AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040722.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040722.01.T01 MTR_7g096640 95.890 146 6 0 11 156 1 146 1.05e-96 280
MsG0780040722.01.T01 MTR_1g070190 79.195 149 31 0 11 159 1 149 4.46e-83 246
MsG0780040722.01.T01 MTR_7g096640 85.714 105 13 1 11 113 1 105 8.07e-56 175
MsG0780040722.01.T01 MTR_1g073940 53.896 154 68 1 11 161 1 154 2.61e-49 160
MsG0780040722.01.T01 MTR_1g073940 45.517 145 76 1 20 161 25 169 2.09e-37 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040722.01.T01 AT4G14420 64.238 151 53 1 11 160 1 151 4.65e-57 180
MsG0780040722.01.T01 AT1G04340 52.866 157 67 1 11 160 1 157 3.25e-51 165
MsG0780040722.01.T01 AT5G43460 53.205 156 63 2 11 160 1 152 2.96e-48 157
MsG0780040722.01.T01 AT5G43460 53.205 156 63 2 11 160 1 152 2.96e-48 157
MsG0780040722.01.T01 AT3G23190 43.590 117 49 3 18 134 25 124 3.03e-18 81.3
MsG0780040722.01.T01 AT3G23175 29.560 159 92 4 10 161 19 164 1.80e-11 61.6
MsG0780040722.01.T01 AT3G23180 32.203 118 67 2 17 134 24 128 3.74e-11 61.6
MsG0780040722.01.T01 AT3G23180 32.203 118 67 2 17 134 24 128 3.74e-11 61.6

Find 51 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCTTGGGTTGCCTTCT+AGG 0.178529 7:-81623217 None:intergenic
TGCAGAATATGGCTCTCTTT+GGG 0.236034 7:+81623158 MsG0780040722.01.T01:intron
GATTCTCTCTTTCTCTTCAA+TGG 0.257527 7:+81620660 MsG0780040722.01.T01:intron
GTTCCCCGCTTTGATTTCTT+TGG 0.258276 7:+81623637 MsG0780040722.01.T01:CDS
TTGCAGAATATGGCTCTCTT+TGG 0.263350 7:+81623157 MsG0780040722.01.T01:intron
TCTAGCGAATTCGATATTAA+AGG 0.285769 7:+81623571 MsG0780040722.01.T01:CDS
GAGAGACTAACATCAATTTC+TGG 0.293736 7:-81621678 None:intergenic
CCACCAAGTATTGTATTTGT+AGG 0.318718 7:+81623378 MsG0780040722.01.T01:CDS
TCGTGTTTGTTCAGTATTGC+AGG 0.351398 7:+81623676 MsG0780040722.01.T01:CDS
CCTCACAGATTTAATGACTA+TGG 0.351977 7:+81621567 MsG0780040722.01.T01:intron
TTCATACTTGGCACTTCGTT+CGG 0.363083 7:+81622815 MsG0780040722.01.T01:CDS
TTAATATCGAATTCGCTAGA+AGG 0.374274 7:-81623568 None:intergenic
TTTAATGACTATGGAGTTGA+TGG 0.390244 7:+81621576 MsG0780040722.01.T01:CDS
TGTTCAGTATTGCAGGAGTT+TGG 0.393899 7:+81623683 MsG0780040722.01.T01:CDS
TTCGTTCGGAGCTGTACTTT+TGG 0.395340 7:+81622829 MsG0780040722.01.T01:CDS
GTTATTGCTCTCAAGGGCAT+TGG 0.407224 7:+81622782 MsG0780040722.01.T01:CDS
GGATCTGGCTAGTGCTTGTC+TGG 0.410188 7:+81623338 MsG0780040722.01.T01:intron
AAACACGAAGTCAGATGAAA+AGG 0.419539 7:-81623661 None:intergenic
CTTGGGTTGCCTTCTAGGAA+TGG 0.420002 7:-81623212 None:intergenic
TTATAGAAATCGTACAATAT+TGG 0.422653 7:-81622959 None:intergenic
TGAATCTACTTTGTGTAAGA+AGG 0.424918 7:-81621637 None:intergenic
TGCTGGGGTTATTGCTCTCA+AGG 0.437521 7:+81622775 MsG0780040722.01.T01:CDS
TGTAAGAAGGCATCAAACTT+TGG 0.456330 7:-81621624 None:intergenic
CACAAAGTAGATTCACAAGT+TGG 0.457902 7:+81621645 MsG0780040722.01.T01:CDS
ATATTGGAGTAGTGATCAAC+TGG 0.470681 7:-81622943 None:intergenic
TAGAAGGCAACCCAAGAAGA+AGG 0.484408 7:+81623219 MsG0780040722.01.T01:CDS
ATTGCTCTCAAGGGCATTGG+AGG 0.493492 7:+81622785 MsG0780040722.01.T01:CDS
ACACCTACAAATACAATACT+TGG 0.510097 7:-81623381 None:intergenic
GCAGAATATGGCTCTCTTTG+GGG 0.511395 7:+81623159 MsG0780040722.01.T01:intron
GGCTAGTGCTTGTCTGGCAC+CGG 0.519486 7:+81623344 MsG0780040722.01.T01:CDS
AACACGAAGTCAGATGAAAA+GGG 0.521503 7:-81623660 None:intergenic
AGGGCCAAAGAAATCAAAGC+GGG 0.525573 7:-81623641 None:intergenic
TTAATGACTATGGAGTTGAT+GGG 0.525574 7:+81621577 MsG0780040722.01.T01:CDS
CCTACAAATACAATACTTGG+TGG 0.545122 7:-81623378 None:intergenic
CTACAAATACAATACTTGGT+GGG 0.548227 7:-81623377 None:intergenic
