AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040534.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040534.01.T01 MTR_7g092280 79.803 406 52 5 11 415 11 387 0.0 600
MsG0780040534.01.T01 MTR_1g052685 62.740 416 124 6 1 415 1 386 6.37e-169 478
MsG0780040534.01.T01 MTR_2g097980 45.771 402 173 7 1 400 1 359 1.66e-114 340
MsG0780040534.01.T01 MTR_8g099620 52.727 110 50 2 233 342 29 136 4.47e-31 116
MsG0780040534.01.T01 MTR_4g069140 28.736 261 171 6 103 357 89 340 4.83e-28 114
MsG0780040534.01.T01 MTR_1g021925 28.826 281 174 8 103 377 89 349 2.17e-27 112
MsG0780040534.01.T02 MTR_7g092280 79.803 406 52 5 11 415 11 387 0.0 600
MsG0780040534.01.T02 MTR_1g052685 62.740 416 124 6 1 415 1 386 6.37e-169 478
MsG0780040534.01.T02 MTR_2g097980 45.771 402 173 7 1 400 1 359 1.66e-114 340
MsG0780040534.01.T02 MTR_8g099620 52.727 110 50 2 233 342 29 136 4.47e-31 116
MsG0780040534.01.T02 MTR_4g069140 28.736 261 171 6 103 357 89 340 4.83e-28 114
MsG0780040534.01.T02 MTR_1g021925 28.826 281 174 8 103 377 89 349 2.17e-27 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040534.01.T01 AT3G57650 57.353 408 143 6 3 409 2 379 2.95e-162 462
MsG0780040534.01.T01 AT1G51260 47.980 396 174 5 1 394 1 366 1.49e-126 370
MsG0780040534.01.T01 AT1G75020 30.126 239 154 6 103 335 88 319 8.21e-25 105
MsG0780040534.01.T01 AT1G75020 30.126 239 154 6 103 335 88 319 8.21e-25 105
MsG0780040534.01.T01 AT3G18850 27.984 243 160 6 103 336 83 319 1.22e-24 104
MsG0780040534.01.T01 AT3G18850 27.984 243 160 6 103 336 83 319 1.22e-24 104
MsG0780040534.01.T01 AT3G18850 27.984 243 160 6 103 336 83 319 1.22e-24 104
MsG0780040534.01.T01 AT3G18850 27.984 243 160 6 103 336 83 319 1.22e-24 104
MsG0780040534.01.T01 AT3G18850 27.984 243 160 6 103 336 60 296 1.37e-24 104
MsG0780040534.01.T01 AT3G18850 31.288 163 104 3 194 352 43 201 2.85e-21 92.8
MsG0780040534.01.T02 AT3G57650 57.353 408 143 6 3 409 2 379 2.95e-162 462
MsG0780040534.01.T02 AT1G51260 47.980 396 174 5 1 394 1 366 1.49e-126 370
MsG0780040534.01.T02 AT1G75020 30.126 239 154 6 103 335 88 319 8.21e-25 105
MsG0780040534.01.T02 AT1G75020 30.126 239 154 6 103 335 88 319 8.21e-25 105
MsG0780040534.01.T02 AT3G18850 27.984 243 160 6 103 336 83 319 1.22e-24 104
MsG0780040534.01.T02 AT3G18850 27.984 243 160 6 103 336 83 319 1.22e-24 104
MsG0780040534.01.T02 AT3G18850 27.984 243 160 6 103 336 83 319 1.22e-24 104
MsG0780040534.01.T02 AT3G18850 27.984 243 160 6 103 336 83 319 1.22e-24 104
MsG0780040534.01.T02 AT3G18850 27.984 243 160 6 103 336 60 296 1.37e-24 104
MsG0780040534.01.T02 AT3G18850 31.288 163 104 3 194 352 43 201 2.85e-21 92.8

Find 26 sgRNAs with CRISPR-Local

Find 397 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCATCGTTAATTTCTTTC+AGG 0.126168 7:+78856348 MsG0780040534.01.T01:CDS
ATCATAAGTCCTTTGGGATT+TGG 0.279698 7:-78856040 None:intergenic
GGCCTGCTCTTCTTCACTTC+TGG 0.287712 7:+78856325 MsG0780040534.01.T01:CDS
ATTGAAATTTAATTCGTCTT+TGG 0.299137 7:-78856090 None:intergenic
CTTGAGAATCATAAGTCCTT+TGG 0.339745 7:-78856047 None:intergenic
TTGAGAATCATAAGTCCTTT+GGG 0.385874 7:-78856046 None:intergenic
TGAGAAAGAGAAAGAGAAAG+AGG 0.466184 7:-78856200 None:intergenic
CGACAGAGAGAGGGCGGGCA+TGG 0.467533 7:+78856270 MsG0780040534.01.T01:exon
AAACAACGGAGTTTCCGAAA+TGG 0.491358 7:-78856227 None:intergenic
GGCCAGAAGTGAAGAAGAGC+AGG 0.498243 7:-78856327 None:intergenic
AAGAGAAAGAGAAAGAGGGA+GGG 0.510049 7:-78856195 None:intergenic
GCTGCTGTCGTGGTTCCACT+AGG 0.513437 7:+78856304 MsG0780040534.01.T01:CDS
AAAGAGAAAGAGAAAGAGGG+AGG 0.520487 7:-78856196 None:intergenic
GAGAAAGAGAAAGAGAAAGA+GGG 0.530767 7:-78856199 None:intergenic
TATTGCAGCGGCTGCTGTCG+TGG 0.531773 7:+78856294 MsG0780040534.01.T01:CDS
GGAAACTCCGTTGTTTGTGT+CGG 0.555922 7:+78856234 MsG0780040534.01.T01:intron
CAGAGACGACAGAGAGAGGG+CGG 0.557501 7:+78856264 MsG0780040534.01.T01:intron
AGACAGAGACGACAGAGAGA+GGG 0.568553 7:+78856261 MsG0780040534.01.T01:intron
GGCGGGCATGGCTATTGCAG+CGG 0.575991 7:+78856282 MsG0780040534.01.T01:exon
AGAGACGACAGAGAGAGGGC+GGG 0.586031 7:+78856265 MsG0780040534.01.T01:intron
AAGACAGAGACGACAGAGAG+AGG 0.586633 7:+78856260 MsG0780040534.01.T01:intron
GTGAAGAAGAGCAGGCCTAG+TGG 0.591773 7:-78856319 None:intergenic
TCTCAAGTTGAAGAAGCTGA+AGG 0.616528 7:+78856063 MsG0780040534.01.T01:five_prime_UTR
CCTGAAAGAAATTAACGATG+AGG 0.652923 7:-78856348 None:intergenic
GATCGAAAACCAAATCCCAA+AGG 0.692748 7:+78856031 MsG0780040534.01.T02:five_prime_UTR
TCTTACTCCGACACAAACAA+CGG 0.694537 7:-78856241 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAGTGATTTTTATTA+CGG + Chr7:78860206-78860225 MsG0780040534.01.T01:intron 10.0%
!!! AAAAAATAGATTTTTTTTAG+AGG + Chr7:78860091-78860110 MsG0780040534.01.T01:intron 10.0%
!!! ATTAAGAAAAAAATAGATTT+TGG + Chr7:78860414-78860433 MsG0780040534.01.T01:intron 10.0%
!! AAAAAACATCTAAATGAAAA+AGG - Chr7:78862364-78862383 None:intergenic 15.0%
!! AAAAACATCTAAATGAAAAA+GGG - Chr7:78862363-78862382 None:intergenic 15.0%
!! AAGTGCAAATAATAATAAAA+AGG - Chr7:78857165-78857184 None:intergenic 15.0%
!! AATAATAATAAAAAGGATTC+CGG - Chr7:78857158-78857177 None:intergenic 15.0%
!! CAAAACAATAACAAATAAAT+AGG - Chr7:78862333-78862352 None:intergenic 15.0%
!! TAATTTGATATTATCATAAC+AGG + Chr7:78857772-78857791 MsG0780040534.01.T01:intron 15.0%
!! TAGATTATAATCACATATTA+GGG - Chr7:78860806-78860825 None:intergenic 15.0%
!! TTATTAACTATGTATTATTC+TGG + Chr7:78858295-78858314 MsG0780040534.01.T01:intron 15.0%
!! TTGAATACAACTATATAAAA+GGG - Chr7:78860166-78860185 None:intergenic 15.0%
