGTTA+TGG + Chr7:61950410-61950429 MsG0780039314.01.T01:CDS 30.0%
GCAACTTCTCATTGTAAAAT+TGG - Chr7:61950965-61950984 None:intergenic 30.0%
GTAAAATCATTCAAGGAGTA+AGG + Chr7:61950072-61950091 MsG0780039314.01.T01:CDS 30.0%
TAACATTAATGCAGAGAAAG+TGG + Chr7:61951043-61951062 MsG0780039314.01.T01:CDS 30.0%
TCAATCTCCTTATTAAGGAT+AGG - Chr7:61952994-61953013 None:intergenic 30.0%
TCACAATTCACAATCAATTC+AGG + Chr7:61951686-61951705 MsG0780039314.01.T01:intron 30.0%
TCTGATCAATCTCCTTATTA+AGG - Chr7:61952999-61953018 None:intergenic 30.0%
TTAATGAGAAAAAGGCCAAT+GGG + Chr7:61950546-61950565 MsG0780039314.01.T01:CDS 30.0%
TTTGAACCAAGTAAGGTTAA+AGG - Chr7:61952562-61952581 None:intergenic 30.0%
! AAGCTATAAATTTGCTTAGG+AGG - Chr7:61952375-61952394 None:intergenic 30.0%
! ACTATTGAAAGCATAAATGC+TGG + Chr7:61950907-61950926 MsG0780039314.01.T01:intron 30.0%
! ATACAACAGTTTTCATGAAC+TGG + Chr7:61950439-61950458 MsG0780039314.01.T01:CDS 30.0%
! CCAAAGCTATAAATTTGCTT+AGG - Chr7:61952378-61952397 None:intergenic 30.0%
!! ATTGAAACTAGTCTTTGTCA+TGG + Chr7:61952649-61952668 MsG0780039314.01.T01:intron 30.0%
!! CTAAAATCATCATTTTTCCC+AGG + Chr7:61951977-61951996 MsG0780039314.01.T01:intron 30.0%
!! CTGAATAAGTTGAGTTTTGA+TGG - Chr7:61949979-61949998 None:intergenic 30.0%
!!! CTTGTTGATGTTTTGAAGAT+AGG + Chr7:61950984-61951003 MsG0780039314.01.T01:intron 30.0%
!!! TGTCAGTGTCTATTGATTTT+TGG - Chr7:61949941-61949960 None:intergenic 30.0%
AACTTGTAGAAATTGCGCAT+GGG + Chr7:61950684-61950703 MsG0780039314.01.T01:intron 35.0%
AATAGCCATAACTTCACTTC+CGG - Chr7:61952782-61952801 None:intergenic 35.0%
AGGGCTATATCATATGGAAT+TGG + Chr7:61950815-61950834 MsG0780039314.01.T01:CDS 35.0%
ATATCAGAGACTATGCAATC+TGG - Chr7:61950140-61950159 None:intergenic 35.0%
ATCTCTACCATCTCTAACAT+AGG - Chr7:61952599-61952618 None:intergenic 35.0%
ATTTGCTTAGGAGGAACAAA+TGG - Chr7:61952366-61952385 None:intergenic 35.0%
CAACTAATAGAGTTACCAAG+TGG + Chr7:61952914-61952933 MsG0780039314.01.T01:CDS 35.0%
CAGATAATTCAAACGAGAGA+AGG + Chr7:61953015-61953034 MsG0780039314.01.T01:CDS 35.0%
CTGTTGTAGATTCCATGTTT+CGG - Chr7:61952956-61952975 None:intergenic 35.0%
GATAAAGATGAAGATGGAGA+TGG + Chr7:61950751-61950770 MsG0780039314.01.T01:CDS 35.0%
GATACCATTTGGTTGCATAT+TGG - Chr7:61951908-61951927 None:intergenic 35.0%
GCAAAAAGGGCTATATCATA+TGG + Chr7:61950809-61950828 MsG0780039314.01.T01:CDS 35.0%
GGAGTAATGTTTGATGCTTT+AGG + Chr7:61951289-61951308 MsG0780039314.01.T01:intron 35.0%