TACAAATACAATACTTGGTG+GGG 0.553539 7:-81623376 None:intergenic
GTAAGCAGAGAGAATGAAAA+CGG 0.579263 7:-81620719 None:intergenic
TAATGACTATGGAGTTGATG+GGG 0.592110 7:+81621578 MsG0780040722.01.T01:CDS
TACAACAGCAACTTCAATGA+CGG 0.603062 7:-81623608 None:intergenic
CTTGGTGGGGAGATTTGTGC+CGG 0.603568 7:-81623363 None:intergenic
TTGCTCTCAAGGGCATTGGA+GGG 0.604788 7:+81622786 MsG0780040722.01.T01:CDS
GCTGGGGTTATTGCTCTCAA+GGG 0.606837 7:+81622776 MsG0780040722.01.T01:CDS
AAAGAAGAGGATGGATCACA+AGG 0.631078 7:+81619242 None:intergenic
AATGACTATGGAGTTGATGG+GGG 0.635035 7:+81621579 MsG0780040722.01.T01:CDS
TTTCTATAACTACGACAATG+AGG 0.635962 7:+81622973 MsG0780040722.01.T01:CDS
TATTAAAGGTCATAAAAGTG+TGG 0.654161 7:+81623585 MsG0780040722.01.T01:CDS
GGTGTAGCATCAGTCTCACA+TGG 0.672660 7:+81623399 MsG0780040722.01.T01:CDS
GGGCCAAAGAAATCAAAGCG+GGG 0.690924 7:-81623640 None:intergenic
AAGGGCCAAAGAAATCAAAG+CGG 0.740752 7:-81623642 None:intergenic
AGCAGAGAGAATGAAAACGG+AGG 0.744123 7:-81620716 None:intergenic
AGTTAAGAACAAAATCACAG+TGG 0.780975 7:-81623721 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTTATACATAAATATAAAT+TGG + Chr7:81619436-81619455 MsG0780040722.01.T01:intron 10.0%
!! TAACTAAAGATATTAATTAA+TGG - Chr7:81622002-81622021 None:intergenic 10.0%
!!! GTAATTTTATTTAAAAACTA+AGG + Chr7:81619264-81619283 MsG0780040722.01.T01:intron 10.0%
!!! GTTAACTTTTTTTTTTTTTT+TGG - Chr7:81619652-81619671 None:intergenic 10.0%
!!! TAATTTTGTTTTATAAGTTT+TGG + Chr7:81620270-81620289 MsG0780040722.01.T01:intron 10.0%
!!! TCTAAATTTTAAAAATTTTC+CGG - Chr7:81621017-81621036 None:intergenic 10.0%
!! TCAATTAAGACTATTATATT+GGG + Chr7:81622165-81622184 MsG0780040722.01.T01:intron 15.0%
!! TGTTACAATTGTTTATTAAA+TGG + Chr7:81623120-81623139 MsG0780040722.01.T01:intron 15.0%
!! TTCAATTAAGACTATTATAT+TGG + Chr7:81622164-81622183 MsG0780040722.01.T01:intron 15.0%
!!! ATGTAATTTTCTTTTGTTTT+TGG + Chr7:81619607-81619626 MsG0780040722.01.T01:intron 15.0%
!!! GATTTAAATTTAAAACAACA+AGG + Chr7:81621749-81621768 MsG0780040722.01.T01:intron 15.0%
!!! TAGCTTGAATTTTTTTAAAA+TGG - Chr7:81620174-81620193 None:intergenic 15.0%
!!! TGTAATTTTCTTTTGTTTTT+GGG + Chr7:81619608-81619627 MsG0780040722.01.T01:intron 15.0%
!!! TTCTTATATTATTTTTTGAG+AGG + Chr7:81619756-81619775 MsG0780040722.01.T01:intron 15.0%
!!! TTTTTAATGTATTTTCATGT+TGG + Chr7:81623057-81623076 MsG0780040722.01.T01:intron 15.0%
!! ACTATTATATTGGGTATATA+AGG + Chr7:81622174-81622193 MsG0780040722.01.T01:intron 20.0%
!! AGAAAAAAACCATATTAAAC+AGG - Chr7:81622907-81622926 None:intergenic 20.0%
!! CAATTGTTTATTAAATGGTA+TGG + Chr7:81623125-81623144 MsG0780040722.01.T01:intron 20.0%
!! CGTATAATTAGTATTATGTT+GGG - Chr7:81622273-81622292 None:intergenic 20.0%
!! GAAAAAAACCATATTAAACA+GGG - Chr7:81622906-81622925 None:intergenic 20.0%
!! GGTATATTAATTAGAAAGTT+CGG - Chr7:81619864-81619883 None:intergenic 20.0%
!! TCATTAATTGAACTAAACTT+TGG + Chr7:81621142-81621161 MsG0780040722.01.T01:intron 20.0%
!! TCGTATAATTAGTATTATGT+TGG - Chr7:81622274-81622293 None:intergenic 20.0%
!! TTATAGAAATCGTACAATAT+TGG - Chr7:81622962-81622981 None:intergenic 20.0%
!!! AGATTTTATATCTTTCTTTG+AGG + Chr7:81621248-81621267 MsG0780040722.01.T01:intron 20.0%
!!! AGGTTTAATATTCTTTAGAA+TGG + Chr7:81619776-81619795 MsG0780040722.01.T01:intron 20.0%
!!! ATGATAGTCTATTTTTCAAA+TGG - Chr7:81622304-81622323 None:intergenic 20.0%
!!! GATTTTATATCTTTCTTTGA+GGG + Chr7:81621249-81621268 MsG0780040722.01.T01:intron 20.0%
!!! GTTTAAAATCTTATTTAAGC+TGG + Chr7:81621203-81621222 MsG0780040722.01.T01:intron 20.0%
!!! TGTTTAATTTTTAGCTAAGT+TGG + Chr7:81621347-81621366 MsG0780040722.01.T01:intron 20.0%
