AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000854.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000854.01.T01 MTR_1g007180 97.357 454 12 0 10 463 4 457 0.0 916
MsG0180000854.01.T01 MTR_1g007240 87.225 454 58 0 10 463 4 457 0.0 827
MsG0180000854.01.T01 MTR_2g031750 80.879 455 87 0 9 463 3 457 0.0 783
MsG0180000854.01.T01 MTR_3g110420 67.742 465 148 1 1 463 7 471 0.0 674
MsG0180000854.01.T01 MTR_2g031750 80.829 386 74 0 78 463 5 390 0.0 665
MsG0180000854.01.T01 MTR_1g007180 97.360 303 8 0 161 463 71 373 0.0 610
MsG0180000854.01.T01 MTR_1g007270 57.837 453 182 4 12 462 27 472 0.0 555
MsG0180000854.01.T01 MTR_3g110420 68.502 327 101 1 1 325 7 333 1.70e-168 478
MsG0180000854.01.T01 MTR_3g110430 53.187 455 207 3 10 462 55 505 1.25e-166 479
MsG0180000854.01.T01 MTR_3g110660 48.253 458 229 5 12 463 27 482 3.60e-165 474
MsG0180000854.01.T01 MTR_1g007380 48.684 456 230 3 12 463 17 472 1.86e-164 473
MsG0180000854.01.T01 MTR_1g105980 47.323 467 238 4 1 459 1 467 3.47e-159 459
MsG0180000854.01.T01 MTR_8g094290 47.473 455 232 4 8 459 21 471 4.33e-159 459
MsG0180000854.01.T01 MTR_1g106000 48.352 455 222 4 18 459 15 469 8.37e-156 450
MsG0180000854.01.T01 MTR_1g105995 47.577 454 234 3 10 459 13 466 1.72e-154 447
MsG0180000854.01.T01 MTR_1g105990 48.315 445 223 4 9 446 12 456 1.00e-152 442
MsG0180000854.01.T01 MTR_3g088455 47.788 452 228 4 12 459 28 475 2.51e-152 442
MsG0180000854.01.T01 MTR_1g029750 47.566 452 232 4 12 459 29 479 6.21e-152 441
MsG0180000854.01.T01 MTR_3g088475 47.682 453 228 5 12 459 28 476 1.47e-150 437
MsG0180000854.01.T01 MTR_3g096830 49.220 449 223 3 12 459 20 464 1.52e-150 437
MsG0180000854.01.T01 MTR_3g096800 45.575 452 239 4 12 460 27 474 8.43e-148 430
MsG0180000854.01.T01 MTR_3g096840 45.575 452 239 4 12 460 33 480 1.81e-146 427
MsG0180000854.01.T01 MTR_4g073520 44.737 456 244 3 12 459 53 508 1.51e-145 426
MsG0180000854.01.T01 MTR_4g073520 44.737 456 244 3 12 459 53 508 2.41e-145 425
MsG0180000854.01.T01 MTR_3g461440 41.387 447 255 4 12 454 17 460 5.67e-131 387
MsG0180000854.01.T01 MTR_3g461470 41.950 441 250 3 12 449 17 454 7.44e-131 386
MsG0180000854.01.T01 MTR_5g096840 42.013 457 252 6 2 453 18 466 3.62e-126 375
MsG0180000854.01.T01 MTR_3g061390 40.991 444 252 4 12 448 17 457 2.02e-125 372
MsG0180000854.01.T01 MTR_3g110660 53.628 317 142 3 12 324 27 342 3.42e-121 359
MsG0180000854.01.T01 MTR_3g461430 39.909 441 253 4 15 449 27 461 5.55e-121 363
MsG0180000854.01.T01 MTR_3g461480 41.629 442 251 4 12 449 21 459 1.50e-120 360
MsG0180000854.01.T01 MTR_3g088465 45.278 360 190 4 12 367 28 384 3.53e-110 332
MsG0180000854.01.T01 MTR_5g096850 37.832 452 274 4 2 449 9 457 1.53e-109 332
MsG0180000854.01.T01 MTR_3g461440 38.509 322 191 4 137 454 5 323 2.12e-85 265
MsG0180000854.01.T01 MTR_5g017200 46.640 253 123 4 10 262 24 264 9.94e-71 225
MsG0180000854.01.T01 MTR_1g007190 46.606 221 80 5 28 248 20 202 1.28e-56 186
MsG0180000854.01.T01 MTR_6g022790 25.877 456 284 12 5 445 20 436 4.36e-39 147
MsG0180000854.01.T01 MTR_4g103890 25.170 441 285 11 9 443 1 402 9.71e-37 140
MsG0180000854.01.T01 MTR_2g101920 26.005 423 255 10 17 424 46 425 3.97e-35 136
MsG0180000854.01.T01 MTR_8g080120 24.835 455 291 14 17 460 22 436 1.14e-33 132
MsG0180000854.01.T01 MTR_3g005740 27.171 449 292 11 17 460 51 469 6.77e-33 130
MsG0180000854.01.T01 MTR_1g070470 24.123 456 306 11 11 459 15 437 1.40e-32 129
MsG0180000854.01.T01 MTR_7g038910 28.221 326 205 9 17 334 29 333 4.59e-29 117
MsG0180000854.01.T01 MTR_5g054730 25.995 427 274 13 5 424 12 403 6.37e-29 118
MsG0180000854.01.T01 MTR_7g038910 28.221 326 205 9 17 334 29 333 9.08e-29 117
MsG0180000854.01.T01 MTR_7g038910 28.221 326 205 9 17 334 29 333 1.41e-28 117
MsG0180000854.01.T01 MTR_2g096830 24.802 379 245 10 10 382 6 350 2.95e-28 116
MsG0180000854.01.T01 MTR_2g096830 25.982 331 220 8 10 334 6 317 3.29e-28 114
MsG0180000854.01.T01 MTR_3g085820 27.160 324 211 9 17 334 32 336 4.51e-28 115
MsG0180000854.01.T01 MTR_6g022780 25.000 444 275 11 9 437 1 401 1.77e-27 114
MsG0180000854.01.T01 MTR_1g093030 24.890 454 296 10 14 459 20 436 3.48e-27 113
MsG0180000854.01.T01 MTR_6g023065 25.915 328 210 7 17 334 49 353 4.77e-27 113
MsG0180000854.01.T01 MTR_6g023075 24.289 387 240 10 10 382 3 350 1.86e-26 111
MsG0180000854.01.T01 MTR_1g093020 25.416 421 272 11 10 424 17 401 2.56e-26 110
MsG0180000854.01.T01 MTR_1g093020 25.416 421 272 11 10 424 17 401 4.85e-26 110
MsG0180000854.01.T01 MTR_0531s0020 25.231 325 220 7 16 335 47 353 7.26e-26 108
MsG0180000854.01.T01 MTR_8g099320 23.110 463 312 13 10 459 16 447 6.26e-22 98.6
MsG0180000854.01.T01 MTR_4g075750 24.161 447 303 11 18 452 70 492 2.06e-21 97.1
MsG0180000854.01.T01 MTR_4g055610 24.074 432 267 15 10 417 28 422 5.57e-21 95.5
MsG0180000854.01.T01 MTR_3g115090 22.777 461 294 16 10 446 73 495 1.96e-18 88.2
