Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041005.01.T01 | KEH24043.1 | 99.153 | 118 | 1 | 0 | 1 | 118 | 1 | 118 | 4.34E-75 | 241 |
| MsG0780041005.01.T01 | KEH24043.1 | 55.303 | 132 | 53 | 2 | 76 | 201 | 169 | 300 | 2.29E-31 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041005.01.T01 | O04375 | 53.289 | 152 | 45 | 4 | 1 | 127 | 1 | 151 | 9.78E-44 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041005.01.T01 | A0A072U4I3 | 99.153 | 118 | 1 | 0 | 1 | 118 | 1 | 118 | 2.07e-75 | 241 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000854.01 | MsG0780041005.01 | 0.826245 | 3.015076e-54 | 2.812158e-51 |
| MsG0480022509.01 | MsG0780041005.01 | 0.802348 | 5.853705e-49 | 2.861003e-46 |
| MsG0280007011.01 | MsG0780041005.01 | 0.818773 | 1.645524e-52 | 1.243215e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041005.01.T01 | MTR_7g102900 | 99.153 | 118 | 1 | 0 | 1 | 118 | 1 | 118 | 5.25e-79 | 241 |
| MsG0780041005.01.T01 | MTR_7g102900 | 55.303 | 132 | 53 | 2 | 76 | 201 | 169 | 300 | 2.78e-35 | 127 |
| MsG0780041005.01.T01 | MTR_1g062950 | 62.585 | 147 | 32 | 4 | 1 | 127 | 1 | 144 | 2.43e-43 | 151 |
| MsG0780041005.01.T01 | MTR_1g062950 | 51.515 | 132 | 58 | 2 | 76 | 201 | 187 | 318 | 4.76e-31 | 118 |
| MsG0780041005.01.T01 | MTR_6g022720 | 68.235 | 85 | 26 | 1 | 117 | 200 | 250 | 334 | 2.03e-29 | 112 |
| MsG0780041005.01.T01 | MTR_6g022720 | 55.128 | 78 | 35 | 0 | 41 | 118 | 76 | 153 | 7.18e-24 | 97.8 |
| MsG0780041005.01.T01 | MTR_6g022720 | 68.235 | 85 | 26 | 1 | 117 | 200 | 250 | 334 | 5.37e-29 | 112 |
| MsG0780041005.01.T01 | MTR_6g022720 | 55.128 | 78 | 35 | 0 | 41 | 118 | 76 | 153 | 1.11e-23 | 98.2 |
| MsG0780041005.01.T01 | MTR_3g080070 | 75.000 | 68 | 17 | 0 | 134 | 201 | 284 | 351 | 1.08e-28 | 112 |
| MsG0780041005.01.T01 | MTR_3g080070 | 43.925 | 107 | 60 | 0 | 14 | 120 | 65 | 171 | 1.48e-22 | 94.7 |
| MsG0780041005.01.T01 | MTR_3g086010 | 73.611 | 72 | 18 | 1 | 129 | 200 | 270 | 340 | 4.32e-28 | 110 |
| MsG0780041005.01.T01 | MTR_3g086010 | 48.837 | 86 | 43 | 1 | 42 | 127 | 83 | 167 | 8.52e-20 | 87.0 |
| MsG0780041005.01.T01 | MTR_1g111570 | 63.529 | 85 | 30 | 1 | 117 | 200 | 232 | 316 | 8.28e-27 | 106 |
| MsG0780041005.01.T01 | MTR_1g111570 | 42.069 | 145 | 64 | 5 | 1 | 127 | 1 | 143 | 2.34e-24 | 99.8 |