GGGCTATATCATATGGAATT+GGG + Chr7:61950816-61950835 MsG0780039314.01.T01:CDS 35.0%
GGTAAAGCATATTATGAAGC+TGG + Chr7:61951765-61951784 MsG0780039314.01.T01:intron 35.0%
GTTAATGAGAAAAAGGCCAA+TGG + Chr7:61950545-61950564 MsG0780039314.01.T01:CDS 35.0%
TAAAATTGGTCAGCAAACAC+CGG - Chr7:61950951-61950970 None:intergenic 35.0%
TAATGAGAAAAAGGCCAATG+GGG + Chr7:61950547-61950566 MsG0780039314.01.T01:CDS 35.0%
TCCTGAACCTATCCTTAATA+AGG + Chr7:61952984-61953003 MsG0780039314.01.T01:CDS 35.0%
TCCTGCAAGAATTTGAGAAA+AGG + Chr7:61950776-61950795 MsG0780039314.01.T01:CDS 35.0%
TCCTTATTAAGGATAGGTTC+AGG - Chr7:61952988-61953007 None:intergenic 35.0%
TGTTGTAGATTCCATGTTTC+GGG - Chr7:61952955-61952974 None:intergenic 35.0%
TGTTTGACTATCAACTCGAA+GGG - Chr7:61952090-61952109 None:intergenic 35.0%
TTCAATTATAGCAGCTAGAG+AGG - Chr7:61952635-61952654 None:intergenic 35.0%
TTCTTTGCATGTAACCAATC+AGG - Chr7:61950359-61950378 None:intergenic 35.0%
TTTGCCAATATGCAACCAAA+TGG + Chr7:61951901-61951920 MsG0780039314.01.T01:intron 35.0%
! ACCAAGAATTTCAAGTGAAG+TGG - Chr7:61950054-61950073 None:intergenic 35.0%
! ATTTCTACAAGTTGAGCATG+AGG - Chr7:61950677-61950696 None:intergenic 35.0%
! CACGGCTATAATTTTAAACC+CGG + Chr7:61952760-61952779 MsG0780039314.01.T01:CDS 35.0%
! CTTTTCTCTGATTCATGCAT+TGG - Chr7:61950404-61950423 None:intergenic 35.0%
! TAAGGCTGTGAAGATTTTGA+TGG + Chr7:61951085-61951104 MsG0780039314.01.T01:CDS 35.0%
! TATGTTCTTTTGCTCCTACA+GGG - Chr7:61951013-61951032 None:intergenic 35.0%
! TCCTTTTCTCAAATTCTTGC+AGG - Chr7:61950780-61950799 None:intergenic 35.0%
! TTATGTTCTTTTGCTCCTAC+AGG - Chr7:61951014-61951033 None:intergenic 35.0%
! TTCATGCATTGGTCCAAAAT+AGG - Chr7:61950393-61950412 None:intergenic 35.0%
! TTGAAGAAATCTAAGGCACT+TGG + Chr7:61951236-61951255 MsG0780039314.01.T01:CDS 35.0%
!! AAATCATCATTTTTCCCAGG+AGG + Chr7:61951980-61951999 MsG0780039314.01.T01:intron 35.0%
!! AAGGCTGTGAAGATTTTGAT+GGG + Chr7:61951086-61951105 MsG0780039314.01.T01:CDS 35.0%
!! AATCATCATTTTTCCCAGGA+GGG + Chr7:61951981-61952000 MsG0780039314.01.T01:intron 35.0%
!!! TTTTTGGAACCTTGAAGCAT+TGG - Chr7:61949925-61949944 None:intergenic 35.0%
AACTTGCGAAAGAGGAAGAA+TGG + Chr7:61950582-61950601 MsG0780039314.01.T01:CDS 40.0%
AAGAGGAAGAATGGCTAGAT+TGG + Chr7:61950591-61950610 MsG0780039314.01.T01:CDS 40.0%
AATGAGAAAAAGGCCAATGG+GGG + Chr7:61950548-61950567 MsG0780039314.01.T01:CDS 40.0%
AATTCTTGTGCATTGCAACG+AGG + Chr7:61951394-61951413 MsG0780039314.01.T01:intron 40.0%