MsG0180000854.01.T01 MTR_5g081630 21.905 420 284 11 46 460 1 381 2.06e-13 72.0
MsG0180000854.01.T01 MTR_5g023260 23.111 450 293 15 18 449 107 521 2.10e-13 72.8
MsG0180000854.01.T01 MTR_5g023240 23.144 458 306 15 19 462 87 512 9.90e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000854.01.T01 AT1G10010 53.437 451 207 2 12 459 21 471 7.19e-178 507
MsG0180000854.01.T01 AT1G10010 53.437 451 207 2 12 459 22 472 8.30e-178 506
MsG0180000854.01.T01 AT1G58360 52.550 451 211 2 12 459 30 480 4.01e-177 505
MsG0180000854.01.T01 AT5G49630 50.552 453 219 4 12 459 26 478 2.63e-166 478
MsG0180000854.01.T01 AT1G77380 48.780 451 227 3 12 459 23 472 2.89e-158 457
MsG0180000854.01.T01 AT1G44100 45.833 456 239 3 12 459 21 476 3.80e-150 436
MsG0180000854.01.T01 AT5G63850 45.575 452 241 3 12 459 12 462 4.02e-150 436
MsG0180000854.01.T01 AT5G09220 44.469 452 246 3 12 459 39 489 5.37e-149 434
MsG0180000854.01.T01 AT5G23810 45.070 426 223 5 11 428 18 440 1.11e-123 368
MsG0180000854.01.T01 AT5G23810 46.667 330 168 4 11 335 18 344 5.09e-97 296
MsG0180000854.01.T01 AT5G23810 46.058 241 124 3 11 248 18 255 8.98e-66 213
MsG0180000854.01.T01 AT5G23810 50.000 194 94 2 11 201 18 211 9.38e-58 190
MsG0180000854.01.T01 AT5G23810 50.000 194 94 2 11 201 18 211 9.38e-58 190
MsG0180000854.01.T01 AT5G40780 27.918 437 266 13 17 445 32 427 9.94e-38 143
MsG0180000854.01.T01 AT1G48640 26.984 441 265 13 17 445 39 434 4.36e-36 139
MsG0180000854.01.T01 AT5G40780 28.095 420 253 13 34 445 1 379 2.18e-34 133
MsG0180000854.01.T01 AT5G40780 28.095 420 253 13 34 445 1 379 2.18e-34 133
MsG0180000854.01.T01 AT1G24400 26.593 455 283 11 17 460 27 441 3.24e-34 133
MsG0180000854.01.T01 AT1G71680 27.455 448 289 10 17 460 33 448 2.68e-29 119
MsG0180000854.01.T01 AT3G01760 23.884 448 297 11 17 455 30 442 5.29e-29 119
MsG0180000854.01.T01 AT1G67640 25.110 454 291 13 17 460 27 441 1.16e-28 117
MsG0180000854.01.T01 AT1G71680 30.124 322 205 8 17 334 33 338 2.41e-28 115
MsG0180000854.01.T01 AT1G61270 22.698 467 313 13 3 457 12 442 8.53e-28 115
MsG0180000854.01.T01 AT1G25530 24.289 457 305 12 10 460 19 440 1.91e-25 108
MsG0180000854.01.T01 AT5G41800 22.553 470 313 12 8 460 12 447 2.91e-20 93.6
MsG0180000854.01.T01 AT1G08230 24.516 465 287 15 18 460 27 449 4.41e-20 92.8
MsG0180000854.01.T01 AT3G55740 22.803 421 279 11 46 460 1 381 4.23e-18 86.3
MsG0180000854.01.T01 AT3G55740 22.803 421 279 11 46 460 1 381 4.23e-18 86.3
MsG0180000854.01.T01 AT3G55740 22.803 421 279 11 46 460 57 437 4.62e-18 86.7
MsG0180000854.01.T01 AT2G39890 22.381 420 282 14 46 460 60 440 7.71e-15 77.0
MsG0180000854.01.T01 AT2G39890 22.381 420 282 14 46 460 60 440 7.71e-15 77.0
MsG0180000854.01.T01 AT2G39890 22.381 420 282 14 46 460 1 381 8.76e-15 76.3
MsG0180000854.01.T01 AT1G08230 27.103 321 193 12 154 460 37 330 3.50e-14 73.9
MsG0180000854.01.T01 AT1G08230 27.103 321 193 12 154 460 37 330 3.50e-14 73.9
MsG0180000854.01.T01 AT1G08230 27.103 321 193 12 154 460 37 330 3.50e-14 73.9
MsG0180000854.01.T01 AT1G08230 27.103 321 193 12 154 460 56 349 5.46e-14 73.6

Find 114 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCATATATTTATAAAA+AGG 0.186060 1:+12129630 MsG0180000854.01.T01:three_prime_UTR
TTTATAAATATATGAGAATA+AGG 0.189743 1:-12129626 None:intergenic
TGAACTTGTTTAGGTTAATT+TGG 0.199749 1:+12129231 MsG0180000854.01.T01:CDS
CTGTTGGGAGCGATTGGATT+TGG 0.205722 1:+12129323 MsG0180000854.01.T01:CDS
TCTGAGTAAGCCGGTTTATC+TGG 0.228885 1:-12126042 None:intergenic
AATCCCTACATGATCGGTTT+TGG 0.237586 1:+12128210 MsG0180000854.01.T01:CDS
CAATCAATTTGAACTTGTTT+AGG 0.255382 1:+12129222 MsG0180000854.01.T01:CDS
TGCCTTGGCTATGCTGCTTT+TGG 0.276773 1:+12128891 MsG0180000854.01.T01:CDS
AGCATAACCGGAACACAAAT+AGG 0.277840 1:+12128591 MsG0180000854.01.T01:CDS
CCACATGATTGGAGCATATC+AGG 0.303203 1:+12128995 MsG0180000854.01.T01:CDS
TGAGCAATATGCATTTGTAT+AGG 0.308548 1:-12129365 None:intergenic
TCTTTGTATGGTTGTCTCAT+TGG 0.316701 1:+12129442 MsG0180000854.01.T01:CDS
TTCCGGCCCTATTTGTGTTC+CGG 0.324687 1:-12128598 None:intergenic
ATGAAAAGGGCCAACGTGAT+AGG 0.325683 1:+12128831 MsG0180000854.01.T01:CDS
TGTTGGGAGCGATTGGATTT+GGG 0.348025 1:+12129324 MsG0180000854.01.T01:CDS
GAGCAATATGCATTTGTATA+GGG 0.353394 1:-12129364 None:intergenic
AAGGTACATACCAGTTCTTT+TGG 0.354167 1:-12126152 None:intergenic
CAGGGGTGTTGGCTCTAGCA+TGG 0.361926 1:+12127156 MsG0180000854.01.T01:CDS
TACTGTTATTTACGACATAA+TGG 0.375376 1:+12128692 MsG0180000854.01.T01:CDS
TTCTCTGCAGCAGTTAGTTC+CGG 0.376633 1:-12128615 None:intergenic
TTATAAATATATGAGAATAA+GGG 0.384308 1:-12129625 None:intergenic
CCATGTCAGTTTGTGAAAGT+TGG 0.389481 1:-12128262 None:intergenic
CCAAGGGCTACTATCCAATA+AGG 0.391272 1:-12128954 None:intergenic
TGTAGTAGGGGCAGGGGTGT+TGG 0.391643 1:+12127145 MsG0180000854.01.T01:CDS
TGTCTTACTGTCCTTATCTC+AGG 0.412282 1:+12128342 MsG0180000854.01.T01:CDS
