AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041020.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041020.01.T01 MTR_7g102430 98.374 123 2 0 20 142 1314 1436 9.50e-80 257
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041020.01.T01 AT2G36810 71.545 123 35 0 20 142 1090 1212 5.30e-59 197
MsG0780041020.01.T01 AT2G36810 71.545 123 35 0 20 142 1308 1430 5.34e-59 197
MsG0780041020.01.T01 AT2G36810 71.545 123 35 0 20 142 1321 1443 5.61e-59 197

Find 32 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTTCCCTTTGGTATTTC+TGG -0.048340 7:-85606238 None:intergenic
CGGTGGACTTGGTTCGCTTT+TGG 0.232038 7:+85608473 MsG0780041020.01.T01:CDS
AGCTTCCCTTTGGTATTTCT+GGG 0.240256 7:-85606237 None:intergenic
TGAAAACATAATACCTCTTT+TGG 0.273122 7:-85604444 None:intergenic
GAATCTTCTGACTGCATTCC+AGG 0.277917 7:+85604210 MsG0780041020.01.T01:CDS
TGTCAGAATTTGTTCGTTAT+AGG 0.324348 7:+85606273 MsG0780041020.01.T01:CDS
TTCAGAAAGTTCCCCATCTC+TGG 0.386868 7:-85604364 None:intergenic
CAGCAGCAGCAGCTTCCCTT+TGG 0.398998 7:-85606247 None:intergenic
ATTAACTAGCATTGAAATGA+AGG 0.409958 7:-85608604 None:intergenic
CAACACATTCGCAGAATGCC+TGG 0.452276 7:-85604228 None:intergenic
GAGAGGTGGATTAGTCTCAT+TGG 0.484175 7:+85604390 MsG0780041020.01.T01:CDS
AAACTATACAGCGGTGGACT+TGG 0.485357 7:+85608462 MsG0780041020.01.T01:intron
ATCTATAAAGCGGCCAAAAG+AGG 0.503880 7:+85604431 MsG0780041020.01.T01:CDS
TTGTTTGAGAGGATTGGTAC+AGG 0.507436 7:+85608557 MsG0780041020.01.T01:CDS
CCGCTTTATAGATATGCATC+CGG 0.513094 7:-85604421 None:intergenic
TGACTACCTTTCCCATCTCA+AGG 0.526963 7:-85604255 None:intergenic
CAGACGAGTCTTCTACTGTT+CGG 0.552063 7:+85608529 MsG0780041020.01.T01:CDS
ATGTGTTGGTGACCTTGAGA+TGG 0.568557 7:+85604243 MsG0780041020.01.T01:CDS
AGTCTCATTGGAGATATAGC+CGG 0.577080 7:+85604402 MsG0780041020.01.T01:CDS
AACTTTCTGAAAATGAGAGG+TGG 0.588127 7:+85604376 MsG0780041020.01.T01:CDS
AACACGGAATTCACAAGCGC+AGG 0.591139 7:-85604160 None:intergenic
GCTTCCCTTTGGTATTTCTG+GGG 0.613069 7:-85606236 None:intergenic
TCGACCCCAGAAATACCAAA+GGG 0.619878 7:+85606232 MsG0780041020.01.T01:CDS
TGTGTTGGTGACCTTGAGAT+GGG 0.623761 7:+85604244 MsG0780041020.01.T01:CDS
CAGGCATTCTGCGAATGTGT+TGG 0.634060 7:+85604229 MsG0780041020.01.T01:CDS
GGGAACTTTCTGAAAATGAG+AGG 0.645209 7:+85604373 MsG0780041020.01.T01:CDS
ATCGACCCCAGAAATACCAA+AGG 0.645559 7:+85606231 MsG0780041020.01.T01:CDS
CCGGATGCATATCTATAAAG+CGG 0.652312 7:+85604421 MsG0780041020.01.T01:CDS
AGTCAGAAGATTCCTGCACA+AGG 0.667488 7:-85604200 None:intergenic
GATAAAAGACAAACTAAACA+CGG 0.678027 7:-85604176 None:intergenic
TGGTGACCTTGAGATGGGAA+AGG 0.689642 7:+85604249 MsG0780041020.01.T01:CDS
ATAACGAACAAATTCTGACA+AGG 0.700452 7:-85606270 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATAAGTGTATATTAA+TGG + Chr7:85606016-85606035 MsG0780041020.01.T01:intron 10.0%
!! TAATTTAATTGAATAGTTTA+TGG + Chr7:85607620-85607639 MsG0780041020.01.T01:intron 10.0%
!! AAAATGAATTAATTCTTCAT+TGG + Chr7:85606041-85606060 MsG0780041020.01.T01:intron 15.0%
!! AGCTAAAAAAAATTAATAGA+AGG - Chr7:85605614-85605633 None:intergenic 15.0%
!! CTAAATAATAAGATAGAAAA+AGG + Chr7:85605793-85605812 MsG0780041020.01.T01:intron 15.0%
!! TTAAAAATATAAACTATACC+TGG + Chr7:85607673-85607692 MsG0780041020.01.T01:intron 15.0%
!! TTAAATAATGAATGTTTATG+TGG + Chr7:85606352-85606371 MsG0780041020.01.T01:intron 15.0%
!!! TCAAAAATTGACAAATATTT+TGG - Chr7:85606199-85606218 None:intergenic 15.0%
!! AATGAGTAATTATAATGAGA+TGG - Chr7:85605889-85605908 None:intergenic 20.0%
