AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039492.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039492.01.T01 MTR_7g075760 94.660 206 11 0 1 206 1 206 1.60e-145 410
MsG0780039492.01.T01 MTR_7g076050 94.660 206 11 0 1 206 1 206 1.60e-145 410
MsG0780039492.01.T01 MTR_7g075750 64.249 193 65 2 14 205 4 193 1.78e-84 254
MsG0780039492.01.T01 MTR_7g075710 60.386 207 70 3 3 205 6 204 1.25e-82 250
MsG0780039492.01.T01 MTR_7g076070 58.937 207 73 3 3 205 7 205 3.49e-81 246
MsG0780039492.01.T01 MTR_8g035610 59.091 198 78 2 5 200 9 205 2.95e-80 244
MsG0780039492.01.T01 MTR_8g035610 61.828 186 68 2 17 200 7 191 7.87e-79 240
MsG0780039492.01.T01 MTR_7g075770 92.667 150 11 0 202 351 59 208 4.68e-75 231
MsG0780039492.01.T01 MTR_7g076045 61.475 122 44 1 82 203 13 131 6.36e-46 153
MsG0780039492.01.T01 MTR_5g088990 36.975 119 70 2 207 320 69 187 3.19e-16 77.4
MsG0780039492.01.T01 MTR_7g074480 61.538 52 15 2 106 157 3 49 5.04e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039492.01.T01 AT3G18030 60.326 184 70 2 19 200 18 200 2.23e-78 239
MsG0780039492.01.T01 AT1G48605 58.201 189 76 2 19 205 10 197 3.24e-77 236
MsG0780039492.01.T01 AT1G08500 35.537 121 70 3 207 320 65 184 1.22e-12 67.0

Find 90 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCACATTAAGCTTGCTAAT+TGG 0.185138 7:-64798066 MsG0780039492.01.T01:CDS
TGGCAAGCTTGGAAACAATT+AGG 0.239359 7:-64798100 MsG0780039492.01.T01:CDS
CGATGCTACTTGTGCAAATT+TGG 0.244185 7:-64795824 MsG0780039492.01.T01:CDS
ACTTGTTCTTCGTGCTTTCA+TGG 0.257403 7:-64798224 MsG0780039492.01.T01:CDS
AGGAAGCCACGGATTGTTAT+TGG 0.275266 7:-64798280 MsG0780039492.01.T01:CDS
GATGTGCGCGTGGTGGTTTA+TGG 0.319136 7:-64795858 MsG0780039492.01.T01:CDS
TTGTTTGTGTTGTAGATTGC+TGG 0.331005 7:-64797885 MsG0780039492.01.T01:intron
GGCAAGCTTGGAAACAATTA+GGG 0.331037 7:-64798099 MsG0780039492.01.T01:CDS
ATGTGCGCGTGGTGGTTTAT+GGG 0.343588 7:-64795857 MsG0780039492.01.T01:CDS
TCACATTAAGCTTGCTAATT+GGG 0.351296 7:-64798065 MsG0780039492.01.T01:CDS
TTCTTCGTGCTTTCATGGAA+TGG 0.352781 7:-64798219 MsG0780039492.01.T01:CDS
CCCATTCCGTTGACTATTGT+GGG 0.352831 7:-64796095 MsG0780039492.01.T01:CDS
CCTCCCTACGCGGAGCCGCC+TGG 0.370213 7:-64795954 MsG0780039492.01.T01:CDS
GAAAATACAGTCACACCCTT+TGG 0.387421 7:+64798136 None:intergenic
ATGGCTTCTACAAGTGCAAT+TGG 0.397298 7:-64798334 MsG0780039492.01.T01:CDS
GATGGAGAATATACTAATAC+TGG 0.404300 7:-64797690 MsG0780039492.01.T01:CDS
TCCCATTCCGTTGACTATTG+TGG 0.404705 7:-64796096 MsG0780039492.01.T01:CDS
ATCGATGTTCAGCGTGGTAT+AGG 0.411370 7:-64796008 MsG0780039492.01.T01:CDS
TCCGCGTAGGGAGGCGGAGG+AGG 0.413201 7:+64795963 None:intergenic
CTTGCAAACGCGCCACCGCT+AGG 0.418770 7:+64795888 None:intergenic
GGCAAGAGTATGAGCAGATA+AGG 0.422397 7:+64798021 None:intergenic
AAAATACAGTCACACCCTTT+GGG 0.427910 7:+64798137 None:intergenic
GGCGGCTCCGCGTAGGGAGG+CGG 0.427942 7:+64795957 None:intergenic
ACAGTTGAGTAAATCTTAGA+AGG 0.431151 7:+64797654 None:intergenic