GTCTTGTAGCTGATTGCTAT+AGG 0.413676 1:+12127255 MsG0180000854.01.T01:CDS
CAATCAATTTCTAGCTCTGT+TGG 0.414936 1:+12129307 MsG0180000854.01.T01:CDS
GGGGCATCTACCAGCATAAC+CGG 0.419402 1:+12128579 MsG0180000854.01.T01:CDS
TACACTCATGATGATATAGA+TGG 0.421345 1:-12125970 None:intergenic
CTGAGTAAGCCGGTTTATCT+GGG 0.427376 1:-12126041 None:intergenic
ATTGCCGCTATCACCTCGTT+TGG 0.429141 1:+12128294 MsG0180000854.01.T01:CDS
ATAGTATATATGTCGAGCTT+AGG 0.431582 1:+12129583 MsG0180000854.01.T01:three_prime_UTR
CATGTCAGTTTGTGAAAGTT+GGG 0.432632 1:-12128261 None:intergenic
TGAAAAGGGCCAACGTGATA+GGG 0.434153 1:+12128832 MsG0180000854.01.T01:CDS
CAAGCTGTCAAGAGCTACTT+AGG 0.436812 1:+12127320 MsG0180000854.01.T01:CDS
AGGGGTGTTGGCTCTAGCAT+GGG 0.441108 1:+12127157 MsG0180000854.01.T01:CDS
CAGAAAATAAACAAATGAAA+AGG 0.441906 1:+12128817 MsG0180000854.01.T01:CDS
AATAACTACCCCAGATAAAC+CGG 0.445044 1:+12126032 MsG0180000854.01.T01:five_prime_UTR
CATATCATAACAGTTGTAGT+AGG 0.450490 1:+12127131 MsG0180000854.01.T01:CDS
AATCAATTTCTAGCTCTGTT+GGG 0.451943 1:+12129308 MsG0180000854.01.T01:CDS
TACCAGCTATCCATCCTAGT+TGG 0.452399 1:-12127187 None:intergenic
GTTGTTTGCATCCATAGAAA+AGG 0.452898 1:+12128159 MsG0180000854.01.T01:CDS
GCATAACCGGAACACAAATA+GGG 0.453636 1:+12128592 MsG0180000854.01.T01:CDS
GGTTATGTATTCATTGCAGT+TGG 0.455037 1:+12128315 MsG0180000854.01.T01:CDS
TGCATAGTAATCCACATGAT+TGG 0.455742 1:+12128984 MsG0180000854.01.T01:CDS
CTAGCTCTGTTGGGAGCGAT+TGG 0.463495 1:+12129317 MsG0180000854.01.T01:CDS
TACAAAGACAATTCAAAAGT+TGG 0.463664 1:-12129427 None:intergenic
CTAGGATGGATAGCTGGTAT+AGG 0.464604 1:+12127191 MsG0180000854.01.T01:CDS
GTGGCGTGTTTGCACTTCAA+TGG 0.465802 1:+12128641 MsG0180000854.01.T01:CDS
TTCCTTTGTCACTTTATCCA+AGG 0.468551 1:+12129670 MsG0180000854.01.T01:three_prime_UTR
GATGGTAAAGCCAAAAGAAC+TGG 0.469877 1:+12126142 MsG0180000854.01.T01:CDS
TTCCTACTATGTAGTTGCCT+TGG 0.474242 1:+12128876 MsG0180000854.01.T01:CDS
GTTGGCTCTAGCATGGGCCA+TGG 0.482757 1:+12127163 MsG0180000854.01.T01:CDS
AGAAAATAAACAAATGAAAA+GGG 0.483828 1:+12128818 MsG0180000854.01.T01:CDS
TATTTGTGTTCCGGTTATGC+TGG 0.485037 1:-12128589 None:intergenic
TATTACACAAACTCTAATCA+TGG 0.488415 1:+12126108 MsG0180000854.01.T01:CDS
ACCAGCTATCCATCCTAGTT+GGG 0.489518 1:-12127186 None:intergenic
ACACGTTAAATGAATAGTCT+TGG 0.489661 1:-12129190 None:intergenic
TTTGGCTAAGAGCAGGAAAA+GGG 0.492627 1:+12128559 MsG0180000854.01.T01:intron
ATAACAGTTGTAGTAGGGGC+AGG 0.494302 1:+12127137 MsG0180000854.01.T01:CDS
TGGCGTGTTTGCACTTCAAT+GGG 0.506484 1:+12128642 MsG0180000854.01.T01:CDS
TGGCATTGCCATGGCAAGAA+TGG 0.508311 1:-12129279 None:intergenic
ATAGGGAAGAAGACAACTAA+TGG 0.514205 1:-12129347 None:intergenic
GGAACGATGCAAGTGATTTG+TGG 0.514681 1:+12127796 MsG0180000854.01.T01:CDS
GACTATTCATTTAACGTGTG+TGG 0.515313 1:+12129194 MsG0180000854.01.T01:CDS
TCTTATAATCCCTACATGAT+CGG 0.515618 1:+12128204 MsG0180000854.01.T01:CDS
ATATCATAACAGTTGTAGTA+GGG 0.519670 1:+12127132 MsG0180000854.01.T01:CDS
AGCCAAGGCAACTACATAGT+AGG 0.529056 1:-12128878 None:intergenic
ATCCCAAAACCGATCATGTA+GGG 0.529885 1:-12128213 None:intergenic
CCTTATTGGATAGTAGCCCT+TGG 0.533842 1:+12128954 MsG0180000854.01.T01:CDS
AGATAACTAAATGATATAAG+TGG 0.534402 1:+12126062 MsG0180000854.01.T01:five_prime_UTR
GCATGGGCCATGGCCCAACT+AGG 0.536744 1:+12127173 MsG0180000854.01.T01:CDS
AATCCTAGCAAATAAAACCT+TGG 0.540549 1:-12129687 None:intergenic
GGGCCATGGCCCAACTAGGA+TGG 0.542624 1:+12127177 MsG0180000854.01.T01:CDS
CCAACTTTCACAAACTGACA+TGG 0.543853 1:+12128262 MsG0180000854.01.T01:CDS
AACAGTTGTAGTAGGGGCAG+GGG 0.543889 1:+12127139 MsG0180000854.01.T01:CDS
ATTTAGTTATCTGAGTAAGC+CGG 0.551482 1:-12126051 None:intergenic
TATCCATCCTAGTTGGGCCA+TGG 0.551644 1:-12127180 None:intergenic
AAACGAGGTGATAGCGGCAA+TGG 0.553749 1:-12128292 None:intergenic
GCCCAACTAGGATGGATAGC+TGG 0.559262 1:+12127185 MsG0180000854.01.T01:CDS
AGGTTTCCAGACCCAATCAC+TGG 0.561683 1:+12127275 MsG0180000854.01.T01:CDS
ACTTGTTTAGGTTAATTTGG+AGG 0.564036 1:+12129234 MsG0180000854.01.T01:CDS
AACCGGAACACAAATAGGGC+CGG 0.569882 1:+12128596 MsG0180000854.01.T01:CDS
TAACAGTTGTAGTAGGGGCA+GGG 0.570383 1:+12127138 MsG0180000854.01.T01:CDS
ACTGTAAGTGAAAATAGAGA+TGG 0.570667 1:-12127234 None:intergenic
CACCAAAAGCAGCATAGCCA+AGG 0.570972 1:-12128893 None:intergenic
TCAACAAACTACCTGAGATA+AGG 0.571296 1:-12128353 None:intergenic
TATCCCAAAACCGATCATGT+AGG 0.575682 1:-12128214 None:intergenic
GATTTCTTTAGAGATAGAGT+TGG 0.578946 1:+12129733 MsG0180000854.01.T01:three_prime_UTR
TTACTATGCATACTTCTCCA+AGG 0.582950 1:-12128971 None:intergenic
TACTATGCATACTTCTCCAA+GGG 0.589792 1:-12128970 None:intergenic
GAAAAGGGCCAACGTGATAG+GGG 0.592889 1:+12128833 MsG0180000854.01.T01:CDS
AAGTTAGCTGGGATAACAGT+GGG 0.598087 1:+12127835 MsG0180000854.01.T01:CDS
CCTGATATGCTCCAATCATG+TGG 0.605077 1:-12128995 None:intergenic
AACCTTGGATAAAGTGACAA+AGG 0.605476 1:-12129672 None:intergenic