!!! TTTTTAAAATGGAAACTAGA+AGG - Chr7:81620163-81620182 None:intergenic 20.0%
!!! TTTTTTTTTGGATCATAAGA+GGG - Chr7:81619640-81619659 None:intergenic 20.0%
!!! TTTTTTTTTTGGATCATAAG+AGG - Chr7:81619641-81619660 None:intergenic 20.0%
! AAAAAGAAAGAACAAACTCT+TGG - Chr7:81620744-81620763 None:intergenic 25.0%
! AAAGTAATATGCATGTGAAA+AGG - Chr7:81622681-81622700 None:intergenic 25.0%
! AAATTCATAGATTAGCAAGT+GGG - Chr7:81620305-81620324 None:intergenic 25.0%
! AACACATAGATGTAGATAAA+AGG - Chr7:81622646-81622665 None:intergenic 25.0%
! AATTACATCTTAATCAATCG+AGG - Chr7:81619595-81619614 None:intergenic 25.0%
! ACAAGAATACAGTAAAACAA+GGG + Chr7:81620392-81620411 MsG0780040722.01.T01:intron 25.0%
! ATGATACAAATCAACATCAT+TGG + Chr7:81619884-81619903 MsG0780040722.01.T01:intron 25.0%
! ATTAACGTATACTGCTAAAA+AGG + Chr7:81622340-81622359 MsG0780040722.01.T01:intron 25.0%
! CAAAATGAGTCTTGAAATTT+CGG - Chr7:81623271-81623290 None:intergenic 25.0%
! GTTTGTGGATATAATGAATT+CGG - Chr7:81619499-81619518 None:intergenic 25.0%
! TAAATTCATAGATTAGCAAG+TGG - Chr7:81620306-81620325 None:intergenic 25.0%
! TAATAATGAAGTGATAAGGT+GGG + Chr7:81622224-81622243 MsG0780040722.01.T01:intron 25.0%
! TATTAAAGGTCATAAAAGTG+TGG + Chr7:81623585-81623604 MsG0780040722.01.T01:CDS 25.0%
! TGAAAAATAGACTATCATGT+AGG + Chr7:81622306-81622325 MsG0780040722.01.T01:intron 25.0%
! TGAAAATAAACTCAATTGCA+AGG - Chr7:81622874-81622893 None:intergenic 25.0%
! TGAGCTTATGAATAAAACTA+AGG - Chr7:81621170-81621189 None:intergenic 25.0%
! TTATATTGGGTATATAAGGT+TGG + Chr7:81622178-81622197 MsG0780040722.01.T01:intron 25.0%
! TTATGAGTGTTCTAACTAAT+AGG + Chr7:81621108-81621127 MsG0780040722.01.T01:intron 25.0%
!! ATAAAATCTAAAGTCCAGTT+TGG - Chr7:81621237-81621256 None:intergenic 25.0%
!! TAAATTCTTGTTGTATCGTT+TGG + Chr7:81620847-81620866 MsG0780040722.01.T01:intron 25.0%
!! TACTTTTCGCTTCTAATAAT+GGG - Chr7:81620471-81620490 None:intergenic 25.0%
!! TGTCTCTATATTCTTGTTTA+TGG + Chr7:81619459-81619478 MsG0780040722.01.T01:intron 25.0%
!! TTATGTGTTATTGTTAAGCT+GGG + Chr7:81620984-81621003 MsG0780040722.01.T01:intron 25.0%
!!! AACTTTTTCATTTGAATGAG+TGG - Chr7:81621067-81621086 None:intergenic 25.0%
!!! AATGATGTTGATTTGTATCA+TGG - Chr7:81619885-81619904 None:intergenic 25.0%
!!! AATTTTTATTTGTACCGAGA+AGG + Chr7:81620499-81620518 MsG0780040722.01.T01:intron 25.0%
!!! AGATAAAGTTTTTAGTTGCT+GGG + Chr7:81622759-81622778 MsG0780040722.01.T01:intron 25.0%
!!! AGATTCTGTTTTTTGAAATG+TGG + Chr7:81623524-81623543 MsG0780040722.01.T01:intron 25.0%
!!! ATTTTGATTTCTGATTGATG+TGG + Chr7:81621302-81621321 MsG0780040722.01.T01:intron 25.0%
!!! CTAATCATTTTAACTCCTTT+TGG - Chr7:81623506-81623525 None:intergenic 25.0%
AAAATGAATTCAATACCTCG+AGG - Chr7:81619956-81619975 None:intergenic 30.0%
AAATCATACGTCATTTGAAG+TGG + Chr7:81619392-81619411 MsG0780040722.01.T01:intron 30.0%
AACATGTATTTAGGAATGGA+GGG - Chr7:81621940-81621959 None:intergenic 30.0%
AATTAGTATTATGTTGGGAG+TGG - Chr7:81622268-81622287 None:intergenic 30.0%
ACAATTGTAACAATACACGA+AGG - Chr7:81623112-81623131 None:intergenic 30.0%
ACACCTACAAATACAATACT+TGG - Chr7:81623384-81623403 None:intergenic 30.0%
ACTTCAAATGACGTATGATT+TGG - Chr7:81619393-81619412 None:intergenic 30.0%
ATCGCATTTGATCAGAAATT+TGG + Chr7:81621457-81621476 MsG0780040722.01.T01:intron 30.0%
CACAAGAATACAGTAAAACA+AGG + Chr7:81620391-81620410 MsG0780040722.01.T01:intron 30.0%
CATAGTCATTAAATCTGTGA+GGG - Chr7:81621569-81621588 None:intergenic 30.0%
CTAATAATGAAGTGATAAGG+TGG + Chr7:81622223-81622242 MsG0780040722.01.T01:intron 30.0%
CTACAAATACAATACTTGGT+GGG - Chr7:81623380-81623399 None:intergenic 30.0%
CTACAACATGTATTTAGGAA+TGG - Chr7:81621944-81621963 None:intergenic 30.0%
