AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011388.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011388.01.T01 MTR_2g103570 93.333 180 0 1 1 168 1 180 1.23e-117 330
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011388.01.T01 AT1G52600 85.556 180 14 1 1 168 1 180 3.12e-109 309
MsG0280011388.01.T01 AT3G15710 79.444 180 25 1 1 168 1 180 1.96e-98 281

Find 54 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGTTGTCGTTGTTCTTTC+TGG -0.006320 2:-83377847 MsG0280011388.01.T01:CDS
AATTAATATTATGCTGTTAA+TGG 0.174068 2:+83375680 None:intergenic
TATATTCTCATCGGTGCTTT+GGG 0.249893 2:-83375822 MsG0280011388.01.T01:CDS
GCTGCAAAGGCACCACATTA+TGG 0.262708 2:-83376467 MsG0280011388.01.T01:CDS
CGTTGTTCTTTCTGGAAGTA+TGG 0.268459 2:-83377839 MsG0280011388.01.T01:CDS
GGTTCTTACCTTATGTTGGC+TGG 0.291373 2:-83376132 MsG0280011388.01.T01:CDS
TTACGTCTGCACTGATAATA+TGG 0.295460 2:-83377903 MsG0280011388.01.T01:CDS
CACTCACTCACTCAAGAAAT+TGG 0.305413 2:-83378814 MsG0280011388.01.T01:five_prime_UTR
ATTAATTAATACAAAGTAGT+TGG 0.319152 2:-83375664 MsG0280011388.01.T01:three_prime_UTR
GTATATTCTCATCGGTGCTT+TGG 0.339154 2:-83375823 MsG0280011388.01.T01:CDS
GTTTCTCTATTTGTATTTGT+TGG 0.349188 2:-83378858 None:intergenic
GTACATGAAAGAGGAGATAC+TGG 0.367204 2:-83376739 MsG0280011388.01.T01:CDS
ACAATCTCTCCTGCGCGAAT+TGG 0.370765 2:+83377585 None:intergenic
CTGCAAAGGCACCACATTAT+GGG 0.401647 2:-83376466 MsG0280011388.01.T01:CDS
ACGGATCTGAAGAGATTTGA+TGG 0.414274 2:+83378718 None:intergenic
ATGGCCAGCTTTGGCTGCAA+AGG 0.415700 2:-83376480 MsG0280011388.01.T01:CDS
TTGGTAGGAGATAACAACTA+TGG 0.420648 2:-83376526 MsG0280011388.01.T01:intron
TGTATGCTCATGGCCAGCTT+TGG 0.429153 2:-83376489 MsG0280011388.01.T01:CDS
GGCAGGTTCTTACCTTATGT+TGG 0.435021 2:-83376136 MsG0280011388.01.T01:intron
GAAGAATCTCAATCAAATTA+CGG 0.442574 2:-83375769 MsG0280011388.01.T01:three_prime_UTR
CCAGAAAGAACAACGACAAC+AGG 0.443989 2:+83377847 None:intergenic
TCTTTCTGGAAGTATGGAAC+CGG 0.447654 2:-83377833 MsG0280011388.01.T01:CDS
CTTGTTCTTACACATGAGTA+AGG 0.448520 2:-83377610 MsG0280011388.01.T01:CDS
CTCACTCAGGCTGTTAGCCT+TGG 0.449557 2:-83378689 MsG0280011388.01.T01:intron
AGCAAACAAACCTTGATGAT+AGG 0.465854 2:+83376085 None:intergenic
GGTGCCTTTGCAGCCAAAGC+TGG 0.467005 2:+83376476 None:intergenic
CACATTATGGGTAGAGCTGT+TGG 0.467483 2:-83376454 MsG0280011388.01.T01:CDS
GTTCTTACCTTATGTTGGCT+GGG 0.476337 2:-83376131 MsG0280011388.01.T01:CDS
ATTGTCACCCAGCCAACATA+AGG 0.486894 2:+83376124 None:intergenic
TTGCTTACACGTTTGAATCC+CGG 0.492003 2:+83377814 None:intergenic
TGGTAGGAGATAACAACTAT+GGG 0.500018 2:-83376525 MsG0280011388.01.T01:intron
AGAAACGCAATGGGTTTCGT+TGG 0.517115 2:-83378755 MsG0280011388.01.T01:exon
TTTGCTCATAGTACTATTCG+AGG 0.518018 2:+83375741 None:intergenic
ATTCAAGAAAGAAACGCAAT+GGG 0.520667 2:-83378764 MsG0280011388.01.T01:exon
ACATTATGGGTAGAGCTGTT+GGG 0.526062 2:-83376453 MsG0280011388.01.T01:intron