ACCAAGAGAGCAAAGAAATG+AGG + Chr7:61951114-61951133 MsG0780039314.01.T01:CDS 40.0%
AGGATGAGAGCAAAGAAACT+TGG + Chr7:61951134-61951153 MsG0780039314.01.T01:CDS 40.0%
AGTTTCAGCTTGGATCAACA+AGG + Chr7:61950523-61950542 MsG0780039314.01.T01:CDS 40.0%
ATAGACACTGACATCAGTTC+AGG + Chr7:61949948-61949967 MsG0780039314.01.T01:CDS 40.0%
ATAGCCATAACTTCACTTCC+GGG - Chr7:61952781-61952800 None:intergenic 40.0%
ATGGCTCCACTCAAGAAAAA+TGG + Chr7:61951734-61951753 MsG0780039314.01.T01:intron 40.0%
ATTGGCATGTGTAGTGATGA+TGG - Chr7:61949907-61949926 None:intergenic 40.0%
CAACTTGTAGAAATTGCGCA+TGG + Chr7:61950683-61950702 MsG0780039314.01.T01:intron 40.0%
CATCTCTAACATAGGCCATA+AGG - Chr7:61952591-61952610 None:intergenic 40.0%
CATCTTAATAACTCCCTCCT+GGG - Chr7:61951997-61952016 None:intergenic 40.0%
CATTAAATGGATGGCACAGT+TGG - Chr7:61950240-61950259 None:intergenic 40.0%
CGAAACATGGAATCTACAAC+AGG + Chr7:61952954-61952973 MsG0780039314.01.T01:CDS 40.0%
CTACAATGGGGATCAAATCT+TGG + Chr7:61950489-61950508 MsG0780039314.01.T01:CDS 40.0%
CTTATGGCCTATGTTAGAGA+TGG + Chr7:61952589-61952608 MsG0780039314.01.T01:intron 40.0%
GAGAAGGGAAGAGATAGTTA+AGG + Chr7:61951067-61951086 MsG0780039314.01.T01:CDS 40.0%
GCAAGACTATTTGCAAAGCA+TGG + Chr7:61949870-61949889 MsG0780039314.01.T01:CDS 40.0%
GCCACTTCACTTGAAATTCT+TGG + Chr7:61950050-61950069 MsG0780039314.01.T01:CDS 40.0%
GCTGGAATTTGAACCAAGTA+AGG - Chr7:61952569-61952588 None:intergenic 40.0%
GGAGTCATCTCAATTGTATG+AGG - Chr7:61950326-61950345 None:intergenic 40.0%
GTGTTTGACTATCAACTCGA+AGG - Chr7:61952091-61952110 None:intergenic 40.0%
TAAACCCGGAAGTGAAGTTA+TGG + Chr7:61952774-61952793 MsG0780039314.01.T01:CDS 40.0%
TACAATTGAGATGACTCCTC+TGG + Chr7:61950328-61950347 MsG0780039314.01.T01:CDS 40.0%
TATCAACTCGAAGGGATAGA+AGG - Chr7:61952082-61952101 None:intergenic 40.0%
TCAATTGTATGAGGCAAACC+AGG - Chr7:61950317-61950336 None:intergenic 40.0%
TCATCTTAATAACTCCCTCC+TGG - Chr7:61951998-61952017 None:intergenic 40.0%
TCCTCATTTCTTTGCTCTCT+TGG - Chr7:61951118-61951137 None:intergenic 40.0%
TCGTTGCAATGCACAAGAAT+TGG - Chr7:61951395-61951414 None:intergenic 40.0%
TCTCTGATATGATGTATCCG+TGG + Chr7:61950150-61950169 MsG0780039314.01.T01:CDS 40.0%
TGGCTCCACTCAAGAAAAAT+GGG + Chr7:61951735-61951754 MsG0780039314.01.T01:intron 40.0%
TGGTTCAAATTCCAGCCTTA+TGG + Chr7:61952573-61952592 MsG0780039314.01.T01:intron 40.0%
TGTTCCAATATCAACAGCTG+TGG - Chr7:61950844-61950863 None:intergenic 40.0%
TTGTTGATCCAAGCTGAAAC+TGG - Chr7:61950524-61950543 None:intergenic 40.0%