CTCATGATGATATAGATGGA+TGG 0.611310 1:-12125966 None:intergenic
GCAATATTGCAGGGAATGTG+TGG 0.613247 1:+12127096 MsG0180000854.01.T01:intron
TACCCGTGTTATCATTGAGG+TGG 0.616935 1:+12129396 MsG0180000854.01.T01:CDS
ACTAGCAACCATTCTTGCCA+TGG 0.618912 1:+12129271 MsG0180000854.01.T01:CDS
ACACCACCTCAATGATAACA+CGG 0.622743 1:-12129399 None:intergenic
TAACTGCTGCAGAGAAAGTG+TGG 0.629057 1:+12128622 MsG0180000854.01.T01:CDS
GCATACCCGTGTTATCATTG+AGG 0.631382 1:+12129393 MsG0180000854.01.T01:CDS
ATCATGGAACAAGATGATGA+TGG 0.632907 1:+12126124 MsG0180000854.01.T01:CDS
TATCATAACAGTTGTAGTAG+GGG 0.641841 1:+12127133 MsG0180000854.01.T01:CDS
TTGGCTAAGAGCAGGAAAAG+GGG 0.645369 1:+12128560 MsG0180000854.01.T01:intron
ACAATAGCATCTTTGTAACA+AGG 0.649686 1:+12129532 MsG0180000854.01.T01:exon
ATAACCAAACGAGGTGATAG+CGG 0.652735 1:-12128298 None:intergenic
CGTTGATACCCCTATCACGT+TGG 0.659437 1:-12128841 None:intergenic
CACCACCTCAATGATAACAC+GGG 0.666427 1:-12129398 None:intergenic
AGATAAGGACAGTAAGACAA+AGG 0.669370 1:-12128338 None:intergenic
TGAGTAAGCCGGTTTATCTG+GGG 0.673609 1:-12126040 None:intergenic
AAAGTTAGCTGGGATAACAG+TGG 0.691801 1:+12127834 MsG0180000854.01.T01:CDS
AAATGGGTGCTAATATCGTG+TGG 0.710937 1:+12129147 MsG0180000854.01.T01:CDS
AATGAATACATAACCAAACG+AGG 0.738565 1:-12128307 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCTCATATATTTATAAAA+AGG + Chr1:12129630-12129649 MsG0180000854.01.T01:three_prime_UTR 10.0%
!! TTATAAATATATGAGAATAA+GGG - Chr1:12129628-12129647 None:intergenic 10.0%
!! TTCTCATATATTTATAAAAA+GGG + Chr1:12129631-12129650 MsG0180000854.01.T01:three_prime_UTR 10.0%
!! TTTATAAATATATGAGAATA+AGG - Chr1:12129629-12129648 None:intergenic 10.0%
!! AGAAAATAAACAAATGAAAA+GGG + Chr1:12128818-12128837 MsG0180000854.01.T01:CDS 15.0%
!! ATAATACAAAAAATGAATCA+TGG + Chr1:12127981-12128000 MsG0180000854.01.T01:intron 15.0%
!! ATACATAACAATAATTAAAC+TGG - Chr1:12129038-12129057 None:intergenic 15.0%
!! ATCATGTTATGATTAATATT+TGG + Chr1:12127070-12127089 MsG0180000854.01.T01:intron 15.0%
!! TTAAAAAACAAAGAATTAGA+TGG - Chr1:12126811-12126830 None:intergenic 15.0%
!! TTTCATTTATACTTATTTAG+AGG - Chr1:12127049-12127068 None:intergenic 15.0%
!!! ATCTAATTCTTTGTTTTTTA+AGG + Chr1:12126810-12126829 MsG0180000854.01.T01:intron 15.0%
!!! ATTTTTCCATTATTTTGTTT+AGG + Chr1:12128773-12128792 MsG0180000854.01.T01:intron 15.0%
!!! TTATAGTTCTATTTGATAAT+AGG + Chr1:12127772-12127791 MsG0180000854.01.T01:intron 15.0%
!! AAATCCAAAAAAAATGTTTC+CGG - Chr1:12128928-12128947 None:intergenic 20.0%
!! AAGATTGATACCATATAATT+AGG - Chr1:12126257-12126276 None:intergenic 20.0%
!! AAGGAATATTCTGTTATAAA+AGG - Chr1:12127700-12127719 None:intergenic 20.0%
!! AATATTCTGTTATAAAAGGA+GGG - Chr1:12127696-12127715 None:intergenic 20.0%
!! AATGGAAAAATCAAATACAA+GGG - Chr1:12128764-12128783 None:intergenic 20.0%
!! AATTAAAATAGAAAGGAAGA+AGG - Chr1:12126174-12126193 None:intergenic 20.0%
!! AGATAACTAAATGATATAAG+TGG + Chr1:12126062-12126081 MsG0180000854.01.T01:five_prime_UTR 20.0%
!! ATGTATCCTAAACAAAATAA+TGG - Chr1:12128782-12128801 None:intergenic 20.0%
!! CAGAAAATAAACAAATGAAA+AGG + Chr1:12128817-12128836 MsG0180000854.01.T01:CDS 20.0%
!! TAAGAAATATTGTTAGTAGT+TGG - Chr1:12127652-12127671 None:intergenic 20.0%
!! TAATGGAAAAATCAAATACA+AGG - Chr1:12128765-12128784 None:intergenic 20.0%
!! TGTAGTATTTCCTAATTATA+TGG + Chr1:12126244-12126263 MsG0180000854.01.T01:intron 20.0%
!! TGTATTATTCAATAAGAAAG+AGG + Chr1:12127540-12127559 MsG0180000854.01.T01:intron 20.0%
!! TTATATATGTCTACTTACAA+AGG + Chr1:12128533-12128552 MsG0180000854.01.T01:intron 20.0%
!! TTCAGAGAATTAAAATAGAA+AGG - Chr1:12126181-12126200 None:intergenic 20.0%
!!! AATTCTTTGTTTTTTAAGGA+AGG + Chr1:12126814-12126833 MsG0180000854.01.T01:intron 20.0%
!!! ATGTATCATATATTTAGAAC+AGG - Chr1:12127394-12127413 None:intergenic 20.0%
!!! ATTCCTTAAAGTTTTAAACA+TGG + Chr1:12127713-12127732 MsG0180000854.01.T01:intron 20.0%
!!! CTTTTCATTTGTTTATTTTC+TGG - Chr1:12128819-12128838 None:intergenic 20.0%
!!! TAATATTTTATTACAGGTCA+TGG + Chr1:12129100-12129119 MsG0180000854.01.T01:intron 20.0%
!!! TAGTTTGCTTTTAAAACTTT+CGG - Chr1:12126767-12126786 None:intergenic 20.0%
!!! TGTATCATATATTTAGAACA+GGG - Chr1:12127393-12127412 None:intergenic 20.0%
!!! TTCCTTAAAGTTTTAAACAT+GGG + Chr1:12127714-12127733 MsG0180000854.01.T01:intron 20.0%
!!! TTGGTTTATGAATTTTGAAT+CGG - Chr1:12129174-12129193 None:intergenic 20.0%
! AACTACTCAACACTATTTAA+TGG + Chr1:12126550-12126569 MsG0180000854.01.T01:intron 25.0%
! AATATTGTTAGTAGTTGGTT+AGG - Chr1:12127647-12127666 None:intergenic 25.0%
! AATCCAAAAAAAATGTTTCC+GGG - Chr1:12128927-12128946 None:intergenic 25.0%
! ATATCATAACAGTTGTAGTA+GGG + Chr1:12127132-12127151 MsG0180000854.01.T01:CDS 25.0%
! ATATTCTGTTATAAAAGGAG+GGG - Chr1:12127695-12127714 None:intergenic 25.0%