!! AATGCATACTTAATATTCTT+TGG - Chr7:85604976-85604995 None:intergenic 20.0%
!! ACTTATGAATATACAACAAT+AGG + Chr7:85607228-85607247 MsG0780041020.01.T01:intron 20.0%
!! AGAATATTAAGTATGCATTT+AGG + Chr7:85604977-85604996 MsG0780041020.01.T01:intron 20.0%
!! ATCTTATATATGTAGTAACT+TGG - Chr7:85607420-85607439 None:intergenic 20.0%
!! TGCATAATAATTATATCAGT+TGG + Chr7:85604885-85604904 MsG0780041020.01.T01:intron 20.0%
!! TTAAATTAAAATCATGCACA+AGG + Chr7:85608196-85608215 MsG0780041020.01.T01:intron 20.0%
!!! AAGCATAATTATGTTTTCAT+AGG - Chr7:85606551-85606570 None:intergenic 20.0%
!!! AGCATAATTATGTTTTCATA+GGG - Chr7:85606550-85606569 None:intergenic 20.0%
!!! TAATATTCTTTGGTTTTTGA+CGG - Chr7:85604966-85604985 None:intergenic 20.0%
!!! TAATGCATTTAGTTTCATAA+AGG + Chr7:85604664-85604683 MsG0780041020.01.T01:intron 20.0%
!!! TCAATTTTTGAAAAGATCAT+TGG + Chr7:85606208-85606227 MsG0780041020.01.T01:CDS 20.0%
!!! TCATTAATGATTTTTCACTA+TGG + Chr7:85606764-85606783 MsG0780041020.01.T01:intron 20.0%
!!! TTATTTTGACATTTGAAAAG+AGG + Chr7:85608402-85608421 MsG0780041020.01.T01:intron 20.0%
! AAGTTTAGTCAATATTGTGT+AGG - Chr7:85605660-85605679 None:intergenic 25.0%
! AATCAAGATTGCTTGATTAT+AGG + Chr7:85607256-85607275 MsG0780041020.01.T01:intron 25.0%
! AATCATTAATGAAAGTTCCT+AGG - Chr7:85606756-85606775 None:intergenic 25.0%
! ACAATTATTATTGTGAGAAG+AGG - Chr7:85608375-85608394 None:intergenic 25.0%
! ACTTTCAAACTCTTTAAATC+TGG + Chr7:85606830-85606849 MsG0780041020.01.T01:intron 25.0%
! ATATGTATCTATTAACACAG+GGG - Chr7:85604476-85604495 None:intergenic 25.0%
! ATATTCTCACAGTTGAAATA+CGG - Chr7:85604838-85604857 None:intergenic 25.0%
! ATCAAGATTGCTTGATTATA+GGG + Chr7:85607257-85607276 MsG0780041020.01.T01:intron 25.0%
! ATTAAAACTTAAACCATACC+AGG + Chr7:85607486-85607505 MsG0780041020.01.T01:intron 25.0%
! CAATATTGTGTAGGAAAATA+TGG - Chr7:85605651-85605670 None:intergenic 25.0%
! CAATCAGAAAAATATATGCA+AGG + Chr7:85607319-85607338 MsG0780041020.01.T01:intron 25.0%
! CATTGCATTTCATTATTAGA+GGG - Chr7:85605108-85605127 None:intergenic 25.0%
! CTTTCAAACTCTTTAAATCT+GGG + Chr7:85606831-85606850 MsG0780041020.01.T01:intron 25.0%
! GATAAAAGACAAACTAAACA+CGG - Chr7:85604179-85604198 None:intergenic 25.0%
! GATATGTATCTATTAACACA+GGG - Chr7:85604477-85604496 None:intergenic 25.0%
! GGTATTATAATAACATGGAA+AGG - Chr7:85607892-85607911 None:intergenic 25.0%
! GTTGTATATTCATAAGTCTT+GGG - Chr7:85607225-85607244 None:intergenic 25.0%
! TACAAAAACACTCACAAATA+AGG + Chr7:85607959-85607978 MsG0780041020.01.T01:intron 25.0%
! TACACAACCAATTGATATAA+TGG + Chr7:85604930-85604949 MsG0780041020.01.T01:intron 25.0%
! TCAATTTATAGTTGTTCCAT+GGG + Chr7:85606571-85606590 MsG0780041020.01.T01:intron 25.0%
! TCATTGCATTTCATTATTAG+AGG - Chr7:85605109-85605128 None:intergenic 25.0%
! TGTTGTATATTCATAAGTCT+TGG - Chr7:85607226-85607245 None:intergenic 25.0%
! TTCAATTTATAGTTGTTCCA+TGG + Chr7:85606570-85606589 MsG0780041020.01.T01:intron 25.0%
!! AACTAAATGCATTAAGCTTT+TGG - Chr7:85604658-85604677 None:intergenic 25.0%
!! ATAATTATGTTTTCATAGGG+GGG - Chr7:85606547-85606566 None:intergenic 25.0%
!! ATTAACTAGCATTGAAATGA+AGG - Chr7:85608607-85608626 None:intergenic 25.0%
!! ATTACATTTGCTCCATTTTA+AGG + Chr7:85604281-85604300 MsG0780041020.01.T01:intron 25.0%
!! ATTGACTAAACTTTTGTCTA+AGG + Chr7:85605667-85605686 MsG0780041020.01.T01:intron 25.0%
!! ATTTAGTTTCATAAAGGAAG+AGG + Chr7:85604670-85604689 MsG0780041020.01.T01:intron 25.0%
!! CATAATTATGTTTTCATAGG+GGG - Chr7:85606548-85606567 None:intergenic 25.0%