CTTTCTGGAAGTATGGAACC+GGG 0.531861 2:-83377832 MsG0280011388.01.T01:CDS
AAGGCATTGATGTGCATCAC+TGG 0.537420 2:-83377880 MsG0280011388.01.T01:CDS
GAGGTTGATGTTCTCACAAA+AGG 0.541893 2:-83376715 MsG0280011388.01.T01:intron
CATTCAAGAAAGAAACGCAA+TGG 0.543308 2:-83378765 MsG0280011388.01.T01:exon
TGATAACTTCAAAAGAGTAA+AGG 0.546067 2:-83375791 MsG0280011388.01.T01:exon
CAAATCTCTTCAGATCCGTC+AGG 0.547809 2:-83378714 MsG0280011388.01.T01:CDS
ATAACAACTATGGGGATGAC+AGG 0.548283 2:-83376516 MsG0280011388.01.T01:CDS
GATCCGTCAGGTCCTCACTC+AGG 0.557343 2:-83378702 MsG0280011388.01.T01:CDS
ATATTCTCATCGGTGCTTTG+GGG 0.574182 2:-83375821 MsG0280011388.01.T01:CDS
TACATGAAAGAGGAGATACT+GGG 0.588815 2:-83376738 MsG0280011388.01.T01:CDS
GACAGGCTACTGTATGCTCA+TGG 0.602506 2:-83376499 MsG0280011388.01.T01:CDS
GTCTGCACTGATAATATGGA+AGG 0.605731 2:-83377899 MsG0280011388.01.T01:CDS
CAGCCTGAGTGAGGACCTGA+CGG 0.616226 2:+83378699 None:intergenic
AGTAAGGATCCAATTCGCGC+AGG 0.635833 2:-83377594 MsG0280011388.01.T01:CDS
CAACAGCTCTACCCATAATG+TGG 0.657840 2:+83376455 None:intergenic
CAAGGCTAACAGCCTGAGTG+AGG 0.659133 2:+83378690 None:intergenic
GGTAGGAGATAACAACTATG+GGG 0.698337 2:-83376524 MsG0280011388.01.T01:intron
TGAAAGAGGAGATACTGGGG+AGG 0.732394 2:-83376734 MsG0280011388.01.T01:CDS
ACATGAAAGAGGAGATACTG+GGG 0.746258 2:-83376737 MsG0280011388.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAACTTTATTTTATCTTTT+TGG - Chr2:83376401-83376420 MsG0280011388.01.T01:intron 10.0%
!!! TTTTAATCAATTATTATATG+GGG - Chr2:83376037-83376056 MsG0280011388.01.T01:intron 10.0%
!! AATTAATATTATGCTGTTAA+TGG + Chr2:83378829-83378848 None:intergenic 15.0%
!! ATTAATTAATACAAAGTAGT+TGG - Chr2:83378842-83378861 MsG0280011388.01.T01:five_prime_UTR 15.0%
!! TACGTTATACAATTTATATT+TGG - Chr2:83375904-83375923 MsG0280011388.01.T01:intron 15.0%
!! TTTACATTTATGTATGTTTA+TGG - Chr2:83378485-83378504 MsG0280011388.01.T01:intron 15.0%
!!! TCAATTTAGTTTATAATTCA+AGG - Chr2:83376102-83376121 MsG0280011388.01.T01:CDS 15.0%
!! TAAATGGTTGTTTATCTTTA+AGG - Chr2:83376156-83376175 MsG0280011388.01.T01:intron 20.0%
!! TATTAGATACAGAATTACTA+AGG + Chr2:83376734-83376753 None:intergenic 20.0%
!! TTAGTTGTCAATTTATATAG+TGG - Chr2:83377915-83377934 MsG0280011388.01.T01:CDS 20.0%
!! TTTATGGGTTTATTGATAAA+TGG - Chr2:83376140-83376159 MsG0280011388.01.T01:intron 20.0%
!!! ATCATGATTTTTAAACCAAT+GGG - Chr2:83378545-83378564 MsG0280011388.01.T01:intron 20.0%
!!! ATTGGTTTAAAAATCATGAT+AGG + Chr2:83378545-83378564 None:intergenic 20.0%
!!! TATCATGATTTTTAAACCAA+TGG - Chr2:83378544-83378563 MsG0280011388.01.T01:intron 20.0%
! AATAAACTGTTAATCCAAAC+AGG - Chr2:83376484-83376503 MsG0280011388.01.T01:CDS 25.0%
! ATAAACTGTTAATCCAAACA+GGG - Chr2:83376485-83376504 MsG0280011388.01.T01:CDS 25.0%
! ATCAAATTCACTATTGAGAT+TGG + Chr2:83377871-83377890 None:intergenic 25.0%
! ATCACTAATCTGAGAAATAA+TGG - Chr2:83377652-83377671 MsG0280011388.01.T01:intron 25.0%