AGTGTAGCTGCTATGAAATT+CGG 0.434401 7:-64798247 MsG0780039492.01.T01:CDS
TGACAAGCATTGTGAGATCA+TGG 0.439813 7:-64797842 MsG0780039492.01.T01:CDS
CACATAGCATCATTCATTGA+TGG 0.453945 7:+64797792 None:intergenic
TCTTCGTGCTTTCATGGAAT+GGG 0.458514 7:-64798218 MsG0780039492.01.T01:CDS
ATGAACATGAATGGCAAGCT+TGG 0.467430 7:-64798111 MsG0780039492.01.T01:CDS
GGTGTCTGAGGGATCGTAAT+CGG 0.467732 7:+64795909 None:intergenic
GGCACCAGGCGGCTCCGCGT+AGG 0.475138 7:+64795950 None:intergenic
AAATATAAATACAAAAGAAA+GGG 0.477129 7:+64795655 None:intergenic
CGCATGGATTTGATGCTAAG+AGG 0.477765 7:-64798300 MsG0780039492.01.T01:CDS
CAAATATAAATACAAAAGAA+AGG 0.480573 7:+64795654 None:intergenic
CCATCACTTGACTCATGTGG+TGG 0.486009 7:+64797708 None:intergenic
GCAAGAGTATGAGCAGATAA+GGG 0.487139 7:+64798022 None:intergenic
TGTATCGGAGAAGAAGTAGT+TGG 0.488861 7:+64796070 None:intergenic
GCACCAGGCGGCTCCGCGTA+GGG 0.489110 7:+64795951 None:intergenic
GGCTCCGCGTAGGGAGGCGG+AGG 0.495579 7:+64795960 None:intergenic
ACCGCCGACGACTCTGACGA+CGG 0.496568 7:-64796170 MsG0780039492.01.T01:CDS
ATTGATGGTGCTACAAACAT+TGG 0.501008 7:+64797807 None:intergenic
CGGATTGTTATTGGTGCTTG+TGG 0.501451 7:-64798271 MsG0780039492.01.T01:CDS
AAAGTTAGTTTATATTCAGA+TGG 0.505709 7:-64795762 MsG0780039492.01.T01:three_prime_UTR
CCCACAATAGTCAACGGAAT+GGG 0.506547 7:+64796095 None:intergenic
GTGCAAATTTGGTGATGCAT+TGG 0.511269 7:-64795813 MsG0780039492.01.T01:exon
TTGAAGAGAATTGATGAGCT+TGG 0.515583 7:-64797744 MsG0780039492.01.T01:CDS
CTGAACACCTTCGTTTGTAT+CGG 0.519819 7:+64796055 None:intergenic
TTGTGAGATCATGGGACTAC+AGG 0.520991 7:-64797833 MsG0780039492.01.T01:CDS
TCAGTAATAAAATGACAAGA+TGG 0.522137 7:+64798169 None:intergenic
AGGTTTCTTCTTCAGAATGT+TGG 0.524563 7:+64797614 None:intergenic
ATTGGAAAATCTGTTACGCA+TGG 0.532175 7:-64798316 MsG0780039492.01.T01:CDS
GCGCCACCGCTAGGTGTCTG+AGG 0.533029 7:+64795897 None:intergenic
TACTGAAGCTTCAATCCCAA+AGG 0.539852 7:-64798152 MsG0780039492.01.T01:CDS
CCAGGCGGCTCCGCGTAGGG+AGG 0.549055 7:+64795954 None:intergenic
TGTTCCGTCGTCAGAGTCGT+CGG 0.560821 7:+64796166 None:intergenic
ATATACTAATACTGGTGCAA+TGG 0.562394 7:-64797682 MsG0780039492.01.T01:CDS
ACCTCCTCCGCCTCCCTACG+CGG 0.574909 7:-64795964 MsG0780039492.01.T01:CDS
ACTGAAGCTTCAATCCCAAA+GGG 0.579371 7:-64798151 MsG0780039492.01.T01:CDS
CGCCACCGCTAGGTGTCTGA+GGG 0.583342 7:+64795898 None:intergenic
ATCTGCTCATACTCTTGCCA+AGG 0.584550 7:-64798017 MsG0780039492.01.T01:intron
CATCACTTGACTCATGTGGT+GGG 0.591191 7:+64797709 None:intergenic
TCCCACAATAGTCAACGGAA+TGG 0.594621 7:+64796094 None:intergenic
CCACCACATGAGTCAAGTGA+TGG 0.601597 7:-64797708 MsG0780039492.01.T01:CDS
GAATCAACACTATCGGCACC+AGG 0.602355 7:+64795936 None:intergenic
GACAAGCATTGTGAGATCAT+GGG 0.605301 7:-64797841 MsG0780039492.01.T01:CDS
AATATAAATACAAAAGAAAG+GGG 0.615936 7:+64795656 None:intergenic
CGGCGGAGAATCAACACTAT+CGG 0.618685 7:+64795929 None:intergenic
AACATTCTGAAGAAGAAACC+TGG 0.618852 7:-64797612 MsG0780039492.01.T01:intron
TTTGTGTTGTAGATTGCTGG+AGG 0.619900 7:-64797882 MsG0780039492.01.T01:intron
GGAACATTCATCTACAACGG+TGG 0.629825 7:-64796149 MsG0780039492.01.T01:CDS
TTGATGCTAAGAGGAAGCCA+CGG 0.639610 7:-64798291 MsG0780039492.01.T01:CDS
TTGGATCCCACAATAGTCAA+CGG 0.644116 7:+64796089 None:intergenic
CATCAATGAATGATGCTATG+TGG 0.644390 7:-64797791 MsG0780039492.01.T01:CDS
TCTCCATCACTTGACTCATG+TGG 0.653644 7:+64797705 None:intergenic
ACGCGTTGATGTGCGCGTGG+TGG 0.662317 7:-64795865 MsG0780039492.01.T01:CDS
GGAGGAGGTTGATTTAGACT+CGG 0.664905 7:+64795978 None:intergenic
CAAGCACCAATAACAATCCG+TGG 0.665735 7:+64798274 None:intergenic
GAAGGTGTTCAGTGTCAACA+CGG 0.667190 7:-64796044 MsG0780039492.01.T01:CDS
GTCTGAGGGATCGTAATCGG+CGG 0.684978 7:+64795912 None:intergenic
ATCCCTCAGACACCTAGCGG+TGG 0.690939 7:-64795900 MsG0780039492.01.T01:CDS
GACGGAACATTCATCTACAA+CGG 0.694233 7:-64796152 MsG0780039492.01.T01:CDS
TCCGTCGTCAGAGTCGTCGG+CGG 0.694416 7:+64796169 None:intergenic
AAGACGCGTTGATGTGCGCG+TGG 0.696836 7:-64795868 MsG0780039492.01.T01:CDS
GGAGGTTGATTTAGACTCGG+CGG 0.699261 7:+64795981 None:intergenic
GCAAGCTTGGAAACAATTAG+GGG 0.703028 7:-64798098 MsG0780039492.01.T01:CDS
GAGCAGATAAGGGAGCAATG+AGG 0.708356 7:+64798032 None:intergenic
TTCTTCTCCGATACAAACGA+AGG 0.708701 7:-64796062 MsG0780039492.01.T01:CDS
TTTCAGATCGATGTTCAGCG+TGG 0.715801 7:-64796014 MsG0780039492.01.T01:CDS
ACGATCCCTCAGACACCTAG+CGG 0.744735 7:-64795903 MsG0780039492.01.T01:CDS
TCAACACTATCGGCACCAGG+CGG 0.753703 7:+64795939 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAAATACAAAAGAAA+GGG + Chr7:64798316-64798335 None:intergenic 10.0%
!! AATTTATAATTTATTAGAAG+AGG + Chr7:64796708-64796727 None:intergenic 10.0%
!! ATTTATAATTTATTAGAAGA+GGG + Chr7:64796707-64796726 None:intergenic 10.0%
!!! ATTTGAATGATAATTTTATT+TGG - Chr7:64798332-64798351 MsG0780039492.01.T01:CDS 10.0%
!! AATATAAATACAAAAGAAAG+GGG + Chr7:64798315-64798334 None:intergenic 15.0%
!! CAAATATAAATACAAAAGAA+AGG + Chr7:64798317-64798336 None:intergenic 15.0%
!! TTGATACATGTAGTATTATT+AGG - Chr7:64796458-64796477 MsG0780039492.01.T01:intron 20.0%
!!! AAAGTTAGTTTATATTCAGA+TGG - Chr7:64798206-64798225 MsG0780039492.01.T01:CDS 20.0%
!!! TTCTTATTTGTCAAAAACAA+TGG + Chr7:64797135-64797154 None:intergenic 20.0%
! AAAGAGAAAAATGATTCCTA+GGG - Chr7:64797306-64797325 MsG0780039492.01.T01:intron 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - Chr7:64797147-64797166 MsG0780039492.01.T01:intron 25.0%
! ACTTTCCGATCTTAATTAAT+CGG + Chr7:64795998-64796017 None:intergenic 25.0%
! TCAATAAGCATACTAGAATA+TGG + Chr7:64796411-64796430 None:intergenic 25.0%
! TCAGTAATAAAATGACAAGA+TGG + Chr7:64795802-64795821 None:intergenic 25.0%
! TCTGGATATATATATAGAGT+TGG + Chr7:64797014-64797033 None:intergenic 25.0%
! TTGTCAAAATATCATTTCTC+TGG + Chr7:64797032-64797051 None:intergenic 25.0%
!! TATTTTCTGATGAACATGAA+TGG - Chr7:64795848-64795867 MsG0780039492.01.T01:CDS 25.0%
!!! ACGTTAGATCTTTTTTGTTT+TGG - Chr7:64796923-64796942 MsG0780039492.01.T01:intron 25.0%
!!! CTTTTTTTAATGCATTAAGC+AGG - Chr7:64797279-64797298 MsG0780039492.01.T01:intron 25.0%
!!! TAAATTTGTTTTGAAGTCGT+GGG + Chr7:64797347-64797366 None:intergenic 25.0%
!!! TCTACTTTTGAATCTTAGTT+AGG + Chr7:64797233-64797252 None:intergenic 25.0%
AAAAAGTTCATACACTCTAC+AGG + Chr7:64797265-64797284 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG + Chr7:64797122-64797141 None:intergenic 30.0%
ACAGTTGAGTAAATCTTAGA+AGG + Chr7:64796317-64796336 None:intergenic 30.0%
ATATACTAATACTGGTGCAA+TGG - Chr7:64796286-64796305 MsG0780039492.01.T01:intron 30.0%
GAAAGAGAAAAATGATTCCT+AGG - Chr7:64797305-64797324 MsG0780039492.01.T01:intron 30.0%
GATGGAGAATATACTAATAC+TGG - Chr7:64796278-64796297 MsG0780039492.01.T01:intron 30.0%
GTCACAAAATTGTCATCAAA+TGG - Chr7:64797172-64797191 MsG0780039492.01.T01:intron 30.0%
TGAAGTTGTATCAAACATGA+TGG - Chr7:64796483-64796502 MsG0780039492.01.T01:intron 30.0%
TTCCAATGTGTATAGATACT+AGG + Chr7:64796434-64796453 None:intergenic 30.0%
! CTTTTGAATCTTAGTTAGGT+AGG + Chr7:64797229-64797248 None:intergenic 30.0%
! TGAGAATAATTTGTCGAGAT+TGG + Chr7:64796845-64796864 None:intergenic 30.0%
! TTCAAGTGTTTTTCTGTCAA+AGG + Chr7:64796209-64796228 None:intergenic 30.0%
!! TCACATTAAGCTTGCTAATT+GGG - Chr7:64795903-64795922 MsG0780039492.01.T01:CDS 30.0%
!!! AACCACTTTTTGACAACTTT+TGG - Chr7:64797050-64797069 MsG0780039492.01.T01:intron 30.0%
!!! GTAAATTTGTTTTGAAGTCG+TGG + Chr7:64797348-64797367 None:intergenic 30.0%
AAAATACAGTCACACCCTTT+GGG + Chr7:64795834-64795853 None:intergenic 35.0%
AGGTTTCTTCTTCAGAATGT+TGG + Chr7:64796357-64796376 None:intergenic 35.0%
AGTGTAGCTGCTATGAAATT+CGG - Chr7:64795721-64795740 MsG0780039492.01.T01:three_prime_UTR 35.0%
ATTGGAAAATCTGTTACGCA+TGG - Chr7:64795652-64795671 MsG0780039492.01.T01:three_prime_UTR 35.0%
CAAGGTAATCAATTTATCCG+TGG - Chr7:64795969-64795988 MsG0780039492.01.T01:CDS 35.0%
CACATAGCATCATTCATTGA+TGG + Chr7:64796179-64796198 None:intergenic 35.0%
CACGGATAAATTGATTACCT+TGG + Chr7:64795971-64795990 None:intergenic 35.0%
CATCAATGAATGATGCTATG+TGG - Chr7:64796177-64796196 MsG0780039492.01.T01:CDS 35.0%
GACCTAGTATCTATACACAT+TGG - Chr7:64796429-64796448 MsG0780039492.01.T01:intron 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG + Chr7:64797055-64797074 None:intergenic 35.0%
TTGAAGAGAATTGATGAGCT+TGG - Chr7:64796224-64796243 MsG0780039492.01.T01:CDS 35.0%
TTGTTTGTGTTGTAGATTGC+TGG - Chr7:64796083-64796102 MsG0780039492.01.T01:CDS 35.0%
! AACATTCTGAAGAAGAAACC+TGG - Chr7:64796356-64796375 MsG0780039492.01.T01:intron 35.0%
! GTAGCAAGTTGCTTTAAATG+TGG - Chr7:64796793-64796812 MsG0780039492.01.T01:intron 35.0%
!! ATTGATGGTGCTACAAACAT+TGG + Chr7:64796164-64796183 None:intergenic 35.0%
!! CTCACATTAAGCTTGCTAAT+TGG - Chr7:64795902-64795921 MsG0780039492.01.T01:CDS 35.0%
ACTGAAGACTGCAGTGATTT+GGG - Chr7:64796621-64796640 MsG0780039492.01.T01:intron 40.0%
ACTGAAGCTTCAATCCCAAA+GGG - Chr7:64795817-64795836 MsG0780039492.01.T01:exon 40.0%
ACTTGTTCTTCGTGCTTTCA+TGG - Chr7:64795744-64795763 MsG0780039492.01.T01:three_prime_UTR 40.0%
ATGAACATGAATGGCAAGCT+TGG - Chr7:64795857-64795876 MsG0780039492.01.T01:CDS 40.0%
ATGGCTTCTACAAGTGCAAT+TGG - Chr7:64795634-64795653 MsG0780039492.01.T01:three_prime_UTR 40.0%
CTGAACACCTTCGTTTGTAT+CGG + Chr7:64797916-64797935 None:intergenic 40.0%
GAAAATACAGTCACACCCTT+TGG + Chr7:64795835-64795854 None:intergenic 40.0%
GAATCTTAGTTAGGTAGGCA+GGG + Chr7:64797224-64797243 None:intergenic 40.0%
GACGGAACATTCATCTACAA+CGG - Chr7:64797816-64797835 MsG0780039492.01.T01:CDS 40.0%
GCAAGCTTGGAAACAATTAG+GGG - Chr7:64795870-64795889 MsG0780039492.01.T01:CDS 40.0%
GGCAAGCTTGGAAACAATTA+GGG - Chr7:64795869-64795888 MsG0780039492.01.T01:CDS 40.0%
GGTAATCAATTTATCCGTGG+TGG - Chr7:64795972-64795991 MsG0780039492.01.T01:CDS 40.0%
GGTGGCCGATTAATTAAGAT+CGG - Chr7:64795990-64796009 MsG0780039492.01.T01:CDS 40.0%
GGTTACAAAAACCACACAGT+AGG - Chr7:64797505-64797524 MsG0780039492.01.T01:intron 40.0%
TACAAAAACCACACAGTAGG+CGG - Chr7:64797508-64797527 MsG0780039492.01.T01:intron 40.0%
TACTGAAGACTGCAGTGATT+TGG - Chr7:64796620-64796639 MsG0780039492.01.T01:intron 40.0%
TACTGAAGCTTCAATCCCAA+AGG - Chr7:64795816-64795835 MsG0780039492.01.T01:exon 40.0%
TCCTCTCAATCTTTCAACCT+TGG - Chr7:64797595-64797614 MsG0780039492.01.T01:intron 40.0%
TCTTAATTAATCGGCCACCA+CGG + Chr7:64795989-64796008 None:intergenic 40.0%
TCTTCGTGCTTTCATGGAAT+GGG - Chr7:64795750-64795769 MsG0780039492.01.T01:three_prime_UTR 40.0%
TGAATCTTAGTTAGGTAGGC+AGG + Chr7:64797225-64797244 None:intergenic 40.0%
TGGCAAGCTTGGAAACAATT+AGG - Chr7:64795868-64795887 MsG0780039492.01.T01:CDS 40.0%
TGTATCGGAGAAGAAGTAGT+TGG + Chr7:64797901-64797920 None:intergenic 40.0%
TGTCAACAATAAACCACACC+AGG + Chr7:64796377-64796396 None:intergenic 40.0%
TTCTTCGTGCTTTCATGGAA+TGG - Chr7:64795749-64795768 MsG0780039492.01.T01:three_prime_UTR 40.0%
TTCTTCTCCGATACAAACGA+AGG - Chr7:64797906-64797925 MsG0780039492.01.T01:intron 40.0%
TTGGATCCCACAATAGTCAA+CGG + Chr7:64797882-64797901 None:intergenic 40.0%
TTTGTGTTGTAGATTGCTGG+AGG - Chr7:64796086-64796105 MsG0780039492.01.T01:CDS 40.0%
! AGATGGTGGTGAATAGAAGA+AGG + Chr7:64797465-64797484 None:intergenic 40.0%
! CGATGCTACTTGTGCAAATT+TGG - Chr7:64798144-64798163 MsG0780039492.01.T01:CDS 40.0%
! GACAAGCATTGTGAGATCAT+GGG - Chr7:64796127-64796146 MsG0780039492.01.T01:CDS 40.0%
! GCAAGAGTATGAGCAGATAA+GGG + Chr7:64795949-64795968 None:intergenic 40.0%
! GTGGTTTTTGTAACCTGTTG+CGG + Chr7:64797500-64797519 None:intergenic 40.0%
! TGACAAGCATTGTGAGATCA+TGG - Chr7:64796126-64796145 MsG0780039492.01.T01:CDS 40.0%
!! GTGCAAATTTGGTGATGCAT+TGG - Chr7:64798155-64798174 MsG0780039492.01.T01:CDS 40.0%
!!! ATTTGTTTTGAAGTCGTGGG+AGG + Chr7:64797344-64797363 None:intergenic 40.0%
!!! TTTGTTTTGAAGTCGTGGGA+GGG + Chr7:64797343-64797362 None:intergenic 40.0%
ATCGATGTTCAGCGTGGTAT+AGG - Chr7:64797960-64797979 MsG0780039492.01.T01:intron 45.0%
ATCTGCTCATACTCTTGCCA+AGG - Chr7:64795951-64795970 MsG0780039492.01.T01:CDS 45.0%
CAAGCACCAATAACAATCCG+TGG + Chr7:64795697-64795716 None:intergenic 45.0%
CATCACTTGACTCATGTGGT+GGG + Chr7:64796262-64796281 None:intergenic 45.0%
CCCACAATAGTCAACGGAAT+GGG + Chr7:64797876-64797895 None:intergenic 45.0%
CGCATGGATTTGATGCTAAG+AGG - Chr7:64795668-64795687 MsG0780039492.01.T01:three_prime_UTR 45.0%
GCCAAGGTTGAAAGATTGAG+AGG + Chr7:64797599-64797618 None:intergenic 45.0%
GGAACATTCATCTACAACGG+TGG - Chr7:64797819-64797838 MsG0780039492.01.T01:CDS 45.0%
TCCCACAATAGTCAACGGAA+TGG + Chr7:64797877-64797896 None:intergenic 45.0%
TCTCCATCACTTGACTCATG+TGG + Chr7:64796266-64796285 None:intergenic 45.0%
TCTGAAGAAGAAACCTGGTG+TGG - Chr7:64796361-64796380 MsG0780039492.01.T01:intron 45.0%
TTGATGCTAAGAGGAAGCCA+CGG - Chr7:64795677-64795696 MsG0780039492.01.T01:three_prime_UTR 45.0%
TTGTGAGATCATGGGACTAC+AGG - Chr7:64796135-64796154 MsG0780039492.01.T01:CDS 45.0%
TTTCAGATCGATGTTCAGCG+TGG - Chr7:64797954-64797973 MsG0780039492.01.T01:intron 45.0%
! AAGACTGCAGTGATTTGGGT+AGG - Chr7:64796625-64796644 MsG0780039492.01.T01:intron 45.0%
! AGGAAGCCACGGATTGTTAT+TGG - Chr7:64795688-64795707 MsG0780039492.01.T01:three_prime_UTR 45.0%
! CCCATTCCGTTGACTATTGT+GGG - Chr7:64797873-64797892 MsG0780039492.01.T01:CDS 45.0%
! CGGATTGTTATTGGTGCTTG+TGG - Chr7:64795697-64795716 MsG0780039492.01.T01:three_prime_UTR 45.0%
! GATCAAGTGTTGTGCTTGTG+TGG + Chr7:64797396-64797415 None:intergenic 45.0%
! GGAGGAGGTTGATTTAGACT+CGG + Chr7:64797993-64798012 None:intergenic 45.0%
! GGCAAGAGTATGAGCAGATA+AGG + Chr7:64795950-64795969 None:intergenic 45.0%
! GTCTAAAACACCACCACCAA+TGG - Chr7:64797423-64797442 MsG0780039492.01.T01:intron 45.0%
! GTTTTTGTAACCTGTTGCGG+CGG + Chr7:64797497-64797516 None:intergenic 45.0%
! TCCCATTCCGTTGACTATTG+TGG - Chr7:64797872-64797891 MsG0780039492.01.T01:CDS 45.0%
! TGAATAGAAGAAGGAGCGTG+AGG + Chr7:64797456-64797475 None:intergenic 45.0%
!! GAAGGTGTTCAGTGTCAACA+CGG - Chr7:64797924-64797943 MsG0780039492.01.T01:intron 45.0%
!!! AGAATTAAAATTTTATAAAT+AGG + Chr7:64796664-64796683 None:intergenic 5.0%
!!! ATTTATAAAATTTTAATTCT+TGG - Chr7:64796664-64796683 MsG0780039492.01.T01:intron 5.0%
AGCCCAGGAAGAGTAATTGG+TGG + Chr7:64797575-64797594 None:intergenic 50.0%
AGTGGAGTTGAAAAGCCAGC+CGG + Chr7:64797539-64797558 None:intergenic 50.0%
ATGTGCGCGTGGTGGTTTAT+GGG - Chr7:64798111-64798130 MsG0780039492.01.T01:CDS 50.0%
CCACCACATGAGTCAAGTGA+TGG - Chr7:64796260-64796279 MsG0780039492.01.T01:intron 50.0%
CCAGGAAGAGTAATTGGTGG+CGG + Chr7:64797572-64797591 None:intergenic 50.0%
CCATCACTTGACTCATGTGG+TGG + Chr7:64796263-64796282 None:intergenic 50.0%
CGCCACCAATTACTCTTCCT+GGG - Chr7:64797570-64797589 MsG0780039492.01.T01:intron 50.0%
CGGCGGAGAATCAACACTAT+CGG + Chr7:64798042-64798061 None:intergenic 50.0%
GAAAGATTGAGAGGAAGCCC+AGG + Chr7:64797590-64797609 None:intergenic 50.0%
GAATCAACACTATCGGCACC+AGG + Chr7:64798035-64798054 None:intergenic 50.0%
