Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041059.01.T01 | XP_013450066.1 | 97.549 | 204 | 3 | 1 | 30 | 233 | 31 | 232 | 1.50E-142 | 408 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041059.01.T01 | Q9LZR0 | 63.492 | 126 | 38 | 2 | 55 | 173 | 70 | 194 | 2.10E-43 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041059.01.T01 | A0A072U315 | 97.549 | 204 | 3 | 1 | 30 | 233 | 31 | 232 | 7.19e-143 | 408 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0780041059.01.T01 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0280010611.01 | MsG0780041059.01 | 0.811787 | 5.878534e-51 | 3.672538e-48 |
| MsG0480021060.01 | MsG0780041059.01 | 0.807326 | 5.338698e-50 | 2.964983e-47 |
| MsG0480021894.01 | MsG0780041059.01 | 0.827028 | 1.961491e-54 | 1.871022e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041059.01.T01 | MTR_7g103340 | 97.549 | 204 | 3 | 1 | 30 | 233 | 31 | 232 | 1.82e-146 | 408 |
| MsG0780041059.01.T01 | MTR_1g061660 | 57.789 | 199 | 64 | 8 | 45 | 233 | 44 | 232 | 1.52e-61 | 192 |
| MsG0780041059.01.T01 | MTR_8g468210 | 48.872 | 133 | 57 | 2 | 25 | 150 | 44 | 172 | 4.29e-33 | 121 |
| MsG0780041059.01.T01 | MTR_6g007647 | 58.824 | 102 | 35 | 1 | 61 | 155 | 32 | 133 | 7.07e-32 | 117 |
| MsG0780041059.01.T01 | MTR_6g007647 | 58.824 | 102 | 35 | 1 | 61 | 155 | 66 | 167 | 1.02e-31 | 117 |
| MsG0780041059.01.T01 | MTR_5g039000 | 41.333 | 150 | 69 | 2 | 8 | 150 | 35 | 172 | 8.53e-31 | 115 |
| MsG0780041059.01.T01 | MTR_4g107650 | 48.889 | 135 | 49 | 4 | 61 | 175 | 94 | 228 | 1.07e-29 | 113 |
| MsG0780041059.01.T01 | MTR_3g080100 | 47.761 | 134 | 68 | 2 | 55 | 186 | 13 | 146 | 1.76e-29 | 110 |
| MsG0780041059.01.T01 | MTR_3g080100 | 47.761 | 134 | 68 | 2 | 55 | 186 | 52 | 185 | 3.44e-29 | 110 |
| MsG0780041059.01.T01 | MTR_3g086790 | 46.774 | 124 | 57 | 2 | 40 | 154 | 36 | 159 | 2.41e-28 | 109 |
| MsG0780041059.01.T01 | MTR_7g010020 | 48.462 | 130 | 63 | 2 | 50 | 175 | 67 | 196 | 4.31e-28 | 107 |
| MsG0780041059.01.T01 | MTR_6g011610 | 55.435 | 92 | 41 | 0 | 61 | 152 | 95 | 186 | 9.13e-28 | 107 |
| MsG0780041059.01.T01 | MTR_6g011610 | 55.435 | 92 | 41 | 0 | 61 | 152 | 76 | 167 | 1.05e-27 | 106 |
| MsG0780041059.01.T01 | MTR_8g089895 | 52.475 | 101 | 41 | 1 | 61 | 154 | 53 | 153 | 3.34e-27 | 106 |
| MsG0780041059.01.T01 | MTR_5g038280 | 55.670 | 97 | 36 | 1 | 62 | 151 | 87 | 183 | 1.22e-26 | 105 |
| MsG0780041059.01.T01 | MTR_8g469430 | 52.577 | 97 | 39 | 1 | 62 | 151 | 89 | 185 | 8.32e-25 | 99.4 |
| MsG0780041059.01.T01 | MTR_3g092150 | 40.441 | 136 | 67 | 3 | 64 | 199 | 40 | 161 | 8.27e-24 | 95.9 |
| MsG0780041059.01.T01 | MTR_8g026960 | 42.857 | 119 | 56 | 3 | 66 | 174 | 38 | 154 | 5.29e-21 | 88.6 |
| MsG0780041059.01.T01 | MTR_4g097600 | 47.368 | 95 | 50 | 0 | 55 | 149 | 120 | 214 | 2.53e-20 | 87.0 |
| MsG0780041059.01.T01 | MTR_5g019680 | 47.826 | 92 | 48 | 0 | 62 | 153 | 53 | 144 | 2.06e-19 | 83.6 |
| MsG0780041059.01.T01 | MTR_4g100550 | 45.455 | 88 | 48 | 0 | 62 | 149 | 120 | 207 | 4.12e-18 | 81.3 |
| MsG0780041059.01.T01 | MTR_1g054285 | 42.105 | 95 | 55 | 0 | 55 | 149 | 147 | 241 | 1.55e-17 | 80.1 |
| MsG0780041059.01.T01 | MTR_1g017090 | 44.330 | 97 | 54 | 0 | 53 | 149 | 121 | 217 | 1.99e-17 | 79.7 |
| MsG0780041059.01.T01 | MTR_5g019650 | 47.475 | 99 | 45 | 2 | 62 | 153 | 53 | 151 | 2.66e-17 | 78.2 |
| MsG0780041059.01.T01 | MTR_7g093430 | 41.935 | 93 | 54 | 0 | 57 | 149 | 155 | 247 | 5.44e-17 | 78.6 |
| MsG0780041059.01.T01 | MTR_5g014890 | 44.681 | 94 | 51 | 1 | 55 | 148 | 117 | 209 | 2.34e-16 | 76.3 |
| MsG0780041059.01.T01 | MTR_5g013010 | 45.455 | 88 | 48 | 0 | 62 | 149 | 136 | 223 | 2.48e-16 | 76.6 |
| MsG0780041059.01.T01 | MTR_2g061030 | 40.000 | 100 | 60 | 0 | 50 | 149 | 188 | 287 | 3.22e-16 | 76.6 |
| MsG0780041059.01.T01 | MTR_4g084750 | 42.268 | 97 | 55 | 1 | 53 | 149 | 57 | 152 | 1.54e-15 | 72.8 |
| MsG0780041059.01.T01 | MTR_8g006705 | 43.182 | 88 | 50 | 0 | 62 | 149 | 146 | 233 | 2.24e-15 | 73.9 |
| MsG0780041059.01.T01 | MTR_4g126900 | 44.048 | 84 | 47 | 0 | 65 | 148 | 91 | 174 | 3.21e-14 | 69.7 |
| MsG0780041059.01.T01 | MTR_6g477820 | 41.000 | 100 | 54 | 2 | 60 | 157 | 28 | 124 | 6.22e-12 | 65.1 |
| MsG0780041059.01.T01 | MTR_5g029320 | 36.937 | 111 | 64 | 2 | 50 | 157 | 77 | 184 | 7.97e-12 | 64.7 |
| MsG0780041059.01.T01 | MTR_2g101720 | 41.463 | 82 | 48 | 0 | 65 | 146 | 145 | 226 | 1.06e-11 | 64.3 |
| MsG0780041059.01.T01 | MTR_2g038625 | 38.235 | 102 | 61 | 1 | 48 | 149 | 70 | 169 | 1.70e-11 | 62.0 |
| MsG0780041059.01.T01 | MTR_2g038580 | 38.235 | 102 | 61 | 1 | 48 | 149 | 70 | 169 | 1.70e-11 | 62.0 |
| MsG0780041059.01.T01 | MTR_3g103590 | 39.535 | 86 | 51 | 1 | 49 | 134 | 133 | 217 | 2.25e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041059.01.T01 | AT5G03790 | 63.492 | 126 | 38 | 2 | 55 | 173 | 70 | 194 | 2.14e-44 | 149 |
| MsG0780041059.01.T01 | AT5G03790 | 75.269 | 93 | 23 | 0 | 55 | 147 | 70 | 162 | 1.92e-41 | 140 |
| MsG0780041059.01.T01 | AT2G36610 | 62.037 | 108 | 33 | 1 | 57 | 156 | 66 | 173 | 5.28e-39 | 134 |
| MsG0780041059.01.T01 | AT1G69780 | 46.528 | 144 | 66 | 3 | 55 | 187 | 78 | 221 | 9.33e-32 | 118 |
| MsG0780041059.01.T01 | AT5G65310 | 55.914 | 93 | 41 | 0 | 61 | 153 | 53 | 145 | 1.29e-28 | 109 |
| MsG0780041059.01.T01 | AT5G65310 | 55.914 | 93 | 41 | 0 | 61 | 153 | 71 | 163 | 1.44e-28 | 110 |
| MsG0780041059.01.T01 | AT2G22430 | 57.143 | 98 | 35 | 1 | 61 | 151 | 61 | 158 | 2.00e-28 | 109 |
| MsG0780041059.01.T01 | AT5G15150 | 53.846 | 104 | 46 | 1 | 50 | 151 | 101 | 204 | 2.79e-28 | 109 |
| MsG0780041059.01.T01 | AT3G01470 | 54.545 | 99 | 38 | 1 | 61 | 152 | 67 | 165 | 7.71e-28 | 107 |
| MsG0780041059.01.T01 | AT4G40060 | 45.588 | 136 | 58 | 3 | 32 | 151 | 20 | 155 | 9.68e-28 | 107 |
| MsG0780041059.01.T01 | AT3G01220 | 48.000 | 125 | 54 | 3 | 37 | 150 | 58 | 182 | 4.84e-26 | 102 |
| MsG0780041059.01.T01 | AT1G26960 | 50.000 | 108 | 47 | 1 | 50 | 150 | 59 | 166 | 7.42e-26 | 101 |
| MsG0780041059.01.T01 | AT4G36740 | 52.577 | 97 | 46 | 0 | 55 | 151 | 48 | 144 | 7.25e-25 | 98.2 |
| MsG0780041059.01.T01 | AT4G36740 | 52.577 | 97 | 46 | 0 | 55 | 151 | 49 | 145 | 7.26e-25 | 98.2 |
| MsG0780041059.01.T01 | AT2G46680 | 47.000 | 100 | 46 | 1 | 56 | 148 | 26 | 125 | 1.36e-24 | 98.6 |
| MsG0780041059.01.T01 | AT2G46680 | 45.283 | 106 | 51 | 1 | 56 | 154 | 26 | 131 | 1.11e-23 | 95.9 |
| MsG0780041059.01.T01 | AT2G18550 | 42.857 | 126 | 63 | 1 | 62 | 187 | 61 | 177 | 3.24e-23 | 94.0 |
| MsG0780041059.01.T01 | AT1G27045 | 48.624 | 109 | 47 | 2 | 62 | 163 | 68 | 174 | 1.51e-22 | 92.4 |
| MsG0780041059.01.T01 | AT1G27045 | 45.669 | 127 | 57 | 4 | 47 | 163 | 7 | 131 | 1.67e-22 | 90.9 |
| MsG0780041059.01.T01 | AT1G27045 | 45.669 | 127 | 57 | 4 | 47 | 163 | 7 | 131 | 1.67e-22 | 90.9 |
| MsG0780041059.01.T01 | AT3G61890 | 47.778 | 90 | 40 | 1 | 65 | 147 | 33 | 122 | 2.18e-22 | 92.0 |
| MsG0780041059.01.T01 | AT1G27045 | 48.624 | 109 | 47 | 2 | 62 | 163 | 17 | 123 | 2.42e-22 | 90.5 |
| MsG0780041059.01.T01 | AT5G66700 | 39.568 | 139 | 78 | 2 | 62 | 197 | 71 | 206 | 5.61e-21 | 88.2 |
| MsG0780041059.01.T01 | AT1G27045 | 40.650 | 123 | 56 | 2 | 62 | 177 | 68 | 180 | 6.33e-20 | 85.9 |
| MsG0780041059.01.T01 | AT5G53980 | 44.086 | 93 | 52 | 0 | 60 | 152 | 9 | 101 | 2.46e-18 | 79.3 |
| MsG0780041059.01.T01 | AT5G06710 | 43.564 | 101 | 57 | 0 | 48 | 148 | 176 | 276 | 4.95e-18 | 82.0 |
| MsG0780041059.01.T01 | AT4G16780 | 42.105 | 95 | 54 | 1 | 55 | 149 | 123 | 216 | 1.74e-16 | 77.0 |
| MsG0780041059.01.T01 | AT5G47370 | 41.489 | 94 | 55 | 0 | 55 | 148 | 123 | 216 | 1.86e-16 | 77.0 |
| MsG0780041059.01.T01 | AT2G22800 | 45.977 | 87 | 47 | 0 | 62 | 148 | 113 | 199 | 1.90e-16 | 76.6 |
| MsG0780041059.01.T01 | AT3G60390 | 41.053 | 95 | 56 | 0 | 55 | 149 | 155 | 249 | 7.84e-16 | 75.5 |
| MsG0780041059.01.T01 | AT2G01430 | 44.211 | 95 | 53 | 0 | 55 | 149 | 132 | 226 | 1.11e-15 | 74.7 |
| MsG0780041059.01.T01 | AT2G44910 | 43.182 | 88 | 50 | 0 | 62 | 149 | 163 | 250 | 1.56e-15 | 74.7 |
| MsG0780041059.01.T01 | AT4G37790 | 44.318 | 88 | 49 | 0 | 62 | 149 | 126 | 213 | 2.89e-15 | 73.6 |
| MsG0780041059.01.T01 | AT4G17460 | 39.000 | 100 | 61 | 0 | 50 | 149 | 123 | 222 | 5.99e-15 | 72.8 |
| MsG0780041059.01.T01 | AT1G79840 | 38.462 | 104 | 62 | 1 | 56 | 157 | 96 | 199 | 2.73e-14 | 72.0 |
| MsG0780041059.01.T01 | AT1G79840 | 38.462 | 104 | 62 | 1 | 56 | 157 | 38 | 141 | 2.88e-14 | 72.0 |
| MsG0780041059.01.T01 | AT1G79840 | 38.462 | 104 | 62 | 1 | 56 | 157 | 38 | 141 | 2.88e-14 | 72.0 |
| MsG0780041059.01.T01 | AT1G79840 | 38.462 | 104 | 62 | 1 | 56 | 157 | 125 | 228 | 2.92e-14 | 72.0 |
| MsG0780041059.01.T01 | AT1G79840 | 38.462 | 104 | 62 | 1 | 56 | 157 | 96 | 199 | 3.09e-14 | 71.6 |
| MsG0780041059.01.T01 | AT1G79840 | 38.462 | 104 | 62 | 1 | 56 | 157 | 96 | 199 | 4.54e-14 | 71.2 |
| MsG0780041059.01.T01 | AT1G73360 | 43.000 | 100 | 52 | 2 | 60 | 157 | 31 | 127 | 5.83e-13 | 68.2 |
| MsG0780041059.01.T01 | AT1G70920 | 37.607 | 117 | 70 | 1 | 36 | 149 | 10 | 126 | 1.75e-12 | 63.9 |
| MsG0780041059.01.T01 | AT1G70920 | 37.607 | 117 | 70 | 1 | 36 | 149 | 40 | 156 | 2.13e-12 | 64.3 |
| MsG0780041059.01.T01 | AT5G06710 | 48.485 | 66 | 34 | 0 | 48 | 113 | 176 | 241 | 3.48e-12 | 64.7 |
| MsG0780041059.01.T01 | AT3G61150 | 33.333 | 120 | 71 | 2 | 50 | 167 | 99 | 211 | 2.88e-11 | 63.2 |
| MsG0780041059.01.T01 | AT5G46880 | 39.773 | 88 | 53 | 0 | 60 | 147 | 112 | 199 | 3.00e-11 | 63.2 |
| MsG0780041059.01.T01 | AT5G46880 | 39.773 | 88 | 53 | 0 | 60 | 147 | 112 | 199 | 3.00e-11 | 63.2 |
| MsG0780041059.01.T01 | AT5G46880 | 39.773 | 88 | 53 | 0 | 60 | 147 | 112 | 199 | 3.00e-11 | 63.2 |
| MsG0780041059.01.T01 | AT1G17920 | 43.750 | 80 | 45 | 0 | 65 | 144 | 27 | 106 | 6.12e-11 | 62.0 |
| MsG0780041059.01.T01 | AT1G17920 | 43.750 | 80 | 45 | 0 | 65 | 144 | 27 | 106 | 6.12e-11 | 62.0 |
Find 47 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGCTTCATCTTCCTTTC+AGG | 0.091903 | 7:+85968494 | None:intergenic |
| TCCACCTTGTACGCCTATTT+TGG | 0.171135 | 7:+85968429 | None:intergenic |
| TTGCTGTTTGGTTCCAAAAT+AGG | 0.192526 | 7:-85968442 | MsG0780041059.01.T01:CDS |
| GATAATTAGGTACCTCTTCT+TGG | 0.238895 | 7:+85968330 | None:intergenic |
| GGTCTAACTTTATTTCTTCT+TGG | 0.251946 | 7:+85968516 | None:intergenic |
| TTTGGAACCAAACAGCAATT+TGG | 0.278055 | 7:+85968447 | None:intergenic |
| GTAGATTAGGGATAATAATT+AGG | 0.330622 | 7:+85967223 | None:intergenic |
| TTATTCAAATTTATTGTCAT+TGG | 0.345629 | 7:-85968702 | MsG0780041059.01.T01:CDS |
| TTGTTATTGTATCCCTGATC+TGG | 0.353848 | 7:+85967334 | None:intergenic |
| TTGGTGTATGCTGGAAAATT+AGG | 0.362252 | 7:-85968683 | MsG0780041059.01.T01:CDS |
| AAAGCTTCATCTTCCTTTCA+GGG | 0.372499 | 7:+85968495 | None:intergenic |
| AACCTCGCCAAATTGCTGTT+TGG | 0.376064 | 7:-85968454 | MsG0780041059.01.T01:CDS |
| TGTTGAATGCTACTATTTGT+TGG | 0.395823 | 7:+85967364 | None:intergenic |
| GGAAATGAGTCAACCGTCAT+TGG | 0.398063 | 7:-85968657 | MsG0780041059.01.T01:CDS |
| TCAACAAGCTGTTCCAGATC+AGG | 0.398083 | 7:-85967347 | MsG0780041059.01.T01:CDS |
| GGATAATAATTAGGCAATAC+AGG | 0.433929 | 7:+85967232 | None:intergenic |
| ATGAAGCTTTCAAGAGAGCT+AGG | 0.447660 | 7:-85968482 | MsG0780041059.01.T01:CDS |
| ATGGATGAAATGAACATTGA+TGG | 0.450308 | 7:-85968605 | MsG0780041059.01.T01:CDS |
| ACAGGCCAGTGACATTGATT+AGG | 0.461524 | 7:+85967250 | None:intergenic |
| AAGAAATGAAGGCAGAGAAA+TGG | 0.476885 | 7:-85968754 | None:intergenic |
| AAGTAACCAGATTGATTCAC+TGG | 0.476965 | 7:-85968549 | MsG0780041059.01.T01:CDS |
| TCTTCTCCAGTGAATCAATC+TGG | 0.478388 | 7:+85968543 | None:intergenic |
| AAACAGCAATTTGGCGAGGT+TGG | 0.478872 | 7:+85968456 | None:intergenic |
| GGTTCCAAAATAGGCGTACA+AGG | 0.492609 | 7:-85968433 | MsG0780041059.01.T01:CDS |
| ATGTTCATTTCATCCATAGC+TGG | 0.495881 | 7:+85968611 | None:intergenic |
| TTATTGTCATTGGTGTATGC+TGG | 0.507922 | 7:-85968692 | MsG0780041059.01.T01:CDS |
| GAAATGAGTCAACCGTCATT+GGG | 0.510295 | 7:-85968656 | MsG0780041059.01.T01:CDS |
| AGAATTTGATGTTGTCTCCA+AGG | 0.530430 | 7:-85968366 | MsG0780041059.01.T01:CDS |
| ACAAAGGTTACTTCCAGCTA+TGG | 0.541285 | 7:-85968624 | MsG0780041059.01.T01:CDS |
| CACACAGGTTATGAAGTTGA+AGG | 0.545029 | 7:-85967485 | MsG0780041059.01.T01:intron |
| GGAAAGCTAAAAGAGCAATC+AGG | 0.547065 | 7:-85967463 | MsG0780041059.01.T01:CDS |
| CAACAAGCTGTTCCAGATCA+GGG | 0.555767 | 7:-85967346 | MsG0780041059.01.T01:CDS |
| TGCCTCCTAATCAATGTCAC+TGG | 0.563013 | 7:-85967255 | MsG0780041059.01.T01:CDS |
| AAATAAAGTTAGACCCTGAA+AGG | 0.563460 | 7:-85968508 | MsG0780041059.01.T01:CDS |
| GGCCAGTGACATTGATTAGG+AGG | 0.565142 | 7:+85967253 | None:intergenic |
| ACAGTAGAAAGCACATCAGA+AGG | 0.569739 | 7:-85967406 | MsG0780041059.01.T01:CDS |
| TGAAGCTTTCAAGAGAGCTA+GGG | 0.584376 | 7:-85968481 | MsG0780041059.01.T01:CDS |
| ACACAGGTTATGAAGTTGAA+GGG | 0.593093 | 7:-85967484 | MsG0780041059.01.T01:intron |
| GAGAAATGGTATGAATATGA+TGG | 0.596753 | 7:-85968740 | MsG0780041059.01.T01:CDS |
| GTATGCTGGAAAATTAGGAA+TGG | 0.598596 | 7:-85968678 | MsG0780041059.01.T01:CDS |
| TGTTGTGTCTCACCCAATGA+CGG | 0.608704 | 7:+85968644 | None:intergenic |
| AAATAGGCGTACAAGGTGGA+AGG | 0.609407 | 7:-85968426 | MsG0780041059.01.T01:CDS |
| AAAACAGAAACTCCAAGAAG+AGG | 0.620624 | 7:-85968342 | MsG0780041059.01.T01:intron |
| AACCAAACAGCAATTTGGCG+AGG | 0.655043 | 7:+85968452 | None:intergenic |
| TCCAAAATAGGCGTACAAGG+TGG | 0.664815 | 7:-85968430 | MsG0780041059.01.T01:CDS |
| AAGCTAAAAGAGCAATCAGG+TGG | 0.690901 | 7:-85967460 | MsG0780041059.01.T01:CDS |
| CATTGGGTGAGACACAACAA+AGG | 0.711095 | 7:-85968640 | MsG0780041059.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTGTATAAAAAATTAATTA+TGG | - | Chr7:85968400-85968419 | MsG0780041059.01.T01:CDS | 10.0% |
| !! | TAAAAAATTAATTATGGACA+TGG | - | Chr7:85968406-85968425 | MsG0780041059.01.T01:CDS | 15.0% |
| !! | TTATTCAAATTTATTGTCAT+TGG | - | Chr7:85967275-85967294 | MsG0780041059.01.T01:CDS | 15.0% |
| !!! | ATAATTCAACTTCTTTTTAT+AGG | + | Chr7:85967814-85967833 | None:intergenic | 15.0% |
| !!! | GAAAAATAGTAATTTTTGTA+AGG | + | Chr7:85968275-85968294 | None:intergenic | 15.0% |
| !! | AATAATACAACTCTAACAAA+TGG | + | Chr7:85968126-85968145 | None:intergenic | 20.0% |
| !! | CAAAAAATCCAAAGATAATT+AGG | + | Chr7:85967663-85967682 | None:intergenic | 20.0% |
| !! | TATAATGTAGAATATGTGTA+AGG | + | Chr7:85968311-85968330 | None:intergenic | 20.0% |
| !!! | AATTCAACTTTTTTCCTAAT+AGG | - | Chr7:85967919-85967938 | MsG0780041059.01.T01:intron | 20.0% |
| !!! | TATCTTTGGATTTTTTGTAT+AGG | - | Chr7:85967666-85967685 | MsG0780041059.01.T01:intron | 20.0% |
| !!! | TTATGTGCTTTTTTCTATTT+CGG | - | Chr7:85968371-85968390 | MsG0780041059.01.T01:CDS | 20.0% |
| ! | TAAAAATCACATAATGCAAG+AGG | + | Chr7:85967789-85967808 | None:intergenic | 25.0% |
| ! | TACATAAATCAACCATTGTA+GGG | + | Chr7:85968452-85968471 | None:intergenic | 25.0% |
| !!! | TATGTGCTTTTTTCTATTTC+GGG | - | Chr7:85968372-85968391 | MsG0780041059.01.T01:CDS | 25.0% |
| AAATAAAGTTAGACCCTGAA+AGG | - | Chr7:85967469-85967488 | MsG0780041059.01.T01:CDS | 30.0% | |
| ATGGATGAAATGAACATTGA+TGG | - | Chr7:85967372-85967391 | MsG0780041059.01.T01:CDS | 30.0% | |
| CCTCAAACTTGAAATGTAAT+AGG | + | Chr7:85968008-85968027 | None:intergenic | 30.0% | |
| CTACATAAATCAACCATTGT+AGG | + | Chr7:85968453-85968472 | None:intergenic | 30.0% | |
| GAGAAATGGTATGAATATGA+TGG | - | Chr7:85967237-85967256 | MsG0780041059.01.T01:CDS | 30.0% | |
| GGATAATAATTAGGCAATAC+AGG | + | Chr7:85968748-85968767 | None:intergenic | 30.0% | |
| TGTTGAATGCTACTATTTGT+TGG | + | Chr7:85968616-85968635 | None:intergenic | 30.0% | |
| ! | GGTCTAACTTTATTTCTTCT+TGG | + | Chr7:85967464-85967483 | None:intergenic | 30.0% |
| !! | AAGAGGTACCTAATTATCTT+TGG | - | Chr7:85967652-85967671 | MsG0780041059.01.T01:intron | 30.0% |
| !! | CCTATTACATTTCAAGTTTG+AGG | - | Chr7:85968005-85968024 | MsG0780041059.01.T01:intron | 30.0% |
| !!! | ATGTGCTTTTTTCTATTTCG+GGG | - | Chr7:85968373-85968392 | MsG0780041059.01.T01:CDS | 30.0% |
| !!! | TTGGATTTTTTGTATAGGCT+AGG | - | Chr7:85967671-85967690 | MsG0780041059.01.T01:intron | 30.0% |
| AAAACAGAAACTCCAAGAAG+AGG | - | Chr7:85967635-85967654 | MsG0780041059.01.T01:intron | 35.0% | |
| AAAGCTTCATCTTCCTTTCA+GGG | + | Chr7:85967485-85967504 | None:intergenic | 35.0% | |
| AAATCAGACTTACGCCTATT+AGG | + | Chr7:85967936-85967955 | None:intergenic | 35.0% | |
| AACCATTGTAGGGTAATACT+AGG | + | Chr7:85968442-85968461 | None:intergenic | 35.0% | |
| AACCTAGTATTACCCTACAA+TGG | - | Chr7:85968437-85968456 | MsG0780041059.01.T01:CDS | 35.0% | |
| ACACAGGTTATGAAGTTGAA+GGG | - | Chr7:85968493-85968512 | MsG0780041059.01.T01:CDS | 35.0% | |
| AGAATTTGATGTTGTCTCCA+AGG | - | Chr7:85967611-85967630 | MsG0780041059.01.T01:intron | 35.0% | |
| ATAGGTCTCTAAGCTTCTAA+AGG | + | Chr7:85967990-85968009 | None:intergenic | 35.0% | |
| ATGTTCATTTCATCCATAGC+TGG | + | Chr7:85967369-85967388 | None:intergenic | 35.0% | |
| GATAATTAGGTACCTCTTCT+TGG | + | Chr7:85967650-85967669 | None:intergenic | 35.0% | |
| GTATGCTGGAAAATTAGGAA+TGG | - | Chr7:85967299-85967318 | MsG0780041059.01.T01:CDS | 35.0% | |
| TTATTGTCATTGGTGTATGC+TGG | - | Chr7:85967285-85967304 | MsG0780041059.01.T01:CDS | 35.0% | |
| TTGGTGTATGCTGGAAAATT+AGG | - | Chr7:85967294-85967313 | MsG0780041059.01.T01:CDS | 35.0% | |
| ! | AAGTAACCAGATTGATTCAC+TGG | - | Chr7:85967428-85967447 | MsG0780041059.01.T01:CDS | 35.0% |
| ! | AGCAATCAGGTGGTAATTTT+AGG | - | Chr7:85968527-85968546 | MsG0780041059.01.T01:CDS | 35.0% |
| ! | ATAATGCAAGAGGTACATGA+AGG | + | Chr7:85967779-85967798 | None:intergenic | 35.0% |
| ! | TAATGCAAGAGGTACATGAA+GGG | + | Chr7:85967778-85967797 | None:intergenic | 35.0% |
| ! | TTGTTATTGTATCCCTGATC+TGG | + | Chr7:85968646-85968665 | None:intergenic | 35.0% |
| ! | TTTGGAACCAAACAGCAATT+TGG | + | Chr7:85967533-85967552 | None:intergenic | 35.0% |
| !! | TTGCTGTTTGGTTCCAAAAT+AGG | - | Chr7:85967535-85967554 | MsG0780041059.01.T01:intron | 35.0% |
| !! | TTGGAGTTTCTGTTTTTCCT+TGG | + | Chr7:85967631-85967650 | None:intergenic | 35.0% |
| AAGCTAAAAGAGCAATCAGG+TGG | - | Chr7:85968517-85968536 | MsG0780041059.01.T01:CDS | 40.0% | |
| ACAAAGGTTACTTCCAGCTA+TGG | - | Chr7:85967353-85967372 | MsG0780041059.01.T01:CDS | 40.0% | |
| ATGAAGCTTTCAAGAGAGCT+AGG | - | Chr7:85967495-85967514 | MsG0780041059.01.T01:intron | 40.0% | |
| CACACAGGTTATGAAGTTGA+AGG | - | Chr7:85968492-85968511 | MsG0780041059.01.T01:CDS | 40.0% | |
| GAAAGCTTCATCTTCCTTTC+AGG | + | Chr7:85967486-85967505 | None:intergenic | 40.0% | |
| GAAATGAGTCAACCGTCATT+GGG | - | Chr7:85967321-85967340 | MsG0780041059.01.T01:CDS | 40.0% | |
| GGAAAGCTAAAAGAGCAATC+AGG | - | Chr7:85968514-85968533 | MsG0780041059.01.T01:CDS | 40.0% | |
| TCTTCTCCAGTGAATCAATC+TGG | + | Chr7:85967437-85967456 | None:intergenic | 40.0% | |