| MsG0780041005.01.T01 | MTR_4g113020 | 70.312 | 64 | 18 | 1 | 137 | 200 | 262 | 324 | 8.13e-26 | 102 |
| MsG0780041005.01.T01 | MTR_4g113020 | 40.449 | 89 | 49 | 2 | 33 | 117 | 57 | 145 | 8.25e-14 | 69.3 |
| MsG0780041005.01.T01 | MTR_4g113020 | 70.312 | 64 | 18 | 1 | 137 | 200 | 262 | 324 | 1.15e-25 | 103 |
| MsG0780041005.01.T01 | MTR_4g113020 | 40.449 | 89 | 49 | 2 | 33 | 117 | 57 | 145 | 9.70e-14 | 69.3 |
| MsG0780041005.01.T01 | MTR_3g107980 | 55.294 | 85 | 37 | 1 | 117 | 200 | 240 | 324 | 6.24e-24 | 98.6 |
| MsG0780041005.01.T01 | MTR_3g107980 | 43.519 | 108 | 59 | 2 | 12 | 117 | 35 | 142 | 1.09e-18 | 83.6 |
| MsG0780041005.01.T01 | MTR_1g011460 | 67.164 | 67 | 21 | 1 | 134 | 200 | 252 | 317 | 3.18e-23 | 96.7 |
| MsG0780041005.01.T01 | MTR_1g011460 | 47.423 | 97 | 48 | 2 | 23 | 117 | 39 | 134 | 6.29e-18 | 81.6 |
| MsG0780041005.01.T01 | MTR_1g112940 | 63.077 | 65 | 24 | 0 | 136 | 200 | 210 | 274 | 8.73e-23 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041005.01.T01 | AT5G03470 | 53.289 | 152 | 45 | 4 | 1 | 127 | 1 | 151 | 9.97e-45 | 155 |
| MsG0780041005.01.T01 | AT5G03470 | 51.145 | 131 | 58 | 2 | 76 | 200 | 194 | 324 | 9.66e-32 | 120 |
| MsG0780041005.01.T01 | AT3G09880 | 56.643 | 143 | 37 | 2 | 1 | 118 | 1 | 143 | 2.60e-44 | 154 |
| MsG0780041005.01.T01 | AT3G09880 | 51.145 | 131 | 58 | 2 | 76 | 200 | 194 | 324 | 7.22e-31 | 118 |
| MsG0780041005.01.T01 | AT3G21650 | 77.941 | 68 | 15 | 0 | 134 | 201 | 289 | 356 | 2.27e-28 | 111 |
| MsG0780041005.01.T01 | AT3G21650 | 44.444 | 108 | 48 | 1 | 11 | 118 | 79 | 174 | 1.13e-22 | 95.1 |
| MsG0780041005.01.T01 | AT3G21650 | 77.941 | 68 | 15 | 0 | 134 | 201 | 289 | 356 | 2.27e-28 | 111 |
| MsG0780041005.01.T01 | AT3G21650 | 44.444 | 108 | 48 | 1 | 11 | 118 | 79 | 174 | 1.13e-22 | 95.1 |
| MsG0780041005.01.T01 | AT4G15415 | 65.116 | 86 | 29 | 1 | 117 | 201 | 250 | 335 | 2.83e-28 | 110 |
| MsG0780041005.01.T01 | AT4G15415 | 46.809 | 94 | 46 | 1 | 25 | 118 | 64 | 153 | 4.73e-22 | 93.2 |
| MsG0780041005.01.T01 | AT4G15415 | 65.116 | 86 | 29 | 1 | 117 | 201 | 250 | 335 | 3.52e-28 | 110 |
| MsG0780041005.01.T01 | AT4G15415 | 46.809 | 94 | 46 | 1 | 25 | 118 | 64 | 153 | 7.12e-22 | 92.8 |
| MsG0780041005.01.T01 | AT4G15415 | 65.116 | 86 | 29 | 1 | 117 | 201 | 250 | 335 | 3.52e-28 | 110 |
| MsG0780041005.01.T01 | AT4G15415 | 46.809 | 94 | 46 | 1 | 25 | 118 | 64 | 153 | 7.12e-22 | 92.8 |
| MsG0780041005.01.T01 | AT4G15415 | 65.116 | 86 | 29 | 1 | 117 | 201 | 250 | 335 | 3.52e-28 | 110 |
| MsG0780041005.01.T01 | AT4G15415 | 46.809 | 94 | 46 | 1 | 25 | 118 | 64 | 153 | 7.12e-22 | 92.8 |
| MsG0780041005.01.T01 | AT4G15415 | 65.116 | 86 | 29 | 1 | 117 | 201 | 250 | 335 | 3.52e-28 | 110 |
| MsG0780041005.01.T01 | AT4G15415 | 46.809 | 94 | 46 | 1 | 25 | 118 | 64 | 153 | 7.12e-22 | 92.8 |
| MsG0780041005.01.T01 | AT1G13460 | 63.529 | 85 | 30 | 1 | 117 | 200 | 241 | 325 | 2.72e-27 | 108 |
| MsG0780041005.01.T01 | AT1G13460 | 50.602 | 83 | 40 | 1 | 45 | 127 | 71 | 152 | 2.18e-21 | 91.7 |
| MsG0780041005.01.T01 | AT1G13460 | 63.529 | 85 | 30 | 1 | 117 | 200 | 241 | 325 | 2.72e-27 | 108 |
| MsG0780041005.01.T01 | AT1G13460 | 50.602 | 83 | 40 | 1 | 45 | 127 | 71 | 152 | 2.18e-21 | 91.7 |
| MsG0780041005.01.T01 | AT3G26020 | 73.846 | 65 | 17 | 0 | 136 | 200 | 282 | 346 | 2.58e-26 | 105 |
| MsG0780041005.01.T01 | AT3G26020 | 50.000 | 76 | 38 | 0 | 45 | 120 | 92 | 167 | 4.33e-20 | 87.8 |
| MsG0780041005.01.T01 | AT3G26020 | 73.846 | 65 | 17 | 0 | 136 | 200 | 282 | 346 | 2.58e-26 | 105 |
| MsG0780041005.01.T01 | AT3G26020 | 50.000 | 76 | 38 | 0 | 45 | 120 | 92 | 167 | 4.33e-20 | 87.8 |
| MsG0780041005.01.T01 | AT3G26020 | 73.846 | 65 | 17 | 0 | 136 | 200 | 282 | 346 | 2.58e-26 | 105 |
| MsG0780041005.01.T01 | AT3G26020 | 50.000 | 76 | 38 | 0 | 45 | 120 | 92 | 167 | 4.33e-20 | 87.8 |
| MsG0780041005.01.T01 | AT3G26020 | 73.846 | 65 | 17 | 0 | 136 | 200 | 282 | 346 | 2.58e-26 | 105 |
| MsG0780041005.01.T01 | AT3G26020 | 50.000 | 76 | 38 | 0 | 45 | 120 | 92 | 167 | 4.33e-20 | 87.8 |
| MsG0780041005.01.T01 | AT3G54930 | 65.672 | 67 | 23 | 0 | 134 | 200 | 267 | 333 | 1.10e-25 | 102 |
| MsG0780041005.01.T01 | AT3G54930 | 37.500 | 152 | 63 | 2 | 1 | 120 | 1 | 152 | 3.90e-20 | 87.4 |
| MsG0780041005.01.T01 | AT3G54930 | 71.667 | 60 | 17 | 0 | 141 | 200 | 274 | 333 | 1.89e-25 | 102 |
| MsG0780041005.01.T01 | AT3G54930 | 37.500 | 152 | 63 | 2 | 1 | 120 | 1 | 152 | 3.55e-20 | 88.2 |
| MsG0780041005.01.T01 | AT3G54930 | 71.667 | 60 | 17 | 0 | 141 | 200 | 274 | 333 | 1.89e-25 | 102 |
| MsG0780041005.01.T01 | AT3G54930 | 37.500 | 152 | 63 | 2 | 1 | 120 | 1 | 152 | 3.55e-20 | 88.2 |
| MsG0780041005.01.T01 | AT3G26030 | 76.271 | 59 | 14 | 0 | 142 | 200 | 255 | 313 | 7.10e-24 | 98.6 |
| MsG0780041005.01.T01 | AT3G26030 | 37.391 | 115 | 57 | 4 | 8 | 120 | 34 | 135 | 9.29e-15 | 72.4 |
| MsG0780041005.01.T01 | AT5G25510 | 57.647 | 85 | 35 | 1 | 117 | 200 | 235 | 319 | 3.31e-23 | 96.7 |
| MsG0780041005.01.T01 | AT5G25510 | 48.837 | 86 | 44 | 0 | 32 | 117 | 55 | 140 | 5.18e-17 | 79.0 |
| MsG0780041005.01.T01 | AT3G26020 | 50.000 | 76 | 38 | 0 | 45 | 120 | 92 | 167 | 3.10e-20 | 88.2 |
| MsG0780041005.01.T01 | AT3G26020 | 50.000 | 76 | 38 | 0 | 45 | 120 | 92 | 167 | 3.10e-20 | 88.2 |
| MsG0780041005.01.T01 | AT3G26020 | 50.000 | 76 | 38 | 0 | 45 | 120 | 92 | 167 | 3.10e-20 | 88.2 |
| MsG0780041005.01.T01 | AT3G26020 | 50.000 | 76 | 38 | 0 | 45 | 120 | 92 | 167 | 3.54e-20 | 88.2 |
Find 54 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGCTTAAATTGCTGTTT+TGG | 0.277152 | 7:+85466978 | MsG0780041005.01.T01:CDS |
| ATGGAGCTTCTTGAGATTCT+TGG | 0.283316 | 7:+85467156 | MsG0780041005.01.T01:CDS |
| ACATATTCGCGCGCTCTTCT+CGG | 0.294893 | 7:-85467015 | None:intergenic |
| ATTCTTGGGAGTATAATTAA+TGG | 0.310293 | 7:+85467171 | MsG0780041005.01.T01:CDS |
| TGAGAGACACAGTGGGATTA+TGG | 0.319910 | 7:+85467137 | MsG0780041005.01.T01:intron |
| TTGGTTGAATTTATTCAATC+TGG | 0.326325 | 7:+85466896 | MsG0780041005.01.T01:CDS |
| TCAAGAAGAGATGATCAAAA+TGG | 0.333712 | 7:+85466943 | MsG0780041005.01.T01:CDS |
| GAGACAAACGTTGATGGAAT+TGG | 0.337460 | 7:+85466877 | MsG0780041005.01.T01:CDS |
| TGGTACACAGCAACCGGTTT+AGG | 0.341959 | 7:-85467261 | None:intergenic |
| TCCGTCGGTTGAATCGGATT+TGG | 0.375570 | 7:-85466654 | None:intergenic |
| TGGAGCTTCTTGAGATTCTT+GGG | 0.376232 | 7:+85467157 | MsG0780041005.01.T01:CDS |
| TTCTTGGGAGTATAATTAAT+GGG | 0.388053 | 7:+85467172 | MsG0780041005.01.T01:CDS |
| TCCGATTCAACCGACGGATT+CGG | 0.392194 | 7:+85466659 | MsG0780041005.01.T01:CDS |
| GCCTTTGCATAAACCTAAAC+CGG | 0.398905 | 7:+85467248 | MsG0780041005.01.T01:CDS |
| AATCAAGAGACAAACGTTGA+TGG | 0.404294 | 7:+85466871 | MsG0780041005.01.T01:CDS |
| ACCGAATCCGTCGGTTGAAT+CGG | 0.409965 | 7:-85466660 | None:intergenic |
| TGCTGATGGTACACAGCAAC+CGG | 0.436247 | 7:-85467267 | None:intergenic |
| GGCAACAAATCTGAAGCTTC+CGG | 0.442065 | 7:-85466802 | None:intergenic |
| TTTCACCGATACGTTGAAAT+CGG | 0.442963 | 7:+85466835 | MsG0780041005.01.T01:CDS |
| TCCATTGTTCCGCGACGTAC+CGG | 0.443183 | 7:+85466754 | MsG0780041005.01.T01:CDS |
| AAATTCTGTCTCTCGGAAAC+CGG | 0.456022 | 7:-85466773 | None:intergenic |
| CATTTCACAGTTTGTTGAGA+AGG | 0.464722 | 7:+85467302 | MsG0780041005.01.T01:CDS |
| AGAGACAGAATTTGTTTCTC+CGG | 0.478981 | 7:+85466783 | MsG0780041005.01.T01:CDS |
| GTCGGTTGAATCGGATTTGG+AGG | 0.488231 | 7:-85466651 | None:intergenic |
| GAACACCACCGTTGATTCAT+CGG | 0.490276 | 7:+85466691 | MsG0780041005.01.T01:CDS |
| AAGAGATGATCAAAATGGTT+CGG | 0.507475 | 7:+85466948 | MsG0780041005.01.T01:CDS |
| AACTTATGCTCTTCCTTCAT+CGG | 0.511189 | 7:-85467204 | None:intergenic |
| GAATCAACGGTGGTGTTCGC+CGG | 0.512285 | 7:-85466686 | None:intergenic |
| TGGGTTTGCGTTGCCGATGA+AGG | 0.513362 | 7:+85467191 | MsG0780041005.01.T01:CDS |
| TCGATTGTTCCCGACGGTGG+TGG | 0.529201 | 7:-85466725 | None:intergenic |
| AACCGACGGATTCGGTCCAC+CGG | 0.542715 | 7:+85466667 | MsG0780041005.01.T01:CDS |
| TTCAAGAAATTAATGAAAGG+AGG | 0.548771 | 7:+85466617 | MsG0780041005.01.T01:CDS |
| TCGGTTGAATCGGATTTGGA+GGG | 0.549058 | 7:-85466650 | None:intergenic |
| ATCTGGTTCGAGTAAGATAA+CGG | 0.549511 | 7:+85466913 | MsG0780041005.01.T01:CDS |
| GTCGTCATACCACCACCGTC+GGG | 0.557075 | 7:+85466716 | MsG0780041005.01.T01:CDS |
| ACCGGTTTAGGTTTATGCAA+AGG | 0.566878 | 7:-85467249 | None:intergenic |
| GAGAAACAAATTCTGTCTCT+CGG | 0.568258 | 7:-85466780 | None:intergenic |
| ACCGGTACGTCGCGGAACAA+TGG | 0.570851 | 7:-85466755 | None:intergenic |
| CGCCGGTGGACCGAATCCGT+CGG | 0.576939 | 7:-85466669 | None:intergenic |
| TCAACGGTGGTGTTCGCCGG+TGG | 0.577690 | 7:-85466683 | None:intergenic |
| TCGAACCGATTTCAACGTAT+CGG | 0.577950 | 7:-85466840 | None:intergenic |
| TCCAAATCCGATTCAACCGA+CGG | 0.579773 | 7:+85466653 | MsG0780041005.01.T01:CDS |
| TGCAGTAAGACAACTGCTGA+TGG | 0.583311 | 7:-85467281 | None:intergenic |
| GACGACCGCCGATGAATCAA+CGG | 0.583706 | 7:-85466699 | None:intergenic |
| TCAAGAAATTAATGAAAGGA+GGG | 0.589158 | 7:+85466618 | MsG0780041005.01.T01:CDS |
| GCTTCGATTGTTCCCGACGG+TGG | 0.599372 | 7:-85466728 | None:intergenic |
| AGCGCTTCGATTGTTCCCGA+CGG | 0.609442 | 7:-85466731 | None:intergenic |
| GGTCGTCATACCACCACCGT+CGG | 0.618504 | 7:+85466715 | MsG0780041005.01.T01:CDS |
| ATGTTCAAGAAATTAATGAA+AGG | 0.640531 | 7:+85466614 | MsG0780041005.01.T01:CDS |
| TATCGGTGAAATCTAAAGTG+TGG | 0.656741 | 7:-85466823 | None:intergenic |
| TTGAGAAGGATTTAAGCTAG+CGG | 0.658860 | 7:+85467316 | MsG0780041005.01.T01:CDS |
| CACCACCGTTGATTCATCGG+CGG | 0.696492 | 7:+85466694 | MsG0780041005.01.T01:CDS |
| TCTCGGAAACCGGTACGTCG+CGG | 0.698158 | 7:-85466763 | None:intergenic |
| GACCGCCGATGAATCAACGG+TGG | 0.723161 | 7:-85466696 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATTAATAACATATTTTAT+CGG | + | Chr7:85467100-85467119 | MsG0780041005.01.T01:intron | 10.0% |
| !! | ATGTTCAAGAAATTAATGAA+AGG | + | Chr7:85466614-85466633 | MsG0780041005.01.T01:CDS | 20.0% |
| !! | ATTAATAGCCTTTCTAATAA+AGG | - | Chr7:85467088-85467107 | None:intergenic | 20.0% |
| !! | TTAATAGCCTTTCTAATAAA+GGG | - | Chr7:85467087-85467106 | None:intergenic | 20.0% |
| ! | TCAAGAAATTAATGAAAGGA+GGG | + | Chr7:85466618-85466637 | MsG0780041005.01.T01:CDS | 25.0% |
| ! | TCGTGTTTATGGAAAATTTA+TGG | + | Chr7:85467053-85467072 | MsG0780041005.01.T01:intron | 25.0% |
| ! | TTCAAGAAATTAATGAAAGG+AGG | + | Chr7:85466617-85466636 | MsG0780041005.01.T01:CDS | 25.0% |
| ! | TTGGTTGAATTTATTCAATC+TGG | + | Chr7:85466896-85466915 | MsG0780041005.01.T01:CDS | 25.0% |
| !! | ATTCTTGGGAGTATAATTAA+TGG | + | Chr7:85467171-85467190 | MsG0780041005.01.T01:CDS | 25.0% |
| !! | TTCTTGGGAGTATAATTAAT+GGG | + | Chr7:85467172-85467191 | MsG0780041005.01.T01:CDS | 25.0% |
| AAGAGATGATCAAAATGGTT+CGG | + | Chr7:85466948-85466967 | MsG0780041005.01.T01:CDS | 30.0% | |
| TCAAGAAGAGATGATCAAAA+TGG | + | Chr7:85466943-85466962 | MsG0780041005.01.T01:CDS | 30.0% | |
| TCATAGACCCTTTATTAGAA+AGG | + | Chr7:85467077-85467096 | MsG0780041005.01.T01:intron | 30.0% | |
| !!! | TTGTGCTTAAATTGCTGTTT+TGG | + | Chr7:85466978-85466997 | MsG0780041005.01.T01:CDS | 30.0% |
| AACTTATGCTCTTCCTTCAT+CGG | - | Chr7:85467207-85467226 | None:intergenic | 35.0% | |
| AATCAAGAGACAAACGTTGA+TGG | + | Chr7:85466871-85466890 | MsG0780041005.01.T01:CDS | 35.0% | |
| ACGATATTGCATCGTGTTTA+TGG | + | Chr7:85467042-85467061 | MsG0780041005.01.T01:intron | 35.0% | |
| GAGAAACAAATTCTGTCTCT+CGG | - | Chr7:85466783-85466802 | None:intergenic | 35.0% | |
| TTTCACCGATACGTTGAAAT+CGG | + | Chr7:85466835-85466854 | MsG0780041005.01.T01:CDS | 35.0% | |
| ! | AGAGACAGAATTTGTTTCTC+CGG | + | Chr7:85466783-85466802 | MsG0780041005.01.T01:CDS | 35.0% |
| ! | ATCTGGTTCGAGTAAGATAA+CGG | + | Chr7:85466913-85466932 | MsG0780041005.01.T01:CDS | 35.0% |
| ! | TATCGGTGAAATCTAAAGTG+TGG | - | Chr7:85466826-85466845 | None:intergenic | 35.0% |
| !! | CATTTCACAGTTTGTTGAGA+AGG | + | Chr7:85467302-85467321 | MsG0780041005.01.T01:CDS | 35.0% |
| AAATTCTGTCTCTCGGAAAC+CGG | - | Chr7:85466776-85466795 | None:intergenic | 40.0% | |
| ATGGAGCTTCTTGAGATTCT+TGG | + | Chr7:85467156-85467175 | MsG0780041005.01.T01:CDS | 40.0% | |
| GCCTTTGCATAAACCTAAAC+CGG | + | Chr7:85467248-85467267 | MsG0780041005.01.T01:CDS | 40.0% | |
| TGGAGCTTCTTGAGATTCTT+GGG | + | Chr7:85467157-85467176 | MsG0780041005.01.T01:CDS | 40.0% | |
| ! | ACCGGTTTAGGTTTATGCAA+AGG | - | Chr7:85467252-85467271 | None:intergenic | 40.0% |
| ! | GAGACAAACGTTGATGGAAT+TGG | + | Chr7:85466877-85466896 | MsG0780041005.01.T01:CDS | 40.0% |
| ! | TCGAACCGATTTCAACGTAT+CGG | - | Chr7:85466843-85466862 | None:intergenic | 40.0% |
| !!! | TGCTGTTTTGGCTTGATTTG+AGG | + | Chr7:85466990-85467009 | MsG0780041005.01.T01:CDS | 40.0% |
| ATGAGACTGAGAGACACAGT+GGG | + | Chr7:85467130-85467149 | MsG0780041005.01.T01:intron | 45.0% | |
| TATGAGACTGAGAGACACAG+TGG | + | Chr7:85467129-85467148 | MsG0780041005.01.T01:intron | 45.0% | |
| TCCAAATCCGATTCAACCGA+CGG | + | Chr7:85466653-85466672 | MsG0780041005.01.T01:CDS | 45.0% | |
| TCGGTTGAATCGGATTTGGA+GGG | - | Chr7:85466653-85466672 | None:intergenic | 45.0% | |
| TGAGAGACACAGTGGGATTA+TGG | + | Chr7:85467137-85467156 | MsG0780041005.01.T01:intron | 45.0% | |
| TGCAGTAAGACAACTGCTGA+TGG | - | Chr7:85467284-85467303 | None:intergenic | 45.0% | |
| ! | GGCAACAAATCTGAAGCTTC+CGG | - | Chr7:85466805-85466824 | None:intergenic | 45.0% |
| !! | GAACACCACCGTTGATTCAT+CGG | + | Chr7:85466691-85466710 | MsG0780041005.01.T01:CDS | 45.0% |
| ACATATTCGCGCGCTCTTCT+CGG | - | Chr7:85467018-85467037 | None:intergenic | 50.0% | |
| GTCGGTTGAATCGGATTTGG+AGG | - | Chr7:85466654-85466673 | None:intergenic | 50.0% | |
| TGCTGATGGTACACAGCAAC+CGG | - | Chr7:85467270-85467289 | None:intergenic | 50.0% | |
| ! | ACCGAATCCGTCGGTTGAAT+CGG | - | Chr7:85466663-85466682 | None:intergenic | 50.0% |
| ! | TCCGATTCAACCGACGGATT+CGG | + | Chr7:85466659-85466678 | MsG0780041005.01.T01:CDS | 50.0% |
| ! | TCCGTCGGTTGAATCGGATT+TGG | - | Chr7:85466657-85466676 | None:intergenic | 50.0% |