!! TTTGAATACAACTATATAAA+AGG - Chr7:78860167-78860186 None:intergenic 15.0%
!!! AATTAAAGTATTATAACCTA+TGG + Chr7:78859660-78859679 MsG0780040534.01.T01:intron 15.0%
!!! AATTGATTTTTTTAGCAAAA+TGG + Chr7:78860474-78860493 MsG0780040534.01.T01:intron 15.0%
!!! ATAAGTGATGTATTTTTATA+CGG + Chr7:78861698-78861717 MsG0780040534.01.T01:intron 15.0%
!!! CAATTATTTTCATCAATATT+TGG + Chr7:78858379-78858398 MsG0780040534.01.T01:intron 15.0%
!!! GTTTCTTTTTTAATTAACTT+TGG - Chr7:78859795-78859814 None:intergenic 15.0%
!!! TAAACAAATTCTAATTTTTC+CGG + Chr7:78857136-78857155 MsG0780040534.01.T01:intron 15.0%
!!! TATATTTATTGTTCAACTTT+TGG + Chr7:78856670-78856689 MsG0780040534.01.T01:intron 15.0%
!!! TTACTGATTTTTATTCTTAT+GGG + Chr7:78858513-78858532 MsG0780040534.01.T01:intron 15.0%
!!! TTTTTTAATTAACTTTGGTT+GGG - Chr7:78859790-78859809 None:intergenic 15.0%
!! AAAAAAAATCCAAAACAAAC+AGG + Chr7:78860572-78860591 MsG0780040534.01.T01:intron 20.0%
!! AATAAGATATCTTTCAATAC+AGG - Chr7:78861213-78861232 None:intergenic 20.0%
!! AATTATCCAAATGAAAAACA+AGG - Chr7:78862904-78862923 None:intergenic 20.0%
!! ATAAGTTGTTTATCAAAACA+AGG + Chr7:78856901-78856920 MsG0780040534.01.T01:CDS 20.0%
!! ATAATGTAATTGTTCGTAAA+TGG + Chr7:78860909-78860928 MsG0780040534.01.T01:intron 20.0%
!! ATTATCCAAATGAAAAACAA+GGG - Chr7:78862903-78862922 None:intergenic 20.0%
!! ATTGAAATTTAATTCGTCTT+TGG - Chr7:78856093-78856112 None:intergenic 20.0%
!! ATTGCTATCCATATTAAAAA+TGG - Chr7:78861137-78861156 None:intergenic 20.0%
!! CAATACTAACATATTTAGAT+TGG - Chr7:78858982-78859001 None:intergenic 20.0%
!! CTAGATTATAATCACATATT+AGG - Chr7:78860807-78860826 None:intergenic 20.0%
!! CTTAAAAAAGCTATAACAAA+CGG - Chr7:78859944-78859963 None:intergenic 20.0%
!! CTTATTTATTGGATCATAAT+AGG + Chr7:78861247-78861266 MsG0780040534.01.T01:intron 20.0%
!! CTTCTCTTAACTATTAATTA+TGG + Chr7:78862032-78862051 MsG0780040534.01.T01:intron 20.0%
!! GAAAAATTCAAAATAGAATC+TGG - Chr7:78857572-78857591 None:intergenic 20.0%
!! GATTAATCTTATCTTTCATT+TGG + Chr7:78857356-78857375 MsG0780040534.01.T01:intron 20.0%
!! TAAAAATTCACTAGATACAA+CGG - Chr7:78858201-78858220 None:intergenic 20.0%
!! TAAATATGTTAGTATTGCTA+CGG + Chr7:78858985-78859004 MsG0780040534.01.T01:intron 20.0%
!! TCTAACTTGAACTTAAAAAT+TGG + Chr7:78856755-78856774 MsG0780040534.01.T01:intron 20.0%
!! TTAAAAAAGCTATAACAAAC+GGG - Chr7:78859943-78859962 None:intergenic 20.0%
!! TTAAATGATATATAAGCTAC+TGG - Chr7:78857743-78857762 None:intergenic 20.0%
!! TTAACCTCTAAATCAATATT+GGG - Chr7:78856700-78856719 None:intergenic 20.0%
!! TTTAACCTCTAAATCAATAT+TGG - Chr7:78856701-78856720 None:intergenic 20.0%
!!! AAACTTTCTATTGATAATCT+TGG + Chr7:78862852-78862871 MsG0780040534.01.T01:three_prime_UTR 20.0%
!!! CTTTTTTAATTAACTTTGGT+TGG - Chr7:78859791-78859810 None:intergenic 20.0%
!!! GATTCTATTTTGAATTTTTC+AGG + Chr7:78857572-78857591 MsG0780040534.01.T01:intron 20.0%
!!! GTATCTAGTGAATTTTTATT+TGG + Chr7:78858203-78858222 MsG0780040534.01.T01:intron 20.0%
!!! GTTACTGATTTTTATTCTTA+TGG + Chr7:78858512-78858531 MsG0780040534.01.T01:intron 20.0%
!!! GTTTAGTTTTCAACATAATT+AGG + Chr7:78862826-78862845 MsG0780040534.01.T01:three_prime_UTR 20.0%
!!! TCACATTTCTTCTTATTTAT+TGG + Chr7:78861236-78861255 MsG0780040534.01.T01:intron 20.0%
!!! TCAGTTGAATTTGATTTTTT+GGG + Chr7:78859145-78859164 MsG0780040534.01.T01:intron 20.0%
!!! TCTATTTTTTTCTTAATGCA+AGG - Chr7:78860411-78860430 None:intergenic 20.0%
!!! TGAAATAGATTTTCATTTTG+AGG + Chr7:78860447-78860466 MsG0780040534.01.T01:intron 20.0%
!!! TTATTTTAATCCGTAACAAA+CGG + Chr7:78860310-78860329 MsG0780040534.01.T01:intron 20.0%
!!! TTCAGTTGAATTTGATTTTT+TGG + Chr7:78859144-78859163 MsG0780040534.01.T01:intron 20.0%
!!! TTCTAAAACTTGATTTTGAT+TGG - Chr7:78861486-78861505 None:intergenic 20.0%
!!! TTTTAATATGGATAGCAATT+AGG + Chr7:78861138-78861157 MsG0780040534.01.T01:intron 20.0%
! AATGTAGTGATTTCAAAATG+AGG - Chr7:78861764-78861783 None:intergenic 25.0%
! ACATATTTAGATTGGAACAA+TGG - Chr7:78858974-78858993 None:intergenic 25.0%
! AGACAAATAGAAATAGCTTT+AGG - Chr7:78860338-78860357 None:intergenic 25.0%
! AGCAAGAAGAAAAAATAAAG+AGG - Chr7:78857484-78857503 None:intergenic 25.0%
! ATAAAGACACTAACATACAT+AGG + Chr7:78859102-78859121 MsG0780040534.01.T01:intron 25.0%
! ATGTAGTGATTTCAAAATGA+GGG - Chr7:78861763-78861782 None:intergenic 25.0%
! ATTTCAGATTTGAATCAGTT+GGG - Chr7:78856532-78856551 None:intergenic 25.0%
! CAAAGTAACAAAATCTGTAA+GGG + Chr7:78859718-78859737 MsG0780040534.01.T01:intron 25.0%
! TAAAGAGTTAAGACATATCA+AGG - Chr7:78862305-78862324 None:intergenic 25.0%
! TACGAACAATTACATTATTC+AGG - Chr7:78860907-78860926 None:intergenic 25.0%
! TAGTAAACATGTATATCATC+AGG - Chr7:78856614-78856633 None:intergenic 25.0%
! TATGTGATTATAATCTAGCA+AGG + Chr7:78860809-78860828 MsG0780040534.01.T01:intron 25.0%
! TATTATCATAACAGGACAAA+AGG + Chr7:78857780-78857799 MsG0780040534.01.T01:intron 25.0%
! TTACAGTTCTATAGTTATAC+TGG - Chr7:78858334-78858353 None:intergenic 25.0%
! TTAGCAGTTTATTTGTTCAT+TGG + Chr7:78857334-78857353 MsG0780040534.01.T01:intron 25.0%
! TTATCAAAACAAGGCTTAAT+TGG + Chr7:78856910-78856929 MsG0780040534.01.T01:CDS 25.0%
!! CAACTTATCTAGTGAAATTT+TGG + Chr7:78858228-78858247 MsG0780040534.01.T01:intron 25.0%
!! GACAAATAGAAATAGCTTTA+GGG - Chr7:78860337-78860356 None:intergenic 25.0%
!! GATAGAAACAAAAGTATGTT+TGG - Chr7:78856419-78856438 None:intergenic 25.0%
!! TTATAATCTAGCAAGGTTTT+TGG + Chr7:78860816-78860835 MsG0780040534.01.T01:intron 25.0%
