AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021060.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021060.01.T01 MTR_4g065040 72.912 491 63 7 1 422 1 490 0.0 630
MsG0480021060.01.T01 MTR_2g097950 55.850 453 159 9 3 419 19 466 2.65e-168 481
MsG0480021060.01.T01 MTR_2g097950 52.881 486 157 11 3 419 19 501 1.36e-165 475
MsG0480021060.01.T01 MTR_8g076480 44.211 475 194 5 9 413 13 486 1.90e-140 410
MsG0480021060.01.T01 MTR_8g094600 38.462 468 221 5 9 410 73 539 1.77e-101 312
MsG0480021060.01.T01 MTR_1g029840 38.166 469 221 7 9 410 20 486 3.88e-100 307
MsG0480021060.01.T01 MTR_1g029840 48.185 303 151 3 110 410 188 486 8.39e-98 301
MsG0480021060.01.T01 MTR_3g088150 48.185 303 151 3 110 410 190 488 2.97e-93 290
MsG0480021060.01.T01 MTR_1314s0010 37.548 261 143 6 120 369 85 336 4.52e-46 162
MsG0480021060.01.T01 MTR_1222s0010 30.400 375 181 9 9 312 9 374 1.25e-40 154
MsG0480021060.01.T01 MTR_2g067660 27.419 310 197 8 74 363 207 508 3.92e-23 102
MsG0480021060.01.T01 MTR_4g106510 28.309 272 178 7 120 383 238 500 4.57e-23 101
MsG0480021060.01.T01 MTR_3g078490 29.044 272 176 7 120 383 268 530 1.32e-22 100
MsG0480021060.01.T01 MTR_3g078550 27.941 272 179 7 120 383 208 470 4.06e-21 95.5
MsG0480021060.01.T01 MTR_3g078550 27.941 272 179 7 120 383 238 500 4.15e-21 95.9
MsG0480021060.01.T01 MTR_4g020710 58.571 70 29 0 224 293 16 85 3.10e-20 86.7
MsG0480021060.01.T01 MTR_8g083530 26.398 322 202 9 73 370 184 494 4.98e-20 92.4
MsG0480021060.01.T01 MTR_4g020720 39.041 146 71 6 49 190 70 201 9.35e-20 89.0
MsG0480021060.01.T01 MTR_2g034160 29.796 245 158 7 120 356 276 514 1.06e-19 92.0
MsG0480021060.01.T01 MTR_6g086300 28.958 259 165 7 120 370 246 493 2.58e-19 90.5
MsG0480021060.01.T01 MTR_6g086300 28.958 259 165 7 120 370 246 493 2.58e-19 90.5
MsG0480021060.01.T01 MTR_8g064170 27.105 380 217 14 38 370 134 500 2.38e-18 87.4
MsG0480021060.01.T01 MTR_4g107040 28.571 322 193 13 75 370 225 535 3.12e-18 87.4
MsG0480021060.01.T01 MTR_3g078170 28.235 255 172 7 120 370 286 533 7.69e-18 85.9
MsG0480021060.01.T01 MTR_8g064170 29.260 311 185 13 84 370 233 532 2.04e-17 84.7
MsG0480021060.01.T01 MTR_4g131180 30.909 220 139 7 136 352 258 467 2.94e-16 80.9
MsG0480021060.01.T01 MTR_8g083520 24.013 304 197 9 74 370 96 372 1.06e-14 75.5
MsG0480021060.01.T01 MTR_8g083520 24.013 304 197 9 74 370 176 452 1.40e-14 75.9
MsG0480021060.01.T01 MTR_4g131180 30.332 211 134 7 136 343 258 458 5.61e-14 73.9
MsG0480021060.01.T01 MTR_6g086340 28.862 246 154 9 120 356 244 477 6.70e-14 73.9
MsG0480021060.01.T01 MTR_1g014320 27.727 220 146 7 136 352 258 467 2.10e-13 72.4
MsG0480021060.01.T01 MTR_2g042330 25.385 260 180 7 120 376 245 493 1.20e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021060.01.T01 AT4G36250 41.176 476 210 4 7 413 10 484 1.84e-132 390
MsG0480021060.01.T01 AT4G34240 38.723 470 221 5 12 415 82 550 3.52e-106 325
MsG0480021060.01.T01 AT4G34240 38.723 470 221 5 12 415 67 535 3.54e-106 324
MsG0480021060.01.T01 AT1G44170 50.000 304 146 3 110 411 121 420 1.47e-102 311
MsG0480021060.01.T01 AT1G44170 50.000 304 146 3 110 411 184 483 7.29e-102 311
MsG0480021060.01.T01 AT1G44170 50.000 304 146 3 110 411 184 483 7.29e-102 311
MsG0480021060.01.T01 AT4G34240 46.965 313 160 3 105 415 100 408 4.29e-92 284
MsG0480021060.01.T01 AT4G34240 33.657 309 139 4 12 254 82 390 6.48e-45 160
MsG0480021060.01.T01 AT1G79440 29.960 247 163 6 120 363 275 514 3.43e-25 108
MsG0480021060.01.T01 AT1G74920 29.889 271 175 8 120 383 233 495 7.02e-24 103
MsG0480021060.01.T01 AT1G74920 29.889 271 175 8 120 383 238 500 7.85e-24 103
MsG0480021060.01.T01 AT3G66658 28.125 288 188 8 120 394 276 557 1.03e-21 98.2
MsG0480021060.01.T01 AT3G66658 28.897 263 173 7 120 374 276 532 2.03e-21 97.1
MsG0480021060.01.T01 AT3G48170 27.473 273 179 8 120 383 238 500 4.11e-21 95.9
MsG0480021060.01.T01 AT3G48000 28.627 255 171 7 120 370 282 529 1.62e-18 88.2
MsG0480021060.01.T01 AT1G23800 26.146 371 230 11 36 370 163 525 1.72e-18 88.2
MsG0480021060.01.T01 AT3G24503 26.641 259 171 8 120 370 245 492 1.73e-15 78.6
MsG0480021060.01.T01 AT2G24270 29.091 220 143 7 136 352 298 507 3.01e-15 78.2
MsG0480021060.01.T01 AT2G24270 28.151 238 158 7 136 370 258 485 4.85e-15 77.4
MsG0480021060.01.T01 AT2G24270 28.151 238 158 7 136 370 258 485 4.85e-15 77.4