| ! | TGGTACACAGCAACCGGTTT+AGG | - | Chr7:85467264-85467283 | None:intergenic | 50.0% |
| AGCGCTTCGATTGTTCCCGA+CGG | - | Chr7:85466734-85466753 | None:intergenic | 55.0% | |
| GAATCAACGGTGGTGTTCGC+CGG | - | Chr7:85466689-85466708 | None:intergenic | 55.0% | |
| GACGACCGCCGATGAATCAA+CGG | - | Chr7:85466702-85466721 | None:intergenic | 55.0% | |
| TCCATTGTTCCGCGACGTAC+CGG | + | Chr7:85466754-85466773 | MsG0780041005.01.T01:CDS | 55.0% | |
| TGGGTTTGCGTTGCCGATGA+AGG | + | Chr7:85467191-85467210 | MsG0780041005.01.T01:CDS | 55.0% | |
| !! | CACCACCGTTGATTCATCGG+CGG | + | Chr7:85466694-85466713 | MsG0780041005.01.T01:CDS | 55.0% |
| ACCGGTACGTCGCGGAACAA+TGG | - | Chr7:85466758-85466777 | None:intergenic | 60.0% | |
| GACCGCCGATGAATCAACGG+TGG | - | Chr7:85466699-85466718 | None:intergenic | 60.0% | |
| GCTTCGATTGTTCCCGACGG+TGG | - | Chr7:85466731-85466750 | None:intergenic | 60.0% | |
| GGTCGTCATACCACCACCGT+CGG | + | Chr7:85466715-85466734 | MsG0780041005.01.T01:CDS | 60.0% | |
| GTCGTCATACCACCACCGTC+GGG | + | Chr7:85466716-85466735 | MsG0780041005.01.T01:CDS | 60.0% | |
| TCGATTGTTCCCGACGGTGG+TGG | - | Chr7:85466728-85466747 | None:intergenic | 60.0% | |
| TCTCGGAAACCGGTACGTCG+CGG | - | Chr7:85466766-85466785 | None:intergenic | 60.0% | |
| ! | AACCGACGGATTCGGTCCAC+CGG | + | Chr7:85466667-85466686 | MsG0780041005.01.T01:CDS | 60.0% |
| TCAACGGTGGTGTTCGCCGG+TGG | - | Chr7:85466686-85466705 | None:intergenic | 65.0% | |
| CGCCGGTGGACCGAATCCGT+CGG | - | Chr7:85466672-85466691 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 85466614 | 85467335 | 85466614 | ID=MsG0780041005.01;Name=MsG0780041005.01 |
| Chr7 | mRNA | 85466614 | 85467335 | 85466614 | ID=MsG0780041005.01.T01;Parent=MsG0780041005.01;Name=MsG0780041005.01.T01;_AED=0.50;_eAED=0.53;_QI=0|0|0|1|1|1|2|0|202 |
| Chr7 | exon | 85466614 | 85467035 | 85466614 | ID=MsG0780041005.01.T01:exon:19258;Parent=MsG0780041005.01.T01 |
| Chr7 | exon | 85467149 | 85467335 | 85467149 | ID=MsG0780041005.01.T01:exon:19259;Parent=MsG0780041005.01.T01 |
| Chr7 | CDS | 85466614 | 85467035 | 85466614 | ID=MsG0780041005.01.T01:cds;Parent=MsG0780041005.01.T01 |
| Chr7 | CDS | 85467149 | 85467335 | 85467149 | ID=MsG0780041005.01.T01:cds;Parent=MsG0780041005.01.T01 |
| Gene Sequence |
| Protein sequence |