! ATTTCATTTCTTGAATGTGT+AGG - Chr2:83377335-83377354 MsG0280011388.01.T01:intron 25.0%
! CGAGAAAAAGGAAATATAAT+TGG + Chr2:83377894-83377913 None:intergenic 25.0%
! CTATGAATAAAACAATGATC+TGG + Chr2:83376546-83376565 None:intergenic 25.0%
! CTTGTTGCAATTCAAATTAT+AGG + Chr2:83378627-83378646 None:intergenic 25.0%
! GAAGAATCTCAATCAAATTA+CGG - Chr2:83378737-83378756 MsG0280011388.01.T01:CDS 25.0%
! GACTTGTAACATAAAGATTA+AGG - Chr2:83378096-83378115 MsG0280011388.01.T01:intron 25.0%
! GATAAATAAGAACTAAAAGC+AGG + Chr2:83377471-83377490 None:intergenic 25.0%
! TAAATGATAACACAATAGGT+TGG + Chr2:83378450-83378469 None:intergenic 25.0%
! TATGTAGTTACAGTTTGAAT+AGG + Chr2:83377365-83377384 None:intergenic 25.0%
! TCAAAAACATCAAAATTCGA+CGG + Chr2:83375960-83375979 None:intergenic 25.0%
! TCAAATTCACTATTGAGATT+GGG + Chr2:83377870-83377889 None:intergenic 25.0%
! TGATAACTTCAAAAGAGTAA+AGG - Chr2:83378715-83378734 MsG0280011388.01.T01:CDS 25.0%
! TTGAAGTAAGTAAAACATAC+AGG + Chr2:83376988-83377007 None:intergenic 25.0%
! TTTCATTTCTTGAATGTGTA+GGG - Chr2:83377336-83377355 MsG0280011388.01.T01:intron 25.0%
! TTTCTGATGCTAATGAATAT+TGG - Chr2:83376856-83376875 MsG0280011388.01.T01:intron 25.0%
!! TAAATGCTTGATCATTTTGT+AGG - Chr2:83377745-83377764 MsG0280011388.01.T01:intron 25.0%
!! TGATATTAAGGTATTATGCA+TGG - Chr2:83378169-83378188 MsG0280011388.01.T01:intron 25.0%
!! TTCCTTTCAATTTTAGATGT+GGG - Chr2:83376072-83376091 MsG0280011388.01.T01:intron 25.0%
!! TTTCCTTTCAATTTTAGATG+TGG - Chr2:83376071-83376090 MsG0280011388.01.T01:intron 25.0%
!!! AATGAATATTGGTTTTTGCA+GGG - Chr2:83376867-83376886 MsG0280011388.01.T01:intron 25.0%
!!! ATCTTTAAGGATTTTGATGA+GGG - Chr2:83376169-83376188 MsG0280011388.01.T01:intron 25.0%
!!! TAATGAATATTGGTTTTTGC+AGG - Chr2:83376866-83376885 MsG0280011388.01.T01:intron 25.0%
!!! TATCTTTAAGGATTTTGATG+AGG - Chr2:83376168-83376187 MsG0280011388.01.T01:intron 25.0%
!!! TGATTGAGTTGAATTGAATT+GGG + Chr2:83375859-83375878 None:intergenic 25.0%
!!! TTGATTGAGTTGAATTGAAT+TGG + Chr2:83375860-83375879 None:intergenic 25.0%
AAACAGCAAAATACAAGAGA+CGG + Chr2:83377960-83377979 None:intergenic 30.0%
ACATTGCTTGTATTTGTCAA+TGG - Chr2:83378349-83378368 MsG0280011388.01.T01:intron 30.0%
ATTCAAGAAAGAAACGCAAT+GGG - Chr2:83375742-83375761 MsG0280011388.01.T01:three_prime_UTR 30.0%
CAGCTAAATGATAACACAAT+AGG + Chr2:83378454-83378473 None:intergenic 30.0%
GAATGAGATCTGTGATATTA+AGG - Chr2:83378157-83378176 MsG0280011388.01.T01:intron 30.0%
GAATTAGCGTAGGATAAATT+AGG + Chr2:83378266-83378285 None:intergenic 30.0%
GATAAATTAGGATAAACCCT+TGG + Chr2:83378254-83378273 None:intergenic 30.0%
GCCTATGTAGATTATATGAA+CGG - Chr2:83376507-83376526 MsG0280011388.01.T01:CDS 30.0%
GTGAGGAATTCTAATGTTAA+GGG - Chr2:83376198-83376217 MsG0280011388.01.T01:intron 30.0%
TGGATAAGATTGATATTACC+TGG - Chr2:83377672-83377691 MsG0280011388.01.T01:intron 30.0%
TGTGAGGAATTCTAATGTTA+AGG - Chr2:83376197-83376216 MsG0280011388.01.T01:intron 30.0%
