Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009171.01.T01 | XP_013443468.2 | 84.536 | 194 | 24 | 3 | 1 | 192 | 1 | 190 | 2.24E-100 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009171.01.T01 | A0A396J7S7 | 84.536 | 194 | 24 | 3 | 1 | 192 | 1 | 190 | 1.07e-100 | 305 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048776.01 | MsG0280009171.01 | 0.800132 | 1.663432e-48 | 7.685553e-46 |
| MsG0080049016.01 | MsG0280009171.01 | 0.805154 | 1.530564e-49 | 8.038778e-47 |
| MsG0180003451.01 | MsG0280009171.01 | 0.809082 | 2.255165e-50 | 1.311567e-47 |
| MsG0180005806.01 | MsG0280009171.01 | 0.838536 | 2.713773e-57 | 3.645603e-54 |
| MsG0180005969.01 | MsG0280009171.01 | 0.814097 | 1.832598e-51 | 1.218317e-48 |
| MsG0280006451.01 | MsG0280009171.01 | 0.831429 | 1.677871e-55 | 1.820199e-52 |
| MsG0280006989.01 | MsG0280009171.01 | 0.807033 | 6.159314e-50 | 3.394719e-47 |
| MsG0280007755.01 | MsG0280009171.01 | 0.803083 | 4.128048e-49 | 2.055525e-46 |
| MsG0280008233.01 | MsG0280009171.01 | 0.847356 | 1.218294e-59 | 2.159615e-56 |
| MsG0280008638.01 | MsG0280009171.01 | 0.821350 | 4.230385e-53 | 3.433260e-50 |
| MsG0280009171.01 | MsG0280010899.01 | 0.834644 | 2.660338e-56 | 3.176481e-53 |
| MsG0280009171.01 | MsG0280010905.01 | 0.805610 | 1.228552e-49 | 6.528372e-47 |
| MsG0280009171.01 | MsG0280011273.01 | 0.826238 | 3.027676e-54 | 2.823266e-51 |
| MsG0280009171.01 | MsG0380014411.01 | 0.809691 | 1.669637e-50 | 9.869281e-48 |
| MsG0280009171.01 | MsG0380015501.01 | 0.820349 | 7.189393e-53 | 5.674630e-50 |
| MsG0280009171.01 | MsG0380015883.01 | 0.809713 | 1.651661e-50 | 9.768785e-48 |
| MsG0280009171.01 | MsG0380017056.01 | 0.818687 | 1.721443e-52 | 1.297398e-49 |
| MsG0280009171.01 | MsG0380017870.01 | 0.803976 | 2.695258e-49 | 1.373357e-46 |
| MsG0280009171.01 | MsG0480018232.01 | 0.816508 | 5.332674e-52 | 3.785807e-49 |
| MsG0280009171.01 | MsG0480018324.01 | 0.818113 | 2.322115e-52 | 1.722640e-49 |
| MsG0280009171.01 | MsG0480019693.01 | 0.827073 | 1.913268e-54 | 1.827492e-51 |
| MsG0280009171.01 | MsG0480021316.01 | 0.832719 | 8.050418e-56 | 9.074321e-53 |
| MsG0280009171.01 | MsG0480021893.01 | 0.807321 | 5.352505e-50 | 2.972265e-47 |
| MsG0280009171.01 | MsG0480023752.01 | 0.830484 | 2.861582e-55 | 3.018797e-52 |
| MsG0280009171.01 | MsG0580024665.01 | 0.905019 | 6.676610e-80 | 1.059758e-75 |
| MsG0280009171.01 | MsG0580024666.01 | 0.895589 | 8.300663e-76 | 8.669031e-72 |