!!! ACTCTTTTTTCTTTTTTCAG+GGG + Chr7:78861332-78861351 MsG0780040534.01.T01:intron 25.0%
!!! ATACCATTTTTTTTTACCTC+CGG + Chr7:78862173-78862192 MsG0780040534.01.T01:intron 25.0%
!!! CACTCTTTTTTCTTTTTTCA+GGG + Chr7:78861331-78861350 MsG0780040534.01.T01:intron 25.0%
!!! CAGTTGAATTTGATTTTTTG+GGG + Chr7:78859146-78859165 MsG0780040534.01.T01:intron 25.0%
!!! CTCTTTTTTTATCTTGTCTT+AGG + Chr7:78856987-78857006 MsG0780040534.01.T01:intron 25.0%
!!! TAATGATTTTCTAGGAAAGA+TGG - Chr7:78857253-78857272 None:intergenic 25.0%
!!! TATTTTAATCCGTAACAAAC+GGG + Chr7:78860311-78860330 MsG0780040534.01.T01:intron 25.0%
!!! TCACTCTTTTTTCTTTTTTC+AGG + Chr7:78861330-78861349 MsG0780040534.01.T01:intron 25.0%
!!! TTTTTAAAAGCCGTAACAAA+CGG - Chr7:78860016-78860035 None:intergenic 25.0%
AAATAGGTTACAGACAAGTT+TGG + Chr7:78860987-78861006 MsG0780040534.01.T01:intron 30.0%
AACCAAAATCATGCATAGAT+AGG + Chr7:78862682-78862701 MsG0780040534.01.T01:three_prime_UTR 30.0%
AATAGGTTACAGACAAGTTT+GGG + Chr7:78860988-78861007 MsG0780040534.01.T01:intron 30.0%
ACATGTTTACTAGACTGTTT+GGG + Chr7:78856622-78856641 MsG0780040534.01.T01:intron 30.0%
ACTTCTTTACTCTTATGTGT+GGG + Chr7:78857805-78857824 MsG0780040534.01.T01:intron 30.0%
ATCACAGAAGTGATATTGAT+TGG + Chr7:78857621-78857640 MsG0780040534.01.T01:CDS 30.0%
CAAGTTTGGGTATATTTGAT+TGG + Chr7:78861001-78861020 MsG0780040534.01.T01:intron 30.0%
CATGTACCATAGGTTATTAA+GGG - Chr7:78860598-78860617 None:intergenic 30.0%
CCAAAGTAACAAAATCTGTA+AGG + Chr7:78859717-78859736 MsG0780040534.01.T01:intron 30.0%
GAATCGCAGATAAATAACAT+TGG - Chr7:78857881-78857900 None:intergenic 30.0%
GATGTGATCTCATATGTTAT+GGG + Chr7:78859461-78859480 MsG0780040534.01.T01:intron 30.0%
GATTTCAGATTTGAATCAGT+TGG - Chr7:78856533-78856552 None:intergenic 30.0%
GGCAATCAATATACAAGAAA+AGG - Chr7:78857551-78857570 None:intergenic 30.0%
GGCTGTTGTATAATAAGTTT+CGG + Chr7:78857826-78857845 MsG0780040534.01.T01:intron 30.0%
GTATTTCAAAGATACAGTAC+AGG - Chr7:78858866-78858885 None:intergenic 30.0%
TAACAAAATCTGTAAGGGAT+AGG + Chr7:78859723-78859742 MsG0780040534.01.T01:intron 30.0%
TAACCTATGGTACATGAATA+AGG + Chr7:78859673-78859692 MsG0780040534.01.T01:intron 30.0%
TAAGAATTGAAGACATACCA+CGG - Chr7:78862785-78862804 None:intergenic 30.0%
TACATGTTTACTAGACTGTT+TGG + Chr7:78856621-78856640 MsG0780040534.01.T01:intron 30.0%
TATATTTCCAGTCAGGTATA+CGG + Chr7:78858653-78858672 MsG0780040534.01.T01:intron 30.0%
TCATCATTATATTTCCAGTC+AGG + Chr7:78858646-78858665 MsG0780040534.01.T01:intron 30.0%
TCATGTACCATAGGTTATTA+AGG - Chr7:78860599-78860618 None:intergenic 30.0%
TGCTATTAGCTACAAAAGAT+AGG - Chr7:78856865-78856884 None:intergenic 30.0%
TGTCTGTACCTGATAAAATA+CGG - Chr7:78861545-78861564 None:intergenic 30.0%
TTGAGAATCATAAGTCCTTT+GGG - Chr7:78856049-78856068 None:intergenic 30.0%
! AAATCTGAAATCACCCAATT+GGG + Chr7:78856541-78856560 MsG0780040534.01.T01:intron 30.0%
! AACTTGTTTGGCTTATTGAT+TGG + Chr7:78857093-78857112 MsG0780040534.01.T01:CDS 30.0%
! AATTCAGATTGGTTATCTTG+TGG + Chr7:78859031-78859050 MsG0780040534.01.T01:intron 30.0%
! AGCATTTTTCCTAAGGTTTA+AGG + Chr7:78861105-78861124 MsG0780040534.01.T01:intron 30.0%
! AGTCTTGATTTTATTCTCAC+AGG + Chr7:78862550-78862569 MsG0780040534.01.T01:CDS 30.0%
! ATCATGCATAGATAGGATTT+TGG + Chr7:78862689-78862708 MsG0780040534.01.T01:three_prime_UTR 30.0%
! ATCCTATCTATGCATGATTT+TGG - Chr7:78862687-78862706 None:intergenic 30.0%
! ATCTTTCATTTGGAACTTTC+TGG + Chr7:78857366-78857385 MsG0780040534.01.T01:intron 30.0%
! CTCTTTCTCATTTTCCATTT+CGG + Chr7:78856213-78856232 MsG0780040534.01.T01:intron 30.0%
! CTTTTGTTAACCTATGCATT+TGG + Chr7:78857441-78857460 MsG0780040534.01.T01:intron 30.0%
! GATCTGATTTTCATTCACTT+GGG - Chr7:78860865-78860884 None:intergenic 30.0%
! GCAAACTAAAAGTAAGTTGA+AGG - Chr7:78856833-78856852 None:intergenic 30.0%
! TTATACTTCACCTTAGTTCT+AGG - Chr7:78858814-78858833 None:intergenic 30.0%
! TTGTTTGTCATTTATAGCCT+CGG - Chr7:78862636-78862655 None:intergenic 30.0%
! TTTCAATGTGTTTTCATCCT+TGG - Chr7:78858486-78858505 None:intergenic 30.0%
!! AAAAATATCTAAGGCGTTGA+AGG - Chr7:78861821-78861840 None:intergenic 30.0%
!! AACACCCAATATTGATTTAG+AGG + Chr7:78856693-78856712 MsG0780040534.01.T01:intron 30.0%
!! CCTTACAGATTTTGTTACTT+TGG - Chr7:78859720-78859739 None:intergenic 30.0%
!! GTACTGTATCTTTGAAATAC+TGG + Chr7:78858866-78858885 MsG0780040534.01.T01:intron 30.0%
!! TGCATTTTCAACTTTTGGTT+TGG + Chr7:78862505-78862524 MsG0780040534.01.T01:CDS 30.0%
!! TTCTTTCAGGTTTGTTTCTT+TGG + Chr7:78856361-78856380 MsG0780040534.01.T01:intron 30.0%
!! TTTACCTTTAAAATCTACCG+TGG + Chr7:78862765-78862784 MsG0780040534.01.T01:three_prime_UTR 30.0%
!!! AATGAAATGTTTTGAGTTCG+AGG + Chr7:78859076-78859095 MsG0780040534.01.T01:intron 30.0%
!!! GGCTAGTTTTAATGCTAATT+AGG - Chr7:78859765-78859784 None:intergenic 30.0%
!!! GGGTACATGTTTAACTTTTT+TGG + Chr7:78859166-78859185 MsG0780040534.01.T01:intron 30.0%
!!! GGTTGTTGCCATTTTTAATA+TGG + Chr7:78861126-78861145 MsG0780040534.01.T01:intron 30.0%
!!! TACCATTTTTTTTTACCTCC+GGG + Chr7:78862174-78862193 MsG0780040534.01.T01:intron 30.0%
!!! TTCATCCCTTGTTTTTCATT+TGG + Chr7:78862895-78862914 MsG0780040534.01.T01:three_prime_UTR 30.0%
AATGTACACTCTGCAGTTTA+GGG + Chr7:78858077-78858096 MsG0780040534.01.T01:intron 35.0%
AATTGTACAGAAGGATCAAC+CGG + Chr7:78857045-78857064 MsG0780040534.01.T01:CDS 35.0%
ACATCAGAGAGACAAAACAA+TGG - Chr7:78861179-78861198 None:intergenic 35.0%
ACTGGGTAAAGATCTAATTG+AGG - Chr7:78856571-78856590 None:intergenic 35.0%