TGTTATCATTTAGCTGAAGT+TGG - Chr2:83378458-83378477 MsG0280011388.01.T01:intron 30.0%
TTGACAACTAAACGAGAAAA+AGG + Chr2:83377906-83377925 None:intergenic 30.0%
! AACCCACATCTAAAATTGAA+AGG + Chr2:83376077-83376096 None:intergenic 30.0%
! AATATCTTGTCATTTGCAAG+TGG - Chr2:83377600-83377619 MsG0280011388.01.T01:CDS 30.0%
! ATTTTGTAGGTACATGAAAG+AGG - Chr2:83377758-83377777 MsG0280011388.01.T01:intron 30.0%
! GTTTTGCAGTATATTCTCAT+CGG - Chr2:83378675-83378694 MsG0280011388.01.T01:intron 30.0%
! TTAAGGTAAGCTCAGTATTT+TGG - Chr2:83377138-83377157 MsG0280011388.01.T01:intron 30.0%
! TTTTTCGTGTTGTGGTTTAT+GGG - Chr2:83376125-83376144 MsG0280011388.01.T01:CDS 30.0%
!! ATTGAGTTGAATTGAATTGG+GGG + Chr2:83375857-83375876 None:intergenic 30.0%
!! GATTGAGTTGAATTGAATTG+GGG + Chr2:83375858-83375877 None:intergenic 30.0%
!! TCTTTAAGGATTTTGATGAG+GGG - Chr2:83376170-83376189 MsG0280011388.01.T01:intron 30.0%
!!! ATGAATATTGGTTTTTGCAG+GGG - Chr2:83376868-83376887 MsG0280011388.01.T01:intron 30.0%
!!! CATGCTTTTTTTTAACTCGA+AGG - Chr2:83378791-83378810 MsG0280011388.01.T01:five_prime_UTR 30.0%
!!! CTCTTGTATTTTGCTGTTTT+TGG - Chr2:83377961-83377980 MsG0280011388.01.T01:intron 30.0%
!!! GTACCCTTTTTTTTCCTTTA+GGG - Chr2:83377086-83377105 MsG0280011388.01.T01:intron 30.0%
!!! TGTACCCTTTTTTTTCCTTT+AGG - Chr2:83377085-83377104 MsG0280011388.01.T01:intron 30.0%
!!! TGTATTTTGCTGTTTTTGGT+AGG - Chr2:83377965-83377984 MsG0280011388.01.T01:intron 30.0%
AAAATTCGACGGTTTCAAAG+TGG + Chr2:83375949-83375968 None:intergenic 35.0%
AACAGCAAAATACAAGAGAC+GGG + Chr2:83377959-83377978 None:intergenic 35.0%
ATACAGGATATACAACAGAG+AGG + Chr2:83376972-83376991 None:intergenic 35.0%
ATAGGACCCAGATACAAAAA+TGG + Chr2:83377434-83377453 None:intergenic 35.0%
ATCCACACATAATTGTCTTC+TGG - Chr2:83377265-83377284 MsG0280011388.01.T01:intron 35.0%
CATTCAAGAAAGAAACGCAA+TGG - Chr2:83375741-83375760 MsG0280011388.01.T01:three_prime_UTR 35.0%
CGTCCCTAAAGGAAAAAAAA+GGG + Chr2:83377092-83377111 None:intergenic 35.0%
CTTGTTCTTACACATGAGTA+AGG - Chr2:83376896-83376915 MsG0280011388.01.T01:intron 35.0%
GACTGAAAAACCTATCATCA+AGG - Chr2:83378411-83378430 MsG0280011388.01.T01:intron 35.0%
GATCTACTTGCTCTAATGTA+AGG + Chr2:83378605-83378624 None:intergenic 35.0%
GCCGTTCATATAATCTACAT+AGG + Chr2:83376511-83376530 None:intergenic 35.0%
GTCTCACAGACTTATATGAT+TGG + Chr2:83376253-83376272 None:intergenic 35.0%
GTGATAGATATTCCACAAGT+AGG + Chr2:83378211-83378230 None:intergenic 35.0%
TAAACCCTTGGTATGTTCAA+AGG + Chr2:83378242-83378261 None:intergenic 35.0%
TACATGAAAGAGGAGATACT+GGG - Chr2:83377768-83377787 MsG0280011388.01.T01:intron 35.0%
TATAAGTCTGTGAGACTGTT+TGG - Chr2:83376257-83376276 MsG0280011388.01.T01:intron 35.0%
TATGGTGAAACCTATCATCA+AGG - Chr2:83378503-83378522 MsG0280011388.01.T01:intron 35.0%
TCCTTACTGACAAAATCTGT+TGG - Chr2:83377060-83377079 MsG0280011388.01.T01:intron 35.0%
