AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040238.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040238.01.T01 MTR_7g086500 90.909 363 4 1 13 375 13 346 0.0 625
MsG0780040238.01.T01 MTR_7g086500 90.571 350 4 1 13 362 13 333 0.0 599
MsG0780040238.01.T01 MTR_5g087500 68.839 353 81 1 10 362 23 346 3.33e-179 501
MsG0780040238.01.T01 MTR_5g087500 68.946 351 80 1 10 360 23 344 9.68e-179 500
MsG0780040238.01.T01 MTR_5g087500 68.946 351 80 1 10 360 23 344 1.15e-177 500
MsG0780040238.01.T01 MTR_7g094490 54.179 347 124 4 17 360 36 350 6.84e-129 376
MsG0780040238.01.T01 MTR_1g072650 54.783 345 121 4 19 360 42 354 4.06e-125 367
MsG0780040238.01.T01 MTR_4g009630 60.190 211 55 1 16 226 23 204 2.89e-85 263
MsG0780040238.01.T01 MTR_4g009630 60.190 211 55 1 16 226 23 204 5.04e-84 261
MsG0780040238.01.T01 MTR_3g069000 41.611 149 83 2 210 357 51 196 1.96e-28 112
MsG0780040238.01.T01 MTR_5g005940 29.940 167 94 4 199 364 521 665 6.63e-16 79.7
MsG0780040238.01.T01 MTR_1g104870 30.247 162 94 3 199 359 524 667 6.84e-15 76.6
MsG0780040238.01.T01 MTR_5g096700 29.139 151 91 4 207 355 96 232 1.81e-13 70.5
MsG0780040238.01.T01 MTR_5g096700 29.139 151 91 4 207 355 155 291 2.47e-13 70.9
MsG0780040238.01.T01 MTR_7g094900 27.879 165 100 3 195 358 526 672 2.53e-13 72.0
MsG0780040238.01.T01 MTR_7g094910 27.879 165 100 3 195 358 507 653 6.06e-13 70.5
MsG0780040238.01.T01 MTR_3g061090 28.667 150 92 3 207 355 83 218 9.02e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040238.01.T01 AT3G03740 71.831 355 70 2 8 361 36 361 0.0 512
MsG0780040238.01.T01 AT3G43700 62.155 362 105 3 4 362 21 353 5.70e-162 458
MsG0780040238.01.T01 AT3G43700 62.222 360 104 3 4 360 21 351 6.92e-161 455
MsG0780040238.01.T01 AT3G43700 61.878 362 106 3 4 362 21 353 3.59e-160 456
MsG0780040238.01.T01 AT5G21010 62.117 359 102 3 6 360 16 344 7.45e-157 447
MsG0780040238.01.T01 AT3G06190 53.297 364 135 4 2 362 16 347 2.51e-128 373
MsG0780040238.01.T01 AT3G06190 53.315 362 134 4 2 360 16 345 6.29e-127 371
MsG0780040238.01.T01 AT2G39760 52.089 359 133 5 10 363 16 340 4.10e-124 362
MsG0780040238.01.T01 AT2G39760 52.089 359 133 5 10 363 16 340 4.10e-124 362
MsG0780040238.01.T01 AT2G39760 52.235 358 132 5 10 362 16 339 6.92e-124 361
MsG0780040238.01.T01 AT2G39760 52.422 351 130 4 10 357 16 332 2.23e-123 362
MsG0780040238.01.T01 AT5G19000 52.738 347 129 4 17 360 32 346 6.73e-122 358
MsG0780040238.01.T01 AT5G19000 52.738 347 129 4 17 360 32 346 6.73e-122 358
MsG0780040238.01.T01 AT5G19000 47.906 382 129 5 17 360 32 381 1.12e-114 341
MsG0780040238.01.T01 AT3G06190 55.351 271 91 2 2 271 16 257 2.45e-100 300
MsG0780040238.01.T01 AT3G06190 55.351 271 91 2 2 271 16 257 4.59e-100 298
MsG0780040238.01.T01 AT3G06190 54.513 277 95 2 2 276 16 263 1.64e-99 297