MsG0480021060.01.T01 AT2G24270 28.151 238 158 7 136 370 258 485 5.30e-15 77.4
MsG0480021060.01.T01 AT1G54100 26.336 262 175 7 120 376 244 492 8.09e-14 73.6
MsG0480021060.01.T01 AT1G54100 26.336 262 175 7 120 376 244 492 8.09e-14 73.6

Find 106 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTATAATTATGATTATT+TGG 0.060046 4:+52802187 MsG0480021060.01.T01:CDS
CCTCTTTGGAATTAATATTT+TGG 0.147620 4:-52796850 None:intergenic
ACACTTTAATGCGAGATTTA+AGG 0.163652 4:-52799639 None:intergenic
TGGACTCACTTTCATCTTCT+TGG 0.177885 4:+52800582 MsG0480021060.01.T01:CDS
ATGGCCCTCATGCAAGATTT+AGG 0.178064 4:+52797021 MsG0480021060.01.T01:CDS
GGATTGGTCCTTGTTATTCT+TGG 0.192443 4:+52802209 MsG0480021060.01.T01:CDS
CGGATTCTTGTGGGAAAATA+TGG 0.217738 4:+52801011 MsG0480021060.01.T01:CDS
TAAAATTTCTTATTATATAA+AGG 0.222774 4:-52802416 None:intergenic
GTTAAAGAATCTGTGGTTTA+TGG 0.236418 4:+52801322 MsG0480021060.01.T01:CDS
TGGAGAGAATCACAACTAAA+AGG 0.259745 4:+52796958 MsG0480021060.01.T01:CDS
CCAAAGAGGTATCAAAATAA+TGG 0.272297 4:+52796864 MsG0480021060.01.T01:exon
AAAGAGTTGCTGTTCAAAAT+TGG 0.272793 4:+52801082 MsG0480021060.01.T01:CDS
ATGAAACTTACAGTAATAAT+TGG 0.278416 4:-52801538 None:intergenic
TTCATCTTCTTGGGATTTAG+AGG 0.286545 4:+52800592 MsG0480021060.01.T01:CDS
CCACCCAACTCCAGTGTTAC+AGG 0.297157 4:-52800542 None:intergenic
GGAGTAGGTGGAAGTGGATT+TGG 0.307069 4:+52802035 MsG0480021060.01.T01:CDS
TCTTATAATTATGATTATTT+GGG 0.326416 4:+52802188 MsG0480021060.01.T01:CDS
TGGCCCTCATGCAAGATTTA+GGG 0.327127 4:+52797022 MsG0480021060.01.T01:CDS
GGACTCACTTTCATCTTCTT+GGG 0.339156 4:+52800583 MsG0480021060.01.T01:CDS
TGAGTTTGCAACTCTTATAT+AGG 0.362355 4:+52802329 MsG0480021060.01.T01:three_prime_UTR
AAATAGAGGCTTTGTACATT+AGG 0.375102 4:-52802460 None:intergenic
TCATCTTGGAATTTGCCCTT+TGG 0.381304 4:+52799844 MsG0480021060.01.T01:CDS
CTTGAAAGCAATGCTATTGC+AGG 0.388263 4:-52799778 None:intergenic
CATTAAAGTGTCTGAAAGAT+TGG 0.391877 4:+52799651 MsG0480021060.01.T01:CDS
CAGTAATAATTGGAAGTAAT+GGG 0.392841 4:-52801528 None:intergenic
CAAAGAGGTATCAAAATAAT+GGG 0.394252 4:+52796865 MsG0480021060.01.T01:exon
ACAGTAATAATTGGAAGTAA+TGG 0.412012 4:-52801529 None:intergenic
ATTTATTGAGCCAACAATCT+TGG 0.414711 4:+52801459 MsG0480021060.01.T01:CDS
GCACCTGACCCCTGTAACAC+TGG 0.415048 4:+52800532 MsG0480021060.01.T01:CDS
CTATAGTGTTGGAATGTTGT+GGG 0.417700 4:-52801240 None:intergenic
TATCAAAATAATGGGAACTT+TGG 0.423131 4:+52796873 MsG0480021060.01.T01:exon
TCATTCTGTTCTGCAATGCT+TGG 0.424661 4:-52801843 None:intergenic
TAATTATGATTATTTGGGAT+TGG 0.431846 4:+52802193 MsG0480021060.01.T01:CDS
GAAAGTGAGTCCACAACTGC+AGG 0.443232 4:-52800572 None:intergenic
GTGTGGATCAAGAAAATGTT+TGG 0.443390 4:+52801211 MsG0480021060.01.T01:CDS
AGAAATTGTTCATGAGCCTC+TGG 0.445976 4:+52799804 MsG0480021060.01.T01:CDS
GAAACTTCTTGATGATCAAA+GGG 0.446465 4:+52801300 MsG0480021060.01.T01:CDS
TTAACTAACAAGGCAAGATC+TGG 0.446747 4:-52802253 None:intergenic
ATTGATCGGTTCGAAAATAG+AGG 0.447851 4:-52802474 None:intergenic
TCCCACAAGAATCCGCTTCA+CGG 0.447941 4:-52801003 None:intergenic
AGAAACTTCTTGATGATCAA+AGG 0.450473 4:+52801299 MsG0480021060.01.T01:CDS
ACATAAAGGGCAAGAGGCTT+AGG 0.452071 4:-52801808 None:intergenic
AAAAGAGAATGATATATTCA+TGG 0.458500 4:+52797002 MsG0480021060.01.T01:CDS
TCGTTCTCATTATTTCATCT+TGG 0.461385 4:+52799830 MsG0480021060.01.T01:CDS
GCAGCAGATAGTCTACCATT+TGG 0.464351 4:+52802011 MsG0480021060.01.T01:CDS
ACCCCTGTAACACTGGAGTT+GGG 0.465154 4:+52800539 MsG0480021060.01.T01:CDS
TTTGGAGGAGTAGGTGGAAG+TGG 0.473180 4:+52802029 MsG0480021060.01.T01:CDS
TGGAAAATGCCCTGCAGTTG+TGG 0.478847 4:+52800562 MsG0480021060.01.T01:CDS
TGCCTTGTTAGTTAATTAGC+GGG 0.481989 4:+52802261 MsG0480021060.01.T01:exon
TTATAAGGTGGAATTGATGA+AGG 0.484071 4:+52801189 MsG0480021060.01.T01:intron
CACCCAACTCCAGTGTTACA+GGG 0.484632 4:-52800541 None:intergenic
TTTGCAGGTGGAAAAGATTG+AGG 0.485285 4:+52801759 MsG0480021060.01.T01:intron
GCTATAGTGTTGGAATGTTG+TGG 0.485996 4:-52801241 None:intergenic
AACTATCCTTGCTATAGTGT+TGG 0.490148 4:-52801251 None:intergenic
AGTCTACCATTTGGAGGAGT+AGG 0.493102 4:+52802020 MsG0480021060.01.T01:CDS
ATGATATCTGAAACATCATC+TGG 0.495766 4:+52801862 MsG0480021060.01.T01:CDS
ACTCCAGTGTTACAGGGGTC+AGG 0.499908 4:-52800535 None:intergenic
AGCAATGCTATTGCAGGTAG+TGG 0.500402 4:-52799772 None:intergenic
TGAAACTTATTTGCAGTCCA+TGG 0.501038 4:-52802152 None:intergenic