| MsG0280009171.01 | MsG0580024667.01 | 0.803765 | 2.981562e-49 | 1.510968e-46 |
| MsG0280009171.01 | MsG0580024673.01 | 0.887428 | 1.439440e-72 | 1.070178e-68 |
| MsG0280009171.01 | MsG0580024820.01 | 0.806575 | 7.695112e-50 | 4.191305e-47 |
| MsG0280009171.01 | MsG0580025505.01 | 0.843701 | 1.191765e-58 | 1.880060e-55 |
| MsG0280009171.01 | MsG0580026144.01 | 0.800927 | 1.145209e-48 | 5.399190e-46 |
| MsG0280009171.01 | MsG0580027410.01 | 0.815672 | 8.200789e-52 | 5.690572e-49 |
| MsG0280009171.01 | MsG0580028285.01 | 0.801536 | 8.597265e-49 | 4.115907e-46 |
| MsG0280009171.01 | MsG0580028310.01 | 0.857841 | 1.239611e-62 | 3.101286e-59 |
| MsG0280009171.01 | MsG0680030879.01 | 0.810248 | 1.266714e-50 | 7.597538e-48 |
| MsG0280009171.01 | MsG0680032683.01 | 0.827480 | 1.528231e-54 | 1.477219e-51 |
| MsG0280009171.01 | MsG0680035322.01 | 0.814877 | 1.231691e-51 | 8.362561e-49 |
| MsG0280009171.01 | MsG0780036584.01 | 0.815074 | 1.113534e-51 | 7.600952e-49 |
| MsG0280009171.01 | MsG0780038334.01 | 0.832526 | 8.990879e-56 | 1.007531e-52 |
| MsG0280009171.01 | MsG0780038337.01 | 0.852616 | 4.108094e-61 | 8.633141e-58 |
| MsG0280009171.01 | MsG0780038341.01 | 0.822165 | 2.741411e-53 | 2.276656e-50 |
| MsG0280009171.01 | MsG0780039179.01 | 0.820930 | 5.286802e-53 | 4.240962e-50 |
| MsG0280009171.01 | MsG0780039314.01 | 0.804924 | 1.710465e-49 | 8.931196e-47 |
| MsG0280009171.01 | MsG0780039339.01 | 0.828244 | 1.001509e-54 | 9.898271e-52 |
| MsG0280009171.01 | MsG0780039508.01 | 0.803966 | 2.708089e-49 | 1.379506e-46 |
| MsG0280009171.01 | MsG0780040080.01 | 0.818897 | 1.541981e-52 | 1.169039e-49 |
| MsG0280009171.01 | MsG0780041092.01 | 0.808519 | 2.975675e-50 | 1.705063e-47 |
| MsG0280009171.01 | MsG0780041617.01 | 0.808503 | 3.000113e-50 | 1.718330e-47 |
| MsG0280009171.01 | MsG0780041640.01 | 0.881016 | 3.407293e-70 | 1.963659e-66 |
| MsG0280009171.01 | MsG0880042921.01 | 0.806847 | 6.741374e-50 | 3.697812e-47 |
| MsG0280009171.01 | MsG0880043913.01 | 0.808683 | 2.745638e-50 | 1.579894e-47 |
| MsG0280009171.01 | MsG0880045259.01 | 0.801497 | 8.757918e-49 | 4.188742e-46 |
| MsG0280009171.01 | MsG0880045772.01 | 0.802165 | 6.384889e-49 | 3.105976e-46 |
| MsG0280009171.01 | MsG0880045923.01 | 0.826236 | 3.029781e-54 | 2.825125e-51 |
| MsG0280009171.01 | MsG0880046347.01 | 0.819455 | 1.151216e-52 | 8.863409e-50 |
| MsG0280009171.01 | MsG0880046639.01 | 0.802950 | 4.398184e-49 | 2.182689e-46 |