ACTTTGTAGCAGTTTCAGAT+GGG + Chr7:78860943-78860962 MsG0780040534.01.T01:intron 35.0%
AGTATTTCAAAGCAAGTCAC+AGG - Chr7:78861311-78861330 None:intergenic 35.0%
AGTTCAAATAAGCGCATAAC+TGG - Chr7:78856589-78856608 None:intergenic 35.0%
ATACAGTACAGGAAGAAGTA+AGG - Chr7:78858855-78858874 None:intergenic 35.0%
ATAGCAATGAAGACCATTGT+AGG - Chr7:78862469-78862488 None:intergenic 35.0%
ATTTGAATCAGTTGGGTAGT+GGG - Chr7:78856525-78856544 None:intergenic 35.0%
CACTTCTTTACTCTTATGTG+TGG + Chr7:78857804-78857823 MsG0780040534.01.T01:intron 35.0%
CAGTAGATGCTAACATTGAA+TGG - Chr7:78858909-78858928 None:intergenic 35.0%
CATTAAAGAACTTCATGCAG+AGG - Chr7:78861995-78862014 None:intergenic 35.0%
CCATCAAACTAAAAGTTTCG+CGG - Chr7:78857415-78857434 None:intergenic 35.0%
CCTCATCGTTAATTTCTTTC+AGG + Chr7:78856348-78856367 MsG0780040534.01.T01:CDS 35.0%
CCTGAAAGAAATTAACGATG+AGG - Chr7:78856351-78856370 None:intergenic 35.0%
CTAGGAATCAAAACGTTTCT+AGG - Chr7:78858796-78858815 None:intergenic 35.0%
CTATGGTACATGAATAAGGA+AGG + Chr7:78859677-78859696 MsG0780040534.01.T01:intron 35.0%
CTTCCTTATTCATGTACCAT+AGG - Chr7:78859679-78859698 None:intergenic 35.0%
CTTCTACATATGCAGGTAAT+TGG + Chr7:78858413-78858432 MsG0780040534.01.T01:intron 35.0%
CTTGAGAATCATAAGTCCTT+TGG - Chr7:78856050-78856069 None:intergenic 35.0%
CTTGCGTTGAAAAAGTGAAA+AGG - Chr7:78857693-78857712 None:intergenic 35.0%
GAGAAAGAGAAAGAGAAAGA+GGG - Chr7:78856202-78856221 None:intergenic 35.0%
GCTAAAGGGTAAATTCAGAT+TGG + Chr7:78859020-78859039 MsG0780040534.01.T01:intron 35.0%
GGATGTGATCTCATATGTTA+TGG + Chr7:78859460-78859479 MsG0780040534.01.T01:intron 35.0%
GTATGTCTTCAATTCTTACG+TGG + Chr7:78862787-78862806 MsG0780040534.01.T01:three_prime_UTR 35.0%
GTCTGTACCTGATAAAATAC+GGG - Chr7:78861544-78861563 None:intergenic 35.0%
GTGGTGTAGAGATATATTTG+TGG + Chr7:78861960-78861979 MsG0780040534.01.T01:CDS 35.0%
GTTCAAATAAGCGCATAACT+GGG - Chr7:78856588-78856607 None:intergenic 35.0%
TAATTGAGGAGAACCCAATT+GGG - Chr7:78856557-78856576 None:intergenic 35.0%
TACTTTGTAGCAGTTTCAGA+TGG + Chr7:78860942-78860961 MsG0780040534.01.T01:intron 35.0%
TAGAGATATATTTGTGGCCA+AGG + Chr7:78861966-78861985 MsG0780040534.01.T01:CDS 35.0%
TCATAAGAGATACATGCTTG+TGG + Chr7:78858542-78858561 MsG0780040534.01.T01:intron 35.0%
TCATTGCTATCATCATGGAA+GGG + Chr7:78862479-78862498 MsG0780040534.01.T01:CDS 35.0%
TGAGAAAGAGAAAGAGAAAG+AGG - Chr7:78856203-78856222 None:intergenic 35.0%
TGATCCATCAATTTCATGTG+TGG + Chr7:78862391-78862410 MsG0780040534.01.T01:intron 35.0%
TGTCAAATTATTAGCTGCTC+AGG + Chr7:78858741-78858760 MsG0780040534.01.T01:CDS 35.0%
TGTCTGCTAGCAATTATATC+AGG + Chr7:78861271-78861290 MsG0780040534.01.T01:intron 35.0%
TTAATTAACTTTGGTTGGGC+TGG - Chr7:78859786-78859805 None:intergenic 35.0%
TTATTGTTGCGTAGCTGTTA+TGG + Chr7:78859415-78859434 MsG0780040534.01.T01:intron 35.0%
TTCATTGCTATCATCATGGA+AGG + Chr7:78862478-78862497 MsG0780040534.01.T01:CDS 35.0%
TTGCTAACTTCTACATATGC+AGG + Chr7:78858406-78858425 MsG0780040534.01.T01:intron 35.0%
TTGGAAGTTACATGTAACAC+TGG + Chr7:78858266-78858285 MsG0780040534.01.T01:intron 35.0%
TTTCGTACATCTCGTGTAAT+CGG + Chr7:78859308-78859327 MsG0780040534.01.T01:intron 35.0%
TTTGGATTCATCATCGACAT+GGG + Chr7:78856379-78856398 MsG0780040534.01.T01:intron 35.0%
TTTGTGATGCTTGCATCATA+AGG + Chr7:78859383-78859402 MsG0780040534.01.T01:intron 35.0%
! AGGACTGAATCTTCGTTTTA+GGG + Chr7:78859829-78859848 MsG0780040534.01.T01:intron 35.0%
! ATCAAAACGTTTCTAGGAAC+AGG - Chr7:78858790-78858809 None:intergenic 35.0%
! ATGATTTCCCTCTTCCATTT+TGG + Chr7:78858683-78858702 MsG0780040534.01.T01:CDS 35.0%
! CAAATCTGAAATCACCCAAT+TGG + Chr7:78856540-78856559 MsG0780040534.01.T01:intron 35.0%
! CATACCACGGTAGATTTTAA+AGG - Chr7:78862772-78862791 None:intergenic 35.0%
! CGATCTGATTTTCATTCACT+TGG - Chr7:78860866-78860885 None:intergenic 35.0%
! GTCTTCAAGCATTTTTCCTA+AGG + Chr7:78861098-78861117 MsG0780040534.01.T01:intron 35.0%
! GTTTTCTGAGTATCTTTTCC+TGG + Chr7:78858448-78858467 MsG0780040534.01.T01:intron 35.0%
! TAACTCAATTTTACCACCAC+AGG + Chr7:78861873-78861892 MsG0780040534.01.T01:intron 35.0%
! TATTAAGGGCCTGTTTGTTT+TGG - Chr7:78860584-78860603 None:intergenic 35.0%
! TGTTTGGCTTATTGATTGGT+GGG + Chr7:78857097-78857116 MsG0780040534.01.T01:CDS 35.0%
! TGTTTGTCATTTATAGCCTC+GGG - Chr7:78862635-78862654 None:intergenic 35.0%
! TTGTTTGGCTTATTGATTGG+TGG + Chr7:78857096-78857115 MsG0780040534.01.T01:CDS 35.0%
!! AATCTAGCAAGGTTTTTGGA+AGG + Chr7:78860820-78860839 MsG0780040534.01.T01:intron 35.0%
!! AGTGATATTGATTGGCTTGT+TGG + Chr7:78857629-78857648 MsG0780040534.01.T01:CDS 35.0%
!! AGTTTTGCATCCGTTTGTTA+CGG + Chr7:78860003-78860022 MsG0780040534.01.T01:intron 35.0%
!! ATATTGATTGGCTTGTTGGA+TGG + Chr7:78857633-78857652 MsG0780040534.01.T01:CDS 35.0%
!! ATCATAAGTCCTTTGGGATT+TGG - Chr7:78856043-78856062 None:intergenic 35.0%
!! ATTCAGTCCTGAAGGTATTT+AGG - Chr7:78859819-78859838 None:intergenic 35.0%
!! GATTTTGGTGAACTTGAAGT+TGG + Chr7:78862704-78862723 MsG0780040534.01.T01:three_prime_UTR 35.0%
!! GCTCAGGTGATTGTTTTATT+TGG + Chr7:78857662-78857681 MsG0780040534.01.T01:CDS 35.0%
!! TATTGATTGGCTTGTTGGAT+GGG + Chr7:78857634-78857653 MsG0780040534.01.T01:CDS 35.0%
!! TGCTTCTGAAATGTACATGT+GGG + Chr7:78859438-78859457 MsG0780040534.01.T01:intron 35.0%
!! TTCAGTCCTGAAGGTATTTA+GGG - Chr7:78859818-78859837 None:intergenic 35.0%
!! TTTGATGAAGAGTTCTGGAA+AGG + Chr7:78859484-78859503 MsG0780040534.01.T01:intron 35.0%
!!! ACCATTTTTTTTTACCTCCG+GGG + Chr7:78862175-78862194 MsG0780040534.01.T01:intron 35.0%