| TGAAGCTTTCAAGAGAGCTA+GGG | - | Chr7:85967496-85967515 | MsG0780041059.01.T01:intron | 40.0% | |
| ! | ACAGTAGAAAGCACATCAGA+AGG | - | Chr7:85968571-85968590 | MsG0780041059.01.T01:CDS | 40.0% |
| AAACAGCAATTTGGCGAGGT+TGG | + | Chr7:85967524-85967543 | None:intergenic | 45.0% | |
| AAATAGGCGTACAAGGTGGA+AGG | - | Chr7:85967551-85967570 | MsG0780041059.01.T01:intron | 45.0% | |
| AACCAAACAGCAATTTGGCG+AGG | + | Chr7:85967528-85967547 | None:intergenic | 45.0% | |
| CAACAAGCTGTTCCAGATCA+GGG | - | Chr7:85968631-85968650 | MsG0780041059.01.T01:CDS | 45.0% | |
| CATTGGGTGAGACACAACAA+AGG | - | Chr7:85967337-85967356 | MsG0780041059.01.T01:CDS | 45.0% | |
| GGAAATGAGTCAACCGTCAT+TGG | - | Chr7:85967320-85967339 | MsG0780041059.01.T01:CDS | 45.0% | |
| GGTTCCAAAATAGGCGTACA+AGG | - | Chr7:85967544-85967563 | MsG0780041059.01.T01:intron | 45.0% | |
| TCAACAAGCTGTTCCAGATC+AGG | - | Chr7:85968630-85968649 | MsG0780041059.01.T01:CDS | 45.0% | |
| TCCAAAATAGGCGTACAAGG+TGG | - | Chr7:85967547-85967566 | MsG0780041059.01.T01:intron | 45.0% | |
| TGCCTCCTAATCAATGTCAC+TGG | - | Chr7:85968722-85968741 | MsG0780041059.01.T01:CDS | 45.0% | |
| TGTTGTGTCTCACCCAATGA+CGG | + | Chr7:85967336-85967355 | None:intergenic | 45.0% | |
| ! | AACCTCGCCAAATTGCTGTT+TGG | - | Chr7:85967523-85967542 | MsG0780041059.01.T01:intron | 45.0% |
| ! | ACAGGCCAGTGACATTGATT+AGG | + | Chr7:85968730-85968749 | None:intergenic | 45.0% |
| ! | TCAATGTGCTCTGAACACAC+AGG | - | Chr7:85968477-85968496 | MsG0780041059.01.T01:CDS | 45.0% |
| ! | TCCACCTTGTACGCCTATTT+TGG | + | Chr7:85967551-85967570 | None:intergenic | 45.0% |
| !!! | AATTTTATGTTTTTTTTTTT+CGG | + | Chr7:85967853-85967872 | None:intergenic | 5.0% |
| !!! | ATATTTATTTTTTACTTTTT+TGG | + | Chr7:85968064-85968083 | None:intergenic | 5.0% |
| ! | GGCCAGTGACATTGATTAGG+AGG | + | Chr7:85968727-85968746 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 85967228 | 85968771 | 85967228 | ID=MsG0780041059.01;Name=MsG0780041059.01 |
| Chr7 | mRNA | 85967228 | 85968771 | 85967228 | ID=MsG0780041059.01.T01;Parent=MsG0780041059.01;Name=MsG0780041059.01.T01;_AED=0.43;_eAED=0.45;_QI=0|0|0|1|1|1|2|0|233 |
| Chr7 | exon | 85968343 | 85968771 | 85968343 | ID=MsG0780041059.01.T01:exon:19454;Parent=MsG0780041059.01.T01 |
| Chr7 | exon | 85967228 | 85967500 | 85967228 | ID=MsG0780041059.01.T01:exon:19453;Parent=MsG0780041059.01.T01 |
| Chr7 | CDS | 85968343 | 85968771 | 85968343 | ID=MsG0780041059.01.T01:cds;Parent=MsG0780041059.01.T01 |
| Chr7 | CDS | 85967228 | 85967500 | 85967228 | ID=MsG0780041059.01.T01:cds;Parent=MsG0780041059.01.T01 |
| Gene Sequence |
| Protein sequence |