GAAGTTATGAAACATCACAA+TGG + Chr7:81622570-81622589 MsG0780040722.01.T01:intron 30.0%
GAGCTAATAATGAAGTGATA+AGG + Chr7:81622220-81622239 MsG0780040722.01.T01:intron 30.0%
GCATTCAATATGTAACTGAA+GGG + Chr7:81620917-81620936 MsG0780040722.01.T01:intron 30.0%
GTTGACTACAACATGTATTT+AGG - Chr7:81621949-81621968 None:intergenic 30.0%
TCTAGCGAATTCGATATTAA+AGG + Chr7:81623571-81623590 MsG0780040722.01.T01:CDS 30.0%
TGAATCTACTTTGTGTAAGA+AGG - Chr7:81621640-81621659 None:intergenic 30.0%
TGAGATCCCAAAATTATGAT+GGG - Chr7:81622432-81622451 None:intergenic 30.0%
TGCATTCAATATGTAACTGA+AGG + Chr7:81620916-81620935 MsG0780040722.01.T01:intron 30.0%
TGTTGTTAACTGGTATACTT+TGG + Chr7:81619559-81619578 MsG0780040722.01.T01:intron 30.0%
TTAATATCGAATTCGCTAGA+AGG - Chr7:81623571-81623590 None:intergenic 30.0%
TTAGTAACAGAACCACTTTA+GGG - Chr7:81619349-81619368 None:intergenic 30.0%
TTCAGTTGACATGTGAATTA+TGG + Chr7:81621494-81621513 MsG0780040722.01.T01:intron 30.0%
TTCCGTTATCATCAAGTATA+GGG + Chr7:81621854-81621873 MsG0780040722.01.T01:intron 30.0%
TTTAATGACTATGGAGTTGA+TGG + Chr7:81621576-81621595 MsG0780040722.01.T01:CDS 30.0%
TTTCCGTTATCATCAAGTAT+AGG + Chr7:81621853-81621872 MsG0780040722.01.T01:intron 30.0%
TTTCTATAACTACGACAATG+AGG + Chr7:81622973-81622992 MsG0780040722.01.T01:CDS 30.0%
TTTGATACTACTTAGGAGTT+TGG + Chr7:81621815-81621834 MsG0780040722.01.T01:intron 30.0%
! AATGGACTTTGATACTACTT+AGG + Chr7:81621808-81621827 MsG0780040722.01.T01:intron 30.0%
! ATCCCTATACTTGATGATAA+CGG - Chr7:81621859-81621878 None:intergenic 30.0%
! ATTGCATTTTACGACAAACT+TGG - Chr7:81620444-81620463 None:intergenic 30.0%
! GTTATGTGTTATTGTTAAGC+TGG + Chr7:81620983-81621002 MsG0780040722.01.T01:intron 30.0%
! TACAAATACAATACTTGGTG+GGG - Chr7:81623379-81623398 None:intergenic 30.0%
! TCATATTGTCTTTTCCTTCT+CGG - Chr7:81620516-81620535 None:intergenic 30.0%
! TTAATGACTATGGAGTTGAT+GGG + Chr7:81621577-81621596 MsG0780040722.01.T01:CDS 30.0%
!! AATCTAGTAAGTACTGAAGT+TGG + Chr7:81620364-81620383 MsG0780040722.01.T01:intron 30.0%
!! CTACTTTTCGCTTCTAATAA+TGG - Chr7:81620472-81620491 None:intergenic 30.0%
!! GTTAGACATTTGTTGTTAAC+TGG + Chr7:81619549-81619568 MsG0780040722.01.T01:intron 30.0%
!! TATGATTTGGAGAAGTATCA+TGG - Chr7:81619380-81619399 None:intergenic 30.0%
!! TCATAGTTTGTTAACGTTTG+TGG - Chr7:81619514-81619533 None:intergenic 30.0%
!!! ATCATTTTAACTCCTTTTGG+CGG - Chr7:81623503-81623522 None:intergenic 30.0%
!!! CACTAATTATTTTAGCCATG+AGG + Chr7:81622384-81622403 MsG0780040722.01.T01:intron 30.0%
!!! CAGATAAAGTTTTTAGTTGC+TGG + Chr7:81622758-81622777 MsG0780040722.01.T01:intron 30.0%
!!! CTTGTTTTACTGTATTCTTG+TGG - Chr7:81620393-81620412 None:intergenic 30.0%
!!! GATAAAGTTTTTAGTTGCTG+GGG + Chr7:81622760-81622779 MsG0780040722.01.T01:intron 30.0%
!!! GGGCTTTGTTGTTTTTTATT+GGG + Chr7:81623179-81623198 MsG0780040722.01.T01:CDS 30.0%
AAACACGAAGTCAGATGAAA+AGG - Chr7:81623664-81623683 None:intergenic 35.0%
AAATAGACTATCATGTAGGC+TGG + Chr7:81622310-81622329 MsG0780040722.01.T01:intron 35.0%
AAATCAAAATCCACGAGCAA+TGG - Chr7:81621292-81621311 None:intergenic 35.0%
AACACGAAGTCAGATGAAAA+GGG - Chr7:81623663-81623682 None:intergenic 35.0%
ACTTCTCCACTAAGTGTAAT+TGG + Chr7:81619298-81619317 MsG0780040722.01.T01:intron 35.0%
AGAATACAGTAAAACAAGGG+AGG + Chr7:81620395-81620414 MsG0780040722.01.T01:intron 35.0%
ATATTGGAGTAGTGATCAAC+TGG - Chr7:81622946-81622965 None:intergenic 35.0%
CAACATGTATTTAGGAATGG+AGG - Chr7:81621941-81621960 None:intergenic 35.0%
CACAAAGTAGATTCACAAGT+TGG + Chr7:81621645-81621664 MsG0780040722.01.T01:CDS 35.0%