!!! CGCGAAACTTTTAGTTTGAT+GGG + Chr7:78857413-78857432 MsG0780040534.01.T01:CDS 35.0%
!!! CGTTTTGATTCCTAGAACTA+AGG + Chr7:78858801-78858820 MsG0780040534.01.T01:CDS 35.0%
!!! CTTTTTTCAGGGGTTTGTTT+CGG + Chr7:78861342-78861361 MsG0780040534.01.T01:intron 35.0%
!!! GAAAGCGCTAATGATTTTCT+AGG - Chr7:78857261-78857280 None:intergenic 35.0%
!!! TTGCTGTGTGTTAGTCTTTT+GGG + Chr7:78857499-78857518 MsG0780040534.01.T01:intron 35.0%
AAACAACGGAGTTTCCGAAA+TGG - Chr7:78856230-78856249 None:intergenic 40.0%
AAACGAAGATTCAGTCCTGA+AGG - Chr7:78859827-78859846 None:intergenic 40.0%
AAAGAGAAAGAGAAAGAGGG+AGG - Chr7:78856199-78856218 None:intergenic 40.0%
AACAGGCCCTTAATAACCTA+TGG + Chr7:78860589-78860608 MsG0780040534.01.T01:intron 40.0%
AACATGATCAAACAGCGTTC+AGG + Chr7:78857920-78857939 MsG0780040534.01.T01:intron 40.0%
AAGAGAAAGAGAAAGAGGGA+GGG - Chr7:78856198-78856217 None:intergenic 40.0%
AATAGTCCCACACAAGTTCA+TGG - Chr7:78861069-78861088 None:intergenic 40.0%
ACAAAGAGAGCCAACCAAAA+TGG - Chr7:78858700-78858719 None:intergenic 40.0%
AGAAACCCCTAAATACCTTC+AGG + Chr7:78859809-78859828 MsG0780040534.01.T01:intron 40.0%
AGCCACTGTTATGTCGTAAA+CGG - Chr7:78861398-78861417 None:intergenic 40.0%
AGTCACAGGAAAGAACAATC+AGG - Chr7:78861297-78861316 None:intergenic 40.0%
AGTCACAGTGAAGCATATAC+CGG - Chr7:78857995-78858014 None:intergenic 40.0%
ATAGTCCCACACAAGTTCAT+GGG - Chr7:78861068-78861087 None:intergenic 40.0%
ATCAATTTCATGTGTGGAGC+AGG + Chr7:78862397-78862416 MsG0780040534.01.T01:intron 40.0%
ATGGGTTTGATGAAGAGTTC+TGG + Chr7:78859479-78859498 MsG0780040534.01.T01:intron 40.0%
ATGTACACTCTGCAGTTTAG+GGG + Chr7:78858078-78858097 MsG0780040534.01.T01:intron 40.0%
ATTGTACAGAAGGATCAACC+GGG + Chr7:78857046-78857065 MsG0780040534.01.T01:CDS 40.0%
CTAATTGAGGAGAACCCAAT+TGG - Chr7:78856558-78856577 None:intergenic 40.0%
CTGTCGAAGAATTGTACAGA+AGG + Chr7:78857036-78857055 MsG0780040534.01.T01:CDS 40.0%
CTTGTGGATAACACATCTGT+TGG + Chr7:78859047-78859066 MsG0780040534.01.T01:intron 40.0%
CTTTGGATTCATCATCGACA+TGG + Chr7:78856378-78856397 MsG0780040534.01.T01:intron 40.0%
GAAATCGTCAAAGTTTCTGC+CGG + Chr7:78857973-78857992 MsG0780040534.01.T01:CDS 40.0%
GAATGTACACTCTGCAGTTT+AGG + Chr7:78858076-78858095 MsG0780040534.01.T01:intron 40.0%
GATCGAAAACCAAATCCCAA+AGG + Chr7:78856031-78856050 MsG0780040534.01.T02:five_prime_UTR 40.0%
GATTTGAATCAGTTGGGTAG+TGG - Chr7:78856526-78856545 None:intergenic 40.0%
GCAACGATTCATAGAACTCT+AGG + Chr7:78857211-78857230 MsG0780040534.01.T01:intron 40.0%
GCAGTGTTAAGTTCCTACAA+TGG + Chr7:78862453-78862472 MsG0780040534.01.T01:CDS 40.0%
GGTCTTCATTGCTATCATCA+TGG + Chr7:78862474-78862493 MsG0780040534.01.T01:CDS 40.0%
GTTACATGTAACTTCCAAGC+AGG - Chr7:78858264-78858283 None:intergenic 40.0%
GTTAGACAAACATGTAGCTG+AGG + Chr7:78862212-78862231 MsG0780040534.01.T01:CDS 40.0%
TAACCTATGCATTTGGCACT+GGG + Chr7:78857448-78857467 MsG0780040534.01.T01:intron 40.0%
TACATATGCAGGTAATTGGC+TGG + Chr7:78858417-78858436 MsG0780040534.01.T01:intron 40.0%
TATCATTGCAGCACAACTGT+GGG + Chr7:78859532-78859551 MsG0780040534.01.T01:intron 40.0%
TATGTTAGTATTGCTACGGC+TGG + Chr7:78858989-78859008 MsG0780040534.01.T01:intron 40.0%
TCTGTACAATTCTTCGACAG+CGG - Chr7:78857036-78857055 None:intergenic 40.0%
TCTTACTCCGACACAAACAA+CGG - Chr7:78856244-78856263 None:intergenic 40.0%
TGCTCCACACATGAAATTGA+TGG - Chr7:78862398-78862417 None:intergenic 40.0%
TGCTTGCATCATAAGGTTTC+TGG + Chr7:78859390-78859409 MsG0780040534.01.T01:intron 40.0%
TGGCAACAACCTTAAACCTT+AGG - Chr7:78861117-78861136 None:intergenic 40.0%
TGTAAGAGCCTTAGCATTGT+AGG - Chr7:78861442-78861461 None:intergenic 40.0%
TTAACCTATGCATTTGGCAC+TGG + Chr7:78857447-78857466 MsG0780040534.01.T01:intron 40.0%
TTATCCATGCCTGATCTACA+TGG - Chr7:78859583-78859602 None:intergenic 40.0%
TTCACTTGGGATAAAATGCC+TGG - Chr7:78860852-78860871 None:intergenic 40.0%
TTGATATGAACTTGCACCTG+TGG - Chr7:78861892-78861911 None:intergenic 40.0%
TTGGTTGTAACTTACCTGCT+TGG + Chr7:78858247-78858266 MsG0780040534.01.T01:intron 40.0%
TTTCAGATGGGTAGTTGCAA+GGG + Chr7:78860955-78860974 MsG0780040534.01.T01:intron 40.0%
! ATCTTTTCCTGGAGAGAAGT+TGG + Chr7:78858459-78858478 MsG0780040534.01.T01:intron 40.0%
! CAGGACTGAATCTTCGTTTT+AGG + Chr7:78859828-78859847 MsG0780040534.01.T01:intron 40.0%
! GGCGTTGCATTTTCAACTTT+TGG + Chr7:78862500-78862519 MsG0780040534.01.T01:CDS 40.0%
! TCTTTTCCTGGAGAGAAGTT+GGG + Chr7:78858460-78858479 MsG0780040534.01.T01:intron 40.0%
! TTCTCTGCCCGTATTTTATC+AGG + Chr7:78861534-78861553 MsG0780040534.01.T01:intron 40.0%
!! AATATCTAAGGCGTTGAAGG+AGG - Chr7:78861818-78861837 None:intergenic 40.0%
!! AGAGTTCTGGAAAGGAACAA+CGG + Chr7:78859492-78859511 MsG0780040534.01.T01:intron 40.0%
!! AGTCTTTTGGGTAGGAAAAC+TGG + Chr7:78857511-78857530 MsG0780040534.01.T01:intron 40.0%
!! GCTTCTGAAATGTACATGTG+GGG + Chr7:78859439-78859458 MsG0780040534.01.T01:intron 40.0%
!! GTGCTTCTGAAATGTACATG+TGG + Chr7:78859437-78859456 MsG0780040534.01.T01:intron 40.0%
!! GTTTTTGGAAGGTTAAAGCC+AGG + Chr7:78860831-78860850 MsG0780040534.01.T01:intron 40.0%
!! TCAGTCCTGAAGGTATTTAG+GGG - Chr7:78859817-78859836 None:intergenic 40.0%
!! TCTCAAGTTGAAGAAGCTGA+AGG + Chr7:78856063-78856082 MsG0780040534.01.T01:five_prime_UTR 40.0%
!! TTTCCCTCTTCCATTTTGGT+TGG + Chr7:78858687-78858706 MsG0780040534.01.T01:CDS 40.0%
!! TTTGGTTTGGCAGTTGTTAC+TGG + Chr7:78862518-78862537 MsG0780040534.01.T01:CDS 40.0%
!!! CCGCGAAACTTTTAGTTTGA+TGG + Chr7:78857412-78857431 MsG0780040534.01.T01:CDS 40.0%