! ATCAAACATGTTATTGATGT+TGG - Chr1:12126385-12126404 None:intergenic 25.0%
! ATCAATTCTTGAAGAGTAAA+GGG - Chr1:12127445-12127464 None:intergenic 25.0%
! ATGTAAAGTAATTTATGCTC+CGG - Chr1:12126528-12126547 None:intergenic 25.0%
! ATGTTAAGGTTTCTACAAAT+AGG + Chr1:12126903-12126922 MsG0180000854.01.T01:intron 25.0%
! ATGTTCATTGAATAATGTTC+CGG + Chr1:12126506-12126525 MsG0180000854.01.T01:intron 25.0%
! CAAAGATGAAAATTATGCAT+TGG - Chr1:12126987-12127006 None:intergenic 25.0%
! GAATATTCTGTTATAAAAGG+AGG - Chr1:12127697-12127716 None:intergenic 25.0%
! GCTAGAAATTGATTGAAAAA+TGG - Chr1:12129302-12129321 None:intergenic 25.0%
! GTGACAAAAATTGATTGATT+TGG + Chr1:12126411-12126430 MsG0180000854.01.T01:intron 25.0%
! TACAAAAAATGAATCATGGT+TGG + Chr1:12127985-12128004 MsG0180000854.01.T01:intron 25.0%
! TACAAAGACAATTCAAAAGT+TGG - Chr1:12129430-12129449 None:intergenic 25.0%
! TATTACACAAACTCTAATCA+TGG + Chr1:12126108-12126127 MsG0180000854.01.T01:CDS 25.0%
! TTTCTGTGAGTTTACAATAA+TGG + Chr1:12126312-12126331 MsG0180000854.01.T01:intron 25.0%
!! AACCCATGTTTAAAACTTTA+AGG - Chr1:12127719-12127738 None:intergenic 25.0%
!! ACTTTTGAATTGTCTTTGTA+TGG + Chr1:12129430-12129449 MsG0180000854.01.T01:CDS 25.0%
!! AGTTGAGAATAAAAAGCATA+AGG - Chr1:12126222-12126241 None:intergenic 25.0%
!! CAATCAATTTGAACTTGTTT+AGG + Chr1:12129222-12129241 MsG0180000854.01.T01:CDS 25.0%
!! TACTGTTATTTACGACATAA+TGG + Chr1:12128692-12128711 MsG0180000854.01.T01:CDS 25.0%
!! TAGTTCTATTTGATAATAGG+TGG + Chr1:12127775-12127794 MsG0180000854.01.T01:intron 25.0%
!! TGAACTTGTTTAGGTTAATT+TGG + Chr1:12129231-12129250 MsG0180000854.01.T01:CDS 25.0%
!! TGGTTTATGAATTTTGAATC+GGG - Chr1:12129173-12129192 None:intergenic 25.0%
!!! AGTTTGCTTTTAAAACTTTC+GGG - Chr1:12126766-12126785 None:intergenic 25.0%
!!! ATTTGTGGATTGATTTTGTA+TGG + Chr1:12127811-12127830 MsG0180000854.01.T01:CDS 25.0%
!!! TGGAATTTTGGTTTCAATTT+TGG - Chr1:12126735-12126754 None:intergenic 25.0%
!!! TTCATTTGTTTATTTTCTGG+TGG - Chr1:12128816-12128835 None:intergenic 25.0%
AAACATGTTATTGATGTTGG+CGG - Chr1:12126382-12126401 None:intergenic 30.0%
AATCAACTACACCATAAAGT+TGG - Chr1:12128433-12128452 None:intergenic 30.0%
AATCCTAGCAAATAAAACCT+TGG - Chr1:12129690-12129709 None:intergenic 30.0%
AATGAATACATAACCAAACG+AGG - Chr1:12128310-12128329 None:intergenic 30.0%
ACAATAGCATCTTTGTAACA+AGG + Chr1:12129532-12129551 MsG0180000854.01.T01:exon 30.0%
ACACGTTAAATGAATAGTCT+TGG - Chr1:12129193-12129212 None:intergenic 30.0%
ACTGTAAGTGAAAATAGAGA+TGG - Chr1:12127237-12127256 None:intergenic 30.0%
ATAGTATATATGTCGAGCTT+AGG + Chr1:12129583-12129602 MsG0180000854.01.T01:three_prime_UTR 30.0%
ATTTAGTTATCTGAGTAAGC+CGG - Chr1:12126054-12126073 None:intergenic 30.0%
ATTTCTGTTGGGAAATTTGT+TGG - Chr1:12126649-12126668 None:intergenic 30.0%
CAATAACATGTTTGATTCTG+CGG + Chr1:12126389-12126408 MsG0180000854.01.T01:intron 30.0%
CAATCCTGTGAGAAATAAAT+TGG + Chr1:12126953-12126972 MsG0180000854.01.T01:intron 30.0%
CACGTTAACTAATTTCTGTT+GGG - Chr1:12126660-12126679 None:intergenic 30.0%
CAGAAAAGTCTACAATAAGA+TGG + Chr1:12128472-12128491 MsG0180000854.01.T01:intron 30.0%
CATATCATAACAGTTGTAGT+AGG + Chr1:12127131-12127150 MsG0180000854.01.T01:CDS 30.0%
CATCAATTCTTGAAGAGTAA+AGG - Chr1:12127446-12127465 None:intergenic 30.0%
CTATTTAATGGTTAGAGACT+TGG + Chr1:12126562-12126581 MsG0180000854.01.T01:intron 30.0%
CTTTACTCTTCAAGAATTGA+TGG + Chr1:12127444-12127463 MsG0180000854.01.T01:intron 30.0%
GAGCAATATGCATTTGTATA+GGG - Chr1:12129367-12129386 None:intergenic 30.0%
GTTTCTCTCAGATTAAAACT+TGG - Chr1:12127621-12127640 None:intergenic 30.0%
TACACTCATGATGATATAGA+TGG - Chr1:12125973-12125992 None:intergenic 30.0%
TATCATAACAGTTGTAGTAG+GGG + Chr1:12127133-12127152 MsG0180000854.01.T01:CDS 30.0%
TCAATTCTTGAAGAGTAAAG+GGG - Chr1:12127444-12127463 None:intergenic 30.0%
TCACGTTAACTAATTTCTGT+TGG - Chr1:12126661-12126680 None:intergenic 30.0%
TCTTATAATCCCTACATGAT+CGG + Chr1:12128204-12128223 MsG0180000854.01.T01:CDS 30.0%
TGAGCAATATGCATTTGTAT+AGG - Chr1:12129368-12129387 None:intergenic 30.0%
! AAAACTTTCGGGTATTTGTA+TGG - Chr1:12126755-12126774 None:intergenic 30.0%
! AATTTCTTTTGCCAGTGATT+GGG - Chr1:12127289-12127308 None:intergenic 30.0%
! ACTTGTTTAGGTTAATTTGG+AGG + Chr1:12129234-12129253 MsG0180000854.01.T01:CDS 30.0%
! ATTTTGTATGGAAAGTTAGC+TGG + Chr1:12127823-12127842 MsG0180000854.01.T01:CDS 30.0%
! GATTTCTTTAGAGATAGAGT+TGG + Chr1:12129733-12129752 MsG0180000854.01.T01:three_prime_UTR 30.0%
! TAATTTCTTTTGCCAGTGAT+TGG - Chr1:12127290-12127309 None:intergenic 30.0%
! TGTTACTGTGTAGATTTTCA+TGG + Chr1:12126853-12126872 MsG0180000854.01.T01:intron 30.0%
! TTTTGTATGGAAAGTTAGCT+GGG + Chr1:12127824-12127843 MsG0180000854.01.T01:CDS 30.0%
!! AATCAATTTCTAGCTCTGTT+GGG + Chr1:12129308-12129327 MsG0180000854.01.T01:CDS 30.0%
!! ATAGTTGAGCTTCTTTTTCA+TGG + Chr1:12126702-12126721 MsG0180000854.01.T01:intron 30.0%