TCGTCCCTAAAGGAAAAAAA+AGG + Chr2:83377093-83377112 None:intergenic 35.0%
TGAACCTTTGAACATACCAA+GGG - Chr2:83378235-83378254 MsG0280011388.01.T01:intron 35.0%
TGACACTGTACTGTTATTGT+AGG + Chr2:83376761-83376780 None:intergenic 35.0%
TGGTAGGAGATAACAACTAT+GGG - Chr2:83377981-83378000 MsG0280011388.01.T01:intron 35.0%
TTAATTACACGATGCACGAT+CGG + Chr2:83377122-83377141 None:intergenic 35.0%
TTATCCTACGCTAATTCCTA+CGG - Chr2:83378269-83378288 MsG0280011388.01.T01:intron 35.0%
TTGAACCTTTGAACATACCA+AGG - Chr2:83378234-83378253 MsG0280011388.01.T01:intron 35.0%
TTGGTAGGAGATAACAACTA+TGG - Chr2:83377980-83377999 MsG0280011388.01.T01:intron 35.0%
TTTGCTCATAGTACTATTCG+AGG + Chr2:83378768-83378787 None:intergenic 35.0%
! AAGCATTTAGAGTCTCAAAC+AGG + Chr2:83377734-83377753 None:intergenic 35.0%
! AGCAAACAAACCTTGATGAT+AGG + Chr2:83378424-83378443 None:intergenic 35.0%
! ATGATAACACAATAGGTTGG+CGG + Chr2:83378447-83378466 None:intergenic 35.0%
! ATTCAAGGTTTTTCGTGTTG+TGG - Chr2:83376117-83376136 MsG0280011388.01.T01:CDS 35.0%
! ATTTGGTAGCTACATTGATC+TGG - Chr2:83375921-83375940 MsG0280011388.01.T01:intron 35.0%
! CATAAGCAAACCTTGATGAT+AGG + Chr2:83378516-83378535 None:intergenic 35.0%
! CGAAACATGCTTTGTTCTAT+AGG + Chr2:83378303-83378322 None:intergenic 35.0%
! CTATCATCAAGGTTTGCTTA+TGG - Chr2:83378514-83378533 MsG0280011388.01.T01:intron 35.0%
! GTTTTTCGTGTTGTGGTTTA+TGG - Chr2:83376124-83376143 MsG0280011388.01.T01:CDS 35.0%
! TATATTCTCATCGGTGCTTT+GGG - Chr2:83378684-83378703 MsG0280011388.01.T01:intron 35.0%
! TCTAATGTTAAGGGCATGTT+TGG - Chr2:83376207-83376226 MsG0280011388.01.T01:intron 35.0%
! TTACGTCTGCACTGATAATA+TGG - Chr2:83376603-83376622 MsG0280011388.01.T01:intron 35.0%
! TTTGGTAGCTACATTGATCT+GGG - Chr2:83375922-83375941 MsG0280011388.01.T01:intron 35.0%
!!! TGAATATTGGTTTTTGCAGG+GGG - Chr2:83376869-83376888 MsG0280011388.01.T01:intron 35.0%
AACTTGTGGAAACTGGAGAT+TGG - Chr2:83377624-83377643 MsG0280011388.01.T01:intron 40.0%
AAGTAGTTCAAACAGCACAG+AGG + Chr2:83377575-83377594 None:intergenic 40.0%
ACACATAATTGTCTTCTGGC+TGG - Chr2:83377269-83377288 MsG0280011388.01.T01:intron 40.0%
ACATGAAAGAGGAGATACTG+GGG - Chr2:83377769-83377788 MsG0280011388.01.T01:intron 40.0%
ACATTATGGGTAGAGCTGTT+GGG - Chr2:83378053-83378072 MsG0280011388.01.T01:intron 40.0%
ACATTGTGAACTGATGCCAT+TGG - Chr2:83377526-83377545 MsG0280011388.01.T01:intron 40.0%
ACGGATCTGAAGAGATTTGA+TGG + Chr2:83375791-83375810 None:intergenic 40.0%
AGAGGTTCAAAAAGTGAAGG+AGG + Chr2:83377557-83377576 None:intergenic 40.0%
AGCCAGAAGACAATTATGTG+TGG + Chr2:83377270-83377289 None:intergenic 40.0%
AGTGGAAAATCATAGCCCAT+TGG + Chr2:83378563-83378582 None:intergenic 40.0%
ATAACAACTATGGGGATGAC+AGG - Chr2:83377990-83378009 MsG0280011388.01.T01:intron 40.0%
CACAGAGGTTCAAAAAGTGA+AGG + Chr2:83377560-83377579 None:intergenic 40.0%
CACTCACTCACTCAAGAAAT+TGG - Chr2:83375692-83375711 MsG0280011388.01.T01:three_prime_UTR 40.0%
CAGGTAGTGACTATGTTGAT+AGG + Chr2:83377452-83377471 None:intergenic 40.0%