! AGTCTTGCTGTGTCAATCAT+AGG - Chr7:61949858-61949877 None:intergenic 40.0%
! GTAAAGGCTCTGATACCATT+TGG - Chr7:61951919-61951938 None:intergenic 40.0%
! GTCTTGCTGTGTCAATCATA+GGG - Chr7:61949857-61949876 None:intergenic 40.0%
! TCGTGTTTTCAATACCGTCA+GGG - Chr7:61950025-61950044 None:intergenic 40.0%
! TTCGTGTTTTCAATACCGTC+AGG - Chr7:61950026-61950045 None:intergenic 40.0%
!!! TATGTTTTGGCAGCCATACT+AGG + Chr7:61950648-61950667 MsG0780039314.01.T01:intron 40.0%
AACCAATCAGGAACTTCCAG+AGG - Chr7:61950347-61950366 None:intergenic 45.0%
AAGAGGACTATAGAGGAAGG+TGG + Chr7:61951167-61951186 MsG0780039314.01.T01:CDS 45.0%
ACAATGAGTCACAATCCCTC+CGG - Chr7:61950875-61950894 None:intergenic 45.0%
ACCTTCCTCTATAGTCCTCT+TGG - Chr7:61951168-61951187 None:intergenic 45.0%
ATATTGGAACACCCTGCAAC+CGG + Chr7:61950853-61950872 MsG0780039314.01.T01:CDS 45.0%
ATGCAGAGAAAGTGGTGAGA+AGG + Chr7:61951051-61951070 MsG0780039314.01.T01:CDS 45.0%
CATAGAGGAACTTGCGAAAG+AGG + Chr7:61950574-61950593 MsG0780039314.01.T01:CDS 45.0%
CATTGGTCCAAAATAGGCAG+CGG - Chr7:61950387-61950406 None:intergenic 45.0%
CTACACATGCCAATGCTTCA+AGG + Chr7:61949913-61949932 MsG0780039314.01.T01:CDS 45.0%
GAGCATGAGGAAACCTAGTA+TGG - Chr7:61950664-61950683 None:intergenic 45.0%
GGATTGTGACTCATTGTGGT+TGG + Chr7:61950878-61950897 MsG0780039314.01.T01:intron 45.0%
GGGATCAAATCTTGGAGTGT+AGG + Chr7:61950497-61950516 MsG0780039314.01.T01:CDS 45.0%
GTGCATTGCAACGAGGATAA+AGG + Chr7:61951401-61951420 MsG0780039314.01.T01:intron 45.0%
TATGATGTATCCGTGGACAG+TGG + Chr7:61950157-61950176 MsG0780039314.01.T01:CDS 45.0%
TCAAGAAAAATGGGCGAGCA+TGG + Chr7:61951744-61951763 MsG0780039314.01.T01:intron 45.0%
TCAAGGAGTAAGGATGCTTC+AGG + Chr7:61950082-61950101 MsG0780039314.01.T01:CDS 45.0%
TCTAACATAGGCCATAAGGC+TGG - Chr7:61952587-61952606 None:intergenic 45.0%
TGCAGAGAAAGTGGTGAGAA+GGG + Chr7:61951052-61951071 MsG0780039314.01.T01:CDS 45.0%
TTGAAGATAGGGATCCCTGT+AGG + Chr7:61950996-61951015 MsG0780039314.01.T01:intron 45.0%
AACACCGGCCACGTAATCAT+TGG - Chr7:61950936-61950955 None:intergenic 50.0%
CAGTTCCCTTCAGCTCAAGT+TGG + Chr7:61949996-61950015 MsG0780039314.01.T01:CDS 50.0%
GCCAAGAGGACTATAGAGGA+AGG + Chr7:61951164-61951183 MsG0780039314.01.T01:CDS 50.0%
GCGCATGGGCTTGAAAAATC+AGG + Chr7:61950698-61950717 MsG0780039314.01.T01:intron 50.0%
GCTGGTTGCCAATGATTACG+TGG + Chr7:61950925-61950944 MsG0780039314.01.T01:intron 50.0%
GGAGACCAACTTGAGCTGAA+GGG - Chr7:61950004-61950023 None:intergenic 50.0%