GGAGAGAATCACAACTAAAA+GGG 0.502833 4:+52796959 MsG0480021060.01.T01:CDS
TATTGAGCCAACAATCTTGG+TGG 0.503945 4:+52801462 MsG0480021060.01.T01:CDS
ACATTATTGCTGCATCAAGT+GGG 0.515989 4:-52801489 None:intergenic
GCCGTGAAGCGGATTCTTGT+GGG 0.520458 4:+52801002 MsG0480021060.01.T01:CDS
AACATTATTGCTGCATCAAG+TGG 0.523734 4:-52801490 None:intergenic
GGAAAATATGGAACTTGTGC+TGG 0.526806 4:+52801023 MsG0480021060.01.T01:CDS
TTGCCTTGTTAGTTAATTAG+CGG 0.527728 4:+52802260 MsG0480021060.01.T01:exon
GGCCGTGAAGCGGATTCTTG+TGG 0.532962 4:+52801001 MsG0480021060.01.T01:CDS
GTTTCCCTAAATCTTGCATG+AGG 0.549833 4:-52797026 None:intergenic
AATAATGGGAACTTTGGAGA+TGG 0.556684 4:+52796879 MsG0480021060.01.T01:exon
GTGGATTTGGCATGTACCAT+GGG 0.562857 4:+52802048 MsG0480021060.01.T01:CDS
CTTCCACCTACTCCTCCAAA+TGG 0.564341 4:-52802026 None:intergenic
GACCCCTGTAACACTGGAGT+TGG 0.566126 4:+52800538 MsG0480021060.01.T01:CDS
CCAAAATATTAATTCCAAAG+AGG 0.566584 4:+52796850 MsG0480021060.01.T01:five_prime_UTR
AAATAAGTTTCAACTACTTG+AGG 0.566706 4:+52802163 MsG0480021060.01.T01:CDS
GTATTGAATTCATAAGCTCT+AGG 0.568775 4:+52801785 MsG0480021060.01.T01:CDS
CTACCATTTGGAGGAGTAGG+TGG 0.572073 4:+52802023 MsG0480021060.01.T01:CDS
AAAGAAAACTAATCATTGAT+CGG 0.573248 4:-52802488 None:intergenic
GCAGATAGTCTACCATTTGG+AGG 0.579701 4:+52802014 MsG0480021060.01.T01:CDS
AAAGAATCTGTGGTTTATGG+TGG 0.584820 4:+52801325 MsG0480021060.01.T01:CDS
TTGGTGACTGAATGTGTCAA+AGG 0.587692 4:-52802078 None:intergenic
GTGAATACATAAAGGGCAAG+AGG 0.593136 4:-52801814 None:intergenic
AGATTGGATGTCAAGCAAGA+AGG 0.596883 4:+52799667 MsG0480021060.01.T01:CDS
AATATCAGGTAGTGCACGAG+TGG 0.599899 4:+52800481 MsG0480021060.01.T01:intron
CATTATTGCTGCATCAAGTG+GGG 0.601518 4:-52801488 None:intergenic
AGGGTTGCGTCGTTTCCTAG+TGG 0.601929 4:+52796978 MsG0480021060.01.T01:CDS
ATTATAAGGTGGCCGTGAAG+CGG 0.604767 4:+52800991 MsG0480021060.01.T01:intron
GAAATTGTTCATGAGCCTCT+GGG 0.609785 4:+52799805 MsG0480021060.01.T01:CDS
TCAAAGGGTTAAAGAATCTG+TGG 0.611910 4:+52801315 MsG0480021060.01.T01:CDS
AGGTGGAATTGATGAAGGTG+TGG 0.618298 4:+52801194 MsG0480021060.01.T01:intron
CACCCGCTAATTAACTAACA+AGG 0.618800 4:-52802263 None:intergenic
CCTGTAACACTGGAGTTGGG+TGG 0.622351 4:+52800542 MsG0480021060.01.T01:CDS
ATATCAGGTAGTGCACGAGT+GGG 0.622510 4:+52800482 MsG0480021060.01.T01:intron
AACATTCCAACACTATAGCA+AGG 0.624404 4:+52801245 MsG0480021060.01.T01:CDS
AACTTATTTGCAGTCCATGG+TGG 0.626124 4:-52802149 None:intergenic
AGCAATTGACTATGTCATTG+TGG 0.626758 4:+52801058 MsG0480021060.01.T01:CDS
TTTCCCTAAATCTTGCATGA+GGG 0.634134 4:-52797025 None:intergenic
AGTGGATTTGGCATGTACCA+TGG 0.640616 4:+52802047 MsG0480021060.01.T01:CDS
AAAGTGAGTCCACAACTGCA+GGG 0.644119 4:-52800571 None:intergenic
ATTATTGCTGCATCAAGTGG+GGG 0.663599 4:-52801487 None:intergenic
TTTGGTATAGATATCCACCA+TGG 0.672421 4:+52802135 MsG0480021060.01.T01:CDS
TATCAGGTAGTGCACGAGTG+GGG 0.672922 4:+52800483 MsG0480021060.01.T01:intron
CGTCTCTAAAAGCTTCAAGA+CGG 0.673616 4:-52797050 None:intergenic
ACCCAACTCCAGTGTTACAG+GGG 0.674549 4:-52800540 None:intergenic
TCTTTAATCCAAGAATAACA+AGG 0.695515 4:-52802217 None:intergenic
TGTCAAAGGAGAATTTCCCA+TGG 0.698053 4:-52802064 None:intergenic
ATAATGAGAACGACACCCAG+AGG 0.731880 4:-52799820 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTTAGTAATAAATGT+TGG + Chr4:52799025-52799044 MsG0480021060.01.T01:intron 10.0%
!! TATTATTATATTCATATATC+CGG + Chr4:52799359-52799378 MsG0480021060.01.T01:intron 10.0%
!! TCTTATAATTATGATTATTT+GGG + Chr4:52802188-52802207 MsG0480021060.01.T01:CDS 10.0%
!! TGAACATTAATAATATAAAT+TGG - Chr4:52801951-52801970 None:intergenic 10.0%
!!! AAAGTTAAATCATTTTTTTA+AGG + Chr4:52798570-52798589 MsG0480021060.01.T01:intron 10.0%
!!! AATTTATTTATTTTTTGGTA+AGG + Chr4:52797146-52797165 MsG0480021060.01.T01:intron 10.0%
!!! TTTATTTTATTTTTATAAGG+TGG + Chr4:52801177-52801196 MsG0480021060.01.T01:intron 10.0%
!! AATAAATTAGAGATAAACAA+AGG - Chr4:52797723-52797742 None:intergenic 15.0%
!! ATAAATAAATAAACTAAGGA+AGG - Chr4:52801722-52801741 None:intergenic 15.0%
!! CAAAAAATAAATAAATTCCT+TGG - Chr4:52797143-52797162 None:intergenic 15.0%
!! CTCTTATAATTATGATTATT+TGG + Chr4:52802187-52802206 MsG0480021060.01.T01:CDS 15.0%
!! GAAATAATTTACTTTGATAT+AGG + Chr4:52799747-52799766 MsG0480021060.01.T01:intron 15.0%
!! GTATATTTCCTAAAAATAAA+CGG + Chr4:52798909-52798928 MsG0480021060.01.T01:intron 15.0%