CAGTGAAGTGAAGTCTTAAA+TGG + Chr7:81621790-81621809 MsG0780040722.01.T01:intron 35.0%
CCATAGTCATTAAATCTGTG+AGG - Chr7:81621570-81621589 None:intergenic 35.0%
CCTACAAATACAATACTTGG+TGG - Chr7:81623381-81623400 None:intergenic 35.0%
CCTCACAGATTTAATGACTA+TGG + Chr7:81621567-81621586 MsG0780040722.01.T01:intron 35.0%
CTGAGATCCCAAAATTATGA+TGG - Chr7:81622433-81622452 None:intergenic 35.0%
GAAGAGAAAGAGAGAATCTA+GGG - Chr7:81620658-81620677 None:intergenic 35.0%
GAGAGACTAACATCAATTTC+TGG - Chr7:81621681-81621700 None:intergenic 35.0%
GATTCTCTCTTTCTCTTCAA+TGG + Chr7:81620660-81620679 MsG0780040722.01.T01:intron 35.0%
GTAAGCAGAGAGAATGAAAA+CGG - Chr7:81620722-81620741 None:intergenic 35.0%
GTATTACTCCTTGCAGAATA+TGG + Chr7:81623147-81623166 MsG0780040722.01.T01:intron 35.0%
GTTAGTAACAGAACCACTTT+AGG - Chr7:81619350-81619369 None:intergenic 35.0%
GTTATCATCAAGTATAGGGA+TGG + Chr7:81621858-81621877 MsG0780040722.01.T01:intron 35.0%
TACAACAGCAACTTCAATGA+CGG - Chr7:81623611-81623630 None:intergenic 35.0%
TACTTACTAGATTCTTCACG+AGG - Chr7:81620357-81620376 None:intergenic 35.0%
TCAAGCAAACATAAACCTCA+TGG - Chr7:81622402-81622421 None:intergenic 35.0%
TCGTTCATTCAGTAGATCTA+CGG + Chr7:81620877-81620896 MsG0780040722.01.T01:intron 35.0%
TGAAAAACTCCATTCCTAGA+AGG + Chr7:81623203-81623222 MsG0780040722.01.T01:CDS 35.0%
TGAAGAGAAAGAGAGAATCT+AGG - Chr7:81620659-81620678 None:intergenic 35.0%
TTAAAAAGATAGTGAGCCCA+TGG - Chr7:81623044-81623063 None:intergenic 35.0%
TTATGCCTTCGTAAATGCAT+GGG + Chr7:81622141-81622160 MsG0780040722.01.T01:intron 35.0%
TTGAAATTTCGGCTACTAGT+AGG - Chr7:81623260-81623279 None:intergenic 35.0%
! AAAGTGGTTCTGTTACTAAC+AGG + Chr7:81619350-81619369 MsG0780040722.01.T01:intron 35.0%
! ACAGCTTCTGAAAACTGAAA+TGG + Chr7:81622522-81622541 MsG0780040722.01.T01:intron 35.0%
! ACTTTTCATCAAGTTCACAC+AGG + Chr7:81623012-81623031 MsG0780040722.01.T01:CDS 35.0%
! ATACGTCATTTGAAGTGGTT+TGG + Chr7:81619397-81619416 MsG0780040722.01.T01:intron 35.0%
! ATTTTACGACAAACTTGGAC+TGG - Chr7:81620439-81620458 None:intergenic 35.0%
! CAGCTTCTGAAAACTGAAAT+GGG + Chr7:81622523-81622542 MsG0780040722.01.T01:intron 35.0%
! CCACCAAGTATTGTATTTGT+AGG + Chr7:81623378-81623397 MsG0780040722.01.T01:CDS 35.0%
! GGAGTATTAAGTACTCTTGT+AGG - Chr7:81621919-81621938 None:intergenic 35.0%
! TCAAGACTCATTTTGCAAGA+AGG + Chr7:81623276-81623295 MsG0780040722.01.T01:intron 35.0%
! TGCTTGCCCATCATAATTTT+GGG + Chr7:81622423-81622442 MsG0780040722.01.T01:intron 35.0%
! TTCAGTTTTCAGAAGCTGTA+TGG - Chr7:81622521-81622540 None:intergenic 35.0%
! TTGGGTATATAAGGTTGGTT+TGG + Chr7:81622183-81622202 MsG0780040722.01.T01:intron 35.0%
! TTGTATTGACATGTGTGAAG+TGG - Chr7:81621971-81621990 None:intergenic 35.0%
! TTGTTCTTTTGCTCGACATT+AGG + Chr7:81623451-81623470 MsG0780040722.01.T01:intron 35.0%
! TTTGATCAGAAATTTGGAGC+TGG + Chr7:81621463-81621482 MsG0780040722.01.T01:intron 35.0%
!! GAGGGTTGATAAAGATGTTA+GGG + Chr7:81622548-81622567 MsG0780040722.01.T01:intron 35.0%
!! TAATGACTATGGAGTTGATG+GGG + Chr7:81621578-81621597 MsG0780040722.01.T01:CDS 35.0%
!! TGTAAGAAGGCATCAAACTT+TGG - Chr7:81621627-81621646 None:intergenic 35.0%
!!! CATCATAATTTTGGGATCTC+AGG + Chr7:81622431-81622450 MsG0780040722.01.T01:intron 35.0%
!!! GGGGCTTTGTTGTTTTTTAT+TGG + Chr7:81623178-81623197 MsG0780040722.01.T01:CDS 35.0%
!!! GTTTTGGAAACCTTCTTCTT+GGG - Chr7:81623232-81623251 None:intergenic 35.0%
!!! TATAGTTTTATGCGAGTGTG+TGG - Chr7:81619697-81619716 None:intergenic 35.0%
AAAGAGAGCCATATTCTGCA+AGG - Chr7:81623158-81623177 None:intergenic 40.0%
AAGGGCCAAAGAAATCAAAG+CGG - Chr7:81623645-81623664 None:intergenic 40.0%
AATGGGAATACTGATCAACC+AGG - Chr7:81623305-81623324 None:intergenic 40.0%