GAAAAAGTTGTTCACAGTGC+TGG - Chr2:83377300-83377319 MsG0280011388.01.T01:intron 40.0%
GAGCTTACCAAGCTTGATTT+GGG - Chr2:83377401-83377420 MsG0280011388.01.T01:intron 40.0%
GATCGTGCATCGTGTAATTA+AGG - Chr2:83377121-83377140 MsG0280011388.01.T01:intron 40.0%
GGTAGGAGATAACAACTATG+GGG - Chr2:83377982-83378001 MsG0280011388.01.T01:intron 40.0%
GTACATGAAAGAGGAGATAC+TGG - Chr2:83377767-83377786 MsG0280011388.01.T01:intron 40.0%
TAATCTACATAGGCCCTGTT+TGG + Chr2:83376501-83376520 None:intergenic 40.0%
TCTATAGGAATGCAAACCGT+AGG + Chr2:83378288-83378307 None:intergenic 40.0%
TGAGCTTACCAAGCTTGATT+TGG - Chr2:83377400-83377419 MsG0280011388.01.T01:intron 40.0%
TGCTTGAAGATACCTACTTG+TGG - Chr2:83378196-83378215 MsG0280011388.01.T01:intron 40.0%
TGCTTGTATTTGTCAATGGC+AGG - Chr2:83378353-83378372 MsG0280011388.01.T01:intron 40.0%
TTGCTTACACGTTTGAATCC+CGG + Chr2:83376695-83376714 None:intergenic 40.0%
! ATATTCTCATCGGTGCTTTG+GGG - Chr2:83378685-83378704 MsG0280011388.01.T01:intron 40.0%
! CGTTGTTCTTTCTGGAAGTA+TGG - Chr2:83376667-83376686 MsG0280011388.01.T01:intron 40.0%
! GCCAACAGATTTTGTCAGTA+AGG + Chr2:83377064-83377083 None:intergenic 40.0%
! GTATATTCTCATCGGTGCTT+TGG - Chr2:83378683-83378702 MsG0280011388.01.T01:intron 40.0%
! GTCTGCACTGATAATATGGA+AGG - Chr2:83376607-83376626 MsG0280011388.01.T01:intron 40.0%
! GTTCTTACCTTATGTTGGCT+GGG - Chr2:83378375-83378394 MsG0280011388.01.T01:intron 40.0%
! TCTTTCTGGAAGTATGGAAC+CGG - Chr2:83376673-83376692 MsG0280011388.01.T01:intron 40.0%
! TGCTGAATGTGACTTTGAGA+CGG - Chr2:83377196-83377215 MsG0280011388.01.T01:intron 40.0%
! TGTCTTCTGGCTGGAATATT+AGG - Chr2:83377278-83377297 MsG0280011388.01.T01:intron 40.0%
! TGTTAAGGGCATGTTTGGAT+TGG - Chr2:83376212-83376231 MsG0280011388.01.T01:intron 40.0%
! TTTTCCTTGTGTTCTGCTTC+AGG - Chr2:83376572-83376591 MsG0280011388.01.T01:intron 40.0%
!! GAGGTTGATGTTCTCACAAA+AGG - Chr2:83377791-83377810 MsG0280011388.01.T01:intron 40.0%
!! GTGGGTCCATTTTTGTATCT+GGG - Chr2:83377425-83377444 MsG0280011388.01.T01:intron 40.0%
!! GTTGACTTGAGAGAGAAAAG+TGG + Chr2:83378581-83378600 None:intergenic 40.0%
!! TGTGGGTCCATTTTTGTATC+TGG - Chr2:83377424-83377443 MsG0280011388.01.T01:intron 40.0%
AAGTGGCAACTTGTGGAAAC+TGG - Chr2:83377617-83377636 MsG0280011388.01.T01:CDS 45.0%
ACCTTCTCATGTTAGAGCCT+TGG - Chr2:83377231-83377250 MsG0280011388.01.T01:intron 45.0%
AGTGAAGGAGGAACTTCCAA+TGG + Chr2:83377545-83377564 None:intergenic 45.0%
ATTGTCACCCAGCCAACATA+AGG + Chr2:83378385-83378404 None:intergenic 45.0%
CAAACCGTAGGAATTAGCGT+AGG + Chr2:83378276-83378295 None:intergenic 45.0%
CAAATCTCTTCAGATCCGTC+AGG - Chr2:83375792-83375811 MsG0280011388.01.T01:exon 45.0%
CAACAGCTCTACCCATAATG+TGG + Chr2:83378054-83378073 None:intergenic 45.0%
CAACGCATGAAGATCAATCC+AGG + Chr2:83377693-83377712 None:intergenic 45.0%
CACATTATGGGTAGAGCTGT+TGG - Chr2:83378052-83378071 MsG0280011388.01.T01:intron 45.0%