GAGCAGATAAGGGAGCAATG+AGG + Chr7:64795939-64795958 None:intergenic 50.0%
GCTTACTGAGATAGTCGCCA+AGG + Chr7:64797615-64797634 None:intergenic 50.0%
GGAAGCCCAGGAAGAGTAAT+TGG + Chr7:64797578-64797597 None:intergenic 50.0%
GGTGTCTGAGGGATCGTAAT+CGG + Chr7:64798062-64798081 None:intergenic 50.0%
! GGAGGTTGATTTAGACTCGG+CGG + Chr7:64797990-64798009 None:intergenic 50.0%
!! GTAATTGGTGGCGGAAGTGT+TGG + Chr7:64797563-64797582 None:intergenic 50.0%
ACGATCCCTCAGACACCTAG+CGG - Chr7:64798065-64798084 MsG0780039492.01.T01:CDS 55.0%
AGCGTGAGGTATAGCGCCAT+TGG + Chr7:64797442-64797461 None:intergenic 55.0%
AGGTATAGCGCCATTGGTGG+TGG + Chr7:64797436-64797455 None:intergenic 55.0%
CCGCCACCAATTACTCTTCC+TGG - Chr7:64797569-64797588 MsG0780039492.01.T01:intron 55.0%
GATGTGCGCGTGGTGGTTTA+TGG - Chr7:64798110-64798129 MsG0780039492.01.T01:CDS 55.0%
GTCTGAGGGATCGTAATCGG+CGG + Chr7:64798059-64798078 None:intergenic 55.0%
GTGAGGTATAGCGCCATTGG+TGG + Chr7:64797439-64797458 None:intergenic 55.0%
TCAACACTATCGGCACCAGG+CGG + Chr7:64798032-64798051 None:intergenic 55.0%
TGTTCCGTCGTCAGAGTCGT+CGG + Chr7:64797805-64797824 None:intergenic 55.0%
TTTGTAACCTGTTGCGGCGG+TGG + Chr7:64797494-64797513 None:intergenic 55.0%
AGTCGTGGGAGGGAAGTGAG+TGG + Chr7:64797333-64797352 None:intergenic 60.0%
ATCCCTCAGACACCTAGCGG+TGG - Chr7:64798068-64798087 MsG0780039492.01.T01:CDS 60.0%
GAGGGAAGTGAGTGGTCCCT+AGG + Chr7:64797325-64797344 None:intergenic 60.0%
GGAGTTGAAAAGCCAGCCGG+AGG + Chr7:64797536-64797555 None:intergenic 60.0%
! AAGACGCGTTGATGTGCGCG+TGG - Chr7:64798100-64798119 MsG0780039492.01.T01:CDS 60.0%
!! GGTGGCGGAAGTGTTGGTAG+TGG + Chr7:64797557-64797576 None:intergenic 60.0%
ACCGCCGACGACTCTGACGA+CGG - Chr7:64797798-64797817 MsG0780039492.01.T01:CDS 65.0%
CACACAGTAGGCGGCACCTC+CGG - Chr7:64797517-64797536 MsG0780039492.01.T01:intron 65.0%
CGCCACCGCTAGGTGTCTGA+GGG + Chr7:64798073-64798092 None:intergenic 65.0%
CTTGCAAACGCGCCACCGCT+AGG + Chr7:64798083-64798102 None:intergenic 65.0%
GTAACCTGTTGCGGCGGTGG+TGG + Chr7:64797491-64797510 None:intergenic 65.0%
TCCGTCGTCAGAGTCGTCGG+CGG + Chr7:64797802-64797821 None:intergenic 65.0%
! ACGCGTTGATGTGCGCGTGG+TGG - Chr7:64798103-64798122 MsG0780039492.01.T01:CDS 65.0%
ACCTCCTCCGCCTCCCTACG+CGG - Chr7:64798004-64798023 MsG0780039492.01.T01:intron 70.0%
GCGCCACCGCTAGGTGTCTG+AGG + Chr7:64798074-64798093 None:intergenic 70.0%
! ACCTGTTGCGGCGGTGGTGG+CGG + Chr7:64797488-64797507 None:intergenic 70.0%
!! CGGAGGTGCCGCCTACTGTG+TGG + Chr7:64797519-64797538 None:intergenic 70.0%
CAGTAGGCGGCACCTCCGGC+TGG - Chr7:64797521-64797540 MsG0780039492.01.T01:intron 75.0%
GCACCAGGCGGCTCCGCGTA+GGG + Chr7:64798020-64798039 None:intergenic 75.0%
TCCGCCACCACCGCCGCAAC+AGG - Chr7:64797484-64797503 MsG0780039492.01.T01:intron 75.0%
TCCGCGTAGGGAGGCGGAGG+AGG + Chr7:64798008-64798027 None:intergenic 75.0%
!! GGCGGTGGTGGCGGAGATGG+TGG + Chr7:64797479-64797498 None:intergenic 75.0%