ACTAAGTGTAATTGGTGGGA+TGG + Chr7:81619306-81619325 MsG0780040722.01.T01:intron 40.0%
AGTATTATGTTGGGAGTGGA+AGG - Chr7:81622264-81622283 None:intergenic 40.0%
AGTCATTAAATCTGTGAGGG+AGG - Chr7:81621566-81621585 None:intergenic 40.0%
ATCCCACCAATTACACTTAG+TGG - Chr7:81619307-81619326 None:intergenic 40.0%
ATCCTGGAAAGTTGAGGAAT+GGG - Chr7:81623322-81623341 None:intergenic 40.0%
ATGGGAATACTGATCAACCA+GGG - Chr7:81623304-81623323 None:intergenic 40.0%
CAGGAAGCAGTATGATATGA+TGG + Chr7:81622450-81622469 MsG0780040722.01.T01:intron 40.0%
CTAAGTGTAATTGGTGGGAT+GGG + Chr7:81619307-81619326 MsG0780040722.01.T01:intron 40.0%
CTCCACTAAGTGTAATTGGT+GGG + Chr7:81619302-81619321 MsG0780040722.01.T01:intron 40.0%
CTCTAGTGCCCTGTTTAATA+TGG + Chr7:81622895-81622914 MsG0780040722.01.T01:intron 40.0%
GAAGCAGTATGATATGATGG+TGG + Chr7:81622453-81622472 MsG0780040722.01.T01:intron 40.0%
GTTATGCCTTCGTAAATGCA+TGG + Chr7:81622140-81622159 MsG0780040722.01.T01:intron 40.0%
TCGTGTTTGTTCAGTATTGC+AGG + Chr7:81623676-81623695 MsG0780040722.01.T01:CDS 40.0%
TCTCCACTAAGTGTAATTGG+TGG + Chr7:81619301-81619320 MsG0780040722.01.T01:intron 40.0%
TGAAAACGAGAGTGATGAGT+GGG - Chr7:81620548-81620567 None:intergenic 40.0%
TGAAAACTGAAATGGGTGGA+GGG + Chr7:81622530-81622549 MsG0780040722.01.T01:intron 40.0%
TGCAGAATATGGCTCTCTTT+GGG + Chr7:81623158-81623177 MsG0780040722.01.T01:intron 40.0%
TGTTAAGCTGGGAAATTAGC+CGG + Chr7:81620995-81621014 MsG0780040722.01.T01:intron 40.0%
TGTTCAGTATTGCAGGAGTT+TGG + Chr7:81623683-81623702 MsG0780040722.01.T01:CDS 40.0%
TTCATACTTGGCACTTCGTT+CGG + Chr7:81622815-81622834 MsG0780040722.01.T01:CDS 40.0%
TTCATAGATTAGCAAGTGGG+TGG - Chr7:81620302-81620321 None:intergenic 40.0%
TTGAAAACGAGAGTGATGAG+TGG - Chr7:81620549-81620568 None:intergenic 40.0%
TTGAACCCATGCATTTACGA+AGG - Chr7:81622149-81622168 None:intergenic 40.0%
TTGCAGAATATGGCTCTCTT+TGG + Chr7:81623157-81623176 MsG0780040722.01.T01:intron 40.0%
! ATGGCTTTCGCTTCTTTTCT+CGG + Chr7:81620679-81620698 MsG0780040722.01.T01:CDS 40.0%
! CTCTCGTTTTCAATTTTCGC+TGG + Chr7:81620556-81620575 MsG0780040722.01.T01:intron 40.0%
! CTGCTTGCCCATCATAATTT+TGG + Chr7:81622422-81622441 MsG0780040722.01.T01:intron 40.0%
! CTTCTGAAAACTGAAATGGG+TGG + Chr7:81622526-81622545 MsG0780040722.01.T01:intron 40.0%
! GGAGGGATTCTTTTCATACT+TGG + Chr7:81622803-81622822 MsG0780040722.01.T01:CDS 40.0%
! GTACTTGTTGAGAAAGTTGC+CGG + Chr7:81621411-81621430 MsG0780040722.01.T01:intron 40.0%
!! AATGACTATGGAGTTGATGG+GGG + Chr7:81621579-81621598 MsG0780040722.01.T01:CDS 40.0%
!! CACTTAGTGGAGAAGTATCA+TGG - Chr7:81619294-81619313 None:intergenic 40.0%
!! GGAGGGTTGATAAAGATGTT+AGG + Chr7:81622547-81622566 MsG0780040722.01.T01:intron 40.0%
!! GGTATATAAGGTTGGTTTGG+TGG + Chr7:81622186-81622205 MsG0780040722.01.T01:intron 40.0%
!! TATAAGGTTGGTTTGGTGGT+TGG + Chr7:81622190-81622209 MsG0780040722.01.T01:intron 40.0%
AGCAGAGAGAATGAAAACGG+AGG - Chr7:81620719-81620738 None:intergenic 45.0%
AGCTGGAAGCTAATCCAAAC+TGG + Chr7:81621220-81621239 MsG0780040722.01.T01:intron 45.0%
AGGGCCAAAGAAATCAAAGC+GGG - Chr7:81623644-81623663 None:intergenic 45.0%
ATCAAGTATAGGGATGGCTG+GGG + Chr7:81621864-81621883 MsG0780040722.01.T01:intron 45.0%
CAACTGGTGCAAAAGCTACA+AGG - Chr7:81622930-81622949 None:intergenic 45.0%
CACTGTGACAGCTTGAAATC+AGG - Chr7:81623087-81623106 None:intergenic 45.0%
CAGCAAGCACTAGCAATAAC+CGG - Chr7:81621433-81621452 None:intergenic 45.0%
CATCAAGTATAGGGATGGCT+GGG + Chr7:81621863-81621882 MsG0780040722.01.T01:intron 45.0%
CGTGAATCTTGTAAACCTCG+AGG + Chr7:81619938-81619957 MsG0780040722.01.T01:intron 45.0%