CATTTGCAAGTGGCAACTTG+TGG - Chr2:83377610-83377629 MsG0280011388.01.T01:CDS 45.0%
CCAGAAAGAACAACGACAAC+AGG + Chr2:83376662-83376681 None:intergenic 45.0%
CCTGTTGTCGTTGTTCTTTC+TGG - Chr2:83376659-83376678 MsG0280011388.01.T01:intron 45.0%
GGCAGGTTCTTACCTTATGT+TGG - Chr2:83378370-83378389 MsG0280011388.01.T01:intron 45.0%
GGTTCTTACCTTATGTTGGC+TGG - Chr2:83378374-83378393 MsG0280011388.01.T01:intron 45.0%
GTGGATCATCTCATGATCCA+AGG + Chr2:83377251-83377270 None:intergenic 45.0%
TTTGATGAGGGGAGATTGTG+AGG - Chr2:83376181-83376200 MsG0280011388.01.T01:intron 45.0%
! AAGTTGTTCACAGTGCTGGA+TGG - Chr2:83377304-83377323 MsG0280011388.01.T01:intron 45.0%
! AGAAACGCAATGGGTTTCGT+TGG - Chr2:83375751-83375770 MsG0280011388.01.T01:three_prime_UTR 45.0%
! CTTTCTGGAAGTATGGAACC+GGG - Chr2:83376674-83376693 MsG0280011388.01.T01:intron 45.0%
! TCCAAGGCTCTAACATGAGA+AGG + Chr2:83377235-83377254 None:intergenic 45.0%
!! AAGGCATTGATGTGCATCAC+TGG - Chr2:83376626-83376645 MsG0280011388.01.T01:intron 45.0%
!! ACCAAGCTTGATTTGGGTGT+GGG - Chr2:83377407-83377426 MsG0280011388.01.T01:intron 45.0%
!! CTGCAAAGGCACCACATTAT+GGG - Chr2:83378040-83378059 MsG0280011388.01.T01:intron 45.0%
!! TACCAAGCTTGATTTGGGTG+TGG - Chr2:83377406-83377425 MsG0280011388.01.T01:intron 45.0%
!! ATATAATAATTGATTAAAAT+TGG + Chr2:83376036-83376055 None:intergenic 5.0%
!! CAATAAAAAAAAAATATATA+AGG - Chr2:83377497-83377516 MsG0280011388.01.T01:intron 5.0%
!!! AATTTTAATCAATTATTATA+TGG - Chr2:83376035-83376054 MsG0280011388.01.T01:intron 5.0%
!!! ATTTTAATCAATTATTATAT+GGG - Chr2:83376036-83376055 MsG0280011388.01.T01:intron 5.0%
!!! TTTTTATTTTTGTATTTTTA+GGG - Chr2:83375995-83376014 MsG0280011388.01.T01:intron 5.0%
!!! TTTTTTATTTTTGTATTTTT+AGG - Chr2:83375994-83376013 MsG0280011388.01.T01:intron 5.0%
ACAATCTCTCCTGCGCGAAT+TGG + Chr2:83376924-83376943 None:intergenic 50.0%
ACCCACACCCAAATCAAGCT+TGG + Chr2:83377411-83377430 None:intergenic 50.0%
AGTAAGGATCCAATTCGCGC+AGG - Chr2:83376912-83376931 MsG0280011388.01.T01:intron 50.0%
CATGCCTGAAGCAGAACACA+AGG + Chr2:83376579-83376598 None:intergenic 50.0%
GACAGGCTACTGTATGCTCA+TGG - Chr2:83378007-83378026 MsG0280011388.01.T01:intron 50.0%
GGGAAAGAGAGAACTGACCA+AGG + Chr2:83375837-83375856 None:intergenic 50.0%
TCGGAATCTCTCGTCCCTAA+AGG + Chr2:83377103-83377122 None:intergenic 50.0%
TGAAAGAGGAGATACTGGGG+AGG - Chr2:83377772-83377791 MsG0280011388.01.T01:intron 50.0%
TGTATGCTCATGGCCAGCTT+TGG - Chr2:83378017-83378036 MsG0280011388.01.T01:intron 50.0%
! TGTTCACAGTGCTGGATGGA+GGG - Chr2:83377308-83377327 MsG0280011388.01.T01:intron 50.0%
! TTGTTCACAGTGCTGGATGG+AGG - Chr2:83377307-83377326 MsG0280011388.01.T01:intron 50.0%
!! GCTGCAAAGGCACCACATTA+TGG - Chr2:83378039-83378058 MsG0280011388.01.T01:intron 50.0%
CAAGGCTAACAGCCTGAGTG+AGG + Chr2:83375819-83375838 None:intergenic 55.0%
! ATGGCCAGCTTTGGCTGCAA+AGG - Chr2:83378026-83378045 MsG0280011388.01.T01:intron 55.0%