!! TAAAATTTAAACATCACAAA+TGG - Chr4:52798142-52798161 None:intergenic 15.0%
!! TAAATAAATAAACTAAGGAA+GGG - Chr4:52801721-52801740 None:intergenic 15.0%
!! TTAATTAAATTCAAGTATTC+AGG + Chr4:52801113-52801132 MsG0480021060.01.T01:intron 15.0%
!!! ATCATTTCTCAAATTTTATT+TGG - Chr4:52798279-52798298 None:intergenic 15.0%
!!! CAAGGAATTTATTTATTTTT+TGG + Chr4:52797141-52797160 MsG0480021060.01.T01:intron 15.0%
!!! GAAAAGTTAAATCATTTTTA+AGG + Chr4:52798941-52798960 MsG0480021060.01.T01:intron 15.0%
!!! TATTTTTCTTAACTTTTTCA+TGG - Chr4:52797455-52797474 None:intergenic 15.0%
!!! TCATTTCTCAAATTTTATTT+GGG - Chr4:52798278-52798297 None:intergenic 15.0%
!!! TGTTGTTATTTTTTAGTAAT+AGG - Chr4:52801410-52801429 None:intergenic 15.0%
!!! TTTTATTAATGGTTACTTTA+TGG - Chr4:52797290-52797309 None:intergenic 15.0%
!! AAAAGAGAATGATATATTCA+TGG + Chr4:52797002-52797021 MsG0480021060.01.T01:CDS 20.0%
!! AAAGAAAACTAATCATTGAT+CGG - Chr4:52802491-52802510 None:intergenic 20.0%
!! AAATAAGATATATAACAGCA+TGG + Chr4:52797237-52797256 MsG0480021060.01.T01:intron 20.0%
!! AAATATATAGTAAAACGTGA+TGG - Chr4:52800802-52800821 None:intergenic 20.0%
!! AATAAATAAATTCCTTGGAT+TGG - Chr4:52797138-52797157 None:intergenic 20.0%
!! AGAATAACGAAAAAAATTAG+AGG - Chr4:52799999-52800018 None:intergenic 20.0%
!! AGAGAATAAAACACTATTTA+AGG + Chr4:52797330-52797349 MsG0480021060.01.T01:intron 20.0%
!! ATACTAATTTAGAAACCTAA+AGG - Chr4:52800773-52800792 None:intergenic 20.0%
!! ATGAAACTTACAGTAATAAT+TGG - Chr4:52801541-52801560 None:intergenic 20.0%
!! ATTCAATTACTAGAAAAAGT+TGG + Chr4:52799918-52799937 MsG0480021060.01.T01:intron 20.0%
!! ATTCATTTGATAGAGTATAT+CGG + Chr4:52799134-52799153 MsG0480021060.01.T01:intron 20.0%
!! ATTGATCCATATAGATTATA+TGG - Chr4:52797369-52797388 None:intergenic 20.0%
!! GTAAATTATTTCGTTATTAG+TGG - Chr4:52799739-52799758 None:intergenic 20.0%
!! GTATATCTCCTAAAAATAAA+CGG + Chr4:52798536-52798555 MsG0480021060.01.T01:intron 20.0%
!! TAAAAATAAACGGAATTTAG+AGG + Chr4:52798919-52798938 MsG0480021060.01.T01:intron 20.0%
!! TAAAAATAAACGGTATTTAG+TGG + Chr4:52798546-52798565 MsG0480021060.01.T01:intron 20.0%
!! TACTAATTTAGAAACCTAAA+GGG - Chr4:52800772-52800791 None:intergenic 20.0%
!! TATATAATTAACTCACCAAA+GGG - Chr4:52799862-52799881 None:intergenic 20.0%
!! TTTCTTTATCCAATGAATTA+AGG - Chr4:52800921-52800940 None:intergenic 20.0%
!!! ACTAAATACCGTTTATTTTT+AGG - Chr4:52798547-52798566 None:intergenic 20.0%
!!! AGAATATGAGAGAATATTTT+AGG + Chr4:52796911-52796930 MsG0480021060.01.T01:CDS 20.0%
!!! ATAATGTTAGATGAAGTTTT+TGG + Chr4:52801505-52801524 MsG0480021060.01.T01:CDS 20.0%
!!! ATATTTGCATAATATTTTGC+AGG + Chr4:52801744-52801763 MsG0480021060.01.T01:intron 20.0%
!!! ATGCTTTTACATTTTTTTGT+AGG - Chr4:52799084-52799103 None:intergenic 20.0%
!!! ATTTTTTTCACTCTTCTTAT+TGG - Chr4:52798384-52798403 None:intergenic 20.0%
!!! CAATGATTAGTTTTCTTTTT+TGG + Chr4:52802493-52802512 MsG0480021060.01.T01:three_prime_UTR 20.0%
!!! CATTTCTCAAATTTTATTTG+GGG - Chr4:52798277-52798296 None:intergenic 20.0%
!!! GATATATATTCTCTCTTTTT+TGG - Chr4:52799237-52799256 None:intergenic 20.0%
!!! GTGATGTTTAAATTTTATCT+AGG + Chr4:52798145-52798164 MsG0480021060.01.T01:intron 20.0%
!!! TAATTATGATTATTTGGGAT+TGG + Chr4:52802193-52802212 MsG0480021060.01.T01:CDS 20.0%
!!! TATATAGGTTGATATGTTTT+CGG + Chr4:52802344-52802363 MsG0480021060.01.T01:three_prime_UTR 20.0%
!!! TCTAAATTCCGTTTATTTTT+AGG - Chr4:52798920-52798939 None:intergenic 20.0%
! AAAAGATAGATATAAGCATG+TGG - Chr4:52801684-52801703 None:intergenic 25.0%
! AAATAAGTTTCAACTACTTG+AGG + Chr4:52802163-52802182 MsG0480021060.01.T01:CDS 25.0%
! ACAAAACTATCTAGTTAGTT+AGG + Chr4:52797214-52797233 MsG0480021060.01.T01:intron 25.0%
! ACAGTAATAATTGGAAGTAA+TGG - Chr4:52801532-52801551 None:intergenic 25.0%
! ACCAATTATTACAGCAAAAA+TGG + Chr4:52800246-52800265 MsG0480021060.01.T01:intron 25.0%
! AGTGTTCCATATAATCTATA+TGG + Chr4:52797360-52797379 MsG0480021060.01.T01:intron 25.0%
! ATAACGAAAAAAATTAGAGG+CGG - Chr4:52799996-52800015 None:intergenic 25.0%
! ATTATCAATGTAACACTTTC+TGG + Chr4:52800966-52800985 MsG0480021060.01.T01:intron 25.0%
! CAGTAATAATTGGAAGTAAT+GGG - Chr4:52801531-52801550 None:intergenic 25.0%
! CCAAAATATTAATTCCAAAG+AGG + Chr4:52796850-52796869 MsG0480021060.01.T01:five_prime_UTR 25.0%