!! TGTTCTAAGAGCACATATTA+AGG - Chr1:12127013-12127032 None:intergenic 30.0%
!! TTGGATTTTATGAGCCTTAT+TGG + Chr1:12128940-12128959 MsG0180000854.01.T01:CDS 30.0%
!!! GATACATATTTTAGCAACGA+GGG + Chr1:12127407-12127426 MsG0180000854.01.T01:intron 30.0%
!!! TATCCAAGGTTTTATTTGCT+AGG + Chr1:12129684-12129703 MsG0180000854.01.T01:three_prime_UTR 30.0%
!!! TCTTTCTCTCCTATCTTTTT+TGG + Chr1:12125997-12126016 MsG0180000854.01.T01:five_prime_UTR 30.0%
!!! TGATACATATTTTAGCAACG+AGG + Chr1:12127406-12127425 MsG0180000854.01.T01:intron 30.0%
AAACCTTAACATGTTCCCTA+AGG - Chr1:12126895-12126914 None:intergenic 35.0%
AACATGTTATTGATGTTGGC+GGG - Chr1:12126381-12126400 None:intergenic 35.0%
AACCTTGGATAAAGTGACAA+AGG - Chr1:12129675-12129694 None:intergenic 35.0%
AATAACTACCCCAGATAAAC+CGG + Chr1:12126032-12126051 MsG0180000854.01.T01:five_prime_UTR 35.0%
AGATAAGGACAGTAAGACAA+AGG - Chr1:12128341-12128360 None:intergenic 35.0%
ATAGGGAAGAAGACAACTAA+TGG - Chr1:12129350-12129369 None:intergenic 35.0%
ATCATGGAACAAGATGATGA+TGG + Chr1:12126124-12126143 MsG0180000854.01.T01:CDS 35.0%
ATCCTCTACAACCAACTTTA+TGG + Chr1:12128419-12128438 MsG0180000854.01.T01:intron 35.0%
ATTGAAAAATGGCATTGCCA+TGG - Chr1:12129291-12129310 None:intergenic 35.0%
ATTTCAACGACGCGAAAAAA+TGG - Chr1:12129131-12129150 None:intergenic 35.0%
CAGTAACACACATCATTAGA+CGG - Chr1:12126841-12126860 None:intergenic 35.0%
CATGCTAACTTATGTCCTTA+GGG + Chr1:12126877-12126896 MsG0180000854.01.T01:intron 35.0%
CATGTCAGTTTGTGAAAGTT+GGG - Chr1:12128264-12128283 None:intergenic 35.0%
CTCATGATGATATAGATGGA+TGG - Chr1:12125969-12125988 None:intergenic 35.0%
GACTATTCATTTAACGTGTG+TGG + Chr1:12129194-12129213 MsG0180000854.01.T01:CDS 35.0%
GGTTATGTATTCATTGCAGT+TGG + Chr1:12128315-12128334 MsG0180000854.01.T01:CDS 35.0%
GTTGTTTGCATCCATAGAAA+AGG + Chr1:12128159-12128178 MsG0180000854.01.T01:CDS 35.0%
TACTATGCATACTTCTCCAA+GGG - Chr1:12128973-12128992 None:intergenic 35.0%
TAGAACAGGGCAAAATTCAA+TGG - Chr1:12127380-12127399 None:intergenic 35.0%
TCAACAAACTACCTGAGATA+AGG - Chr1:12128356-12128375 None:intergenic 35.0%
TCATGCTAACTTATGTCCTT+AGG + Chr1:12126876-12126895 MsG0180000854.01.T01:intron 35.0%
TCTTTGTATGGTTGTCTCAT+TGG + Chr1:12129442-12129461 MsG0180000854.01.T01:CDS 35.0%
TGCATAGTAATCCACATGAT+TGG + Chr1:12128984-12129003 MsG0180000854.01.T01:CDS 35.0%
TTACTATGCATACTTCTCCA+AGG - Chr1:12128974-12128993 None:intergenic 35.0%
TTATAAAAGGAGGGGAAAAG+TGG - Chr1:12127687-12127706 None:intergenic 35.0%
! AAGGTACATACCAGTTCTTT+TGG - Chr1:12126155-12126174 None:intergenic 35.0%
! CGGGTATTTGTATGGAATTT+TGG - Chr1:12126747-12126766 None:intergenic 35.0%
! TGTGCCAATTTATTTCTCAC+AGG - Chr1:12126960-12126979 None:intergenic 35.0%
! TTTTCTTCATACGCAAGAGT+CGG - Chr1:12126616-12126635 None:intergenic 35.0%
!! ATTTGGTGTGCAATATTGCA+GGG + Chr1:12127087-12127106 MsG0180000854.01.T01:intron 35.0%
!! CAATCAATTTCTAGCTCTGT+TGG + Chr1:12129307-12129326 MsG0180000854.01.T01:CDS 35.0%
!! TATCTGGGGTAGTTATTTTC+CGG - Chr1:12126029-12126048 None:intergenic 35.0%
!! TATTTGGTGTGCAATATTGC+AGG + Chr1:12127086-12127105 MsG0180000854.01.T01:intron 35.0%
!! TTCCTTTGTCACTTTATCCA+AGG + Chr1:12129670-12129689 MsG0180000854.01.T01:three_prime_UTR 35.0%
!!! ACACCCGGAAACATTTTTTT+TGG + Chr1:12128921-12128940 MsG0180000854.01.T01:CDS 35.0%
!!! ATTTTTTCGCGTCGTTGAAA+TGG + Chr1:12129130-12129149 MsG0180000854.01.T01:CDS 35.0%
!!! GTCTACTTACAAAGGCATTT+TGG + Chr1:12128541-12128560 MsG0180000854.01.T01:intron 35.0%
!!! TTTTTTCGCGTCGTTGAAAT+GGG + Chr1:12129131-12129150 MsG0180000854.01.T01:CDS 35.0%
AAAAAATGTTTCCGGGTGTG+TGG - Chr1:12128920-12128939 None:intergenic 40.0%
AAAATCGACCGTAGAGGATA+CGG + Chr1:12128500-12128519 MsG0180000854.01.T01:intron 40.0%
AAAGTTAGCTGGGATAACAG+TGG + Chr1:12127834-12127853 MsG0180000854.01.T01:CDS 40.0%
AAATGGGTGCTAATATCGTG+TGG + Chr1:12129147-12129166 MsG0180000854.01.T01:CDS 40.0%
AAGTTAGCTGGGATAACAGT+GGG + Chr1:12127835-12127854 MsG0180000854.01.T01:CDS 40.0%
ACACCACCTCAATGATAACA+CGG - Chr1:12129402-12129421 None:intergenic 40.0%
AGCATAACCGGAACACAAAT+AGG + Chr1:12128591-12128610 MsG0180000854.01.T01:CDS 40.0%
ATAACCAAACGAGGTGATAG+CGG - Chr1:12128301-12128320 None:intergenic 40.0%
ATCCCAAAACCGATCATGTA+GGG - Chr1:12128216-12128235 None:intergenic 40.0%
ATGATTGGAGCATATCAGGT+TGG + Chr1:12128999-12129018 MsG0180000854.01.T01:intron 40.0%
CCAACTTTCACAAACTGACA+TGG + Chr1:12128262-12128281 MsG0180000854.01.T01:CDS 40.0%
CCATGTCAGTTTGTGAAAGT+TGG - Chr1:12128265-12128284 None:intergenic 40.0%
CTATGAATCCGTATCCTCTA+CGG - Chr1:12128511-12128530 None:intergenic 40.0%
GATCATAAAATCGACCGTAG+AGG + Chr1:12128494-12128513 MsG0180000854.01.T01:intron 40.0%
GATGGTAAAGCCAAAAGAAC+TGG + Chr1:12126142-12126161 MsG0180000854.01.T01:CDS 40.0%
GCATAACCGGAACACAAATA+GGG + Chr1:12128592-12128611 MsG0180000854.01.T01:CDS 40.0%