| MsG0280009171.01 | MsG0880046986.01 | 0.819294 | 1.252764e-52 | 9.601084e-50 |
| MsG0280009171.01 | MsG0880047161.01 | 0.813588 | 2.372595e-51 | 1.555744e-48 |
| MsG0280009171.01 | MsG0880047605.01 | 0.824191 | 9.227920e-54 | 8.116307e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009171.01.T01 | MTR_0011s0260 | 81.818 | 198 | 26 | 5 | 1 | 192 | 1 | 194 | 4.94e-90 | 268 |
| MsG0280009171.01.T01 | MTR_0011s0210 | 81.818 | 198 | 26 | 5 | 1 | 192 | 1 | 194 | 1.36e-89 | 267 |
| MsG0280009171.01.T01 | MTR_6g047550 | 64.141 | 198 | 51 | 4 | 1 | 192 | 1 | 184 | 1.77e-76 | 231 |
| MsG0280009171.01.T01 | MTR_6g047570 | 63.776 | 196 | 41 | 6 | 1 | 192 | 1 | 170 | 1.75e-71 | 220 |
| MsG0280009171.01.T01 | MTR_0246s0020 | 50.230 | 217 | 75 | 8 | 1 | 192 | 1 | 209 | 5.32e-51 | 169 |
| MsG0280009171.01.T01 | MTR_0246s0020 | 50.230 | 217 | 75 | 8 | 1 | 192 | 1 | 209 | 7.58e-51 | 169 |
| MsG0280009171.01.T01 | MTR_4g066380 | 50.481 | 208 | 43 | 6 | 1 | 192 | 1 | 164 | 2.88e-50 | 166 |
| MsG0280009171.01.T01 | MTR_4g067010 | 54.872 | 195 | 48 | 7 | 1 | 192 | 1 | 158 | 5.09e-50 | 165 |
| MsG0280009171.01.T01 | MTR_4g066460 | 51.196 | 209 | 42 | 9 | 1 | 192 | 1 | 166 | 1.63e-44 | 150 |
| MsG0280009171.01.T01 | MTR_4g098035 | 43.564 | 202 | 85 | 9 | 1 | 192 | 1 | 183 | 1.14e-33 | 123 |
| MsG0280009171.01.T01 | MTR_0246s0050 | 41.243 | 177 | 76 | 8 | 25 | 192 | 5 | 162 | 3.68e-25 | 100 |
| MsG0280009171.01.T01 | MTR_0250s0040 | 34.659 | 176 | 33 | 5 | 22 | 192 | 1 | 99 | 1.81e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTAGTAGTAGGTGAATT+TGG | 0.205689 | 2:+46826903 | None:intergenic |
| CAGCAGCTGGTTATCTGATT+TGG | 0.298434 | 2:-46828626 | MsG0280009171.01.T01:intron |
| CGATATTGATAAGACAATTA+TGG | 0.305371 | 2:-46827024 | MsG0280009171.01.T01:CDS |
| TTCAGTGTCTCCAACTGAAT+TGG | 0.327767 | 2:-46826826 | MsG0280009171.01.T01:CDS |
| CACCAGTATCAAGGAAATTC+AGG | 0.328339 | 2:+46827183 | None:intergenic |
| CTGCAAGAGCAATGAAGCTT+TGG | 0.357341 | 2:+46826698 | None:intergenic |
| AAACAACAATGTTTAACTTC+GGG | 0.367096 | 2:-46827110 | MsG0280009171.01.T01:CDS |
| AAGTGTTACTGTTGAGACTA+TGG | 0.367734 | 2:-46828686 | MsG0280009171.01.T01:exon |
| AACCTGAATTTCCTTGATAC+TGG | 0.413104 | 2:-46827185 | MsG0280009171.01.T01:CDS |
| AAAAGGTCTCGTGCTAATAA+TGG | 0.413380 | 2:-46826768 | MsG0280009171.01.T01:CDS |
| GGTCAAATCCAGAAAATTGT+TGG | 0.450466 | 2:+46826880 | None:intergenic |