MsG0780040238.01.T01 AT5G19330 30.667 150 88 2 211 359 535 669 2.79e-15 77.8
MsG0780040238.01.T01 AT5G13060 29.139 151 89 3 211 359 562 696 8.45e-13 70.5
MsG0780040238.01.T01 AT1G55760 31.333 150 88 3 207 355 154 289 7.86e-12 66.2

Find 72 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGACATTGGATCTCATTT+TGG 0.215704 7:+74779008 MsG0780040238.01.T01:CDS
AGTGGTGCTATTGTTGCTTC+TGG 0.317968 7:-74777505 None:intergenic
TGAACTTTATGTTTGCCATT+AGG 0.329043 7:-74777822 None:intergenic
AGATTCTGTTGCCTATATTC+TGG 0.342793 7:+74779556 MsG0780040238.01.T01:CDS
ACATAAGCAGAATTATCTTC+TGG 0.343401 7:-74777723 None:intergenic
TACCGTTTCTGTTACGGAAC+GGG 0.346385 7:-74777565 None:intergenic
TGAGATCCAATGTCAGATTC+AGG 0.359655 7:-74779002 None:intergenic
CCGCGATACTTAAGAGTATA+AGG 0.362399 7:-74777876 None:intergenic
TTGCTTGATCAGAGTCCTAA+TGG 0.403020 7:+74777807 MsG0780040238.01.T01:CDS
CATAAGCAGAATTATCTTCT+GGG 0.407215 7:-74777722 None:intergenic
CGAGGCGTCGTCCTTCCTTA+AGG 0.407563 7:+74778899 MsG0780040238.01.T01:CDS
ACCGTTTACCGTTTCTGTTA+CGG 0.412319 7:-74777571 None:intergenic
TCATGCACACAAGCTTGTTA+TGG 0.417093 7:+74779091 MsG0780040238.01.T01:CDS
TCTTCAAACAGTCATCCTTA+AGG 0.420565 7:-74778914 None:intergenic
AGCTCTAACATCGGTACCTT+CGG 0.424836 7:-74777769 None:intergenic
GGTCAATTTAGAGCAATCTA+TGG 0.427620 7:-74778967 None:intergenic
CAGTTTCAAATGCAGTTGAC+CGG 0.434817 7:-74779118 None:intergenic
AACATAGACTAAAGCTAGTT+GGG 0.438804 7:-74778089 None:intergenic
AAACATAGACTAAAGCTAGT+TGG 0.448333 7:-74778090 None:intergenic
CTTTCTCTGTTGGCGGTGAA+AGG 0.452058 7:+74779066 MsG0780040238.01.T01:CDS
TACTCACTTGCTAAAGGAAT+GGG 0.459131 7:+74777618 MsG0780040238.01.T01:CDS
TCCGTAACAGAAACGGTAAA+CGG 0.459420 7:+74777570 MsG0780040238.01.T01:CDS
CACCGTCGGTGGTTACCAAT+GGG 0.465352 7:+74777671 MsG0780040238.01.T01:CDS
ATCAGCAAGAGCCAGAATAT+AGG 0.478633 7:-74779567 None:intergenic
GATGTTACTTTCTCTGTTGG+CGG 0.478714 7:+74779059 MsG0780040238.01.T01:CDS
AGGGCTACCTTGAAAACCTT+AGG 0.482679 7:-74779197 None:intergenic
TGGCATGCTGTTAGAGAATG+AGG 0.486791 7:+74779028 MsG0780040238.01.T01:CDS
TCACCGTCGGTGGTTACCAA+TGG 0.494126 7:+74777670 MsG0780040238.01.T01:CDS
TCTGATGTTACTTTCTCTGT+TGG 0.503057 7:+74779056 MsG0780040238.01.T01:CDS
TTCATTGCTCTCGCTTCCGA+AGG 0.509532 7:+74777753 MsG0780040238.01.T01:CDS
AGCAGAAAATTGTAGACAGA+TGG 0.509800 7:-74779615 None:intergenic
AAAGGCTACTCACTTGCTAA+AGG 0.511130 7:+74777612 MsG0780040238.01.T01:CDS
TGACCGTGATGTAGTTGTTA+CGG 0.514668 7:+74779166 MsG0780040238.01.T01:CDS
GTCAGATTCAGGAACATGTA+TGG 0.516734 7:-74778991 None:intergenic
TGTTACGGACATGGAACCTA+AGG 0.519252 7:+74779181 MsG0780040238.01.T01:CDS
AGCAAAATTATTAGCTGCTG+CGG 0.528128 7:+74779469 MsG0780040238.01.T01:CDS
CTACTCACTTGCTAAAGGAA+TGG 0.531058 7:+74777617 MsG0780040238.01.T01:CDS
GCAAATGTTTCAGATATTGA+AGG 0.534012 7:-74779446 None:intergenic
TTCCCGTTCCGTAACAGAAA+CGG 0.543108 7:+74777563 MsG0780040238.01.T01:CDS
CTTGCTAAAGGAATGGGAGT+TGG 0.546144 7:+74777624 MsG0780040238.01.T01:CDS
TTTCAAACGTGCTCAACTCG+AGG 0.551258 7:+74778881 MsG0780040238.01.T01:CDS
TCGCACATCAACTTAAGTCT+AGG 0.559900 7:-74779506 None:intergenic
TTTGATCGTTCTCTTGAGAG+TGG 0.561546 7:+74777852 MsG0780040238.01.T01:CDS
AGTTTCAAATGCAGTTGACC+GGG 0.564712 7:-74779117 None:intergenic
ACAAGCTTGTTATGGCAGCC+CGG 0.567478 7:+74779099 MsG0780040238.01.T01:CDS
TGCTGATCGCTATCATGCCA+CGG 0.569300 7:+74779583 MsG0780040238.01.T01:CDS
CATGTTCCTGAATCTGACAT+TGG 0.572485 7:+74778996 MsG0780040238.01.T01:CDS
TGATGTAGTTGTTACGGACA+TGG 0.576712 7:+74779172 MsG0780040238.01.T01:CDS
TCACACAAGTTCGTAATCAA+AGG 0.585618 7:+74777594 MsG0780040238.01.T01:CDS
AATGCTCATGGTGATGGTAG+TGG 0.588506 7:-74777523 None:intergenic
ATGTTTCAGATATTGAAGGC+AGG 0.589131 7:-74779442 None:intergenic
TTACCGTTTCTGTTACGGAA+CGG 0.597618 7:-74777566 None:intergenic
CAAACAGTCATCCTTAAGGA+AGG 0.597960 7:-74778910 None:intergenic
GCAATTTACTTCTACCCCGA+CGG 0.600192 7:+74777693 MsG0780040238.01.T01:CDS
TTAAGTATCGCGGCAGCATG+TGG 0.614071 7:+74777886 MsG0780040238.01.T01:CDS
ACCGACGGTGAAAGTCTCGC+TGG 0.614457 7:-74777658 None:intergenic
GTCCGTACAAAATTGAGATG+TGG 0.619974 7:+74778035 MsG0780040238.01.T01:intron
TGCCCATTGGTAACCACCGA+CGG 0.620357 7:-74777673 None:intergenic
AGCGAGACTTTCACCGTCGG+TGG 0.626234 7:+74777660 MsG0780040238.01.T01:CDS
TGACAGAATGCTCATGGTGA+TGG 0.627277 7:-74777529 None:intergenic
GGTAGAAGTAAATTGCCCAT+TGG 0.630166 7:-74777686 None:intergenic
CGTACAAAATTGAGATGTGG+AGG 0.643137 7:+74778038 MsG0780040238.01.T01:CDS
CCTTATACTCTTAAGTATCG+CGG 0.648643 7:+74777876 MsG0780040238.01.T01:CDS
ATGCTGTTAGAGAATGAGGA+AGG 0.650328 7:+74779032 MsG0780040238.01.T01:CDS
GGACGACACAACAACACCAA+CGG 0.658560 7:-74778946 None:intergenic
TCGTGATGACAGAATGCTCA+TGG 0.666515 7:-74777535 None:intergenic
TTGAAGATAAACTGCACCGT+TGG 0.667229 7:+74778930 MsG0780040238.01.T01:CDS
AATAAACAAACTCACCAACA+AGG 0.669992 7:-74779643 None:intergenic
AGATTCAGGAACATGTATGG+TGG 0.696100 7:-74778988 None:intergenic
GCCAGCGAGACTTTCACCGT+CGG 0.702261 7:+74777657 MsG0780040238.01.T01:CDS
TGTCCGTAACAACTACATCA+CGG 0.703388 7:-74779169 None:intergenic
ACAGATGGACTTTAACTCCG+TGG 0.717721 7:-74779600 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAATTAAATGAAGTA+TGG + Chr7:74778684-74778703 MsG0780040238.01.T01:intron 10.0%
!! CTACACAATTGAATTAAAAT+TGG - Chr7:74777937-74777956 None:intergenic 20.0%
!! GATATGATTTATGTGTAATT+AGG + Chr7:74778771-74778790 MsG0780040238.01.T01:intron 20.0%
!!! AACTGAATTTTTCAATAGTA+TGG + Chr7:74779136-74779155 MsG0780040238.01.T01:CDS 20.0%
! AAAGTATACAACAAAATGGA+TGG - Chr7:74778811-74778830 None:intergenic 25.0%
! ATGTACATTGAATTGAATCA+AGG + Chr7:74778381-74778400 MsG0780040238.01.T01:intron 25.0%
! GAATAAAAGATAGCTACAAA+AGG - Chr7:74779252-74779271 None:intergenic 25.0%
! TAAGAAAATCACCATGTAAT+AGG - Chr7:74778717-74778736 None:intergenic 25.0%
! TCACAAAGTATACAACAAAA+TGG - Chr7:74778815-74778834 None:intergenic 25.0%
! TGTACATTGAATTGAATCAA+GGG + Chr7:74778382-74778401 MsG0780040238.01.T01:intron 25.0%
!!! ACTAGTTTGAATTTTGGATT+AGG + Chr7:74777968-74777987 MsG0780040238.01.T01:intron 25.0%
!!! GATTAGAATAACTTTTTCGA+AGG - Chr7:74778287-74778306 None:intergenic 25.0%
!!! GTTGTAACTAGTTTGAATTT+TGG + Chr7:74777962-74777981 MsG0780040238.01.T01:intron 25.0%
!!! TGAATTTTTCAATAGTATGG+AGG + Chr7:74779139-74779158 MsG0780040238.01.T01:CDS 25.0%
AAAAGATAGCTACAAAAGGA+CGG - Chr7:74779248-74779267 None:intergenic 30.0%
AAACATAGACTAAAGCTAGT+TGG - Chr7:74778093-74778112 None:intergenic 30.0%
AACATAGACTAAAGCTAGTT+GGG - Chr7:74778092-74778111 None:intergenic 30.0%
AATAAACAAACTCACCAACA+AGG - Chr7:74779646-74779665 None:intergenic 30.0%
ACAATTTAAATCTCGACATC+AGG - Chr7:74778538-74778557 None:intergenic 30.0%
ACATAAGCAGAATTATCTTC+TGG - Chr7:74777726-74777745 None:intergenic 30.0%
AGAATAAACATATGTCCAGA+AGG - Chr7:74778651-74778670 None:intergenic 30.0%
AGGACACAAAACATCTTAAT+TGG - Chr7:74778336-74778355 None:intergenic 30.0%
AGTGTTGCATATTATTTGCT+TGG + Chr7:74779313-74779332 MsG0780040238.01.T01:intron 30.0%
CAATTAAACATGCACTTATG+CGG + Chr7:74778216-74778235 MsG0780040238.01.T01:intron 30.0%
CATAAGCAGAATTATCTTCT+GGG - Chr7:74777725-74777744 None:intergenic 30.0%
GCAAATGTTTCAGATATTGA+AGG - Chr7:74779449-74779468 None:intergenic 30.0%
TGAACTTTATGTTTGCCATT+AGG - Chr7:74777825-74777844 None:intergenic 30.0%
TGTTAACTCGCTAAAATTCA+AGG - Chr7:74778356-74778375 None:intergenic 30.0%
TTTCAGTAAAAGCTACACTT+TGG - Chr7:74778158-74778177 None:intergenic 30.0%
! AAATTGTACTATTTGCTACG+TGG + Chr7:74778551-74778570 MsG0780040238.01.T01:intron 30.0%
! AATTGTACTATTTGCTACGT+GGG + Chr7:74778552-74778571 MsG0780040238.01.T01:intron 30.0%
! ACAACATCAAGAGTTTTTCA+TGG - Chr7:74778751-74778770 None:intergenic 30.0%
! AGTGTAGCTTTTACTGAAAT+TGG + Chr7:74778159-74778178 MsG0780040238.01.T01:intron 30.0%
! CAACATCAAGAGTTTTTCAT+GGG - Chr7:74778750-74778769 None:intergenic 30.0%
! CTAATCTAAAGTCAGTTTGT+TGG + Chr7:74778301-74778320 MsG0780040238.01.T01:intron 30.0%
! CTTTAGTCTATGTTTTGTGT+GGG + Chr7:74778098-74778117 MsG0780040238.01.T01:CDS 30.0%
! TTCAAAAAGAGCTCTAACAT+CGG - Chr7:74777781-74777800 None:intergenic 30.0%
!! ATGGCTTTAATCCTATTACA+TGG + Chr7:74778703-74778722 MsG0780040238.01.T01:intron 30.0%
!! GTTTTATTATGACAGGGTTT+GGG + Chr7:74778238-74778257 MsG0780040238.01.T01:intron 30.0%
!! TGGATTAGGTTTTCATTTCT+AGG + Chr7:74777982-74778001 MsG0780040238.01.T01:intron 30.0%
!!! TATGCGGTTTTATTATGACA+GGG + Chr7:74778232-74778251 MsG0780040238.01.T01:intron 30.0%
!!! TTATGCGGTTTTATTATGAC+AGG + Chr7:74778231-74778250 MsG0780040238.01.T01:intron 30.0%
AAATGACACGTTAGAGGAAA+AGG - Chr7:74779220-74779239 None:intergenic 35.0%
AATGACACGTTAGAGGAAAA+GGG - Chr7:74779219-74779238 None:intergenic 35.0%
ACACAAAAGCAGTGTATCAT+TGG - Chr7:74778843-74778862 None:intergenic 35.0%
AGATTCTGTTGCCTATATTC+TGG + Chr7:74779556-74779575 MsG0780040238.01.T01:CDS 35.0%
AGCAAAATTATTAGCTGCTG+CGG + Chr7:74779469-74779488 MsG0780040238.01.T01:CDS 35.0%
AGCAGAAAATTGTAGACAGA+TGG - Chr7:74779618-74779637 None:intergenic 35.0%
ATGTTTCAGATATTGAAGGC+AGG - Chr7:74779445-74779464 None:intergenic 35.0%
ATTGTGTATCCCTACTTAGT+GGG + Chr7:74778409-74778428 MsG0780040238.01.T01:intron 35.0%
CGCATAAGTGCATGTTTAAT+TGG - Chr7:74778218-74778237 None:intergenic 35.0%
CTTGAATTCTATTGTTGAGC+AGG + Chr7:74779349-74779368 MsG0780040238.01.T01:intron 35.0%
TAAGTGCATGTTTAATTGGC+AGG - Chr7:74778214-74778233 None:intergenic 35.0%
TAGAATACATCGCTTAGCTT+CGG - Chr7:74778506-74778525 None:intergenic 35.0%
TCACACAAGTTCGTAATCAA+AGG + Chr7:74777594-74777613 MsG0780040238.01.T01:CDS 35.0%
TCTTCAAACAGTCATCCTTA+AGG - Chr7:74778917-74778936 None:intergenic 35.0%
TGGTGAGTTTATCAAAATCG+CGG + Chr7:74778121-74778140 MsG0780040238.01.T01:intron 35.0%
! AGCTTTTACTGAAATTGGAC+TGG + Chr7:74778164-74778183 MsG0780040238.01.T01:intron 35.0%
! AGTAGCTGACTATACTTTTG+TGG - Chr7:74779671-74779690 None:intergenic 35.0%
! CCTTATACTCTTAAGTATCG+CGG + Chr7:74777876-74777895 MsG0780040238.01.T01:CDS 35.0%
! CTCCACATCTCAATTTTGTA+CGG - Chr7:74778040-74778059 None:intergenic 35.0%
! GCTTTAGTCTATGTTTTGTG+TGG + Chr7:74778097-74778116 MsG0780040238.01.T01:CDS 35.0%
! GGTCAATTTAGAGCAATCTA+TGG - Chr7:74778970-74778989 None:intergenic 35.0%
! GTAGCTGACTATACTTTTGT+GGG - Chr7:74779670-74779689 None:intergenic 35.0%
! TACTCACTTGCTAAAGGAAT+GGG + Chr7:74777618-74777637 MsG0780040238.01.T01:CDS 35.0%
! TCTGACATTGGATCTCATTT+TGG + Chr7:74779008-74779027 MsG0780040238.01.T01:CDS 35.0%
! TTTTCTGCTGAAAACCTTGT+TGG + Chr7:74779629-74779648 MsG0780040238.01.T01:CDS 35.0%
!! ATACACTGCTTTTGTGTTAG+GGG + Chr7:74778846-74778865 MsG0780040238.01.T01:intron 35.0%
!! GATACACTGCTTTTGTGTTA+GGG + Chr7:74778845-74778864 MsG0780040238.01.T01:intron 35.0%
!! TCTGATGTTACTTTCTCTGT+TGG + Chr7:74779056-74779075 MsG0780040238.01.T01:CDS 35.0%
!! TGATACACTGCTTTTGTGTT+AGG + Chr7:74778844-74778863 MsG0780040238.01.T01:intron 35.0%
!!! GGTTTTATTATGACAGGGTT+TGG + Chr7:74778237-74778256 MsG0780040238.01.T01:intron 35.0%
ACCGTTTACCGTTTCTGTTA+CGG - Chr7:74777574-74777593 None:intergenic 40.0%
AGATTCAGGAACATGTATGG+TGG - Chr7:74778991-74779010 None:intergenic 40.0%
AGTTTCAAATGCAGTTGACC+GGG - Chr7:74779120-74779139 None:intergenic 40.0%
ATCAGCAAGAGCCAGAATAT+AGG - Chr7:74779570-74779589 None:intergenic 40.0%
ATGCTGTTAGAGAATGAGGA+AGG + Chr7:74779032-74779051 MsG0780040238.01.T01:CDS 40.0%
CAAACAGTCATCCTTAAGGA+AGG - Chr7:74778913-74778932 None:intergenic 40.0%
CAGTTTCAAATGCAGTTGAC+CGG - Chr7:74779121-74779140 None:intergenic 40.0%
CATGTTCCTGAATCTGACAT+TGG + Chr7:74778996-74779015 MsG0780040238.01.T01:CDS 40.0%
CGTACAAAATTGAGATGTGG+AGG + Chr7:74778038-74778057 MsG0780040238.01.T01:CDS 40.0%
GATTGTGTATCCCTACTTAG+TGG + Chr7:74778408-74778427 MsG0780040238.01.T01:intron 40.0%
GGTAGAAGTAAATTGCCCAT+TGG - Chr7:74777689-74777708 None:intergenic 40.0%
GTCAGATTCAGGAACATGTA+TGG - Chr7:74778994-74779013 None:intergenic 40.0%
GTCCGTACAAAATTGAGATG+TGG + Chr7:74778035-74778054 MsG0780040238.01.T01:intron 40.0%
TATCCCTACTTAGTGGGATA+AGG + Chr7:74778415-74778434 MsG0780040238.01.T01:intron 40.0%
TCCAGAAGGAAATAACTCGA+TGG - Chr7:74778637-74778656 None:intergenic 40.0%
TCCGTAACAGAAACGGTAAA+CGG + Chr7:74777570-74777589 MsG0780040238.01.T01:CDS 40.0%
TCGCACATCAACTTAAGTCT+AGG - Chr7:74779509-74779528 None:intergenic 40.0%
TGACCGTGATGTAGTTGTTA+CGG + Chr7:74779166-74779185 MsG0780040238.01.T01:CDS 40.0%
TGAGATCCAATGTCAGATTC+AGG - Chr7:74779005-74779024 None:intergenic 40.0%
TGAGTTTATCAAAATCGCGG+TGG + Chr7:74778124-74778143 MsG0780040238.01.T01:intron 40.0%
TGATGTAGTTGTTACGGACA+TGG + Chr7:74779172-74779191 MsG0780040238.01.T01:CDS 40.0%
TGTCCGTAACAACTACATCA+CGG - Chr7:74779172-74779191 None:intergenic 40.0%
TTACCGTTTCTGTTACGGAA+CGG - Chr7:74777569-74777588 None:intergenic 40.0%
TTGAAGATAAACTGCACCGT+TGG + Chr7:74778930-74778949 MsG0780040238.01.T01:CDS 40.0%
TTGCTTGATCAGAGTCCTAA+TGG + Chr7:74777807-74777826 MsG0780040238.01.T01:CDS 40.0%
TTTGATCGTTCTCTTGAGAG+TGG + Chr7:74777852-74777871 MsG0780040238.01.T01:CDS 40.0%
! AAAGGCTACTCACTTGCTAA+AGG + Chr7:74777612-74777631 MsG0780040238.01.T01:CDS 40.0%
! AAGCCTTATCCCACTAAGTA+GGG - Chr7:74778421-74778440 None:intergenic 40.0%
! ATCTTCTGGGTTTTTACCGT+CGG - Chr7:74777712-74777731 None:intergenic 40.0%
! CATGGAACCTAAGGTTTTCA+AGG + Chr7:74779190-74779209 MsG0780040238.01.T01:CDS 40.0%
! CCGCGATACTTAAGAGTATA+AGG - Chr7:74777879-74777898 None:intergenic 40.0%
! CTACTCACTTGCTAAAGGAA+TGG + Chr7:74777617-74777636 MsG0780040238.01.T01:CDS 40.0%
! TAGTCTATGTTTTGTGTGGG+TGG + Chr7:74778101-74778120 MsG0780040238.01.T01:CDS 40.0%
! TCCATCGAGTTATTTCCTTC+TGG + Chr7:74778633-74778652 MsG0780040238.01.T01:intron 40.0%
! TTTGTGTTAGGGGGTATAAG+CGG + Chr7:74778856-74778875 MsG0780040238.01.T01:intron 40.0%
!! GATGTTACTTTCTCTGTTGG+CGG + Chr7:74779059-74779078 MsG0780040238.01.T01:CDS 40.0%
!! TACACTGCTTTTGTGTTAGG+GGG + Chr7:74778847-74778866 MsG0780040238.01.T01:intron 40.0%
!! TCATGCACACAAGCTTGTTA+TGG + Chr7:74779091-74779110 MsG0780040238.01.T01:CDS 40.0%
AGATAGCTACAAAAGGACGG+AGG - Chr7:74779245-74779264 None:intergenic 45.0%