! CTCACTCAGGCTGTTAGCCT+TGG - Chr2:83375817-83375836 MsG0280011388.01.T01:CDS 55.0%
CAGCCTGAGTGAGGACCTGA+CGG + Chr2:83375810-83375829 None:intergenic 60.0%
GATCCGTCAGGTCCTCACTC+AGG - Chr2:83375804-83375823 MsG0280011388.01.T01:CDS 60.0%
GGTGCCTTTGCAGCCAAAGC+TGG + Chr2:83378033-83378052 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 83375660 83378868 83375660 ID=MsG0280011388.01;Name=MsG0280011388.01
Chr2 mRNA 83375660 83378868 83375660 ID=MsG0280011388.01.T01;Parent=MsG0280011388.01;Name=MsG0280011388.01.T01;_AED=0.39;_eAED=0.39;_QI=100|0.83|1|1|1|1|7|134|168
Chr2 exon 83378690 83378868 83378690 ID=MsG0280011388.01.T01:exon:14796;Parent=MsG0280011388.01.T01
Chr2 exon 83377822 83377934 83377822 ID=MsG0280011388.01.T01:exon:14797;Parent=MsG0280011388.01.T01
Chr2 exon 83377569 83377640 83377569 ID=MsG0280011388.01.T01:exon:14798;Parent=MsG0280011388.01.T01
Chr2 exon 83376716 83376761 83376716 ID=MsG0280011388.01.T01:exon:14799;Parent=MsG0280011388.01.T01
Chr2 exon 83376454 83376541 83376454 ID=MsG0280011388.01.T01:exon:14800;Parent=MsG0280011388.01.T01
Chr2 exon 83376096 83376153 83376096 ID=MsG0280011388.01.T01:exon:14801;Parent=MsG0280011388.01.T01
Chr2 exon 83375660 83375844 83375660 ID=MsG0280011388.01.T01:exon:14802;Parent=MsG0280011388.01.T01
Chr2 five_prime_UTR 83378769 83378868 83378769 ID=MsG0280011388.01.T01:five_prime_utr;Parent=MsG0280011388.01.T01
Chr2 CDS 83378690 83378768 83378690 ID=MsG0280011388.01.T01:cds;Parent=MsG0280011388.01.T01
Chr2 CDS 83377822 83377934 83377822 ID=MsG0280011388.01.T01:cds;Parent=MsG0280011388.01.T01
Chr2 CDS 83377569 83377640 83377569 ID=MsG0280011388.01.T01:cds;Parent=MsG0280011388.01.T01
Chr2 CDS 83376716 83376761 83376716 ID=MsG0280011388.01.T01:cds;Parent=MsG0280011388.01.T01
Chr2 CDS 83376454 83376541 83376454 ID=MsG0280011388.01.T01:cds;Parent=MsG0280011388.01.T01
Chr2 CDS 83376096 83376153 83376096 ID=MsG0280011388.01.T01:cds;Parent=MsG0280011388.01.T01
Chr2 CDS 83375794 83375844 83375794 ID=MsG0280011388.01.T01:cds;Parent=MsG0280011388.01.T01
Chr2 three_prime_UTR 83375660 83375793 83375660 ID=MsG0280011388.01.T01:three_prime_utr;Parent=MsG0280011388.01.T01
Gene Sequence

>MsG0280011388.01.T01

ATGGGTTTCGTTGGTGACACTGTCGATTCCATCAAATCTCTTCAGATCCGTCAGGTCCTCACTCAGGCTGTTAGCCTTGGCATGATTGTTACGTCTGCACTGATAATATGGAAGGCATTGATGTGCATCACTGGCAGTGAATCTCCTGTTGTCGTTGTTCTTTCTGGAAGTATGGAACCGGGATTCAAACGTGGGGACATCTTGTTCTTACACATGAGTAAGGATCCAATTCGCGCAGGAGAGATTGTTGTATTTAATATAGATGTACATGAAAGAGGAGATACTGGGGAGGTTGATGTTCTCACAAAAGGAGATAACAACTATGGGGATGACAGGCTACTGTATGCTCATGGCCAGCTTTGGCTGCAAAGGCACCACATTATGGGTAGAGCTGTTGGGTTCTTACCTTATGTTGGCTGGGTGACAATTATCATGACTGAAAAACCTATCATCAAGTATATTCTCATCGGTGCTTTGGGGTTGCTCGTGATAACTTCAAAAGAGTAA

Protein sequence

>MsG0280011388.01.T01

MGFVGDTVDSIKSLQIRQVLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNIDVHERGDTGEVDVLTKGDNNYGDDRLLYAHGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKE*