AlfalfaGEDB | MsG0780040366.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040366.01

KEGG: -
GO: GO:0005634
PFAM: PF08711

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0780040366.01.T01	AFK48326.1	91.268	481	9	1	1	481	4	451	891
MsG0780040366.01.T02	AFK48326.1	91.268	481	9	1	1	481	4	451	891
MsG0780040366.01.T03	AFK48326.1	91.268	481	9	1	1	481	4	451	891

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040366.01.T01	Q9FHK9	43.513	501	193	12	3	481	4	436	2.15E-112	342
MsG0780040366.01.T02	Q9FHK9	43.513	501	193	12	3	481	4	436	2.15E-112	342
MsG0780040366.01.T03	Q9FHK9	43.513	501	193	12	3	481	4	436	2.15E-112	342

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0780040366.01.T01	I3T734	91.268	481	9	1	1	481	4	451	891
MsG0780040366.01.T02	I3T734	91.268	481	9	1	1	481	4	451	891
MsG0780040366.01.T03	I3T734	91.268	481	9	1	1	481	4	451	891

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TFs/TRs:

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Gene ID	Type	Classification
MsG0780040366.01.T02	TR	IWS1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0580024871.01	MsG0780040366.01	0.806695	7.260939e-50	3.966937e-47
MsG0780040144.01	MsG0780040366.01	0.827938	1.186574e-54	1.162326e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040366.01.T01	MTR_7g089140	90.229	481	10	1	1	481	4	447	0.0	879
MsG0780040366.01.T01	MTR_7g089140	90.229	481	10	1	1	481	1	444	0.0	878
MsG0780040366.01.T01	MTR_7g089140	85.484	310	8	1	1	310	4	276	0.0	512
MsG0780040366.01.T01	MTR_7g089140	85.484	310	8	1	1	310	1	273	0.0	512
MsG0780040366.01.T01	MTR_3g095380	33.175	211	120	6	6	208	3	200	6.13e-23	99.8
MsG0780040366.01.T01	MTR_3g095380	33.175	211	120	6	6	208	3	200	1.01e-22	99.8
MsG0780040366.01.T02	MTR_7g089140	90.229	481	10	1	1	481	4	447	0.0	879
MsG0780040366.01.T02	MTR_7g089140	90.229	481	10	1	1	481	1	444	0.0	878
MsG0780040366.01.T02	MTR_7g089140	85.484	310	8	1	1	310	4	276	0.0	512
MsG0780040366.01.T02	MTR_7g089140	85.484	310	8	1	1	310	1	273	0.0	512

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040366.01.T01	AT5G05140	43.513	501	193	12	3	481	4	436	2.19e-113	342
MsG0780040366.01.T01	AT3G10820	38.936	470	202	9	3	471	7	392	2.95e-82	260
MsG0780040366.01.T01	AT3G10820	38.936	470	202	9	3	471	7	392	4.55e-80	260
MsG0780040366.01.T01	AT5G09850	30.769	221	113	5	6	208	3	201	8.87e-22	97.1
MsG0780040366.01.T01	AT5G09850	30.769	221	113	5	6	208	3	201	8.87e-22	97.1
MsG0780040366.01.T01	AT5G09850	30.769	221	113	5	6	208	3	201	8.87e-22	97.1
MsG0780040366.01.T01	AT5G09850	30.769	221	113	5	6	208	3	201	8.87e-22	97.1
MsG0780040366.01.T01	AT5G09850	30.769	221	113	5	6	208	3	201	1.82e-21	95.9
MsG0780040366.01.T02	AT5G05140	43.513	501	193	12	3	481	4	436	2.19e-113	342
MsG0780040366.01.T02	AT3G10820	38.936	470	202	9	3	471	7	392	2.95e-82	260

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Find 16 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGTTACAATCTACAT+AGG	0.571213	7:-76538175	MsG0780040366.01.T02:five_prime_UTR
AAAGTCAAAACTCAACCAAA+AGG	0.516610	7:-76538358	MsG0780040366.01.T03:intron
AATGTTGCACTATGATGGTA+TGG	0.604480	7:+76538214	None:intergenic
AATTTAAATTTGATATTCTG+GGG	0.554432	7:+76537760	None:intergenic
AATTTGATTGGATCAATGTT+CGG	0.450967	7:+76537798	None:intergenic
ACTTTGATCGAAACACAATT+TGG	0.284098	7:+76538376	None:intergenic
CCCATTTAGGAAAATTTGAT+TGG	0.316344	7:+76537786	None:intergenic
GATCGAAACACAATTTGGTT+TGG	0.387627	7:+76538381	None:intergenic
TAAAAGTACTTCTTTCTTGT+TGG	0.333050	7:-76538299	MsG0780040366.01.T03:intron
TAATTTAAATTTGATATTCT+GGG	0.360262	7:+76537759	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAGCAACAGAAAATG+TGG	+	Chr7:76534635-76534654	None:intergenic	30.0%
AAAGTCAAAACTCAACCAAA+AGG	-	Chr7:76534693-76534712	MsG0780040366.01.T01:three_prime_UTR	30.0%
AAGATTATACCTCATCTTCA+CGG	+	Chr7:76536004-76536023	None:intergenic	30.0%
ACTTTGATCGAAACACAATT+TGG	+	Chr7:76534678-76534697	None:intergenic	30.0%
AGTTATCAACAAGCTGAAAA+TGG	-	Chr7:76537848-76537867	MsG0780040366.01.T01:five_prime_UTR	30.0%
ATAAATGATCTTCCAAAGCA+AGG	-	Chr7:76538022-76538041	MsG0780040366.01.T02:intron	30.0%
ATGACGAAAGAATGATCAAA+AGG	+	Chr7:76535391-76535410	None:intergenic	30.0%
ATTGACACCAAACTTTAGAT+AGG	-	Chr7:76536678-76536697	MsG0780040366.01.T01:intron	30.0%
ATTGATGAGTACAATTATGC+TGG	-	Chr7:76536922-76536941	MsG0780040366.01.T01:intron	30.0%
CAAAGCTGTAATTGCTAATA+GGG	+	Chr7:76535896-76535915	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	76534602	76538471	76534602	ID=MsG0780040366.01;Name=MsG0780040366.01
Chr7	mRNA	76534602	76538023	76534602	ID=MsG0780040366.01.T01;Parent=MsG0780040366.01;Name=MsG0780040366.01.T01;_AED=0.23;_eAED=0.23;_QI=420\|1\|0.88\|1\|0.87\|0.77\|9\|357\|481
Chr7	exon	76537757	76538023	76537757	ID=MsG0780040366.01.T01:exon:14619;Parent=MsG0780040366.01.T01
Chr7	five_prime_UTR	76537757	76538023	76537757	ID=MsG0780040366.01.T01:five_prime_utr;Parent=MsG0780040366.01.T01
Chr7	five_prime_UTR	76537498	76537650	76537498	ID=MsG0780040366.01.T01:five_prime_utr;Parent=MsG0780040366.01.T01
Chr7	CDS	76537060	76537497	76537060	ID=MsG0780040366.01.T01:cds;Parent=MsG0780040366.01.T01
Chr7	CDS	76536771	76536839	76536771	ID=MsG0780040366.01.T01:cds;Parent=MsG0780040366.01.T01
Chr7	CDS	76536580	76536662	76536580	ID=MsG0780040366.01.T01:cds;Parent=MsG0780040366.01.T01
Chr7	CDS	76536184	76536242	76536184	ID=MsG0780040366.01.T01:cds;Parent=MsG0780040366.01.T01
Chr7	CDS	76535792	76536070	76535792	ID=MsG0780040366.01.T01:cds;Parent=MsG0780040366.01.T01
Chr7	CDS	76535366	76535676	76535366	ID=MsG0780040366.01.T01:cds;Parent=MsG0780040366.01.T01
Chr7	CDS	76535204	76535285	76535204	ID=MsG0780040366.01.T01:cds;Parent=MsG0780040366.01.T01