| TAAACAACAATGTTTAACTT+CGG | 0.458515 | 2:-46827111 | MsG0280009171.01.T01:CDS |
| ATTTAGTGATGAAACAAAGT+TGG | 0.458588 | 2:-46827060 | MsG0280009171.01.T01:CDS |
| TGCAAGAGCAATGAAGCTTT+GGG | 0.460124 | 2:+46826699 | None:intergenic |
| GTCAAATCCAGAAAATTGTT+GGG | 0.480993 | 2:+46826881 | None:intergenic |
| TTTGGAGGGCTGTCAAAAGA+TGG | 0.482718 | 2:+46826921 | None:intergenic |
| AATTGTTGGGAACTAGTAGT+AGG | 0.495232 | 2:+46826894 | None:intergenic |
| AATCTTCCACACCAGTATCA+AGG | 0.520277 | 2:+46827174 | None:intergenic |
| GGAACAGAATTTATTTGCTG+AGG | 0.534779 | 2:-46827213 | MsG0280009171.01.T01:CDS |
| TTGGAGGGCTGTCAAAAGAT+GGG | 0.546086 | 2:+46826922 | None:intergenic |
| CTAGTAGTAGGTGAATTTGG+AGG | 0.546361 | 2:+46826906 | None:intergenic |
| ACGTATCATCAAGCAGCAGC+TGG | 0.560203 | 2:-46828639 | MsG0280009171.01.T01:CDS |
| TAATGGTGAGGATCATATCA+TGG | 0.568755 | 2:-46826751 | MsG0280009171.01.T01:CDS |
| TAGTAGTAGGTGAATTTGGA+GGG | 0.573251 | 2:+46826907 | None:intergenic |
| AACAACAATGTTTAACTTCG+GGG | 0.586447 | 2:-46827109 | MsG0280009171.01.T01:CDS |
| GTCTCGTGCTAATAATGGTG+AGG | 0.616632 | 2:-46826763 | MsG0280009171.01.T01:CDS |
| GAATTTCCTTGATACTGGTG+TGG | 0.624759 | 2:-46827180 | MsG0280009171.01.T01:CDS |
| GTTGCTGAGAGTTGTGCAAG+TGG | 0.638379 | 2:+46827085 | None:intergenic |
| TATATACTGAATTTAAAACA+AGG | 0.682236 | 2:+46828708 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAACTACAAAAAA+TGG | - | Chr2:46827555-46827574 | MsG0280009171.01.T01:intron | 10.0% |
| !! | TAAAATAATAAAAAATGTGA+AGG | - | Chr2:46827198-46827217 | MsG0280009171.01.T01:CDS | 10.0% |
| !! | TATCATTCTTTATAAAAATA+AGG | - | Chr2:46828055-46828074 | MsG0280009171.01.T01:intron | 10.0% |
| !! | CAACATACAAATTATATTAT+GGG | + | Chr2:46827889-46827908 | None:intergenic | 15.0% |
| !!! | AACATATATAAACATTCTTT+TGG | + | Chr2:46827423-46827442 | None:intergenic | 15.0% |
| !!! | TATATACTGAATTTAAAACA+AGG | + | Chr2:46826717-46826736 | None:intergenic | 15.0% |
| !! | ATATTTAAGAAACATTGCTA+GGG | + | Chr2:46827787-46827806 | None:intergenic | 20.0% |
| !! | GCAACATACAAATTATATTA+TGG | + | Chr2:46827890-46827909 | None:intergenic | 20.0% |
| !! | GCTAAAAAAAATTGATTATG+TGG | - | Chr2:46827715-46827734 | MsG0280009171.01.T01:intron | 20.0% |
| !! | GTTATAAACATACTACAAAA+TGG | + | Chr2:46826919-46826938 | None:intergenic | 20.0% |
| !! | TATATTTAAGAAACATTGCT+AGG | + | Chr2:46827788-46827807 | None:intergenic | 20.0% |