!!! CTTGCTGTGTGTTAGTCTTT+TGG + Chr7:78857498-78857517 MsG0780040534.01.T01:intron 40.0%
!!! GATTTGGTTTTCGATCACAG+TGG - Chr7:78856027-78856046 None:intergenic 40.0%
!!! GGTTGTTCCTCCTTGTTTTT+CGG - Chr7:78862614-78862633 None:intergenic 40.0%
!!! TGTGTGTTAGTCTTTTGGGT+AGG + Chr7:78857503-78857522 MsG0780040534.01.T01:intron 40.0%
ACTGTTATGTCGTAAACGGC+AGG - Chr7:78861394-78861413 None:intergenic 45.0%
ACTTCATGCAGAGGTTACCT+TGG - Chr7:78861986-78862005 None:intergenic 45.0%
AGAGCCAACCAAAATGGAAG+AGG - Chr7:78858694-78858713 None:intergenic 45.0%
ATACTGGAAGCTATGCTGCA+TGG + Chr7:78858882-78858901 MsG0780040534.01.T01:intron 45.0%
ATATGAACTTGCACCTGTGG+TGG - Chr7:78861889-78861908 None:intergenic 45.0%
ATTTCCAGTCAGGTATACGG+CGG + Chr7:78858656-78858675 MsG0780040534.01.T01:intron 45.0%
CAATGCTAAGGCTCTTACAG+CGG + Chr7:78861443-78861462 MsG0780040534.01.T01:CDS 45.0%
CATATCTGCACTGTGTGTGT+GGG - Chr7:78861637-78861656 None:intergenic 45.0%
CATCTCGTGTAATCGGTTAC+TGG + Chr7:78859315-78859334 MsG0780040534.01.T01:intron 45.0%
CTCTTCCCATGAACTTGTGT+GGG + Chr7:78861060-78861079 MsG0780040534.01.T01:intron 45.0%
GAGCCAACCAAAATGGAAGA+GGG - Chr7:78858693-78858712 None:intergenic 45.0%
GCAACAGCTTCATCTGTTTC+TGG - Chr7:78861937-78861956 None:intergenic 45.0%
GCCCCGGAGGTAAAAAAAAA+TGG - Chr7:78862179-78862198 None:intergenic 45.0%
GCTCCAGGTCGAAATATACA+CGG + Chr7:78857388-78857407 MsG0780040534.01.T01:intron 45.0%
GGAAACTCCGTTGTTTGTGT+CGG + Chr7:78856234-78856253 MsG0780040534.01.T01:intron 45.0%
GTATCATTGCAGCACAACTG+TGG + Chr7:78859531-78859550 MsG0780040534.01.T01:intron 45.0%
GTTTCAGATGGGTAGTTGCA+AGG + Chr7:78860954-78860973 MsG0780040534.01.T01:intron 45.0%
TCATATCTGCACTGTGTGTG+TGG - Chr7:78861638-78861657 None:intergenic 45.0%
TCGACCAATAAAGCCTCTTG+CGG + Chr7:78862269-78862288 MsG0780040534.01.T01:CDS 45.0%
TCTCTTCCCATGAACTTGTG+TGG + Chr7:78861059-78861078 MsG0780040534.01.T01:intron 45.0%
TGCAAAGCCGAAAAACAAGG+AGG + Chr7:78862604-78862623 MsG0780040534.01.T01:CDS 45.0%
TGTGGGAAAGACTACAGTCA+AGG + Chr7:78859549-78859568 MsG0780040534.01.T01:intron 45.0%
TTCAGATGGGTAGTTGCAAG+GGG + Chr7:78860956-78860975 MsG0780040534.01.T01:intron 45.0%
TTTCAGTGATCAAGAGCTGC+AGG + Chr7:78862239-78862258 MsG0780040534.01.T01:CDS 45.0%
! AAAGGAACAACGGGCTTTGA+TGG + Chr7:78859502-78859521 MsG0780040534.01.T01:intron 45.0%
! AAGGAACAACGGGCTTTGAT+GGG + Chr7:78859503-78859522 MsG0780040534.01.T01:intron 45.0%
! AGGTAATTGGCTGGTCAATG+TGG + Chr7:78858426-78858445 MsG0780040534.01.T01:intron 45.0%
! CTAACCGCAAGAGGCTTTAT+TGG - Chr7:78862276-78862295 None:intergenic 45.0%
! GGTTTTCGATCACAGTGGAA+TGG - Chr7:78856022-78856041 None:intergenic 45.0%
! GTTTTGCGTCCATGTAGATC+AGG + Chr7:78859571-78859590 MsG0780040534.01.T01:intron 45.0%
! TGCCGTTTACGACATAACAG+TGG + Chr7:78861393-78861412 MsG0780040534.01.T01:CDS 45.0%
! TGGTTGGCTCTCTTTGTAGA+AGG + Chr7:78858703-78858722 MsG0780040534.01.T01:CDS 45.0%
! TGTTGTGGCTGGAACTTGTT+TGG + Chr7:78857081-78857100 MsG0780040534.01.T01:CDS 45.0%
!! AGGAAGTATCTAACCGCAAG+AGG - Chr7:78862285-78862304 None:intergenic 45.0%
!! ATTTGGAACTTTCTGGCTCC+AGG + Chr7:78857373-78857392 MsG0780040534.01.T01:intron 45.0%
!! CTTGTTTTTCGGCTTTGCAG+GGG - Chr7:78862603-78862622 None:intergenic 45.0%
!! GAGTTCTGGAAAGGAACAAC+GGG + Chr7:78859493-78859512 MsG0780040534.01.T01:intron 45.0%
!!! CCTTGTTTTTCGGCTTTGCA+GGG - Chr7:78862604-78862623 None:intergenic 45.0%
!!! TCCTTGTTTTTCGGCTTTGC+AGG - Chr7:78862605-78862624 None:intergenic 45.0%
!!! TGTTGGATGGGTTTTAGCTC+AGG + Chr7:78857646-78857665 MsG0780040534.01.T01:CDS 45.0%
!! GAAATAAATAAATAAATAAA+AGG - Chr7:78859260-78859279 None:intergenic 5.0%
!! TATATAAATAAAAATATCTA+AGG - Chr7:78861830-78861849 None:intergenic 5.0%
!! TTATAATACTTTAATTATTT+AGG - Chr7:78859656-78859675 None:intergenic 5.0%
AAACAAGGAGGAACAACCCG+AGG + Chr7:78862616-78862635 MsG0780040534.01.T01:CDS 50.0%
AACAATGCATCCTGATGCCC+CGG - Chr7:78862195-78862214 None:intergenic 50.0%
AAGACAGAGACGACAGAGAG+AGG + Chr7:78856260-78856279 MsG0780040534.01.T01:intron 50.0%
AGACAGAGACGACAGAGAGA+GGG + Chr7:78856261-78856280 MsG0780040534.01.T01:intron 50.0%
AGCCTTAGCATTGTAGGAGC+AGG - Chr7:78861436-78861455 None:intergenic 50.0%
AGCTCTATCTTGGGGCTTTG+TGG + Chr7:78862421-78862440 MsG0780040534.01.T01:CDS 50.0%
AGTATTGCTACGGCTGGCAA+GGG + Chr7:78858995-78859014 MsG0780040534.01.T01:intron 50.0%
CACCTGCTCCTACAATGCTA+AGG + Chr7:78861431-78861450 MsG0780040534.01.T01:CDS 50.0%
CAGATGAAGCTGTTGCTCAG+TGG + Chr7:78861941-78861960 MsG0780040534.01.T01:CDS 50.0%
CAGGAATATGCAACCTCCAC+TGG + Chr7:78858760-78858779 MsG0780040534.01.T01:CDS 50.0%
CCCTCCCTGCAGCAAAAAAT+GGG - Chr7:78859200-78859219 None:intergenic 50.0%
CCCTGCAAAGCCGAAAAACA+AGG + Chr7:78862601-78862620 MsG0780040534.01.T01:CDS 50.0%
CCCTGCAGCAAAAAATGGGA+GGG - Chr7:78859196-78859215 None:intergenic 50.0%
CTTACAGCGGAAACGTTCAG+TGG + Chr7:78861456-78861475 MsG0780040534.01.T01:CDS 50.0%
GGTCCGTGTATATTTCGACC+TGG - Chr7:78857394-78857413 None:intergenic 50.0%
GTAGGAGCAGGTGAACTCTT+GGG - Chr7:78861424-78861443 None:intergenic 50.0%
TAGGAGCAGGTGAACTCTTG+GGG - Chr7:78861423-78861442 None:intergenic 50.0%
TAGTATTGCTACGGCTGGCA+AGG + Chr7:78858994-78859013 MsG0780040534.01.T01:intron 50.0%
TCCCTGCAGCAAAAAATGGG+AGG - Chr7:78859197-78859216 None:intergenic 50.0%
TCTAGGAACAGGCAATCCAG+TGG - Chr7:78858779-78858798 None:intergenic 50.0%
TGTAGGAGCAGGTGAACTCT+TGG - Chr7:78861425-78861444 None:intergenic 50.0%