! CCAATTATTACAGCAAAAAT+GGG + Chr4:52800247-52800266 MsG0480021060.01.T01:intron 25.0%
! GTATATAATTAACTCACCAA+AGG - Chr4:52799863-52799882 None:intergenic 25.0%
! TATATATGGTTTATAGCATG+AGG - Chr4:52798448-52798467 None:intergenic 25.0%
! TATCCAATGAATTAAGGTAA+TGG - Chr4:52800915-52800934 None:intergenic 25.0%
! TATGTCCTTAAATTAAGACA+CGG - Chr4:52797548-52797567 None:intergenic 25.0%
! TCCTTGTAAAAACTAATATC+AGG + Chr4:52800467-52800486 MsG0480021060.01.T01:intron 25.0%
! TCTTTAATCCAAGAATAACA+AGG - Chr4:52802220-52802239 None:intergenic 25.0%
! TGTAACCAATAAAAAAACAC+AGG + Chr4:52800059-52800078 MsG0480021060.01.T01:intron 25.0%
! TGTTAGAGTCTTCATAAATT+TGG + Chr4:52800018-52800037 MsG0480021060.01.T01:intron 25.0%
! TGTTATTATTATCATGGATC+GGG - Chr4:52800657-52800676 None:intergenic 25.0%
! TTAAATTGCAGATACGATAA+CGG + Chr4:52800340-52800359 MsG0480021060.01.T01:intron 25.0%
!! AGTCGTGATGAAAAATATTT+TGG - Chr4:52800301-52800320 None:intergenic 25.0%
!! CATTTTTCTTGACAACTTTT+GGG + Chr4:52798310-52798329 MsG0480021060.01.T01:intron 25.0%
!! GTGTTATTATTATCATGGAT+CGG - Chr4:52800658-52800677 None:intergenic 25.0%
!! TATCAAAATAATGGGAACTT+TGG + Chr4:52796873-52796892 MsG0480021060.01.T01:exon 25.0%
!! TATTTTTCATCACGACTTTT+AGG + Chr4:52800304-52800323 MsG0480021060.01.T01:intron 25.0%
!! TCTACTAAAATTGTCTTGTT+TGG - Chr4:52798474-52798493 None:intergenic 25.0%
!!! AATATTAGTTTGTGAAAGGT+AGG - Chr4:52801387-52801406 None:intergenic 25.0%
!!! ACAATCCTGTGTTTTTTTAT+TGG - Chr4:52800067-52800086 None:intergenic 25.0%
!!! ACCTGATATTAGTTTTTACA+AGG - Chr4:52800471-52800490 None:intergenic 25.0%
!!! ATATTAGTTTGTGAAAGGTA+GGG - Chr4:52801386-52801405 None:intergenic 25.0%
!!! CAAAGAGGTATCAAAATAAT+GGG + Chr4:52796865-52796884 MsG0480021060.01.T01:exon 25.0%
!!! CATAACCAGGTTTTAAATAA+AGG - Chr4:52800414-52800433 None:intergenic 25.0%
!!! CCTCTTTGGAATTAATATTT+TGG - Chr4:52796853-52796872 None:intergenic 25.0%
!!! GAAGTTTCTTAACTGATTTT+TGG + Chr4:52802117-52802136 MsG0480021060.01.T01:CDS 25.0%
!!! GTTTTATTCTCTATAGATGA+AGG - Chr4:52797322-52797341 None:intergenic 25.0%
!!! GTTTTTGGTGAATACATAAA+GGG - Chr4:52801824-52801843 None:intergenic 25.0%
!!! TAGGAATATTAGTTTGTGAA+AGG - Chr4:52801391-52801410 None:intergenic 25.0%
!!! TCTACTAAAATCGTTTTGTT+TGG - Chr4:52798815-52798834 None:intergenic 25.0%
!!! TGTCGCTTTAACAAAAATAA+TGG - Chr4:52797515-52797534 None:intergenic 25.0%
!!! TTCTTCTAACAATTGCTTTT+TGG - Chr4:52802100-52802119 None:intergenic 25.0%
!!! TTTTTGCTGTAATAATTGGT+CGG - Chr4:52800246-52800265 None:intergenic 25.0%
!!! TTTTTGGTCAAGTAATATAG+TGG - Chr4:52799221-52799240 None:intergenic 25.0%
AAAAAACACAGGATTGTCTT+TGG + Chr4:52800070-52800089 MsG0480021060.01.T01:intron 30.0%
ACACATATATATGGTTCATG+AGG + Chr4:52797191-52797210 MsG0480021060.01.T01:intron 30.0%
ACACTTTAATGCGAGATTTA+AGG - Chr4:52799642-52799661 None:intergenic 30.0%
ACAGAATAACACAACAAGAA+AGG - Chr4:52800860-52800879 None:intergenic 30.0%
ACTAGAAAAAGTTGGAACAA+CGG + Chr4:52799926-52799945 MsG0480021060.01.T01:intron 30.0%
AGAGGCGGAAAAAATAAATT+TGG - Chr4:52799981-52800000 None:intergenic 30.0%
ATTTATTGAGCCAACAATCT+TGG + Chr4:52801459-52801478 MsG0480021060.01.T01:CDS 30.0%
ATTTGATAGAGTATATCGGT+AGG + Chr4:52799138-52799157 MsG0480021060.01.T01:intron 30.0%
CATCCATTACCTTAATTCAT+TGG + Chr4:52800909-52800928 MsG0480021060.01.T01:intron 30.0%
CCAAAAGTTGTCAAGAAAAA+TGG - Chr4:52798312-52798331 None:intergenic 30.0%
GAACCATATATATGTGTGTA+CGG - Chr4:52797188-52797207 None:intergenic 30.0%
GACCTATGAATTGAACTTAT+CGG + Chr4:52797574-52797593 MsG0480021060.01.T01:intron 30.0%
GTATTGAATTCATAAGCTCT+AGG + Chr4:52801785-52801804 MsG0480021060.01.T01:CDS 30.0%
GTTAAAGAATCTGTGGTTTA+TGG + Chr4:52801322-52801341 MsG0480021060.01.T01:CDS 30.0%
TACTAAATCCATTCACAGAT+AGG + Chr4:52799602-52799621 MsG0480021060.01.T01:intron 30.0%
TATGGATCAATGCTTGAAAA+TGG + Chr4:52797378-52797397 MsG0480021060.01.T01:intron 30.0%
TCGTTCTCATTATTTCATCT+TGG + Chr4:52799830-52799849 MsG0480021060.01.T01:CDS 30.0%
TGAGTTTGCAACTCTTATAT+AGG + Chr4:52802329-52802348 MsG0480021060.01.T01:three_prime_UTR 30.0%
TTATAAGGTGGAATTGATGA+AGG + Chr4:52801189-52801208 MsG0480021060.01.T01:intron 30.0%
TTTGTTAAGCAAAGTTATGC+GGG - Chr4:52797693-52797712 None:intergenic 30.0%
! AAAGAGTTGCTGTTCAAAAT+TGG + Chr4:52801082-52801101 MsG0480021060.01.T01:CDS 30.0%
! AAATAGAGGCTTTGTACATT+AGG - Chr4:52802463-52802482 None:intergenic 30.0%
! AACACTTTCTGGTGATTATA+AGG + Chr4:52800977-52800996 MsG0480021060.01.T01:intron 30.0%
! AGAAACTTCTTGATGATCAA+AGG + Chr4:52801299-52801318 MsG0480021060.01.T01:CDS 30.0%
! ATGATATCTGAAACATCATC+TGG + Chr4:52801862-52801881 MsG0480021060.01.T01:CDS 30.0%
! CATTAAAGTGTCTGAAAGAT+TGG + Chr4:52799651-52799670 MsG0480021060.01.T01:CDS 30.0%
! GAAACTTCTTGATGATCAAA+GGG + Chr4:52801300-52801319 MsG0480021060.01.T01:CDS 30.0%
! GGTGCACAACTTTTTATTAA+TGG - Chr4:52797301-52797320 None:intergenic 30.0%
! GTCTAAAGCAATGATTATTC+CGG - Chr4:52799381-52799400 None:intergenic 30.0%
! GTTTGTTAAGCAAAGTTATG+CGG - Chr4:52797694-52797713 None:intergenic 30.0%
! TATCATTCTCTTTTTCCACT+AGG - Chr4:52796996-52797015 None:intergenic 30.0%
! TTGCCTTGTTAGTTAATTAG+CGG + Chr4:52802260-52802279 MsG0480021060.01.T01:exon 30.0%
! TTGTTTGGTTGTATGGTTTT+TGG - Chr4:52798800-52798819 None:intergenic 30.0%
! TTTGCATAATATTTTGCAGG+TGG + Chr4:52801747-52801766 MsG0480021060.01.T01:intron 30.0%
!! ATGAGAGAATATTTTAGGAG+TGG + Chr4:52796916-52796935 MsG0480021060.01.T01:CDS 30.0%
!! CCAAAGAGGTATCAAAATAA+TGG + Chr4:52796864-52796883 MsG0480021060.01.T01:exon 30.0%
!! CCATTTTTCTTGACAACTTT+TGG + Chr4:52798309-52798328 MsG0480021060.01.T01:intron 30.0%
!! CCCATTTTTGCTGTAATAAT+TGG - Chr4:52800250-52800269 None:intergenic 30.0%
!! GAAAAACAAAAGAAGCATCT+TGG + Chr4:52796938-52796957 MsG0480021060.01.T01:CDS 30.0%
!! GTCTTGTTTGGTTGTATATA+TGG - Chr4:52798462-52798481 None:intergenic 30.0%
!!! AATCGTTTTGTTTGGTTGTA+TGG - Chr4:52798634-52798653 None:intergenic 30.0%
!!! CCATTATTTTGATACCTCTT+TGG - Chr4:52796867-52796886 None:intergenic 30.0%
!!! GGTTTTTGGTGAATACATAA+AGG - Chr4:52801825-52801844 None:intergenic 30.0%
AAAGAATCTGTGGTTTATGG+TGG + Chr4:52801325-52801344 MsG0480021060.01.T01:CDS 35.0%
AAAGCCATTAAGGTTATCCA+AGG + Chr4:52800206-52800225 MsG0480021060.01.T01:intron 35.0%
AACATTATTGCTGCATCAAG+TGG - Chr4:52801493-52801512 None:intergenic 35.0%
AACATTCCAACACTATAGCA+AGG + Chr4:52801245-52801264 MsG0480021060.01.T01:CDS 35.0%
AACTTTGCTTAACAAACCCT+TGG + Chr4:52797697-52797716 MsG0480021060.01.T01:intron 35.0%
AAGCCATTAAGGTTATCCAA+GGG + Chr4:52800207-52800226 MsG0480021060.01.T01:intron 35.0%
AATTAAGACACGGACTTGAT+TGG - Chr4:52797538-52797557 None:intergenic 35.0%
ACATTATTGCTGCATCAAGT+GGG - Chr4:52801492-52801511 None:intergenic 35.0%
ACTAGATCGAAGTGATCTAA+CGG + Chr4:52799441-52799460 MsG0480021060.01.T01:intron 35.0%
AGCAATTGACTATGTCATTG+TGG + Chr4:52801058-52801077 MsG0480021060.01.T01:CDS 35.0%
ATATGTGTGTACGGATCATT+TGG - Chr4:52797179-52797198 None:intergenic 35.0%
ATCGAACAAACACCGTTATA+AGG + Chr4:52799501-52799520 MsG0480021060.01.T01:intron 35.0%
CAACCAAACAAAACGATTTC+AGG + Chr4:52798636-52798655 MsG0480021060.01.T01:intron 35.0%
CAACGGCAAAAATTTAGAGA+CGG + Chr4:52799943-52799962 MsG0480021060.01.T01:intron 35.0%
CAAGTCCGTGTCTTAATTTA+AGG + Chr4:52797540-52797559 MsG0480021060.01.T01:intron 35.0%
CACAACAAGAAAGGTTACAA+TGG - Chr4:52800851-52800870 None:intergenic 35.0%
CATTTACACGAGAATAGCTA+GGG + Chr4:52797667-52797686 MsG0480021060.01.T01:intron 35.0%
CTTGGACAATAAAGCCATTA+AGG + Chr4:52800196-52800215 MsG0480021060.01.T01:intron 35.0%
GACCGATAAGTTCAATTCAT+AGG - Chr4:52797579-52797598 None:intergenic 35.0%
GATCCGTACACACATATATA+TGG + Chr4:52797182-52797201 MsG0480021060.01.T01:intron 35.0%
GGAGAGAATCACAACTAAAA+GGG + Chr4:52796959-52796978 MsG0480021060.01.T01:CDS 35.0%
GTGCATTAACATGTGTGAAA+TGG - Chr4:52797780-52797799 None:intergenic 35.0%
GTGTGGATCAAGAAAATGTT+TGG + Chr4:52801211-52801230 MsG0480021060.01.T01:CDS 35.0%
TACCTCTAAACGTGAATAAG+TGG - Chr4:52799189-52799208 None:intergenic 35.0%
TAGAGATAAACAAAGGCCAA+GGG - Chr4:52797716-52797735 None:intergenic 35.0%
TCAAAGGGTTAAAGAATCTG+TGG + Chr4:52801315-52801334 MsG0480021060.01.T01:CDS 35.0%
TCAATCACAAATTATGGTCG+CGG + Chr4:52800387-52800406 MsG0480021060.01.T01:intron 35.0%
TGAAACTTATTTGCAGTCCA+TGG - Chr4:52802155-52802174 None:intergenic 35.0%
TGGAGAGAATCACAACTAAA+AGG + Chr4:52796958-52796977 MsG0480021060.01.T01:CDS 35.0%
TGGGACAAAATCTTCTTTAC+AGG + Chr4:52800266-52800285 MsG0480021060.01.T01:intron 35.0%
TTAACTAACAAGGCAAGATC+TGG - Chr4:52802256-52802275 None:intergenic 35.0%
TTAGAGATAAACAAAGGCCA+AGG - Chr4:52797717-52797736 None:intergenic 35.0%