| !!! | ATAGTTAGACTTTTTTGTAA+TGG | + | Chr2:46827298-46827317 | None:intergenic | 20.0% |
| !!! | ATTGTTGTTTATTTTGTTCT+TGG | + | Chr2:46828302-46828321 | None:intergenic | 20.0% |
| !!! | TAAACAACAATGTTTAACTT+CGG | - | Chr2:46828311-46828330 | MsG0280009171.01.T01:intron | 20.0% |
| !!! | TGTAGTTACTTATTTTCAAA+AGG | - | Chr2:46828091-46828110 | MsG0280009171.01.T01:intron | 20.0% |
| !!! | TTATATTATGGGTTTTTCTA+TGG | + | Chr2:46827878-46827897 | None:intergenic | 20.0% |
| !!! | TTCATTTTGTTTTGAGTTTA+AGG | + | Chr2:46828571-46828590 | None:intergenic | 20.0% |
| ! | AACAGGTCAACAAATTAAAA+AGG | + | Chr2:46827268-46827287 | None:intergenic | 25.0% |
| ! | AATTTGTCCATGACAATATT+TGG | + | Chr2:46827373-46827392 | None:intergenic | 25.0% |
| ! | ACTTAGGGATATTATGTATT+AGG | + | Chr2:46826991-46827010 | None:intergenic | 25.0% |
| ! | ATTTAGTGATGAAACAAAGT+TGG | - | Chr2:46828362-46828381 | MsG0280009171.01.T01:intron | 25.0% |
| ! | ATTTGTCCATGACAATATTT+GGG | + | Chr2:46827372-46827391 | None:intergenic | 25.0% |
| ! | CAACCATTTATTTGAGAATT+TGG | + | Chr2:46828139-46828158 | None:intergenic | 25.0% |
| ! | CGATATTGATAAGACAATTA+TGG | - | Chr2:46828398-46828417 | MsG0280009171.01.T01:intron | 25.0% |
| ! | GATTAATATGTCATACGAAA+TGG | - | Chr2:46827606-46827625 | MsG0280009171.01.T01:intron | 25.0% |
| ! | TATTTGAGAATTTGGAGAAT+AGG | + | Chr2:46828131-46828150 | None:intergenic | 25.0% |
| ! | TCTCCAAATTCTCAAATAAA+TGG | - | Chr2:46828133-46828152 | MsG0280009171.01.T01:intron | 25.0% |
| ! | TTATTATTGATGTGTGTTAG+AGG | - | Chr2:46827742-46827761 | MsG0280009171.01.T01:intron | 25.0% |
| !! | AAACAACAATGTTTAACTTC+GGG | - | Chr2:46828312-46828331 | MsG0280009171.01.T01:intron | 25.0% |
| !! | TGAAGAAAGTTTTTGTGTAA+AGG | + | Chr2:46828463-46828482 | None:intergenic | 25.0% |
| !!! | ACGGTAAACAATTCATTTTT+AGG | - | Chr2:46827170-46827189 | MsG0280009171.01.T01:CDS | 25.0% |
| !!! | CTTAACTTGAAATATTTTGC+AGG | + | Chr2:46826872-46826891 | None:intergenic | 25.0% |
| !!! | GTTTTCTTCTGTACTTTTTA+CGG | - | Chr2:46827151-46827170 | MsG0280009171.01.T01:CDS | 25.0% |
| !!! | TATCTGATTTGGTAAGAAAA+TGG | - | Chr2:46826807-46826826 | MsG0280009171.01.T01:CDS | 25.0% |
| !!! | TTAAAATTTCCTTTTTTCCC+AGG | - | Chr2:46828179-46828198 | MsG0280009171.01.T01:intron | 25.0% |
| !!! | TTCTTATTTTCCAATTCAGT+TGG | + | Chr2:46828609-46828628 | None:intergenic | 25.0% |
| !!! | TTTGTTTTGAGTTTAAGGTA+GGG | + | Chr2:46828566-46828585 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTGAGTTTAAGGT+AGG | + | Chr2:46828567-46828586 | None:intergenic | 25.0% |
| AAACTACAAAAAATGGAACC+AGG | - | Chr2:46827562-46827581 | MsG0280009171.01.T01:intron | 30.0% | |
| AAATATGAGATGGTCAACTT+AGG | + | Chr2:46827007-46827026 | None:intergenic | 30.0% | |
| AACTACAAAAAATGGAACCA+GGG | - | Chr2:46827563-46827582 | MsG0280009171.01.T01:intron | 30.0% | |
| AACTTAGGACATAAGAGTTA+TGG | + | Chr2:46827928-46827947 | None:intergenic | 30.0% | |
| AAGTTGACCATCTCATATTT+AGG | - | Chr2:46827007-46827026 | MsG0280009171.01.T01:CDS | 30.0% | |
| AATATGAGATGGTCAACTTA+GGG | + | Chr2:46827006-46827025 | None:intergenic | 30.0% | |
| ATGAGAACCTAAATATGAGA+TGG | + | Chr2:46827017-46827036 | None:intergenic | 30.0% | |
| CAAAAACCTCAAAAAGCAAA+AGG | - | Chr2:46828637-46828656 | MsG0280009171.01.T01:CDS | 30.0% | |
| CAATTAAGAGCAAGTTTGAT+TGG | + | Chr2:46827974-46827993 | None:intergenic | 30.0% | |
| CAATTACTAAGAATATCGAC+AGG | - | Chr2:46827072-46827091 | MsG0280009171.01.T01:CDS | 30.0% | |
| GATGACATGTTAGTTATACT+TGG | + | Chr2:46827243-46827262 | None:intergenic | 30.0% | |
| GGTTCTCATGTACAATATTT+AGG | - | Chr2:46827028-46827047 | MsG0280009171.01.T01:CDS | 30.0% | |
| GTCAAATCCAGAAAATTGTT+GGG | + | Chr2:46828544-46828563 | None:intergenic | 30.0% | |
| GTTATGCTTCAGTATATGAA+CGG | - | Chr2:46827483-46827502 | MsG0280009171.01.T01:intron | 30.0% | |
| TAGATTGAGAAATGCAACTT+AGG | + | Chr2:46827943-46827962 | None:intergenic | 30.0% | |
| TTTGTCCATGACAATATTTG+GGG | + | Chr2:46827371-46827390 | None:intergenic | 30.0% | |
| ! | AACAACAATGTTTAACTTCG+GGG | - | Chr2:46828313-46828332 | MsG0280009171.01.T01:intron | 30.0% |
| ! | TTTTTCCCCAAATATTGTCA+TGG | - | Chr2:46827363-46827382 | MsG0280009171.01.T01:intron | 30.0% |
| !! | TTAATTTGTTGACCTGTTAC+CGG | - | Chr2:46827270-46827289 | MsG0280009171.01.T01:intron | 30.0% |
| !!! | AGACTTTTTTGTAATGGATC+CGG | + | Chr2:46827292-46827311 | None:intergenic | 30.0% |
| !!! | ATCTATACCGTTTTAGAGAT+AGG | + | Chr2:46827636-46827655 | None:intergenic | 30.0% |
| !!! | TCTATACCGTTTTAGAGATA+GGG | + | Chr2:46827635-46827654 | None:intergenic | 30.0% |
| AAAAGGTCTCGTGCTAATAA+TGG | - | Chr2:46828654-46828673 | MsG0280009171.01.T01:CDS | 35.0% | |
| AACCTGAATTTCCTTGATAC+TGG | - | Chr2:46828237-46828256 | MsG0280009171.01.T01:intron | 35.0% | |
| AATGGAACCAGGGAAAATTA+AGG | - | Chr2:46827573-46827592 | MsG0280009171.01.T01:intron | 35.0% | |