!! TGCGGCGGTGGTGGCGGAGA+TGG + Chr7:64797482-64797501 None:intergenic 75.0%
! CCAGGCGGCTCCGCGTAGGG+AGG + Chr7:64798017-64798036 None:intergenic 80.0%
! CCTCCCTACGCGGAGCCGCC+TGG - Chr7:64798014-64798033 MsG0780039492.01.T01:intron 80.0%
! GGCACCAGGCGGCTCCGCGT+AGG + Chr7:64798021-64798040 None:intergenic 80.0%
! GGCGGCTCCGCGTAGGGAGG+CGG + Chr7:64798014-64798033 None:intergenic 80.0%
! GGCTCCGCGTAGGGAGGCGG+AGG + Chr7:64798011-64798030 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr7 gene 64795634 64798356 64795634 ID=MsG0780039492.01;Name=MsG0780039492.01
Chr7 mRNA 64795634 64798356 64795634 ID=MsG0780039492.01.T01;Parent=MsG0780039492.01;Name=MsG0780039492.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0|0.33|1|1|1|3|187|351
Chr7 exon 64795634 64796257 64795634 ID=MsG0780039492.01.T01:exon:10013;Parent=MsG0780039492.01.T01
Chr7 exon 64797613 64797892 64797613 ID=MsG0780039492.01.T01:exon:10012;Parent=MsG0780039492.01.T01
Chr7 exon 64798018 64798356 64798018 ID=MsG0780039492.01.T01:exon:10011;Parent=MsG0780039492.01.T01
Chr7 CDS 64798018 64798356 64798018 ID=MsG0780039492.01.T01:cds;Parent=MsG0780039492.01.T01
Chr7 CDS 64797613 64797892 64797613 ID=MsG0780039492.01.T01:cds;Parent=MsG0780039492.01.T01
Chr7 CDS 64795821 64796257 64795821 ID=MsG0780039492.01.T01:cds;Parent=MsG0780039492.01.T01
Chr7 three_prime_UTR 64795634 64795820 64795634 ID=MsG0780039492.01.T01:three_prime_utr;Parent=MsG0780039492.01.T01
Gene Sequence

>MsG0780039492.01.T01

ATGGCTTCTACAAGTGCAATTGGAAAATCTGTTACGCATGGATTTGATGCTAAGAGGAAGCCACGGATTGTTATTGGTGCTTGTGGAAGTGTAGCTGCTATGAAATTCGGACTTGTTCTTCGTGCTTTCATGGAATGGGCAGAAGTACATGCAATTGTCACAAAACCATCTTGTCATTTTATTACTGAAGCTTCAATCCCAAAGGGTGTGACTGTATTTTCTGATGAACATGAATGGCAAGCTTGGAAACAATTAGGGGATACTGCTGCTCACATTAAGCTTGCTAATTGGGCTGATATCTTCCTCATTGCTCCCTTATCTGCTCATACTCTTGCCAAGATTGCTGGAGGATTGTGTGACAACTTATTGACAAGCATTGTGAGATCATGGGACTACAGGAAGCCAATGTTTGTAGCACCATCAATGAATGATGCTATGTGGAGAAATCCTTTGACAGAAAAACACTTGAAGAGAATTGATGAGCTTGGCATTACTCTCATCCCACCACATGAGTCAAGTGATGGAGAATATACTAATACTGGTGCAATGGCTGATCCTTCTAAGATTTACTCAACTGTTAGACTCTTTTATGATACCAACATTCTGAAGAAGAAACCTGTTTTCAACACGAATTCGAATCAGAGTGTGATTCTCACGTACAACAAAACAGCTTACACGAGCTGCACCGCCGACGACTCTGACGACGGAACATTCATCTACAACGGTGGAACGAATAACTTCAGCGAATCGTTGACTATTCCCATTCCGTTGACTATTGTGGGATCCAACTACTTCTTCTCCGATACAAACGAAGGTGTTCAGTGTCAACACGGTTTAGCATTTCAGATCGATGTTCAGCGTGGTATAGGATTGCCGCCGAGTCTAAATCAACCTCCTCCGCCTCCCTACGCGGAGCCGCCTGGTGCCGATAGTGTTGATTCTCCGCCGATTACGATCCCTCAGACACCTAGCGGTGGCGCGTTTGCAAGACGCGTTGATGTGCGCGTGGTGGTTTATGGGTTTTGTGTTGCGATGCTACTTGTGCAAATTTGGTGA
Protein sequence

>MsG0780039492.01.T01

MASTSAIGKSVTHGFDAKRKPRIVIGACGSVAAMKFGLVLRAFMEWAEVHAIVTKPSCHFITEASIPKGVTVFSDEHEWQAWKQLGDTAAHIKLANWADIFLIAPLSAHTLAKIAGGLCDNLLTSIVRSWDYRKPMFVAPSMNDAMWRNPLTEKHLKRIDELGITLIPPHESSDGEYTNTGAMADPSKIYSTVRLFYDTNILKKKPVFNTNSNQSVILTYNKTAYTSCTADDSDDGTFIYNGGTNNFSESLTIPIPLTIVGSNYFFSDTNEGVQCQHGLAFQIDVQRGIGLPPSLNQPPPPPYAEPPGADSVDSPPITIPQTPSGGAFARRVDVRVVVYGFCVAMLLVQIW*