!! CCTTAGTATTTAAACCTTTT+GGG + Chr7:85608054-85608073 MsG0780041020.01.T01:intron 25.0%
!! GACTTCATTATTTTCAATGA+TGG + Chr7:85606786-85606805 MsG0780041020.01.T01:intron 25.0%
!! GCATAATTATGTTTTCATAG+GGG - Chr7:85606549-85606568 None:intergenic 25.0%
!! TATTTCTTTGCGATTTTATG+TGG + Chr7:85605747-85605766 MsG0780041020.01.T01:intron 25.0%
!! TGAAAACATAATACCTCTTT+TGG - Chr7:85604447-85604466 None:intergenic 25.0%
!! TTCAGGGTATTATAATAACA+TGG - Chr7:85607897-85607916 None:intergenic 25.0%
!! TTTTAACAGGACATAAAACT+TGG - Chr7:85606168-85606187 None:intergenic 25.0%
!!! AACCTTTTTAAGGTTTACTT+TGG + Chr7:85607083-85607102 MsG0780041020.01.T01:intron 25.0%
!!! TAAATACTAAGGCATTGTTT+GGG - Chr7:85608046-85608065 None:intergenic 25.0%
!!! TATATTGACTTCTTACTGTT+TGG + Chr7:85607644-85607663 MsG0780041020.01.T01:intron 25.0%
!!! TATGATTTGTTTGTGACTTT+AGG + Chr7:85607705-85607724 MsG0780041020.01.T01:intron 25.0%
!!! TTAAATACTAAGGCATTGTT+TGG - Chr7:85608047-85608066 None:intergenic 25.0%
AAAACAGAAGGAACATGAAT+TGG - Chr7:85606423-85606442 None:intergenic 30.0%
AAACAGAAGGAACATGAATT+GGG - Chr7:85606422-85606441 None:intergenic 30.0%
AAGTTGTCTACTGTTAATGT+TGG + Chr7:85606320-85606339 MsG0780041020.01.T01:intron 30.0%
AATAAATGACTAGATAGACG+TGG - Chr7:85607298-85607317 None:intergenic 30.0%
AATCATGAATAGAGACAACA+AGG - Chr7:85608175-85608194 None:intergenic 30.0%
AATGAGATGGATGAGTAATT+AGG - Chr7:85605876-85605895 None:intergenic 30.0%
AATTTCCACACAAATACTTG+TGG - Chr7:85605432-85605451 None:intergenic 30.0%
ACAAATCTATCCATTCAAGT+TGG - Chr7:85607794-85607813 None:intergenic 30.0%
ACCATCTTACATCCTTAAAA+TGG - Chr7:85604296-85604315 None:intergenic 30.0%
AGATTAAGCATCAAACTAAC+AGG - Chr7:85605506-85605525 None:intergenic 30.0%
AGCTCAAAAAATGTATTGGA+GGG + Chr7:85607846-85607865 MsG0780041020.01.T01:intron 30.0%
ATAAATGACTAGATAGACGT+GGG - Chr7:85607297-85607316 None:intergenic 30.0%
ATAACGAACAAATTCTGACA+AGG - Chr7:85606273-85606292 None:intergenic 30.0%
ATAATAACATGGAAAGGACT+TGG - Chr7:85607886-85607905 None:intergenic 30.0%
ATACGTAAATAACCTATCCT+AGG - Chr7:85605155-85605174 None:intergenic 30.0%
ATAGAGAAGTTAAATACGAG+AGG + Chr7:85605321-85605340 MsG0780041020.01.T01:intron 30.0%
ATGTCCAATTCTATGAGTAA+GGG - Chr7:85607145-85607164 None:intergenic 30.0%
ATTGCTTCTTGTGACATTTA+GGG + Chr7:85606396-85606415 MsG0780041020.01.T01:intron 30.0%
CAATTACTTAAAATTCGACC+TGG + Chr7:85605206-85605225 MsG0780041020.01.T01:intron 30.0%
CATATCAACATGTTTCTTAG+AGG - Chr7:85607452-85607471 None:intergenic 30.0%
CATGCAAATTCGTATTCATT+TGG - Chr7:85604499-85604518 None:intergenic 30.0%
CATTAATCGAGAAGAAAAAC+CGG - Chr7:85605534-85605553 None:intergenic 30.0%
CCCAAAAGGTTTAAATACTA+AGG - Chr7:85608057-85608076 None:intergenic 30.0%
CTAAGAAACATGTTGATATG+AGG + Chr7:85607452-85607471 MsG0780041020.01.T01:intron 30.0%
GACCAAAGTAAACCTTAAAA+AGG - Chr7:85607088-85607107 None:intergenic 30.0%
GGAAAAAAAGACTGATGAAA+GGG + Chr7:85607746-85607765 MsG0780041020.01.T01:intron 30.0%
GGATATGTATCTATTAACAC+AGG - Chr7:85604478-85604497 None:intergenic 30.0%
TACCCTTATTATTAGCAGTT+TGG + Chr7:85605983-85606002 MsG0780041020.01.T01:intron 30.0%
TAGAAAAAGGCTTGTCATTA+AGG + Chr7:85605806-85605825 MsG0780041020.01.T01:intron 30.0%
TATTGCTTCTTGTGACATTT+AGG + Chr7:85606395-85606414 MsG0780041020.01.T01:intron 30.0%
TATTGTGTAGGAAAATATGG+AGG - Chr7:85605648-85605667 None:intergenic 30.0%
TGGAAAAAAAGACTGATGAA+AGG + Chr7:85607745-85607764 MsG0780041020.01.T01:intron 30.0%
TTAAACATCAAGAACCAGTT+TGG - Chr7:85605458-85605477 None:intergenic 30.0%