! GAGCAGGTAGCTCTATCTTG+GGG + Chr7:78862413-78862432 MsG0780040534.01.T01:intron 50.0%
! GCAAGGGGCTTGGTAGAAAT+AGG + Chr7:78860971-78860990 MsG0780040534.01.T01:intron 50.0%
! GGAGCAGGTAGCTCTATCTT+GGG + Chr7:78862412-78862431 MsG0780040534.01.T01:intron 50.0%
! TGGAGCAGGTAGCTCTATCT+TGG + Chr7:78862411-78862430 MsG0780040534.01.T01:intron 50.0%
! TGGCTTATTGATTGGTGGGC+TGG + Chr7:78857101-78857120 MsG0780040534.01.T01:CDS 50.0%
!! AAACAGCGTTCAGGTTGCCT+TGG + Chr7:78857929-78857948 MsG0780040534.01.T01:intron 50.0%
!! AGGCGTTGAAGGAGGAAGAT+TGG - Chr7:78861810-78861829 None:intergenic 50.0%
!! GCTTTAGGGCCCGTTTGTTA+CGG - Chr7:78860323-78860342 None:intergenic 50.0%
!! TCACTGCTAGAGTACTGCCA+AGG - Chr7:78857949-78857968 None:intergenic 50.0%
!! TGATTGGTGGGCTGGAGTTA+AGG + Chr7:78857109-78857128 MsG0780040534.01.T01:CDS 50.0%
!!! CCATTTTTTGCTGCAGGGAG+GGG + Chr7:78859198-78859217 MsG0780040534.01.T01:intron 50.0%
!!! CCCATTTTTTGCTGCAGGGA+GGG + Chr7:78859197-78859216 MsG0780040534.01.T01:intron 50.0%
!!! CCCTCCCATTTTTTGCTGCA+GGG + Chr7:78859193-78859212 MsG0780040534.01.T01:intron 50.0%
!!! TCCCATTTTTTGCTGCAGGG+AGG + Chr7:78859196-78859215 MsG0780040534.01.T01:intron 50.0%
!!! TCCCTCCCATTTTTTGCTGC+AGG + Chr7:78859192-78859211 MsG0780040534.01.T01:intron 50.0%
!!! TTTTTTACCTCCGGGGCATC+AGG + Chr7:78862182-78862201 MsG0780040534.01.T01:intron 50.0%
ACAACAGTTCTGCCACCACC+CGG - Chr7:78857067-78857086 None:intergenic 55.0%
AGGAACAGGCAATCCAGTGG+AGG - Chr7:78858776-78858795 None:intergenic 55.0%
ATGGGTAGTTGCAAGGGGCT+TGG + Chr7:78860961-78860980 MsG0780040534.01.T01:intron 55.0%
CCCCTCCCTGCAGCAAAAAA+TGG - Chr7:78859201-78859220 None:intergenic 55.0%
GCACCCAGTGCCAAATGCAT+AGG - Chr7:78857454-78857473 None:intergenic 55.0%
GCGTCCATGTAGATCAGGCA+TGG + Chr7:78859576-78859595 MsG0780040534.01.T01:intron 55.0%
GGCCAGAAGTGAAGAAGAGC+AGG - Chr7:78856330-78856349 None:intergenic 55.0%
GGCCTGCTCTTCTTCACTTC+TGG + Chr7:78856325-78856344 MsG0780040534.01.T01:CDS 55.0%
GGCTGGCAAGGGTAGCTAAA+GGG + Chr7:78859006-78859025 MsG0780040534.01.T01:intron 55.0%
GTACAGAAGGATCAACCGGG+TGG + Chr7:78857049-78857068 MsG0780040534.01.T01:CDS 55.0%
GTGAAGAAGAGCAGGCCTAG+TGG - Chr7:78856322-78856341 None:intergenic 55.0%
TCAACCGCCGTATACCTGAC+TGG - Chr7:78858663-78858682 None:intergenic 55.0%
! ACAGGCAGAGCGTTCAAACC+CGG + Chr7:78862568-78862587 MsG0780040534.01.T01:CDS 55.0%
! TGGGGCTTTGTGGTTGTTGC+AGG + Chr7:78862431-78862450 MsG0780040534.01.T01:CDS 55.0%
!! CAACGGGCTTTGATGGGTTG+AGG + Chr7:78859509-78859528 MsG0780040534.01.T01:intron 55.0%
AATGCATCCTGATGCCCCGG+AGG - Chr7:78862192-78862211 None:intergenic 60.0%
AGAGACGACAGAGAGAGGGC+GGG + Chr7:78856265-78856284 MsG0780040534.01.T01:intron 60.0%
CAGAAGGATCAACCGGGTGG+TGG + Chr7:78857052-78857071 MsG0780040534.01.T01:CDS 60.0%
CAGAGACGACAGAGAGAGGG+CGG + Chr7:78856264-78856283 MsG0780040534.01.T01:intron 60.0%
CCTGGAGAGAAGTTGGGCCA+AGG + Chr7:78858466-78858485 MsG0780040534.01.T01:intron 60.0%
CCTTGGCCCAACTTCTCTCC+AGG - Chr7:78858469-78858488 None:intergenic 60.0%
CGGCTGGCAAGGGTAGCTAA+AGG + Chr7:78859005-78859024 MsG0780040534.01.T01:intron 60.0%
GCTGCTGTCGTGGTTCCACT+AGG + Chr7:78856304-78856323 MsG0780040534.01.T01:CDS 60.0%
GGTGGCAGAACTGTTGTGGC+TGG + Chr7:78857070-78857089 MsG0780040534.01.T01:CDS 60.0%
TATTGCAGCGGCTGCTGTCG+TGG + Chr7:78856294-78856313 MsG0780040534.01.T01:CDS 60.0%
TTTGCAGGGGCTACCTTGGC+CGG - Chr7:78862590-78862609 None:intergenic 60.0%
! AGAGCGTTCAAACCCGGCCA+AGG + Chr7:78862574-78862593 MsG0780040534.01.T01:CDS 60.0%
! GGGTGGTGGCAGAACTGTTG+TGG + Chr7:78857066-78857085 MsG0780040534.01.T01:CDS 60.0%
CGGCTTTGCAGGGGCTACCT+TGG - Chr7:78862594-78862613 None:intergenic 65.0%
GGCGGGCATGGCTATTGCAG+CGG + Chr7:78856282-78856301 MsG0780040534.01.T01:exon 65.0%
TGGGCGCACACGCATGGTGT+TGG - Chr7:78861618-78861637 None:intergenic 65.0%
TGTGTGTGGGCGCACACGCA+TGG - Chr7:78861624-78861643 None:intergenic 65.0%
TTGCAGGGGCTACCTTGGCC+GGG - Chr7:78862589-78862608 None:intergenic 65.0%
CGACAGAGAGAGGGCGGGCA+TGG + Chr7:78856270-78856289 MsG0780040534.01.T01:exon 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 78855998 78862949 78855998 ID=MsG0780040534.01;Name=MsG0780040534.01
Chr7 mRNA 78856035 78862949 78856035 ID=MsG0780040534.01.T01;Parent=MsG0780040534.01;Name=MsG0780040534.01.T01;_AED=0.38;_eAED=0.41;_QI=113|0.54|0.75|1|0.72|0.75|12|288|415
Chr7 exon 78856035 78856125 78856035 ID=MsG0780040534.01.T01:exon:16434;Parent=MsG0780040534.01.T01
Chr7 exon 78856267 78856369 78856267 ID=MsG0780040534.01.T01:exon:16435;Parent=MsG0780040534.01.T01
Chr7 five_prime_UTR 78856035 78856125 78856035 ID=MsG0780040534.01.T01:five_prime_utr;Parent=MsG0780040534.01.T01
Chr7 five_prime_UTR 78856267 78856288 78856267 ID=MsG0780040534.01.T01:five_prime_utr;Parent=MsG0780040534.01.T01
Chr7 CDS 78856289 78856369 78856289 ID=MsG0780040534.01.T01:cds;Parent=MsG0780040534.01.T01
Chr7 CDS 78856883 78856931 78856883 ID=MsG0780040534.01.T01:cds;Parent=MsG0780040534.01.T01
Chr7 CDS 78857009 78857130 78857009 ID=MsG0780040534.01.T01:cds;Parent=MsG0780040534.01.T01
Chr7 CDS 78857395 78857434 78857395 ID=MsG0780040534.01.T01:cds;Parent=MsG0780040534.01.T01
Chr7 CDS 78857573 78857764 78857573 ID=MsG0780040534.01.T01:cds;Parent=MsG0780040534.01.T01
Chr7 CDS 78857935 78857994 78857935 ID=MsG0780040534.01.T01:cds;Parent=MsG0780040534.01.T01
Chr7 CDS 78858668 78858822 78858668 ID=MsG0780040534.01.T01:cds;Parent=MsG0780040534.01.T01
Chr7 CDS 78861352 78861477 78861352 ID=MsG0780040534.01.T01:cds;Parent=MsG0780040534.01.T01