GTCTTGTAGCTGATTGCTAT+AGG + Chr1:12127255-12127274 MsG0180000854.01.T01:CDS 40.0%
TATCCCAAAACCGATCATGT+AGG - Chr1:12128217-12128236 None:intergenic 40.0%
TATTTGTGTTCCGGTTATGC+TGG - Chr1:12128592-12128611 None:intergenic 40.0%
TGGACACTTAAGCAATTCGT+AGG + Chr1:12126582-12126601 MsG0180000854.01.T01:intron 40.0%
TGTCCTTAGGGAACATGTTA+AGG + Chr1:12126889-12126908 MsG0180000854.01.T01:intron 40.0%
TGTCTTACTGTCCTTATCTC+AGG + Chr1:12128342-12128361 MsG0180000854.01.T01:CDS 40.0%
TTCCTACTATGTAGTTGCCT+TGG + Chr1:12128876-12128895 MsG0180000854.01.T01:CDS 40.0%
TTTGGCTAAGAGCAGGAAAA+GGG + Chr1:12128559-12128578 MsG0180000854.01.T01:intron 40.0%
! CACCATAAAGTTGGTTGTAG+AGG - Chr1:12128424-12128443 None:intergenic 40.0%
! CAGCTTCAAGTCCTTTTCTA+TGG - Chr1:12128173-12128192 None:intergenic 40.0%
!! AATCCCTACATGATCGGTTT+TGG + Chr1:12128210-12128229 MsG0180000854.01.T01:CDS 40.0%
!! ATCCCTACATGATCGGTTTT+GGG + Chr1:12128211-12128230 MsG0180000854.01.T01:CDS 40.0%
!! TTTTGGCTAAGAGCAGGAAA+AGG + Chr1:12128558-12128577 MsG0180000854.01.T01:intron 40.0%
!!! CTATCTTTTTTGGCAGTCAC+CGG + Chr1:12126007-12126026 MsG0180000854.01.T01:five_prime_UTR 40.0%
ACCAGCTATCCATCCTAGTT+GGG - Chr1:12127189-12127208 None:intergenic 45.0%
ACTAGCAACCATTCTTGCCA+TGG + Chr1:12129271-12129290 MsG0180000854.01.T01:CDS 45.0%
AGCCAAGGCAACTACATAGT+AGG - Chr1:12128881-12128900 None:intergenic 45.0%
ATAACAGTTGTAGTAGGGGC+AGG + Chr1:12127137-12127156 MsG0180000854.01.T01:CDS 45.0%
ATGAAAAGGGCCAACGTGAT+AGG + Chr1:12128831-12128850 MsG0180000854.01.T01:CDS 45.0%
CAAGCTGTCAAGAGCTACTT+AGG + Chr1:12127320-12127339 MsG0180000854.01.T01:CDS 45.0%
CACCACCTCAATGATAACAC+GGG - Chr1:12129401-12129420 None:intergenic 45.0%
CCAAGGGCTACTATCCAATA+AGG - Chr1:12128957-12128976 None:intergenic 45.0%
CCACATGATTGGAGCATATC+AGG + Chr1:12128995-12129014 MsG0180000854.01.T01:CDS 45.0%
CCTGATATGCTCCAATCATG+TGG - Chr1:12128998-12129017 None:intergenic 45.0%
CCTTATTGGATAGTAGCCCT+TGG + Chr1:12128954-12128973 MsG0180000854.01.T01:CDS 45.0%
CGGTGACTGCCAAAAAAGAT+AGG - Chr1:12126009-12126028 None:intergenic 45.0%
CTAGGATGGATAGCTGGTAT+AGG + Chr1:12127191-12127210 MsG0180000854.01.T01:CDS 45.0%
GCAATATTGCAGGGAATGTG+TGG + Chr1:12127096-12127115 MsG0180000854.01.T01:intron 45.0%
GCATACCCGTGTTATCATTG+AGG + Chr1:12129393-12129412 MsG0180000854.01.T01:CDS 45.0%
GGAACGATGCAAGTGATTTG+TGG + Chr1:12127796-12127815 MsG0180000854.01.T01:CDS 45.0%
TAACAGTTGTAGTAGGGGCA+GGG + Chr1:12127138-12127157 MsG0180000854.01.T01:CDS 45.0%
TAACTGCTGCAGAGAAAGTG+TGG + Chr1:12128622-12128641 MsG0180000854.01.T01:CDS 45.0%
TACCAGCTATCCATCCTAGT+TGG - Chr1:12127190-12127209 None:intergenic 45.0%
TACCCGTGTTATCATTGAGG+TGG + Chr1:12129396-12129415 MsG0180000854.01.T01:CDS 45.0%
TGAAAAGGGCCAACGTGATA+GGG + Chr1:12128832-12128851 MsG0180000854.01.T01:CDS 45.0%
TGGCGTGTTTGCACTTCAAT+GGG + Chr1:12128642-12128661 MsG0180000854.01.T01:CDS 45.0%
TGTTGGGAGCGATTGGATTT+GGG + Chr1:12129324-12129343 MsG0180000854.01.T01:CDS 45.0%
TTCTCTGCAGCAGTTAGTTC+CGG - Chr1:12128618-12128637 None:intergenic 45.0%
TTGGCTAAGAGCAGGAAAAG+GGG + Chr1:12128560-12128579 MsG0180000854.01.T01:intron 45.0%
! CTGAGTAAGCCGGTTTATCT+GGG - Chr1:12126044-12126063 None:intergenic 45.0%
! TCTGAGTAAGCCGGTTTATC+TGG - Chr1:12126045-12126064 None:intergenic 45.0%
! TGAGTAAGCCGGTTTATCTG+GGG - Chr1:12126043-12126062 None:intergenic 45.0%
!!! AAGGCATTTTGGCTAAGAGC+AGG + Chr1:12128552-12128571 MsG0180000854.01.T01:intron 45.0%
!! TAATGTAATATTATTATATA+TGG - Chr1:12127945-12127964 None:intergenic 5.0%
!!! ATAATTTAATATTTTATTAC+AGG + Chr1:12129094-12129113 MsG0180000854.01.T01:intron 5.0%
AACAGTTGTAGTAGGGGCAG+GGG + Chr1:12127139-12127158 MsG0180000854.01.T01:CDS 50.0%
AACCGGAACACAAATAGGGC+CGG + Chr1:12128596-12128615 MsG0180000854.01.T01:CDS 50.0%
AGGTTTCCAGACCCAATCAC+TGG + Chr1:12127275-12127294 MsG0180000854.01.T01:CDS 50.0%
ATTGCCGCTATCACCTCGTT+TGG + Chr1:12128294-12128313 MsG0180000854.01.T01:CDS 50.0%
CACCAAAAGCAGCATAGCCA+AGG - Chr1:12128896-12128915 None:intergenic 50.0%
CGTTGATACCCCTATCACGT+TGG - Chr1:12128844-12128863 None:intergenic 50.0%
CTGTTGGGAGCGATTGGATT+TGG + Chr1:12129323-12129342 MsG0180000854.01.T01:CDS 50.0%
GAAAAGGGCCAACGTGATAG+GGG + Chr1:12128833-12128852 MsG0180000854.01.T01:CDS 50.0%
GTGGCGTGTTTGCACTTCAA+TGG + Chr1:12128641-12128660 MsG0180000854.01.T01:CDS 50.0%
TATCCATCCTAGTTGGGCCA+TGG - Chr1:12127183-12127202 None:intergenic 50.0%
TGGCATTGCCATGGCAAGAA+TGG - Chr1:12129282-12129301 None:intergenic 50.0%
TTCCGGCCCTATTTGTGTTC+CGG - Chr1:12128601-12128620 None:intergenic 50.0%
! CTTTTGCCAGTGATTGGGTC+TGG - Chr1:12127284-12127303 None:intergenic 50.0%
!! AAACGAGGTGATAGCGGCAA+TGG - Chr1:12128295-12128314 None:intergenic 50.0%
!! ATTTTAGCAACGAGGGCGAG+CGG + Chr1:12127414-12127433 MsG0180000854.01.T01:intron 50.0%
!!! TGCCTTGGCTATGCTGCTTT+TGG + Chr1:12128891-12128910 MsG0180000854.01.T01:CDS 50.0%