TTCTTCTCGATTAATGTATG+AGG + Chr7:85605538-85605557 MsG0780041020.01.T01:intron 30.0%
TTGAATTGTGCAAAACTCTT+AGG + Chr7:85605908-85605927 MsG0780041020.01.T01:intron 30.0%
TTGATGCTTAATCTGTAATC+CGG + Chr7:85605512-85605531 MsG0780041020.01.T01:intron 30.0%
! AACCTAACCTAAATGCTTTT+GGG - Chr7:85604702-85604721 None:intergenic 30.0%
! ATTCATGTTCCTTCTGTTTT+AGG + Chr7:85606423-85606442 MsG0780041020.01.T01:intron 30.0%
! ATTTGTTTGTGACTTTAGGA+GGG + Chr7:85607709-85607728 MsG0780041020.01.T01:intron 30.0%
! CAAATCTATCCATTCAAGTT+GGG - Chr7:85607793-85607812 None:intergenic 30.0%
! GCCTTAGTATTTAAACCTTT+TGG + Chr7:85608053-85608072 MsG0780041020.01.T01:intron 30.0%
! TGTCAGAATTTGTTCGTTAT+AGG + Chr7:85606273-85606292 MsG0780041020.01.T01:CDS 30.0%
!! AGAATCAATTTGCTATTCCT+AGG + Chr7:85605135-85605154 MsG0780041020.01.T01:intron 30.0%
!! ATGTCTTCATTTTAGCCTTT+TGG + Chr7:85608288-85608307 MsG0780041020.01.T01:intron 30.0%
!! ATTTTAGCCTTTTGGAAAGT+CGG + Chr7:85608296-85608315 MsG0780041020.01.T01:intron 30.0%
!! TCCATTTTAAGGATGTAAGA+TGG + Chr7:85604292-85604311 MsG0780041020.01.T01:intron 30.0%
!! TTTGGATCTGTGTTTTTAAC+AGG - Chr7:85606181-85606200 None:intergenic 30.0%
AAAGACTGATGAAAGGGAAA+TGG + Chr7:85607752-85607771 MsG0780041020.01.T01:intron 35.0%
AATCATGCACAAGGTAAGAA+AGG + Chr7:85608205-85608224 MsG0780041020.01.T01:intron 35.0%
AGAATCACAAAACAAGACGT+TGG - Chr7:85607523-85607542 None:intergenic 35.0%
AGTTCATGTGTTCATAAGCT+TGG + Chr7:85606880-85606899 MsG0780041020.01.T01:intron 35.0%
ATGCTTCATCTTAAGTGTGA+GGG + Chr7:85606640-85606659 MsG0780041020.01.T01:intron 35.0%
ATTGCCTCTATTGCACTATA+GGG + Chr7:85604786-85604805 MsG0780041020.01.T01:intron 35.0%
CAAATCATACAAAGAGAACC+AGG - Chr7:85607694-85607713 None:intergenic 35.0%
CAAGCTTATGAACACTATAG+AGG - Chr7:85606702-85606721 None:intergenic 35.0%
CCTTATTATTAGCAGTTTGG+CGG + Chr7:85605986-85606005 MsG0780041020.01.T01:intron 35.0%
CGCCAAACTGCTAATAATAA+GGG - Chr7:85605988-85606007 None:intergenic 35.0%
CTCTATAGTGTTCATAAGCT+TGG + Chr7:85606700-85606719 MsG0780041020.01.T01:intron 35.0%
CTTATTATTAGCAGTTTGGC+GGG + Chr7:85605987-85606006 MsG0780041020.01.T01:intron 35.0%
GAGCTCAAAAAATGTATTGG+AGG + Chr7:85607845-85607864 MsG0780041020.01.T01:intron 35.0%
GATGTCCAATTCTATGAGTA+AGG - Chr7:85607146-85607165 None:intergenic 35.0%
GATTGCCATAAACTATACAG+CGG + Chr7:85608453-85608472 MsG0780041020.01.T01:intron 35.0%
GGAGAGCTCAAAAAATGTAT+TGG + Chr7:85607842-85607861 MsG0780041020.01.T01:intron 35.0%
GGCATTTGCTTTGATGTAAA+AGG - Chr7:85605485-85605504 None:intergenic 35.0%
GTCATAACTCTAGTCAATGT+GGG - Chr7:85606680-85606699 None:intergenic 35.0%
GTCATGGCCATTATATCAAT+TGG - Chr7:85604940-85604959 None:intergenic 35.0%
GTGTGGAAATTTATCCAAAC+TGG + Chr7:85605441-85605460 MsG0780041020.01.T01:intron 35.0%
TAAGAATCAACTCTCCCAAA+AGG - Chr7:85608071-85608090 None:intergenic 35.0%
TACTCATAGAATTGGACATC+TGG + Chr7:85607146-85607165 MsG0780041020.01.T01:intron 35.0%
TCAAAACTATCAGCAGATGA+AGG - Chr7:85604604-85604623 None:intergenic 35.0%
TCTCGATTAATGTATGAGGA+TGG + Chr7:85605542-85605561 MsG0780041020.01.T01:intron 35.0%
TGATTGATCCTCTAATCACT+TGG - Chr7:85604764-85604783 None:intergenic 35.0%
TGTCCAATTCTATGAGTAAG+GGG - Chr7:85607144-85607163 None:intergenic 35.0%
TTTGGAGAATTTCCAGAACT+CGG - Chr7:85604640-85604659 None:intergenic 35.0%
! AACTTTCTGAAAATGAGAGG+TGG + Chr7:85604376-85604395 MsG0780041020.01.T01:CDS 35.0%
! ACTTATCAGCATTTTCTGTC+TGG - Chr7:85604523-85604542 None:intergenic 35.0%