CTCTATCTCATCTCTCTGAC+CGG + Chr7:81620598-81620617 MsG0780040722.01.T01:intron 45.0%
CTGAAAACTGAAATGGGTGG+AGG + Chr7:81622529-81622548 MsG0780040722.01.T01:intron 45.0%
GATCCTGGAAAGTTGAGGAA+TGG - Chr7:81623323-81623342 None:intergenic 45.0%
GCAGAATATGGCTCTCTTTG+GGG + Chr7:81623159-81623178 MsG0780040722.01.T01:intron 45.0%
TAGAAGGCAACCCAAGAAGA+AGG + Chr7:81623219-81623238 MsG0780040722.01.T01:CDS 45.0%
TCATCAAGTATAGGGATGGC+TGG + Chr7:81621862-81621881 MsG0780040722.01.T01:intron 45.0%
TCTATCTCATCTCTCTGACC+GGG + Chr7:81620599-81620618 MsG0780040722.01.T01:intron 45.0%
TGAAGTGATAAGGTGGGAGA+AGG + Chr7:81622230-81622249 MsG0780040722.01.T01:intron 45.0%
TGCTAAACTTGTCCGCCAAA+AGG + Chr7:81623488-81623507 MsG0780040722.01.T01:intron 45.0%
TTCCCATTCCTCAACTTTCC+AGG + Chr7:81623317-81623336 MsG0780040722.01.T01:intron 45.0%
TTCCTCAACTTTCCAGGATC+TGG + Chr7:81623323-81623342 MsG0780040722.01.T01:intron 45.0%
! CATTTTGCAAGAAGGTTCCC+TGG + Chr7:81623284-81623303 MsG0780040722.01.T01:intron 45.0%
! CGTCATTTGAAGTGGTTTGG+TGG + Chr7:81619400-81619419 MsG0780040722.01.T01:intron 45.0%
! GAATCTAGGGTTGAGTGAGT+TGG - Chr7:81620645-81620664 None:intergenic 45.0%
! GTTATTGCTCTCAAGGGCAT+TGG + Chr7:81622782-81622801 MsG0780040722.01.T01:CDS 45.0%
! GTTCCCCGCTTTGATTTCTT+TGG + Chr7:81623637-81623656 MsG0780040722.01.T01:CDS 45.0%
! GTTTTATGCGAGTGTGTGGT+GGG - Chr7:81619693-81619712 None:intergenic 45.0%
! TTCGTTCGGAGCTGTACTTT+TGG + Chr7:81622829-81622848 MsG0780040722.01.T01:CDS 45.0%
! TTCTTCTTGGGTTGCCTTCT+AGG - Chr7:81623220-81623239 None:intergenic 45.0%
!! AACAGAACCACTTTAGGGCT+TGG - Chr7:81619344-81619363 None:intergenic 45.0%
!! ACAGAACCACTTTAGGGCTT+GGG - Chr7:81619343-81619362 None:intergenic 45.0%
!! AGTTTTATGCGAGTGTGTGG+TGG - Chr7:81619694-81619713 None:intergenic 45.0%
!! GAAGTGGTTTGGTGGTATCA+TGG + Chr7:81619408-81619427 MsG0780040722.01.T01:intron 45.0%
!! GCAGTATGATATGATGGTGG+TGG + Chr7:81622456-81622475 MsG0780040722.01.T01:intron 45.0%
!! TATATATTAGTTAAAAAATA+TGG + Chr7:81622108-81622127 MsG0780040722.01.T01:intron 5.0%
!!! ATTTATTAATTGATTTTTTA+TGG + Chr7:81621525-81621544 MsG0780040722.01.T01:intron 5.0%
AGAGTGATGAGTGGGAGTCA+AGG - Chr7:81620540-81620559 None:intergenic 50.0%
AGCCAGATCCTGGAAAGTTG+AGG - Chr7:81623328-81623347 None:intergenic 50.0%
GAGTGATGAGTGGGAGTCAA+GGG - Chr7:81620539-81620558 None:intergenic 50.0%
GCTGGGGTTATTGCTCTCAA+GGG + Chr7:81622776-81622795 MsG0780040722.01.T01:CDS 50.0%
GGGCCAAAGAAATCAAAGCG+GGG - Chr7:81623643-81623662 None:intergenic 50.0%
GGTGTAGCATCAGTCTCACA+TGG + Chr7:81623399-81623418 MsG0780040722.01.T01:CDS 50.0%
TGCTGGGGTTATTGCTCTCA+AGG + Chr7:81622775-81622794 MsG0780040722.01.T01:CDS 50.0%
TTCACACAGGTCAGAGCCAT+GGG + Chr7:81623025-81623044 MsG0780040722.01.T01:intron 50.0%
TTTCTGATCGCCATTGCTCG+TGG + Chr7:81621279-81621298 MsG0780040722.01.T01:intron 50.0%
! AGGTTTTTCCCTTCCCTTCC+CGG - Chr7:81620620-81620639 None:intergenic 50.0%
! CTTGGGTTGCCTTCTAGGAA+TGG - Chr7:81623215-81623234 None:intergenic 50.0%
!! AACCACTTTAGGGCTTGGGT+GGG - Chr7:81619339-81619358 None:intergenic 50.0%
!! ATTGCTCTCAAGGGCATTGG+AGG + Chr7:81622785-81622804 MsG0780040722.01.T01:CDS 50.0%
!! TAGGGTTGAGTGAGTTGGTG+AGG - Chr7:81620640-81620659 None:intergenic 50.0%
!! TTGCTCTCAAGGGCATTGGA+GGG + Chr7:81622786-81622805 MsG0780040722.01.T01:CDS 50.0%
CTCATCTCTCTGACCGGGAA+GGG + Chr7:81620604-81620623 MsG0780040722.01.T01:intron 55.0%
CTTGGTGGGGAGATTTGTGC+CGG - Chr7:81623366-81623385 None:intergenic 55.0%
GACAAGCACTAGCCAGATCC+TGG - Chr7:81623338-81623357 None:intergenic 55.0%
GGATCTGGCTAGTGCTTGTC+TGG + Chr7:81623338-81623357 MsG0780040722.01.T01:intron 55.0%