TTCATCTTCTTGGGATTTAG+AGG + Chr4:52800592-52800611 MsG0480021060.01.T01:CDS 35.0%
TTTCCCTAAATCTTGCATGA+GGG - Chr4:52797028-52797047 None:intergenic 35.0%
TTTGGTATAGATATCCACCA+TGG + Chr4:52802135-52802154 MsG0480021060.01.T01:CDS 35.0%
! AACTATCCTTGCTATAGTGT+TGG - Chr4:52801254-52801273 None:intergenic 35.0%
! AATAATGGGAACTTTGGAGA+TGG + Chr4:52796879-52796898 MsG0480021060.01.T01:exon 35.0%
! AATGAGCTTTTACTTGAACG+TGG - Chr4:52797425-52797444 None:intergenic 35.0%
! ACTTTCTGGTGATTATAAGG+TGG + Chr4:52800980-52800999 MsG0480021060.01.T01:intron 35.0%
! CGAGCGTGTTATTATTATCA+TGG - Chr4:52800663-52800682 None:intergenic 35.0%
! CTATAGTGTTGGAATGTTGT+GGG - Chr4:52801243-52801262 None:intergenic 35.0%
! GAGAAGTGTGGTGTTTAAAT+CGG + Chr4:52798052-52798071 MsG0480021060.01.T01:intron 35.0%
! TAGACAGATTTTCCAATCCA+AGG + Chr4:52797123-52797142 MsG0480021060.01.T01:intron 35.0%
! TGCCTTGTTAGTTAATTAGC+GGG + Chr4:52802261-52802280 MsG0480021060.01.T01:exon 35.0%
! TTTTTGTAGGATCGCTTCAA+TGG - Chr4:52799071-52799090 None:intergenic 35.0%
!! AAATTTTATTTGGGGAGACG+AGG - Chr4:52798269-52798288 None:intergenic 35.0%
!! ATTGATCGGTTCGAAAATAG+AGG - Chr4:52802477-52802496 None:intergenic 35.0%
!! TCTCCTGAAATCGTTTTGTT+TGG - Chr4:52798642-52798661 None:intergenic 35.0%
!! TTTGCTTTTCCGCCTTATAA+CGG - Chr4:52799516-52799535 None:intergenic 35.0%
!!! ACGACTTTTAGGTTTTGAAC+AGG + Chr4:52800315-52800334 MsG0480021060.01.T01:intron 35.0%
AACTTATTTGCAGTCCATGG+TGG - Chr4:52802152-52802171 None:intergenic 40.0%
AATAATTGGTCGGATTCCTG+TGG - Chr4:52800236-52800255 None:intergenic 40.0%
AGAAATTGTTCATGAGCCTC+TGG + Chr4:52799804-52799823 MsG0480021060.01.T01:CDS 40.0%
AGAGTATATCGGTAGGAGTT+GGG + Chr4:52799145-52799164 MsG0480021060.01.T01:intron 40.0%
AGATTGGATGTCAAGCAAGA+AGG + Chr4:52799667-52799686 MsG0480021060.01.T01:CDS 40.0%
AGCCATTAAGGTTATCCAAG+GGG + Chr4:52800208-52800227 MsG0480021060.01.T01:intron 40.0%
ATTATTGCTGCATCAAGTGG+GGG - Chr4:52801490-52801509 None:intergenic 40.0%
CACCCGCTAATTAACTAACA+AGG - Chr4:52802266-52802285 None:intergenic 40.0%
CACTAAATGACTGAGAAGTG+TGG + Chr4:52798040-52798059 MsG0480021060.01.T01:intron 40.0%
CATTATTGCTGCATCAAGTG+GGG - Chr4:52801491-52801510 None:intergenic 40.0%
CGAGGTGGATAGTATGATAT+TGG - Chr4:52798251-52798270 None:intergenic 40.0%
CGGATTCTTGTGGGAAAATA+TGG + Chr4:52801011-52801030 MsG0480021060.01.T01:CDS 40.0%
CTAACGTTCCTATCTGTGAA+TGG - Chr4:52799613-52799632 None:intergenic 40.0%
CTTGAAAGCAATGCTATTGC+AGG - Chr4:52799781-52799800 None:intergenic 40.0%
GAAATTGTTCATGAGCCTCT+GGG + Chr4:52799805-52799824 MsG0480021060.01.T01:CDS 40.0%
GAACAAACACCGTTATAAGG+CGG + Chr4:52799504-52799523 MsG0480021060.01.T01:intron 40.0%
GCATTTACACGAGAATAGCT+AGG + Chr4:52797666-52797685 MsG0480021060.01.T01:intron 40.0%
GGAAAATATGGAACTTGTGC+TGG + Chr4:52801023-52801042 MsG0480021060.01.T01:CDS 40.0%
GGACTCACTTTCATCTTCTT+GGG + Chr4:52800583-52800602 MsG0480021060.01.T01:CDS 40.0%
GGTGGATAGTATGATATTGG+TGG - Chr4:52798248-52798267 None:intergenic 40.0%
GTGAATAAGTGGCGAATCTT+AGG - Chr4:52799178-52799197 None:intergenic 40.0%
GTGAATACATAAAGGGCAAG+AGG - Chr4:52801817-52801836 None:intergenic 40.0%
GTGGCCTCAATCACAAATTA+TGG + Chr4:52800381-52800400 MsG0480021060.01.T01:intron 40.0%
GTTTCCCTAAATCTTGCATG+AGG - Chr4:52797029-52797048 None:intergenic 40.0%
TAGAGTATATCGGTAGGAGT+TGG + Chr4:52799144-52799163 MsG0480021060.01.T01:intron 40.0%
TATTGAGCCAACAATCTTGG+TGG + Chr4:52801462-52801481 MsG0480021060.01.T01:CDS 40.0%
TCATCTTGGAATTTGCCCTT+TGG + Chr4:52799844-52799863 MsG0480021060.01.T01:CDS 40.0%
TCATTCTGTTCTGCAATGCT+TGG - Chr4:52801846-52801865 None:intergenic 40.0%
TGCAGCAGTGTTAAAACCTT+CGG + Chr4:52800124-52800143 MsG0480021060.01.T01:intron 40.0%
TGGACTCACTTTCATCTTCT+TGG + Chr4:52800582-52800601 MsG0480021060.01.T01:CDS 40.0%
TGTCAAAGGAGAATTTCCCA+TGG - Chr4:52802067-52802086 None:intergenic 40.0%
TTTGCAGGTGGAAAAGATTG+AGG + Chr4:52801759-52801778 MsG0480021060.01.T01:intron 40.0%
! CGTCTCTAAAAGCTTCAAGA+CGG - Chr4:52797053-52797072 None:intergenic 40.0%
! GCGACCATAATTTGTGATTG+AGG - Chr4:52800388-52800407 None:intergenic 40.0%
! GCGGACCTTTATTTAAAACC+TGG + Chr4:52800406-52800425 MsG0480021060.01.T01:intron 40.0%
! GCTATAGTGTTGGAATGTTG+TGG - Chr4:52801244-52801263 None:intergenic 40.0%
! TTGGTGACTGAATGTGTCAA+AGG - Chr4:52802081-52802100 None:intergenic 40.0%