| AATTGTTGGGAACTAGTAGT+AGG | + | Chr2:46828531-46828550 | None:intergenic | 35.0% | |
| GAACTAGTAGTAGGTGAATT+TGG | + | Chr2:46828522-46828541 | None:intergenic | 35.0% | |
| GAGAATTTGGAGAATAGGAA+GGG | + | Chr2:46828126-46828145 | None:intergenic | 35.0% | |
| GGGATATTATGTATTAGGAG+AGG | + | Chr2:46826986-46827005 | None:intergenic | 35.0% | |
| GGTCAAATCCAGAAAATTGT+TGG | + | Chr2:46828545-46828564 | None:intergenic | 35.0% | |
| TAATGGTGAGGATCATATCA+TGG | - | Chr2:46828671-46828690 | MsG0280009171.01.T01:exon | 35.0% | |
| TAGTAGTAGGTGAATTTGGA+GGG | + | Chr2:46828518-46828537 | None:intergenic | 35.0% | |
| TGAGAATTTGGAGAATAGGA+AGG | + | Chr2:46828127-46828146 | None:intergenic | 35.0% | |
| TTCTAGATGAGACAGATTGA+TGG | - | Chr2:46827690-46827709 | MsG0280009171.01.T01:intron | 35.0% | |
| ! | AAGTGTTACTGTTGAGACTA+TGG | - | Chr2:46826736-46826755 | MsG0280009171.01.T01:CDS | 35.0% |
| ! | ACTAGTTCCCAACAATTTTC+TGG | - | Chr2:46828534-46828553 | MsG0280009171.01.T01:intron | 35.0% |
| ! | GCAGGAAATTTCAAGTGTTA+AGG | + | Chr2:46826854-46826873 | None:intergenic | 35.0% |
| ! | GGAACAGAATTTATTTGCTG+AGG | - | Chr2:46828209-46828228 | MsG0280009171.01.T01:intron | 35.0% |
| ! | TGGAATCCCTATCTCTAAAA+CGG | - | Chr2:46827626-46827645 | MsG0280009171.01.T01:intron | 35.0% |
| !!! | TTTCCTTTTTTCCCAGGAAA+TGG | - | Chr2:46828185-46828204 | MsG0280009171.01.T01:intron | 35.0% |
| AATCTTCCACACCAGTATCA+AGG | + | Chr2:46828251-46828270 | None:intergenic | 40.0% | |
| AATTCTGTTCCTCCATTTCC+TGG | + | Chr2:46828200-46828219 | None:intergenic | 40.0% | |
| ATTCTGTTCCTCCATTTCCT+GGG | + | Chr2:46828199-46828218 | None:intergenic | 40.0% | |
| CACCAGTATCAAGGAAATTC+AGG | + | Chr2:46828242-46828261 | None:intergenic | 40.0% | |
| CTAGTAGTAGGTGAATTTGG+AGG | + | Chr2:46828519-46828538 | None:intergenic | 40.0% | |
| GAACCAGGGAAAATTAAGGA+TGG | - | Chr2:46827577-46827596 | MsG0280009171.01.T01:intron | 40.0% | |
| GAATTTCCTTGATACTGGTG+TGG | - | Chr2:46828242-46828261 | MsG0280009171.01.T01:intron | 40.0% | |
| TAGATGAGACAGATTGATGG+TGG | - | Chr2:46827693-46827712 | MsG0280009171.01.T01:intron | 40.0% | |
| TGCAAGAGCAATGAAGCTTT+GGG | + | Chr2:46828726-46828745 | None:intergenic | 40.0% | |
| TTCAGTGTCTCCAACTGAAT+TGG | - | Chr2:46828596-46828615 | MsG0280009171.01.T01:intron | 40.0% | |
| ! | GTTCCATCCTTAATTTTCCC+TGG | + | Chr2:46827583-46827602 | None:intergenic | 40.0% |