GTAATTGGTGGGATGGGTCG+TGG + Chr7:81619313-81619332 MsG0780040722.01.T01:intron 55.0%
GTTCACACAGGTCAGAGCCA+TGG + Chr7:81623024-81623043 MsG0780040722.01.T01:intron 55.0%
TCTCATCTCTCTGACCGGGA+AGG + Chr7:81620603-81620622 MsG0780040722.01.T01:intron 55.0%
!! GAACCACTTTAGGGCTTGGG+TGG - Chr7:81619340-81619359 None:intergenic 55.0%
CTCTCTGACCGGGAAGGGAA+GGG + Chr7:81620609-81620628 MsG0780040722.01.T01:intron 60.0%
GGCTAGTGCTTGTCTGGCAC+CGG + Chr7:81623344-81623363 MsG0780040722.01.T01:CDS 60.0%
TCTCTCTGACCGGGAAGGGA+AGG + Chr7:81620608-81620627 MsG0780040722.01.T01:intron 60.0%
GGCCCACCCAAGCCCTAAAG+TGG + Chr7:81619334-81619353 MsG0780040722.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 81619252 81623729 81619252 ID=MsG0780040722.01;Name=MsG0780040722.01
Chr7 mRNA 81619252 81623729 81619252 ID=MsG0780040722.01.T01;Parent=MsG0780040722.01;Name=MsG0780040722.01.T01;_AED=0.44;_eAED=0.64;_QI=0|0.16|0.23|1|0.66|0.69|13|0|260
Chr7 exon 81619252 81619263 81619252 ID=MsG0780040722.01.T01:exon:38120;Parent=MsG0780040722.01.T01
Chr7 exon 81620661 81620746 81620661 ID=MsG0780040722.01.T01:exon:38121;Parent=MsG0780040722.01.T01
Chr7 exon 81621575 81621689 81621575 ID=MsG0780040722.01.T01:exon:38122;Parent=MsG0780040722.01.T01
Chr7 exon 81622761 81622850 81622761 ID=MsG0780040722.01.T01:exon:38123;Parent=MsG0780040722.01.T01
Chr7 exon 81622935 81623033 81622935 ID=MsG0780040722.01.T01:exon:38124;Parent=MsG0780040722.01.T01
Chr7 exon 81623163 81623240 81623163 ID=MsG0780040722.01.T01:exon:38125;Parent=MsG0780040722.01.T01
Chr7 exon 81623339 81623437 81623339 ID=MsG0780040722.01.T01:exon:38126;Parent=MsG0780040722.01.T01
Chr7 exon 81623526 81623729 81623526 ID=MsG0780040722.01.T01:exon:38127;Parent=MsG0780040722.01.T01
Chr7 CDS 81619252 81619263 81619252 ID=MsG0780040722.01.T01:cds;Parent=MsG0780040722.01.T01
Chr7 CDS 81620661 81620746 81620661 ID=MsG0780040722.01.T01:cds;Parent=MsG0780040722.01.T01
Chr7 CDS 81621575 81621689 81621575 ID=MsG0780040722.01.T01:cds;Parent=MsG0780040722.01.T01
Chr7 CDS 81622761 81622850 81622761 ID=MsG0780040722.01.T01:cds;Parent=MsG0780040722.01.T01
Chr7 CDS 81622935 81623033 81622935 ID=MsG0780040722.01.T01:cds;Parent=MsG0780040722.01.T01
Chr7 CDS 81623163 81623240 81623163 ID=MsG0780040722.01.T01:cds;Parent=MsG0780040722.01.T01
Chr7 CDS 81623339 81623437 81623339 ID=MsG0780040722.01.T01:cds;Parent=MsG0780040722.01.T01
Chr7 CDS 81623526 81623729 81623526 ID=MsG0780040722.01.T01:cds;Parent=MsG0780040722.01.T01
Gene Sequence

>MsG0780040722.01.T01

ATGGATCACAAGATTCTCTCTTTCTCTTCAATGGCTTTCGCTTCTTTTCTCGGAAGAGTTCTCTTCGCCTCCGTTTTCATTCTCTCTGCTTACCAAGAATTTAATGACTATGGAGTTGATGGGGGACTTGCAGCAAAAGCAATCAGACCAAAGTTTGATGCCTTCTTACACAAAGTAGATTCACAAGTTGGCTTCAATCTTCCAGAAATTGATATAAAGTTTTTAGTTGCTGGGGTTATTGCTCTCAAGGGCATTGGAGGGATTCTTTTCATACTTGGCACTTCGTTCGGAGCTGTACTTTTGCTTTTGCACCAGTTGATCACTACTCCAATATTGTACGATTTCTATAACTACGACAATGAGGACAAAGAATATATTCAACTTTTCATCAAGTTCACACAGAATATGGCTCTCTTTGGGGCTTTGTTGTTTTTTATTGGGATGAAAAACTCCATTCCTAGAAGGCAACCCAAGAAGAAGGATCTGGCTAGTGCTTGTCTGGCACCGGCACAAATCTCCCCACCAAGTATTGTATTTGTAGGTGTAGCATCAGTCTCACATGGATTACACGTGATTTATATTCTGTTTTTTGAAATGTGGAGATTGCTGATTTCATTCATTCCTTCTAGCGAATTCGATATTAAAGGTCATAAAAGTGTGGCCGTCATTGAAGTTGCTGTTGTATTACATGTTCCCCGCTTTGATTTCTTTGGCCCTTTTCATCTGACTTCGTGTTTGTTCAGTATTGCAGGAGTTTGGCAAAATCAGAGTGAGCCACTGTGA
Protein sequence

>MsG0780040722.01.T01

MDHKILSFSSMAFASFLGRVLFASVFILSAYQEFNDYGVDGGLAAKAIRPKFDAFLHKVDSQVGFNLPEIDIKFLVAGVIALKGIGGILFILGTSFGAVLLLLHQLITTPILYDFYNYDNEDKEYIQLFIKFTQNMALFGALLFFIGMKNSIPRRQPKKKDLASACLAPAQISPPSIVFVGVASVSHGLHVIYILFFEMWRLLISFIPSSEFDIKGHKSVAVIEVAVVLHVPRFDFFGPFHLTSCLFSIAGVWQNQSEPL*