! AGGATTGCTCAACCTTTTTA+AGG + Chr7:85607073-85607092 MsG0780041020.01.T01:intron 35.0%
! CAACCTAACCTAAATGCTTT+TGG - Chr7:85604703-85604722 None:intergenic 35.0%
! GATTTGTTTGTGACTTTAGG+AGG + Chr7:85607708-85607727 MsG0780041020.01.T01:intron 35.0%
! TGAATTAGCTTCTTGCTTGT+GGG + Chr7:85605231-85605250 MsG0780041020.01.T01:intron 35.0%
! TTGAATTAGCTTCTTGCTTG+TGG + Chr7:85605230-85605249 MsG0780041020.01.T01:intron 35.0%
! TTGAGACAGAGTGAGTATTT+TGG + Chr7:85606106-85606125 MsG0780041020.01.T01:intron 35.0%
! TTTGTTTGTGACTTTAGGAG+GGG + Chr7:85607710-85607729 MsG0780041020.01.T01:intron 35.0%
!! AAAATATGGAGGTATCTGAG+TGG - Chr7:85605637-85605656 None:intergenic 35.0%
!! AAGGATCATTTGTTTCTGTG+AGG + Chr7:85605825-85605844 MsG0780041020.01.T01:intron 35.0%
!! ATTCAGATTTTAGCCAGAGA+TGG + Chr7:85604351-85604370 MsG0780041020.01.T01:intron 35.0%
!! CAATTTGCTATTCCTAGGAT+AGG + Chr7:85605140-85605159 MsG0780041020.01.T01:intron 35.0%
!! GAGTGTTTTTGTAGAGAATC+AGG - Chr7:85607952-85607971 None:intergenic 35.0%
!! TCAACTCATGAACTAGCTTT+CGG - Chr7:85607054-85607073 None:intergenic 35.0%
!! TGAACACATGAACTAGCTTT+CGG - Chr7:85606874-85606893 None:intergenic 35.0%
!! TTCAGATTTTAGCCAGAGAT+GGG + Chr7:85604352-85604371 MsG0780041020.01.T01:intron 35.0%
!!! ATTTTTTGAGCTCTCCCATA+GGG - Chr7:85607838-85607857 None:intergenic 35.0%
!!! TCATCTGCTGATAGTTTTGA+AGG + Chr7:85604604-85604623 MsG0780041020.01.T01:intron 35.0%
AACTCCAACCAAGTGATTAG+AGG + Chr7:85604753-85604772 MsG0780041020.01.T01:intron 40.0%
ACAAAACAAGACGTTGGAAC+TGG - Chr7:85607517-85607536 None:intergenic 40.0%
ACGATGTATATGCACCAACT+TGG - Chr7:85607391-85607410 None:intergenic 40.0%
ACTAATGCGGGTAGAATAAC+AGG - Chr7:85606618-85606637 None:intergenic 40.0%
ACTGATGAAAGGGAAATGGA+AGG + Chr7:85607756-85607775 MsG0780041020.01.T01:intron 40.0%
AGAATTGGACATCTGGATGA+TGG + Chr7:85607153-85607172 MsG0780041020.01.T01:intron 40.0%
AGAATTTCCAGAACTCGGTT+GGG - Chr7:85604635-85604654 None:intergenic 40.0%
AGATAGTCACCCAACTTGAA+TGG + Chr7:85607781-85607800 MsG0780041020.01.T01:intron 40.0%
AGCTTCCCTTTGGTATTTCT+GGG - Chr7:85606240-85606259 None:intergenic 40.0%
AGTCTCATTGGAGATATAGC+CGG + Chr7:85604402-85604421 MsG0780041020.01.T01:CDS 40.0%
ATATCAACACTCTCCCAAGT+TGG + Chr7:85607374-85607393 MsG0780041020.01.T01:intron 40.0%
ATCTATAAAGCGGCCAAAAG+AGG + Chr7:85604431-85604450 MsG0780041020.01.T01:CDS 40.0%
ATCTTTCGCTATAAGAGAGC+AGG + Chr7:85605586-85605605 MsG0780041020.01.T01:intron 40.0%
CATACCCTATAGTGCAATAG+AGG - Chr7:85604793-85604812 None:intergenic 40.0%
CATACTACAAATCCCCCTAT+GGG + Chr7:85607821-85607840 MsG0780041020.01.T01:intron 40.0%
CATGCTTCATCTTAAGTGTG+AGG + Chr7:85606639-85606658 MsG0780041020.01.T01:intron 40.0%
CATTGCCTCTATTGCACTAT+AGG + Chr7:85604785-85604804 MsG0780041020.01.T01:intron 40.0%
CATTGTTTGGGAGTTTGGAA+GGG - Chr7:85608034-85608053 None:intergenic 40.0%
CCGCCAAACTGCTAATAATA+AGG - Chr7:85605989-85606008 None:intergenic 40.0%
CCGCTTTATAGATATGCATC+CGG - Chr7:85604424-85604443 None:intergenic 40.0%
CCGGATGCATATCTATAAAG+CGG + Chr7:85604421-85604440 MsG0780041020.01.T01:CDS 40.0%
CGATGTATATGCACCAACTT+GGG - Chr7:85607390-85607409 None:intergenic 40.0%
CTAATGCGGGTAGAATAACA+GGG - Chr7:85606617-85606636 None:intergenic 40.0%
CTCACACTTAAGATGAAGCA+TGG - Chr7:85606641-85606660 None:intergenic 40.0%
GAAAGCTAGTTCATGAGTTG+AGG + Chr7:85607053-85607072 MsG0780041020.01.T01:intron 40.0%
GCAAGAAGCTAATTCAAACC+AGG - Chr7:85605227-85605246 None:intergenic 40.0%
GCATTTCATTATTAGAGGGC+AGG - Chr7:85605104-85605123 None:intergenic 40.0%
GGTCATAACTCTAGTCAATG+TGG - Chr7:85606681-85606700 None:intergenic 40.0%
GTCCAATTCTATGAGTAAGG+GGG - Chr7:85607143-85607162 None:intergenic 40.0%
GTCTCTATGATCTGGTAGTT+AGG + Chr7:85608102-85608121 MsG0780041020.01.T01:intron 40.0%
TAACAAGCGTCTCTATGATC+TGG + Chr7:85608094-85608113 MsG0780041020.01.T01:intron 40.0%
TCATACTACAAATCCCCCTA+TGG + Chr7:85607820-85607839 MsG0780041020.01.T01:intron 40.0%
TCATATCTCTAGTCCACGTT+GGG + Chr7:85607106-85607125 MsG0780041020.01.T01:intron 40.0%
TCCAATTCTATGAGTAAGGG+GGG - Chr7:85607142-85607161 None:intergenic 40.0%
TCTGTCCACAAGTATTTGTG+TGG + Chr7:85605424-85605443 MsG0780041020.01.T01:intron 40.0%
TGATCCTCTAATCACTTGGT+TGG - Chr7:85604760-85604779 None:intergenic 40.0%
TGCTCTCTTATAGCGAAAGA+TGG - Chr7:85605587-85605606 None:intergenic 40.0%
TGCTTCATCTTAAGTGTGAG+GGG + Chr7:85606641-85606660 MsG0780041020.01.T01:intron 40.0%
TGCTTGACTGGATCATTCAT+GGG + Chr7:85607559-85607578 MsG0780041020.01.T01:intron 40.0%
! ACCTAAATGCTTTTGGGCTT+CGG - Chr7:85604696-85604715 None:intergenic 40.0%
! AGATGAAGCATGGACTAATG+CGG - Chr7:85606631-85606650 None:intergenic 40.0%
! GATCATAGAGACGCTTGTTA+TGG - Chr7:85608094-85608113 None:intergenic 40.0%
! GGGAACTTTCTGAAAATGAG+AGG + Chr7:85604373-85604392 MsG0780041020.01.T01:CDS 40.0%
! GTTTTGTGATTCTGTTTCGC+AGG + Chr7:85607530-85607549 MsG0780041020.01.T01:intron 40.0%
! TGTCTTTTATCTCCTTGTGC+AGG + Chr7:85604188-85604207 MsG0780041020.01.T01:CDS 40.0%
! TTGTTTGAGAGGATTGGTAC+AGG + Chr7:85608557-85608576 MsG0780041020.01.T01:CDS 40.0%
!! AGCCCAAAAGCATTTAGGTT+AGG + Chr7:85604697-85604716 MsG0780041020.01.T01:intron 40.0%
!! CAACTCATGAACTAGCTTTC+GGG - Chr7:85607053-85607072 None:intergenic 40.0%
!! GAACACATGAACTAGCTTTC+GGG - Chr7:85606873-85606892 None:intergenic 40.0%
!! TAAGGCATTGTTTGGGAGTT+TGG - Chr7:85608039-85608058 None:intergenic 40.0%
!! TCAGATTTTAGCCAGAGATG+GGG + Chr7:85604353-85604372 MsG0780041020.01.T01:intron 40.0%
!! TTTGTTTCTGTGAGGTTGCA+TGG + Chr7:85605833-85605852 MsG0780041020.01.T01:intron 40.0%
!!! CATTTTTTGAGCTCTCCCAT+AGG - Chr7:85607839-85607858 None:intergenic 40.0%
!!! TTTTTTGAGCTCTCCCATAG+GGG - Chr7:85607837-85607856 None:intergenic 40.0%
ACAGTCTACACCTTGTGAGT+CGG + Chr7:85606723-85606742 MsG0780041020.01.T01:intron 45.0%
ACCCCCCTTACTCATAGAAT+TGG + Chr7:85607138-85607157 MsG0780041020.01.T01:intron 45.0%
AGTCAGAAGATTCCTGCACA+AGG - Chr7:85604203-85604222 None:intergenic 45.0%
ATCGACCCCAGAAATACCAA+AGG + Chr7:85606231-85606250 MsG0780041020.01.T01:CDS 45.0%
CAGACGAGTCTTCTACTGTT+CGG + Chr7:85608529-85608548 MsG0780041020.01.T01:CDS 45.0%
CAGCTTCCCTTTGGTATTTC+TGG - Chr7:85606241-85606260 None:intergenic 45.0%
GAATCTTCTGACTGCATTCC+AGG + Chr7:85604210-85604229 MsG0780041020.01.T01:CDS 45.0%
GAGAATTTCCAGAACTCGGT+TGG - Chr7:85604636-85604655 None:intergenic 45.0%
GCACTATAGGGTATGCATGT+TGG + Chr7:85604798-85604817 MsG0780041020.01.T01:intron 45.0%
GCATTGTTTGGGAGTTTGGA+AGG - Chr7:85608035-85608054 None:intergenic 45.0%
GGACGCTATCCTAAAACAGA+AGG - Chr7:85606435-85606454 None:intergenic 45.0%
GTCATATCTCTAGTCCACGT+TGG + Chr7:85607105-85607124 MsG0780041020.01.T01:intron 45.0%
GTCCACCGCTGTATAGTTTA+TGG - Chr7:85608461-85608480 None:intergenic 45.0%
GTGCTTGACTGGATCATTCA+TGG + Chr7:85607558-85607577 MsG0780041020.01.T01:intron 45.0%
TAAGTGTGAGGGGATGTGTT+GGG + Chr7:85606651-85606670 MsG0780041020.01.T01:intron 45.0%
TCGACCCCAGAAATACCAAA+GGG + Chr7:85606232-85606251 MsG0780041020.01.T01:CDS 45.0%
TGACTACCTTTCCCATCTCA+AGG - Chr7:85604258-85604277 None:intergenic 45.0%
TGCCATAAACTATACAGCGG+TGG + Chr7:85608456-85608475 MsG0780041020.01.T01:intron 45.0%
TTAAGTGTGAGGGGATGTGT+TGG + Chr7:85606650-85606669 MsG0780041020.01.T01:intron 45.0%
TTAGGATAGCGTCCTTAGTG+AGG + Chr7:85606441-85606460 MsG0780041020.01.T01:intron 45.0%
TTCAGAAAGTTCCCCATCTC+TGG - Chr7:85604367-85604386 None:intergenic 45.0%
! AAACTATACAGCGGTGGACT+TGG + Chr7:85608462-85608481 MsG0780041020.01.T01:intron 45.0%
! ACAGCAAGCTTTTGACAGCT+AGG - Chr7:85604866-85604885 None:intergenic 45.0%
! CTAGCTTTCGGGATTGAGTT+AGG - Chr7:85606862-85606881 None:intergenic 45.0%
! GATGAAGCATGGACTAATGC+GGG - Chr7:85606630-85606649 None:intergenic 45.0%
! GCTTCCCTTTGGTATTTCTG+GGG - Chr7:85606239-85606258 None:intergenic 45.0%
! TCGAAGACCGACTTTCCAAA+AGG - Chr7:85608306-85608325 None:intergenic 45.0%
! TTGTGTATTTTCCTCGCCTC+AGG + Chr7:85608229-85608248 MsG0780041020.01.T01:intron 45.0%
! TTTGTGACTTTAGGAGGGGA+AGG + Chr7:85607714-85607733 MsG0780041020.01.T01:intron 45.0%
!! ATGTGTTGGTGACCTTGAGA+TGG + Chr7:85604243-85604262 MsG0780041020.01.T01:CDS 45.0%
!! CTGGATGATGGACAAATGTG+TGG + Chr7:85607165-85607184 MsG0780041020.01.T01:intron 45.0%
!! GAGAGGTGGATTAGTCTCAT+TGG + Chr7:85604390-85604409 MsG0780041020.01.T01:CDS 45.0%
!! GCGCTTTTGTTTGAGAGGAT+TGG + Chr7:85608551-85608570 MsG0780041020.01.T01:CDS 45.0%
!! TGGTTTTTGACGGACAGTCA+TGG - Chr7:85604956-85604975 None:intergenic 45.0%
!! TGTGTTGGTGACCTTGAGAT+GGG + Chr7:85604244-85604263 MsG0780041020.01.T01:CDS 45.0%
!! TTTTTGAGCTCTCCCATAGG+GGG - Chr7:85607836-85607855 None:intergenic 45.0%
!!! TGGTTCGCTTTTGGAGCAAA+TGG + Chr7:85608482-85608501 MsG0780041020.01.T01:CDS 45.0%
!!! TAATATATTTTTAATTTTCA+GGG - Chr7:85607913-85607932 None:intergenic 5.0%
!!! TTAATATATTTTTAATTTTC+AGG - Chr7:85607914-85607933 None:intergenic 5.0%
AACACGGAATTCACAAGCGC+AGG - Chr7:85604163-85604182 None:intergenic 50.0%
ATAGGGGGGCTTGAACATAG+AGG - Chr7:85606533-85606552 None:intergenic 50.0%
ATAGTTGTTCCATGGGCGTG+AGG + Chr7:85606578-85606597 MsG0780041020.01.T01:intron 50.0%
CAACACATTCGCAGAATGCC+TGG - Chr7:85604231-85604250 None:intergenic 50.0%
CACGATCTTGCGTAGCACTT+AGG - Chr7:85606477-85606496 None:intergenic 50.0%
CAGGCATTCTGCGAATGTGT+TGG + Chr7:85604229-85604248 MsG0780041020.01.T01:CDS 50.0%
CTTGAACATAGAGGCTGCGA+CGG - Chr7:85606524-85606543 None:intergenic 50.0%
GACTGGATCATTCATGGGTC+TGG + Chr7:85607564-85607583 MsG0780041020.01.T01:intron 50.0%
GGTATAACCCAACCGAGTTC+TGG + Chr7:85604625-85604644 MsG0780041020.01.T01:intron 50.0%
GTTTGGGAGTTTGGAAGGGA+GGG - Chr7:85608030-85608049 None:intergenic 50.0%
TAGTTGTTCCATGGGCGTGA+GGG + Chr7:85606579-85606598 MsG0780041020.01.T01:intron 50.0%
TGCAAGAGCTAATGGTCCTG+AGG - Chr7:85608248-85608267 None:intergenic 50.0%
TGGTGACCTTGAGATGGGAA+AGG + Chr7:85604249-85604268 MsG0780041020.01.T01:CDS 50.0%
TGTGAGTCGGCTAGAAACCT+AGG + Chr7:85606736-85606755 MsG0780041020.01.T01:intron 50.0%
TGTTTGGGAGTTTGGAAGGG+AGG - Chr7:85608031-85608050 None:intergenic 50.0%
TTTGGGAGTTTGGAAGGGAG+GGG - Chr7:85608029-85608048 None:intergenic 50.0%
! ACCATTAGCTCTTGCACGAG+GGG + Chr7:85608252-85608271 MsG0780041020.01.T01:intron 50.0%
! CGTGTAGCGTTGCAGTTTTG+AGG + Chr7:85606493-85606512 MsG0780041020.01.T01:intron 50.0%
! GACCATTAGCTCTTGCACGA+GGG + Chr7:85608251-85608270 MsG0780041020.01.T01:intron 50.0%
! TGACTTTAGGAGGGGAAGGA+AGG + Chr7:85607718-85607737 MsG0780041020.01.T01:intron 50.0%
!! AGGTTTCTAGCCGACTCACA+AGG - Chr7:85606736-85606755 None:intergenic 50.0%
!! GCCGAAGCCCAAAAGCATTT+AGG + Chr7:85604692-85604711 MsG0780041020.01.T01:intron 50.0%
!! GTTCGGCGCTTTTGTTTGAG+AGG + Chr7:85608546-85608565 MsG0780041020.01.T01:CDS 50.0%
ACCCCTCGTGCAAGAGCTAA+TGG - Chr7:85608256-85608275 None:intergenic 55.0%
ACGTTGGAACTGGTGTGACC+TGG - Chr7:85607507-85607526 None:intergenic 55.0%
AGGAGGGGAAGGAAGGACTT+TGG + Chr7:85607725-85607744 MsG0780041020.01.T01:intron 55.0%
AGTTGTTCCATGGGCGTGAG+GGG + Chr7:85606580-85606599 MsG0780041020.01.T01:intron 55.0%
GGAACTGGTGTGACCTGGTA+TGG - Chr7:85607502-85607521 None:intergenic 55.0%
TTTGCGGAAAGGGGAGGAGT+TGG - Chr7:85608005-85608024 None:intergenic 55.0%
TTTGGAAGGGAGGGGCTTTG+CGG - Chr7:85608021-85608040 None:intergenic 55.0%
! GGACCATTAGCTCTTGCACG+AGG + Chr7:85608250-85608269 MsG0780041020.01.T01:intron 55.0%
! GGGTGTCATAAGACCCAACG+TGG - Chr7:85607122-85607141 None:intergenic 55.0%
!! CGGTGGACTTGGTTCGCTTT+TGG + Chr7:85608473-85608492 MsG0780041020.01.T01:CDS 55.0%
AAGGGAGGGGCTTTGCGGAA+AGG - Chr7:85608016-85608035 None:intergenic 60.0%
AGGGAGGGGCTTTGCGGAAA+GGG - Chr7:85608015-85608034 None:intergenic 60.0%
CAGCAGCAGCAGCTTCCCTT+TGG - Chr7:85606250-85606269 None:intergenic 60.0%
CGCAGGCTTGAGTGCTTGAC+TGG + Chr7:85607547-85607566 MsG0780041020.01.T01:intron 60.0%
GAGCTAATGGTCCTGAGGCG+AGG - Chr7:85608243-85608262 None:intergenic 60.0%
GCGTCCTTAGTGAGGCGTAG+TGG + Chr7:85606449-85606468 MsG0780041020.01.T01:intron 60.0%
GGAGCCACTACGCCTCACTA+AGG - Chr7:85606456-85606475 None:intergenic 60.0%
AGGGGCTTTGCGGAAAGGGG+AGG - Chr7:85608011-85608030 None:intergenic 65.0%
CATCACACCCCTCACGCCCA+TGG - Chr7:85606590-85606609 None:intergenic 65.0%
GGGAGGGGCTTTGCGGAAAG+GGG - Chr7:85608014-85608033 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 85604151 85608641 85604151 ID=MsG0780041020.01;Name=MsG0780041020.01
Chr7 mRNA 85604151 85608641 85604151 ID=MsG0780041020.01.T01;Parent=MsG0780041020.01;Name=MsG0780041020.01.T01;_AED=0.49;_eAED=0.61;_QI=0|1|0.5|1|1|0.75|4|0|161
Chr7 exon 85604151 85604270 85604151 ID=MsG0780041020.01.T01:exon:17872;Parent=MsG0780041020.01.T01
Chr7 exon 85604357 85604452 85604357 ID=MsG0780041020.01.T01:exon:17873;Parent=MsG0780041020.01.T01
Chr7 exon 85606194 85606294 85606194 ID=MsG0780041020.01.T01:exon:17874;Parent=MsG0780041020.01.T01
Chr7 exon 85608473 85608641 85608473 ID=MsG0780041020.01.T01:exon:17875;Parent=MsG0780041020.01.T01
Chr7 CDS 85604151 85604270 85604151 ID=MsG0780041020.01.T01:cds;Parent=MsG0780041020.01.T01
Chr7 CDS 85604357 85604452 85604357 ID=MsG0780041020.01.T01:cds;Parent=MsG0780041020.01.T01
Chr7 CDS 85606194 85606294 85606194 ID=MsG0780041020.01.T01:cds;Parent=MsG0780041020.01.T01
Chr7 CDS 85608473 85608641 85608473 ID=MsG0780041020.01.T01:cds;Parent=MsG0780041020.01.T01
Gene Sequence

>MsG0780041020.01.T01

ATGCACACACCTGCGCTTGTGAATTCCGTGTTTAGTTTGTCTTTTATCTCCTTGTGCAGGAATCTTCTGACTGCATTCCAGGCATTCTGCGAATGTGTTGGTGACCTTGAGATGGGAAAGATTTTAGCCAGAGATGGGGAACTTTCTGAAAATGAGAGGTGGATTAGTCTCATTGGAGATATAGCCGGATGCATATCTATAAAGCGGCCAAAAGAGATCCAAAATATTTGTCAATTTTTGAAAAGATCATTGGATCGACCCCAGAAATACCAAAGGGAAGCTGCTGCTGCTGCCTTGTCAGAATTTGTTCGTTATAGCGGTGGACTTGGTTCGCTTTTGGAGCAAATGGTTGACGTTGTATGTAGACGTGTATCAGACGAGTCTTCTACTGTTCGGCGCTTTTGTTTGAGAGGATTGGTACAGGTTGTTATCTTATCATGTGACTATTCCTTCATTTCAATGCTAGTTAATACAACATTGATTTAG
Protein sequence

>MsG0780041020.01.T01

MHTPALVNSVFSLSFISLCRNLLTAFQAFCECVGDLEMGKILARDGELSENERWISLIGDIAGCISIKRPKEIQNICQFLKRSLDRPQKYQREAAAAALSEFVRYSGGLGSLLEQMVDVVCRRVSDESSTVRRFCLRGLVQVVILSCDYSFISMLVNTTLI*