GGAGGGATTGTGACTCATTG+TGG + Chr7:61950874-61950893 MsG0780039314.01.T01:CDS 50.0%
GGATGGCACAGTTGGAGAAT+TGG - Chr7:61950232-61950251 None:intergenic 50.0%
GGCACCACAGCTGTTGATAT+TGG + Chr7:61950837-61950856 MsG0780039314.01.T01:CDS 50.0%
GTGGAAGCAGCTGCAAAACT+AGG + Chr7:61950176-61950195 MsG0780039314.01.T01:CDS 50.0%
GTGTAGGACCAGTTTCAGCT+TGG + Chr7:61950513-61950532 MsG0780039314.01.T01:CDS 50.0%
GTTGCCAATGATTACGTGGC+CGG + Chr7:61950929-61950948 MsG0780039314.01.T01:intron 50.0%
TGCTGCCAAGAGGACTATAG+AGG + Chr7:61951160-61951179 MsG0780039314.01.T01:CDS 50.0%
TTCCTCTATGTGTCCCCCAT+TGG - Chr7:61950564-61950583 None:intergenic 50.0%
! AATCCTGCCGCTGCCTATTT+TGG + Chr7:61950377-61950396 MsG0780039314.01.T01:CDS 50.0%
! CTCCTCTGGAAGTTCCTGAT+TGG + Chr7:61950342-61950361 MsG0780039314.01.T01:CDS 50.0%
!! AACTTGGTGATGCTGCCAAG+AGG + Chr7:61951150-61951169 MsG0780039314.01.T01:CDS 50.0%
!! GCTCGCCCATTTTTCTTGAG+TGG - Chr7:61951743-61951762 None:intergenic 50.0%
GGGAGACCAACTTGAGCTGA+AGG - Chr7:61950005-61950024 None:intergenic 55.0%
TCACAATCCCTCCGGTTGCA+GGG - Chr7:61950867-61950886 None:intergenic 55.0%
!! GCTCAAGTTGGTCTCCCTGA+CGG + Chr7:61950008-61950027 MsG0780039314.01.T01:CDS 55.0%
GCAGCTGCTTCCACTGTCCA+CGG - Chr7:61950170-61950189 None:intergenic 60.0%
GGCCAATGGGGGACACATAG+AGG + Chr7:61950559-61950578 MsG0780039314.01.T01:CDS 60.0%
GGTCCAAAATAGGCAGCGGC+AGG - Chr7:61950383-61950402 None:intergenic 60.0%
GTCACAATCCCTCCGGTTGC+AGG - Chr7:61950868-61950887 None:intergenic 60.0%
TGGAACACCCTGCAACCGGA+GGG + Chr7:61950857-61950876 MsG0780039314.01.T01:CDS 60.0%
TTGGAACACCCTGCAACCGG+AGG + Chr7:61950856-61950875 MsG0780039314.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 61949849 61953077 61949849 ID=MsG0780039314.01;Name=MsG0780039314.01
Chr7 mRNA 61949849 61953077 61949849 ID=MsG0780039314.01.T01;Parent=MsG0780039314.01;Name=MsG0780039314.01.T01;_AED=0.49;_eAED=0.61;_QI=0|0|0|1|1|1|4|0|526
Chr7 exon 61949849 61950642 61949849 ID=MsG0780039314.01.T01:exon:16315;Parent=MsG0780039314.01.T01
Chr7 exon 61950720 61950895 61950720 ID=MsG0780039314.01.T01:exon:16314;Parent=MsG0780039314.01.T01
Chr7 exon 61951006 61951257 61951006 ID=MsG0780039314.01.T01:exon:16313;Parent=MsG0780039314.01.T01
Chr7 exon 61952719 61953077 61952719 ID=MsG0780039314.01.T01:exon:16312;Parent=MsG0780039314.01.T01
Chr7 CDS 61949849 61950642 61949849 ID=MsG0780039314.01.T01:cds;Parent=MsG0780039314.01.T01