| !! | TTTGTAATGGATCCGGTAAC+AGG | + | Chr2:46827285-46827304 | None:intergenic | 40.0% |
| !!! | ACGAGACCTTTTGCTTTTTG+AGG | + | Chr2:46828646-46828665 | None:intergenic | 40.0% |
| CAGCAGCTGGTTATCTGATT+TGG | - | Chr2:46826796-46826815 | MsG0280009171.01.T01:CDS | 45.0% | |
| CCTCCATTTCCTGGGAAAAA+AGG | + | Chr2:46828191-46828210 | None:intergenic | 45.0% | |
| CTGCAAGAGCAATGAAGCTT+TGG | + | Chr2:46828727-46828746 | None:intergenic | 45.0% | |
| GTCTCGTGCTAATAATGGTG+AGG | - | Chr2:46828659-46828678 | MsG0280009171.01.T01:CDS | 45.0% | |
| TCTGTCTCATCTAGAAGCTC+TGG | + | Chr2:46827686-46827705 | None:intergenic | 45.0% | |
| TTGGAGGGCTGTCAAAAGAT+GGG | + | Chr2:46828503-46828522 | None:intergenic | 45.0% | |
| TTTGGAGGGCTGTCAAAAGA+TGG | + | Chr2:46828504-46828523 | None:intergenic | 45.0% | |
| !! | AGGAGAGGCATTTGTATGTG+AGG | + | Chr2:46826971-46826990 | None:intergenic | 45.0% |
| !!! | CCTTTTTTCCCAGGAAATGG+AGG | - | Chr2:46828188-46828207 | MsG0280009171.01.T01:intron | 45.0% |
| !!! | GTATTTATTTAATTTAAAAA+TGG | + | Chr2:46827534-46827553 | None:intergenic | 5.0% |
| ACGTATCATCAAGCAGCAGC+TGG | - | Chr2:46826783-46826802 | MsG0280009171.01.T01:CDS | 50.0% | |
| ACTCGTGACCAAGCCATTGA+TGG | - | Chr2:46827657-46827676 | MsG0280009171.01.T01:intron | 50.0% | |
| GTTGCTGAGAGTTGTGCAAG+TGG | + | Chr2:46828340-46828359 | None:intergenic | 50.0% | |
| TCTGGTGTCCATCAATGGCT+TGG | + | Chr2:46827668-46827687 | None:intergenic | 50.0% | |
| ! | GAAGCTCTGGTGTCCATCAA+TGG | + | Chr2:46827673-46827692 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 46826692 | 46828752 | 46826692 | ID=MsG0280009171.01;Name=MsG0280009171.01 |
| Chr2 | mRNA | 46826692 | 46828752 | 46826692 | ID=MsG0280009171.01.T01;Parent=MsG0280009171.01;Name=MsG0280009171.01.T01;_AED=0.30;_eAED=0.30;_QI=63|0.66|0.75|1|0|0.25|4|0|203 |
| Chr2 | exon | 46828627 | 46828752 | 46828627 | ID=MsG0280009171.01.T01:exon:5048;Parent=MsG0280009171.01.T01 |
| Chr2 | exon | 46826692 | 46827240 | 46826692 | ID=MsG0280009171.01.T01:exon:5049;Parent=MsG0280009171.01.T01 |
| Chr2 | five_prime_UTR | 46828690 | 46828752 | 46828690 | ID=MsG0280009171.01.T01:five_prime_utr;Parent=MsG0280009171.01.T01 |
| Chr2 | CDS | 46828627 | 46828689 | 46828627 | ID=MsG0280009171.01.T01:cds;Parent=MsG0280009171.01.T01 |
| Chr2 | CDS | 46826692 | 46827240 | 46826692 | ID=MsG0280009171.01.T01:cds;Parent=MsG0280009171.01.T01 |
| Gene Sequence |
| Protein sequence |