AGGGCTACCTTGAAAACCTT+AGG - Chr7:74779200-74779219 None:intergenic 45.0%
CTACTTAGTGGGATAAGGCT+TGG + Chr7:74778420-74778439 MsG0780040238.01.T01:intron 45.0%
CTTGCTAAAGGAATGGGAGT+TGG + Chr7:74777624-74777643 MsG0780040238.01.T01:CDS 45.0%
GAGGGAAAATGACACGTTAG+AGG - Chr7:74779226-74779245 None:intergenic 45.0%
GATAGCTACAAAAGGACGGA+GGG - Chr7:74779244-74779263 None:intergenic 45.0%
GCAATTTACTTCTACCCCGA+CGG + Chr7:74777693-74777712 MsG0780040238.01.T01:CDS 45.0%
GTGCATGTTTAATTGGCAGG+TGG - Chr7:74778211-74778230 None:intergenic 45.0%
TACCGTTTCTGTTACGGAAC+GGG - Chr7:74777568-74777587 None:intergenic 45.0%
TCGTGATGACAGAATGCTCA+TGG - Chr7:74777538-74777557 None:intergenic 45.0%
TGACAGAATGCTCATGGTGA+TGG - Chr7:74777532-74777551 None:intergenic 45.0%
TGGCATGCTGTTAGAGAATG+AGG + Chr7:74779028-74779047 MsG0780040238.01.T01:CDS 45.0%
TGTTACGGACATGGAACCTA+AGG + Chr7:74779181-74779200 MsG0780040238.01.T01:CDS 45.0%
TTCCCGTTCCGTAACAGAAA+CGG + Chr7:74777563-74777582 MsG0780040238.01.T01:CDS 45.0%
TTTCAAACGTGCTCAACTCG+AGG + Chr7:74778881-74778900 MsG0780040238.01.T01:CDS 45.0%
! ACAGATGGACTTTAACTCCG+TGG - Chr7:74779603-74779622 None:intergenic 45.0%
! AGCTCTAACATCGGTACCTT+CGG - Chr7:74777772-74777791 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+AGG - Chr7:74778422-74778441 None:intergenic 45.0%
! CGGTGAAAAGTATACAAGCG+AGG - Chr7:74778486-74778505 None:intergenic 45.0%
! TCTTCTGGGTTTTTACCGTC+GGG - Chr7:74777711-74777730 None:intergenic 45.0%
!! AATGCTCATGGTGATGGTAG+TGG - Chr7:74777526-74777545 None:intergenic 45.0%
AAGCATGTCGACATGGAGCA+TGG - Chr7:74779274-74779293 None:intergenic 50.0%
CTTTCTCTGTTGGCGGTGAA+AGG + Chr7:74779066-74779085 MsG0780040238.01.T01:CDS 50.0%
GGACGACACAACAACACCAA+CGG - Chr7:74778949-74778968 None:intergenic 50.0%
TCAGCACAAGCATGTCGACA+TGG - Chr7:74779281-74779300 None:intergenic 50.0%
TGCTGATCGCTATCATGCCA+CGG + Chr7:74779583-74779602 MsG0780040238.01.T01:CDS 50.0%
TTCATTGCTCTCGCTTCCGA+AGG + Chr7:74777753-74777772 MsG0780040238.01.T01:CDS 50.0%
! CTTCTGGGTTTTTACCGTCG+GGG - Chr7:74777710-74777729 None:intergenic 50.0%
! TTAAGTATCGCGGCAGCATG+TGG + Chr7:74777886-74777905 MsG0780040238.01.T01:CDS 50.0%
!! ACAAGCTTGTTATGGCAGCC+CGG + Chr7:74779099-74779118 MsG0780040238.01.T01:CDS 50.0%
CACCGTCGGTGGTTACCAAT+GGG + Chr7:74777671-74777690 MsG0780040238.01.T01:CDS 55.0%
TCACCGTCGGTGGTTACCAA+TGG + Chr7:74777670-74777689 MsG0780040238.01.T01:CDS 55.0%
! TGCCCATTGGTAACCACCGA+CGG - Chr7:74777676-74777695 None:intergenic 55.0%
ACCGACGGTGAAAGTCTCGC+TGG - Chr7:74777661-74777680 None:intergenic 60.0%
AGCGAGACTTTCACCGTCGG+TGG + Chr7:74777660-74777679 MsG0780040238.01.T01:CDS 60.0%
GCCAGCGAGACTTTCACCGT+CGG + Chr7:74777657-74777676 MsG0780040238.01.T01:CDS 60.0%
!! CGAGGCGTCGTCCTTCCTTA+AGG + Chr7:74778899-74778918 MsG0780040238.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 74777507 74779694 74777507 ID=MsG0780040238.01;Name=MsG0780040238.01
Chr7 mRNA 74777507 74779694 74777507 ID=MsG0780040238.01.T01;Parent=MsG0780040238.01;Name=MsG0780040238.01.T01;_AED=0.46;_eAED=0.50;_QI=30|0.33|0.5|1|1|1|4|0|375
Chr7 exon 74777507 74777907 74777507 ID=MsG0780040238.01.T01:exon:14596;Parent=MsG0780040238.01.T01
Chr7 exon 74778036 74778122 74778036 ID=MsG0780040238.01.T01:exon:14597;Parent=MsG0780040238.01.T01
Chr7 exon 74778866 74779211 74778866 ID=MsG0780040238.01.T01:exon:14598;Parent=MsG0780040238.01.T01
Chr7 exon 74779371 74779694 74779371 ID=MsG0780040238.01.T01:exon:14599;Parent=MsG0780040238.01.T01
Chr7 five_prime_UTR 74777507 74777536 74777507 ID=MsG0780040238.01.T01:five_prime_utr;Parent=MsG0780040238.01.T01
Chr7 CDS 74777537 74777907 74777537 ID=MsG0780040238.01.T01:cds;Parent=MsG0780040238.01.T01
Chr7 CDS 74778036 74778122 74778036 ID=MsG0780040238.01.T01:cds;Parent=MsG0780040238.01.T01
Chr7 CDS 74778866 74779211 74778866 ID=MsG0780040238.01.T01:cds;Parent=MsG0780040238.01.T01
Chr7 CDS 74779371 74779694 74779371 ID=MsG0780040238.01.T01:cds;Parent=MsG0780040238.01.T01
Gene Sequence

>MsG0780040238.01.T01

ATGAGCATTCTGTCATCACGAACAAGTTCCCGTTCCGTAACAGAAACGGTAAACGGTTCACACAAGTTCGTAATCAAAGGCTACTCACTTGCTAAAGGAATGGGAGTTGGTAAACACATAGCCAGCGAGACTTTCACCGTCGGTGGTTACCAATGGGCAATTTACTTCTACCCCGACGGTAAAAACCCAGAAGATAATTCTGCTTATGTTTCTGTTTTCATTGCTCTCGCTTCCGAAGGTACCGATGTTAGAGCTCTTTTTGAACTCACTTTGCTTGATCAGAGTCCTAATGGCAAACATAAAGTTCATAGTCATTTTGATCGTTCTCTTGAGAGTGGTCCTTATACTCTTAAGTATCGCGGCAGCATGTGTCCGTACAAAATTGAGATGTGGAGGTTGATTTCAACTCAGAGTGAAAGTTTATCCCAACTAGCTTTAGTCTATGTTTTGTGTGGGTGGGGGTATAAGCGGTTTTTCAAACGTGCTCAACTCGAGGCGTCGTCCTTCCTTAAGGATGACTGTTTGAAGATAAACTGCACCGTTGGTGTTGTTGTGTCGTCCATAGATTGCTCTAAATTGACCACCATACATGTTCCTGAATCTGACATTGGATCTCATTTTGGCATGCTGTTAGAGAATGAGGAAGGATCTGATGTTACTTTCTCTGTTGGCGGTGAAAGGTTTCATGCACACAAGCTTGTTATGGCAGCCCGGTCAACTGCATTTGAAACTGAATTTTTCAATAGTATGGAGGAAGATGACCGTGATGTAGTTGTTACGGACATGGAACCTAAGGTTTTCAAGGCTTTGCTTCATTTTATTTATCGAGACACTCTTATAGAAGATGAAGATTTCTTCATGTCAAGTTCATCGTTCCTGCCTTCAATATCTGAAACATTTGCAGCAAAATTATTAGCTGCTGCGGAAAAGTATGATTTGCCTAGACTTAAGTTGATGTGCGAGTCTGTACTTTGCAAAGATATATCTATAGATTCTGTTGCCTATATTCTGGCTCTTGCTGATCGCTATCATGCCACGGAGTTAAAGTCCATCTGTCTACAATTTTCTGCTGAAAACCTTGTTGGTGAGTTTGTTTATTTCCCACAAAAGTATAGTCAGCTACTTTGA
Protein sequence

>MsG0780040238.01.T01

MSILSSRTSSRSVTETVNGSHKFVIKGYSLAKGMGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSPNGKHKVHSHFDRSLESGPYTLKYRGSMCPYKIEMWRLISTQSESLSQLALVYVLCGWGYKRFFKRAQLEASSFLKDDCLKINCTVGVVVSSIDCSKLTTIHVPESDIGSHFGMLLENEEGSDVTFSVGGERFHAHKLVMAARSTAFETEFFNSMEEDDRDVVVTDMEPKVFKALLHFIYRDTLIEDEDFFMSSSSFLPSISETFAAKLLAAAEKYDLPRLKLMCESVLCKDISIDSVAYILALADRYHATELKSICLQFSAENLVGEFVYFPQKYSQLL*