Chr7	CDS	76534959	76535083	76534959	ID=MsG0780040366.01.T01:cds;Parent=MsG0780040366.01.T01
Chr7	three_prime_UTR	76534602	76534958	76534602	ID=MsG0780040366.01.T01:three_prime_utr;Parent=MsG0780040366.01.T01
Chr7	mRNA	76534602	76538314	76534602	ID=MsG0780040366.01.T02;Parent=MsG0780040366.01;Name=MsG0780040366.01.T02;_AED=0.24;_eAED=0.24;_QI=362\|1\|0.88\|1\|0.87\|0.77\|9\|357\|481
Chr7	exon	76538106	76538314	76538106	ID=MsG0780040366.01.T02:exon:14628;Parent=MsG0780040366.01.T02
Chr7	five_prime_UTR	76538106	76538314	76538106	ID=MsG0780040366.01.T02:five_prime_utr;Parent=MsG0780040366.01.T02
Chr7	five_prime_UTR	76537498	76537650	76537498	ID=MsG0780040366.01.T02:five_prime_utr;Parent=MsG0780040366.01.T02
Chr7	CDS	76537060	76537497	76537060	ID=MsG0780040366.01.T02:cds;Parent=MsG0780040366.01.T02
Chr7	CDS	76536771	76536839	76536771	ID=MsG0780040366.01.T02:cds;Parent=MsG0780040366.01.T02
Chr7	CDS	76536580	76536662	76536580	ID=MsG0780040366.01.T02:cds;Parent=MsG0780040366.01.T02
Chr7	CDS	76536184	76536242	76536184	ID=MsG0780040366.01.T02:cds;Parent=MsG0780040366.01.T02
Chr7	CDS	76535792	76536070	76535792	ID=MsG0780040366.01.T02:cds;Parent=MsG0780040366.01.T02
Chr7	CDS	76535366	76535676	76535366	ID=MsG0780040366.01.T02:cds;Parent=MsG0780040366.01.T02
Chr7	CDS	76535204	76535285	76535204	ID=MsG0780040366.01.T02:cds;Parent=MsG0780040366.01.T02
Chr7	CDS	76534959	76535083	76534959	ID=MsG0780040366.01.T02:cds;Parent=MsG0780040366.01.T02
Chr7	three_prime_UTR	76534602	76534958	76534602	ID=MsG0780040366.01.T02:three_prime_utr;Parent=MsG0780040366.01.T02
Chr7	mRNA	76534602	76538471	76534602	ID=MsG0780040366.01.T03;Parent=MsG0780040366.01;Name=MsG0780040366.01.T03;_AED=0.25;_eAED=0.25;_QI=266\|1\|0.88\|1\|0.87\|0.77\|9\|357\|481
Chr7	exon	76538359	76538471	76538359	ID=MsG0780040366.01.T03:exon:14629;Parent=MsG0780040366.01.T03
Chr7	five_prime_UTR	76538359	76538471	76538359	ID=MsG0780040366.01.T03:five_prime_utr;Parent=MsG0780040366.01.T03
Chr7	five_prime_UTR	76537498	76537650	76537498	ID=MsG0780040366.01.T03:five_prime_utr;Parent=MsG0780040366.01.T03
Chr7	CDS	76537060	76537497	76537060	ID=MsG0780040366.01.T03:cds;Parent=MsG0780040366.01.T03
Chr7	CDS	76536771	76536839	76536771	ID=MsG0780040366.01.T03:cds;Parent=MsG0780040366.01.T03
Chr7	CDS	76536580	76536662	76536580	ID=MsG0780040366.01.T03:cds;Parent=MsG0780040366.01.T03
Chr7	CDS	76536184	76536242	76536184	ID=MsG0780040366.01.T03:cds;Parent=MsG0780040366.01.T03
Chr7	CDS	76535792	76536070	76535792	ID=MsG0780040366.01.T03:cds;Parent=MsG0780040366.01.T03
Chr7	CDS	76535366	76535676	76535366	ID=MsG0780040366.01.T03:cds;Parent=MsG0780040366.01.T03
Chr7	CDS	76535204	76535285	76535204	ID=MsG0780040366.01.T03:cds;Parent=MsG0780040366.01.T03
Chr7	CDS	76534959	76535083	76534959	ID=MsG0780040366.01.T03:cds;Parent=MsG0780040366.01.T03
Chr7	three_prime_UTR	76534602	76534958	76534602	ID=MsG0780040366.01.T03:three_prime_utr;Parent=MsG0780040366.01.T03

Gene Sequence

>MsG0780040366.01.T03

ATGAAGTCAGGGTCACTTGATCAGTGGAGGAGTTACTTTCGTTCATCGAATTCGGATATTTTCGATATAATTGACCATGCAATTGTTGTTGCTGCTTCTGATTGTCCAAAGGAGTTTAAGTCTAGGAGAGATGGTATTGCTGAGAGATTGTTTTCTGTTATGCTGAATCGTTGTAAGGGGTGTGAGAAGGTTGAAATATCTGTGCCTGATGATGATAATGGTGATGAACTTTGCAAGAGAAGTTCTGTTAGAGAGGGTGCTAGCAAAGAGAGCAAGGTGGATTGCAGTAGGGAAGAAAATGGAGTGATGGATGCTAACCCTATTAGCAATTACAGCTTTGGAGAAGCTGAAGCTTTAACTGATGAACTTGAAGAGCAATCACAACTTGCTGCTGAGGTTTTGAGGATTAAAGAGATTCTCAATAACCGTGAAGATGAGTCTGACTCGGTGCTGTTTGAGTCTCTGAGGAGGCTTCAACTGATGCAACTCTCTGTCGATCTTCTGAAGTCAACTGAGATTGGAAAGGCTGTGAATCATCTAAGAAAGCATGGATCGAAGGATATCCGTCAACTAGCACGAACTCTCATAGATGGATGGAAAGAGCTGGTCAATGCGTGGGTGAAGGCGTCAACAACCACACCTGTCGCAGCTTCAGAAGAAGGCACACCGGATTCCAGAAATCCATCTGTTGTTGAAAATGAAGAAGAGGAAGAAGGAGGACTCCCGTCACCTCCTTTGGATGAAGGGGCTTTCTTTGTTGCCCCAACTGGTACAATTGAACTCTCACAGGTATATATATGCTTGTCCTTTTTCCATTCTCAAACTTATATTTCAAAGGCTGTATATATGAAACTGAATTTGGGTTTTTCCTTGTGTTGTATATATCTGGACGATGTAAAGTTCTTCGATGGCATGGATGATGATGGAAATATTCGAAAGAGTGCACCATTCAACAAGAACCGTGACAACGGAAGAAAGCCAGCTCTTGGCTCTCAAACTAAGGACAAGAGGAATTTTCCGGCATCTAATGAAACAGCCGTCACTGCCAAGGACAACAAGAGTCAGCACATGAAGAAAAACGAGGCTGCGGTGAGGCCTAATAAACCAATGGCTGCTGATACTGGCCGTGCAAGGCCGCTAAACTCGAACATTCAGCGAAAAGCCAATGTGGAGCCGAAGATGCCTCCGAAAATCGAAAACAGTACTGTCCCTAAGAGGCCTCTCAATGCTCAGCAAGATAAGTCTAAGTGTTCAGATGATTCGGCTAAGCTTGAAGCCACTAAGCGGAGACTTCAAGAGAGTTATCAACAAGCTGAAAATGCCAAGAGGCAAAGGACAATACAAGTAATGGAAATAAATGATCTTCCAAAGCAAGGGTCTGTCCAACGGAATACACATTTCAAACCCGGAAATCACAATCGGCAATGGGGCAACGGTCGAAGATAG

>MsG0780040366.01.T01

>MsG0780040366.01.T02

Protein sequence

>MsG0780040366.01.T03

MKSGSLDQWRSYFRSSNSDIFDIIDHAIVVAASDCPKEFKSRRDGIAERLFSVMLNRCKGCEKVEISVPDDDNGDELCKRSSVREGASKESKVDCSREENGVMDANPISNYSFGEAEALTDELEEQSQLAAEVLRIKEILNNREDESDSVLFESLRRLQLMQLSVDLLKSTEIGKAVNHLRKHGSKDIRQLARTLIDGWKELVNAWVKASTTTPVAASEEGTPDSRNPSVVENEEEEEGGLPSPPLDEGAFFVAPTGTIELSQVYICLSFFHSQTYISKAVYMKLNLGFSLCCIYLDDVKFFDGMDDDGNIRKSAPFNKNRDNGRKPALGSQTKDKRNFPASNETAVTAKDNKSQHMKKNEAAVRPNKPMAADTGRARPLNSNIQRKANVEPKMPPKIENSTVPKRPLNAQQDKSKCSDDSAKLEATKRRLQESYQQAENAKRQRTIQVMEINDLPKQGSVQRNTHFKPGNHNRQWGNGRR*

>MsG0780040366.01.T01

>MsG0780040366.01.T02