Chr7 CDS 78861895 78861987 78861895 ID=MsG0780040534.01.T01:cds;Parent=MsG0780040534.01.T01
Chr7 CDS 78862204 78862290 78862204 ID=MsG0780040534.01.T01:cds;Parent=MsG0780040534.01.T01
Chr7 CDS 78862419 78862661 78862419 ID=MsG0780040534.01.T01:cds;Parent=MsG0780040534.01.T01
Chr7 three_prime_UTR 78862662 78862949 78862662 ID=MsG0780040534.01.T01:three_prime_utr;Parent=MsG0780040534.01.T01
Chr7 mRNA 78855998 78862949 78855998 ID=MsG0780040534.01.T02;Parent=MsG0780040534.01;Name=MsG0780040534.01.T02;_AED=0.37;_eAED=0.40;_QI=291|0.5|0.72|1|0.8|0.81|11|288|415
Chr7 exon 78855998 78856369 78855998 ID=MsG0780040534.01.T02:exon:16446;Parent=MsG0780040534.01.T02
Chr7 five_prime_UTR 78855998 78856288 78855998 ID=MsG0780040534.01.T02:five_prime_utr;Parent=MsG0780040534.01.T02
Chr7 CDS 78856289 78856369 78856289 ID=MsG0780040534.01.T02:cds;Parent=MsG0780040534.01.T02
Chr7 CDS 78856883 78856931 78856883 ID=MsG0780040534.01.T02:cds;Parent=MsG0780040534.01.T02
Chr7 CDS 78857009 78857130 78857009 ID=MsG0780040534.01.T02:cds;Parent=MsG0780040534.01.T02
Chr7 CDS 78857395 78857434 78857395 ID=MsG0780040534.01.T02:cds;Parent=MsG0780040534.01.T02
Chr7 CDS 78857573 78857764 78857573 ID=MsG0780040534.01.T02:cds;Parent=MsG0780040534.01.T02
Chr7 CDS 78857935 78857994 78857935 ID=MsG0780040534.01.T02:cds;Parent=MsG0780040534.01.T02
Chr7 CDS 78858668 78858822 78858668 ID=MsG0780040534.01.T02:cds;Parent=MsG0780040534.01.T02
Chr7 CDS 78861352 78861477 78861352 ID=MsG0780040534.01.T02:cds;Parent=MsG0780040534.01.T02
Chr7 CDS 78861895 78861987 78861895 ID=MsG0780040534.01.T02:cds;Parent=MsG0780040534.01.T02
Chr7 CDS 78862204 78862290 78862204 ID=MsG0780040534.01.T02:cds;Parent=MsG0780040534.01.T02
Chr7 CDS 78862419 78862661 78862419 ID=MsG0780040534.01.T02:cds;Parent=MsG0780040534.01.T02
Chr7 three_prime_UTR 78862662 78862949 78862662 ID=MsG0780040534.01.T02:three_prime_utr;Parent=MsG0780040534.01.T02
Gene Sequence

>MsG0780040534.01.T01

ATGGCTATTGCAGCGGCTGCTGTCGTGGTTCCACTAGGCCTGCTCTTCTTCACTTCTGGCCTCATCGTTAATTTCTTTCAGCATATGAGTGCTTATGTGATAAGTTGTTTATCAAAACAAGGCTTAATTGGCAATATGCTACGTGCTAGTAAGACCGCTGTCGAAGAATTGTACAGAAGGATCAACCGGGTGGTGGCAGAACTGTTGTGGCTGGAACTTGTTTGGCTTATTGATTGGTGGGCTGGAGTTAAGGTCGAAATATACACGGACCGCGAAACTTTTAGTTTGATGGATTCTATTTTGAATTTTTCAGGTAAAGAACATGCACTTGTCATATGCAATCACAGAAGTGATATTGATTGGCTTGTTGGATGGGTTTTAGCTCAGGTGATTGTTTTATTTGGTATGACCTTTTCACTTTTTCAACGCAAGAAATTTATGAAATTCACTGCGTATGCTCCAGTAGCTTATATATCATTTAAAACGTTCAGGTTGCCTTGGCAGTACTCTAGCAGTGATGAAGAAATCGTCAAAGTTTCTGCCGGTATACGGCGGTTGAATGATTTCCCTCTTCCATTTTGGTTGGCTCTCTTTGTAGAAGGAACACGTTTTACAAATGTCAAATTATTAGCTGCTCAGGAATATGCAACCTCCACTGGATTGCCTGTTCCTAGAAACGTTTTGATTCCTAGAACTAAGGGGTTTGTTTCGGCTGTAAGTCATATGCGATCATTTGTTCCTGCCGTTTACGACATAACAGTGGCTATCCCCAAGAGTTCACCTGCTCCTACAATGCTAAGGCTCTTACAGCGGAAACGTTCAGTGGTGCAAGTTCATATCAAGCGACATTTGATGAATGAATTGCCAGAAACAGATGAAGCTGTTGCTCAGTGGTGTAGAGATATATTTGTGGCCAAGGATGCATTGTTAGACAAACATGTAGCTGAGGATACTTTCAGTGATCAAGAGCTGCAGGACTCTCGTCGACCAATAAAGCCTCTTGCGGTAGCTCTATCTTGGGGCTTTGTGGTTGTTGCAGGCAGTGTTAAGTTCCTACAATGGTCTTCATTGCTATCATCATGGAAGGGCGTTGCATTTTCAACTTTTGGTTTGGCAGTTGTTACTGGTCTCATGCAAGTCTTGATTTTATTCTCACAGGCAGAGCGTTCAAACCCGGCCAAGGTAGCCCCTGCAAAGCCGAAAAACAAGGAGGAACAACCCGAGGCTATAAATGACAAACAACAGTAG

>MsG0780040534.01.T02

ATGGCTATTGCAGCGGCTGCTGTCGTGGTTCCACTAGGCCTGCTCTTCTTCACTTCTGGCCTCATCGTTAATTTCTTTCAGCATATGAGTGCTTATGTGATAAGTTGTTTATCAAAACAAGGCTTAATTGGCAATATGCTACGTGCTAGTAAGACCGCTGTCGAAGAATTGTACAGAAGGATCAACCGGGTGGTGGCAGAACTGTTGTGGCTGGAACTTGTTTGGCTTATTGATTGGTGGGCTGGAGTTAAGGTCGAAATATACACGGACCGCGAAACTTTTAGTTTGATGGATTCTATTTTGAATTTTTCAGGTAAAGAACATGCACTTGTCATATGCAATCACAGAAGTGATATTGATTGGCTTGTTGGATGGGTTTTAGCTCAGGTGATTGTTTTATTTGGTATGACCTTTTCACTTTTTCAACGCAAGAAATTTATGAAATTCACTGCGTATGCTCCAGTAGCTTATATATCATTTAAAACGTTCAGGTTGCCTTGGCAGTACTCTAGCAGTGATGAAGAAATCGTCAAAGTTTCTGCCGGTATACGGCGGTTGAATGATTTCCCTCTTCCATTTTGGTTGGCTCTCTTTGTAGAAGGAACACGTTTTACAAATGTCAAATTATTAGCTGCTCAGGAATATGCAACCTCCACTGGATTGCCTGTTCCTAGAAACGTTTTGATTCCTAGAACTAAGGGGTTTGTTTCGGCTGTAAGTCATATGCGATCATTTGTTCCTGCCGTTTACGACATAACAGTGGCTATCCCCAAGAGTTCACCTGCTCCTACAATGCTAAGGCTCTTACAGCGGAAACGTTCAGTGGTGCAAGTTCATATCAAGCGACATTTGATGAATGAATTGCCAGAAACAGATGAAGCTGTTGCTCAGTGGTGTAGAGATATATTTGTGGCCAAGGATGCATTGTTAGACAAACATGTAGCTGAGGATACTTTCAGTGATCAAGAGCTGCAGGACTCTCGTCGACCAATAAAGCCTCTTGCGGTAGCTCTATCTTGGGGCTTTGTGGTTGTTGCAGGCAGTGTTAAGTTCCTACAATGGTCTTCATTGCTATCATCATGGAAGGGCGTTGCATTTTCAACTTTTGGTTTGGCAGTTGTTACTGGTCTCATGCAAGTCTTGATTTTATTCTCACAGGCAGAGCGTTCAAACCCGGCCAAGGTAGCCCCTGCAAAGCCGAAAAACAAGGAGGAACAACCCGAGGCTATAAATGACAAACAACAGTAG
Protein sequence

>MsG0780040534.01.T01

MAIAAAAVVVPLGLLFFTSGLIVNFFQHMSAYVISCLSKQGLIGNMLRASKTAVEELYRRINRVVAELLWLELVWLIDWWAGVKVEIYTDRETFSLMDSILNFSGKEHALVICNHRSDIDWLVGWVLAQVIVLFGMTFSLFQRKKFMKFTAYAPVAYISFKTFRLPWQYSSSDEEIVKVSAGIRRLNDFPLPFWLALFVEGTRFTNVKLLAAQEYATSTGLPVPRNVLIPRTKGFVSAVSHMRSFVPAVYDITVAIPKSSPAPTMLRLLQRKRSVVQVHIKRHLMNELPETDEAVAQWCRDIFVAKDALLDKHVAEDTFSDQELQDSRRPIKPLAVALSWGFVVVAGSVKFLQWSSLLSSWKGVAFSTFGLAVVTGLMQVLILFSQAERSNPAKVAPAKPKNKEEQPEAINDKQQ*

>MsG0780040534.01.T02

MAIAAAAVVVPLGLLFFTSGLIVNFFQHMSAYVISCLSKQGLIGNMLRASKTAVEELYRRINRVVAELLWLELVWLIDWWAGVKVEIYTDRETFSLMDSILNFSGKEHALVICNHRSDIDWLVGWVLAQVIVLFGMTFSLFQRKKFMKFTAYAPVAYISFKTFRLPWQYSSSDEEIVKVSAGIRRLNDFPLPFWLALFVEGTRFTNVKLLAAQEYATSTGLPVPRNVLIPRTKGFVSAVSHMRSFVPAVYDITVAIPKSSPAPTMLRLLQRKRSVVQVHIKRHLMNELPETDEAVAQWCRDIFVAKDALLDKHVAEDTFSDQELQDSRRPIKPLAVALSWGFVVVAGSVKFLQWSSLLSSWKGVAFSTFGLAVVTGLMQVLILFSQAERSNPAKVAPAKPKNKEEQPEAINDKQQ*