Chr7 CDS 61950720 61950895 61950720 ID=MsG0780039314.01.T01:cds;Parent=MsG0780039314.01.T01
Chr7 CDS 61951006 61951257 61951006 ID=MsG0780039314.01.T01:cds;Parent=MsG0780039314.01.T01
Chr7 CDS 61952719 61953077 61952719 ID=MsG0780039314.01.T01:cds;Parent=MsG0780039314.01.T01
Gene Sequence

>MsG0780039314.01.T01

ATGAACCCTATGATTGACACAGCAAGACTATTTGCAAAGCATGGTGTTAATGTTACCATCATCACTACACATGCCAATGCTTCAAGGTTCCAAAAATCAATAGACACTGACATCAGTTCAGGATACTCCATCAAAACTCAACTTATTCAGTTCCCTTCAGCTCAAGTTGGTCTCCCTGACGGTATTGAAAACACGAACGATGCCACTTCACTTGAAATTCTTGGTAAAATCATTCAAGGAGTAAGGATGCTTCAGGAATCTATTGAAGTTCTGTTAAAAGAAGTTCAACCAGATTGCATAGTCTCTGATATGATGTATCCGTGGACAGTGGAAGCAGCTGCAAAACTAGGTATTCCAAGAATTCATTATTACATCACAAGCCAATTCTCCAACTGTGCCATCCATTTAATGATGAAGTATAGACCTCATGATAATTTAGTTTCTGATACACAGAAATTTACAATTCCTGGTTTGCCTCATACAATTGAGATGACTCCTCTGGAAGTTCCTGATTGGTTACATGCAAAGAATCCTGCCGCTGCCTATTTTGGACCAATGCATGAATCAGAGAAAAGAAGTTATGGAACACTATACAACAGTTTTCATGAACTGGAAAGTGATTATGAAAAACTTAGTAAGACTACAATGGGGATCAAATCTTGGAGTGTAGGACCAGTTTCAGCTTGGATCAACAAGGTTAATGAGAAAAAGGCCAATGGGGGACACATAGAGGAACTTGCGAAAGAGGAAGAATGGCTAGATTGGCTTAACTCAAAGCAAAATGAGTCTGTATTGTCAAAATTTATCTGGGTTGTAAAAAAAAATGATAAAGATGAAGATGGAGATGGTTTCCTGCAAGAATTTGAGAAAAGGATGAAAGAAAGCAAAAAGGGCTATATCATATGGAATTGGGCACCACAGCTGTTGATATTGGAACACCCTGCAACCGGAGGGATTGTGACTCATTGTGGGATCCCTGTAGGAGCAAAAGAACATAATTTATGGGCTAACATTAATGCAGAGAAAGTGGTGAGAAGGGAAGAGATAGTTAAGGCTGTGAAGATTTTGATGGGAAGCGACCAAGAGAGCAAAGAAATGAGGATGAGAGCAAAGAAACTTGGTGATGCTGCCAAGAGGACTATAGAGGAAGGTGGTGATTCTTACAACAACTTGATTCAGTTGATTGATGAGCTGAAATCATTGAAGAAATCTAAGGCACTTGATAGACATCTACATGATGCTATGCAATTAAGTGTTAATACTCACGGCTATAATTTTAAACCCGGAAGTGAAGTTATGGCTATTTGTTATAGAGTCTATTATAAGGTTCTTAATACTTTAAATCCTAAAGCTAAACAAATAAGTTTTCACGGAACAACAACATTAGTTCAAACCAATCTTTTGACATCTAATGTTGCAACTAATAGAGTTACCAAGTGGAATGAAATAAACTTTCCCGAAACATGGAATCTACAACAGGAAATAGATCCTGAACCTATCCTTAATAAGGAGATTGATCAGATAATTCAAACGAGAGAAGGAGATATAGAAGTCAAATTTACTTCTCAAAGAAAGCTTTAA
Protein sequence

>MsG0780039314.01.T01

MNPMIDTARLFAKHGVNVTIITTHANASRFQKSIDTDISSGYSIKTQLIQFPSAQVGLPDGIENTNDATSLEILGKIIQGVRMLQESIEVLLKEVQPDCIVSDMMYPWTVEAAAKLGIPRIHYYITSQFSNCAIHLMMKYRPHDNLVSDTQKFTIPGLPHTIEMTPLEVPDWLHAKNPAAAYFGPMHESEKRSYGTLYNSFHELESDYEKLSKTTMGIKSWSVGPVSAWINKVNEKKANGGHIEELAKEEEWLDWLNSKQNESVLSKFIWVVKKNDKDEDGDGFLQEFEKRMKESKKGYIIWNWAPQLLILEHPATGGIVTHCGIPVGAKEHNLWANINAEKVVRREEIVKAVKILMGSDQESKEMRMRAKKLGDAAKRTIEEGGDSYNNLIQLIDELKSLKKSKALDRHLHDAMQLSVNTHGYNFKPGSEVMAICYRVYYKVLNTLNPKAKQISFHGTTTLVQTNLLTSNVATNRVTKWNEINFPETWNLQQEIDPEPILNKEIDQIIQTREGDIEVKFTSQRKL*