GCCCAACTAGGATGGATAGC+TGG + Chr1:12127185-12127204 MsG0180000854.01.T01:CDS 55.0%
GGAGCTCAAGAGCTCTGCAA+TGG + Chr1:12127561-12127580 MsG0180000854.01.T01:intron 55.0%
! GGGGCATCTACCAGCATAAC+CGG + Chr1:12128579-12128598 MsG0180000854.01.T01:CDS 55.0%
! TTGGCGGGCAGAACTGATGA+AGG - Chr1:12126366-12126385 None:intergenic 55.0%
!! AGGGGTGTTGGCTCTAGCAT+GGG + Chr1:12127157-12127176 MsG0180000854.01.T01:CDS 55.0%
!! CTAGCTCTGTTGGGAGCGAT+TGG + Chr1:12129317-12129336 MsG0180000854.01.T01:CDS 55.0%
!! GCTTTTGGTGACCACACACC+CGG + Chr1:12128906-12128925 MsG0180000854.01.T01:CDS 55.0%
! TGTAGTAGGGGCAGGGGTGT+TGG + Chr1:12127145-12127164 MsG0180000854.01.T01:CDS 60.0%
!! CAGGGGTGTTGGCTCTAGCA+TGG + Chr1:12127156-12127175 MsG0180000854.01.T01:CDS 60.0%
!! GTTGGCTCTAGCATGGGCCA+TGG + Chr1:12127163-12127182 MsG0180000854.01.T01:CDS 60.0%
GCATGGGCCATGGCCCAACT+AGG + Chr1:12127173-12127192 MsG0180000854.01.T01:CDS 65.0%
GGGCCATGGCCCAACTAGGA+TGG + Chr1:12127177-12127196 MsG0180000854.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 12125960 12129772 12125960 ID=MsG0180000854.01;Name=MsG0180000854.01
Chr1 mRNA 12125960 12129772 12125960 ID=MsG0180000854.01.T01;Parent=MsG0180000854.01;Name=MsG0180000854.01.T01;_AED=0.44;_eAED=0.44;_QI=143|1|1|1|1|1|7|234|463
Chr1 exon 12129116 12129772 12129116 ID=MsG0180000854.01.T01:exon:388;Parent=MsG0180000854.01.T01
Chr1 exon 12128795 12129016 12128795 ID=MsG0180000854.01.T01:exon:387;Parent=MsG0180000854.01.T01
Chr1 exon 12128574 12128713 12128574 ID=MsG0180000854.01.T01:exon:386;Parent=MsG0180000854.01.T01
Chr1 exon 12128146 12128363 12128146 ID=MsG0180000854.01.T01:exon:385;Parent=MsG0180000854.01.T01
Chr1 exon 12127794 12127887 12127794 ID=MsG0180000854.01.T01:exon:384;Parent=MsG0180000854.01.T01
Chr1 exon 12127108 12127341 12127108 ID=MsG0180000854.01.T01:exon:383;Parent=MsG0180000854.01.T01
Chr1 exon 12125960 12126163 12125960 ID=MsG0180000854.01.T01:exon:382;Parent=MsG0180000854.01.T01
Chr1 five_prime_UTR 12125960 12126102 12125960 ID=MsG0180000854.01.T01:five_prime_utr;Parent=MsG0180000854.01.T01
Chr1 CDS 12126103 12126163 12126103 ID=MsG0180000854.01.T01:cds;Parent=MsG0180000854.01.T01
Chr1 CDS 12127108 12127341 12127108 ID=MsG0180000854.01.T01:cds;Parent=MsG0180000854.01.T01
Chr1 CDS 12127794 12127887 12127794 ID=MsG0180000854.01.T01:cds;Parent=MsG0180000854.01.T01
Chr1 CDS 12128146 12128363 12128146 ID=MsG0180000854.01.T01:cds;Parent=MsG0180000854.01.T01
Chr1 CDS 12128574 12128713 12128574 ID=MsG0180000854.01.T01:cds;Parent=MsG0180000854.01.T01
Chr1 CDS 12128795 12129016 12128795 ID=MsG0180000854.01.T01:cds;Parent=MsG0180000854.01.T01
Chr1 CDS 12129116 12129538 12129116 ID=MsG0180000854.01.T01:cds;Parent=MsG0180000854.01.T01
Chr1 three_prime_UTR 12129539 12129772 12129539 ID=MsG0180000854.01.T01:three_prime_utr;Parent=MsG0180000854.01.T01
Gene Sequence

>MsG0180000854.01.T01

ATGAGTATTACACAAACTCTAATCATGGAACAAGATGATGATGGTAAAGCCAAAAGAACTGGGAATGTGTGGACTGCTGTTACACATATCATAACAGTTGTAGTAGGGGCAGGGGTGTTGGCTCTAGCATGGGCCATGGCCCAACTAGGATGGATAGCTGGTATAGGCAGTATAGTAATCTTTGCATCCATCTCTATTTTCACTTACAGTCTTGTAGCTGATTGCTATAGGTTTCCAGACCCAATCACTGGCAAAAGAAATTATACTTACATGCAAGCTGTCAAGAGCTACTTAGGTGGAACGATGCAAGTGATTTGTGGATTGATTTTGTATGGAAAGTTAGCTGGGATAACAGTGGGCTACACAATTACTTCATCGACAAGCTTAGCAGAAATAAACAAAGTTGTTTGCATCCATAGAAAAGGACTTGAAGCTGATTGCAGCACTTCTTATAATCCCTACATGATCGGTTTTGGGATATTGCAGATTTTCTTGTCTCAAATTCCCAACTTTCACAAACTGACATGGATCTCAACCATTGCCGCTATCACCTCGTTTGGTTATGTATTCATTGCAGTTGGCCTTTGTCTTACTGTCCTTATCTCAGGAAAAGGGGCATCTACCAGCATAACCGGAACACAAATAGGGCCGGAACTAACTGCTGCAGAGAAAGTGTGGCGTGTTTGCACTTCAATGGGAAACATAGCTCTTGCTAGCACTTATGCTACTGTTATTTACGACATAATGGATACATTAAAATCACATCCACCAGAAAATAAACAAATGAAAAGGGCCAACGTGATAGGGGTATCAACGATGACAATGATATTCCTACTATGTAGTTGCCTTGGCTATGCTGCTTTTGGTGACCACACACCCGGAAACATTTTTTTTGGATTTTATGAGCCTTATTGGATAGTAGCCCTTGGAGAAGTATGCATAGTAATCCACATGATTGGAGCATATCAGGTCATGGCACAACCATTTTTTCGCGTCGTTGAAATGGGTGCTAATATCGTGTGGCCCGATTCAAAATTCATAAACCAAGACTATTCATTTAACGTGTGTGGTGCAACAATCAATTTGAACTTGTTTAGGTTAATTTGGAGGACGATGTTTGTGATACTAGCAACCATTCTTGCCATGGCAATGCCATTTTTCAATCAATTTCTAGCTCTGTTGGGAGCGATTGGATTTGGGCCATTAGTTGTCTTCTTCCCTATACAAATGCATATTGCTCAGAAGCGCATACCCGTGTTATCATTGAGGTGGTGTGCGCTCCAACTTTTGAATTGTCTTTGTATGGTTGTCTCATTGGCTGCAGTAGTTGCTTCAGTTCATGAAATTAGCGAAAATATTCACAAATACAAAATTTTTGCTTATAAACAATAG

Protein sequence

>MsG0180000854.01.T01

MSITQTLIMEQDDDGKAKRTGNVWTAVTHIITVVVGAGVLALAWAMAQLGWIAGIGSIVIFASISIFTYSLVADCYRFPDPITGKRNYTYMQAVKSYLGGTMQVICGLILYGKLAGITVGYTITSSTSLAEINKVVCIHRKGLEADCSTSYNPYMIGFGILQIFLSQIPNFHKLTWISTIAAITSFGYVFIAVGLCLTVLISGKGASTSITGTQIGPELTAAEKVWRVCTSMGNIALASTYATVIYDIMDTLKSHPPENKQMKRANVIGVSTMTMIFLLCSCLGYAAFGDHTPGNIFFGFYEPYWIVALGEVCIVIHMIGAYQVMAQPFFRVVEMGANIVWPDSKFINQDYSFNVCGATINLNLFRLIWRTMFVILATILAMAMPFFNQFLALLGAIGFGPLVVFFPIQMHIAQKRIPVLSLRWCALQLLNCLCMVVSLAAVVASVHEISENIHKYKIFAYKQ*