!! GGATTGGTCCTTGTTATTCT+TGG + Chr4:52802209-52802228 MsG0480021060.01.T01:CDS 40.0%
!! GGCTTTATTGTCCAAGTAAG+CGG - Chr4:52800192-52800211 None:intergenic 40.0%
!! GTGACATTCACGTTTTAACG+TGG + Chr4:52800362-52800381 MsG0480021060.01.T01:intron 40.0%
!! GTTCTGCAATGCTTGGTTTT+TGG - Chr4:52801839-52801858 None:intergenic 40.0%
!! TCTTGAAGCTTTTAGAGACG+AGG + Chr4:52797053-52797072 MsG0480021060.01.T01:CDS 40.0%
!! TTGTCTTTGGAACCACTGAT+AGG + Chr4:52800083-52800102 MsG0480021060.01.T01:intron 40.0%
AAAGTGAGTCCACAACTGCA+GGG - Chr4:52800574-52800593 None:intergenic 45.0%
AATAATAACACGCTCGAGCG+TGG + Chr4:52800667-52800686 MsG0480021060.01.T01:intron 45.0%
AATATCAGGTAGTGCACGAG+TGG + Chr4:52800481-52800500 MsG0480021060.01.T01:intron 45.0%
AATGCCAGAAGCAAGTAGAG+AGG - Chr4:52800168-52800187 None:intergenic 45.0%
ACATAAAGGGCAAGAGGCTT+AGG - Chr4:52801811-52801830 None:intergenic 45.0%
AGCAATGCTATTGCAGGTAG+TGG - Chr4:52799775-52799794 None:intergenic 45.0%
AGGTGGAATTGATGAAGGTG+TGG + Chr4:52801194-52801213 MsG0480021060.01.T01:intron 45.0%
AGTCTACCATTTGGAGGAGT+AGG + Chr4:52802020-52802039 MsG0480021060.01.T01:CDS 45.0%
ATAATGAGAACGACACCCAG+AGG - Chr4:52799823-52799842 None:intergenic 45.0%
ATATCAGGTAGTGCACGAGT+GGG + Chr4:52800482-52800501 MsG0480021060.01.T01:intron 45.0%
ATGGCCCTCATGCAAGATTT+AGG + Chr4:52797021-52797040 MsG0480021060.01.T01:CDS 45.0%
ATTATAAGGTGGCCGTGAAG+CGG + Chr4:52800991-52801010 MsG0480021060.01.T01:intron 45.0%
CGCCACTTATTCACGTTTAG+AGG + Chr4:52799184-52799203 MsG0480021060.01.T01:intron 45.0%
GAGTATATCGGTAGGAGTTG+GGG + Chr4:52799146-52799165 MsG0480021060.01.T01:intron 45.0%
GCAGATAGTCTACCATTTGG+AGG + Chr4:52802014-52802033 MsG0480021060.01.T01:CDS 45.0%
GCAGCAGATAGTCTACCATT+TGG + Chr4:52802011-52802030 MsG0480021060.01.T01:CDS 45.0%
GCCATTAAGGTTATCCAAGG+GGG + Chr4:52800209-52800228 MsG0480021060.01.T01:intron 45.0%
GTGACAAGAGACTCATAACC+AGG - Chr4:52800427-52800446 None:intergenic 45.0%
GTGGATTTGGCATGTACCAT+GGG + Chr4:52802048-52802067 MsG0480021060.01.T01:CDS 45.0%
TCCCCCTTGGATAACCTTAA+TGG - Chr4:52800213-52800232 None:intergenic 45.0%
TGGCCCTCATGCAAGATTTA+GGG + Chr4:52797022-52797041 MsG0480021060.01.T01:CDS 45.0%
TGTTCCTCTCTACTTGCTTC+TGG + Chr4:52800161-52800180 MsG0480021060.01.T01:intron 45.0%
TTCTGGCATTACCGCTTACT+TGG + Chr4:52800178-52800197 MsG0480021060.01.T01:intron 45.0%
! AGTGGATTTGGCATGTACCA+TGG + Chr4:52802047-52802066 MsG0480021060.01.T01:CDS 45.0%
! CGCAAGAGCATACACTTCAA+GGG + Chr4:52800697-52800716 MsG0480021060.01.T01:intron 45.0%
! TCGGCGCTTCAAGATTTGTT+AGG + Chr4:52798071-52798090 MsG0480021060.01.T01:intron 45.0%
! TTTTGTTCGTCGTTGTGCAG+TGG - Chr4:52799545-52799564 None:intergenic 45.0%
!! TTTTATTTGGGGAGACGAGG+TGG - Chr4:52798266-52798285 None:intergenic 45.0%
!! AAAGTTAAATAATTATATTA+AGG + Chr4:52798739-52798758 MsG0480021060.01.T01:intron 5.0%
!! ATAAATAAATAAATAAACTA+AGG - Chr4:52801726-52801745 None:intergenic 5.0%
!! TAAAATTTCTTATTATATAA+AGG - Chr4:52802419-52802438 None:intergenic 5.0%
!!! ATATCTTTTTTTTTTTATAT+AGG - Chr4:52797267-52797286 None:intergenic 5.0%
!!! TATTAAAGTTTTTTTTTTTT+TGG + Chr4:52797912-52797931 MsG0480021060.01.T01:intron 5.0%
!!! TGTTTTATTTTATTTTTATA+AGG + Chr4:52801174-52801193 MsG0480021060.01.T01:intron 5.0%
ACCCAACTCCAGTGTTACAG+GGG - Chr4:52800543-52800562 None:intergenic 50.0%
ACCCCTGTAACACTGGAGTT+GGG + Chr4:52800539-52800558 MsG0480021060.01.T01:CDS 50.0%
CACCCAACTCCAGTGTTACA+GGG - Chr4:52800544-52800563 None:intergenic 50.0%
CTACCATTTGGAGGAGTAGG+TGG + Chr4:52802023-52802042 MsG0480021060.01.T01:CDS 50.0%
CTGATAGGAGCTATAGCTGC+TGG + Chr4:52800098-52800117 MsG0480021060.01.T01:intron 50.0%
CTTCCACCTACTCCTCCAAA+TGG - Chr4:52802029-52802048 None:intergenic 50.0%
GAAAGTGAGTCCACAACTGC+AGG - Chr4:52800575-52800594 None:intergenic 50.0%
GCAAGTAGAGAGGAACATGC+TGG - Chr4:52800158-52800177 None:intergenic 50.0%
GCAGCTATAGCTCCTATCAG+TGG - Chr4:52800098-52800117 None:intergenic 50.0%
GCTCTGATGTTGAGCCCTTT+AGG + Chr4:52800755-52800774 MsG0480021060.01.T01:intron 50.0%
TATCAGGTAGTGCACGAGTG+GGG + Chr4:52800483-52800502 MsG0480021060.01.T01:intron 50.0%
TCCCACAAGAATCCGCTTCA+CGG - Chr4:52801006-52801025 None:intergenic 50.0%
TGGAAAATGCCCTGCAGTTG+TGG + Chr4:52800562-52800581 MsG0480021060.01.T01:CDS 50.0%
TTTGGAGGAGTAGGTGGAAG+TGG + Chr4:52802029-52802048 MsG0480021060.01.T01:CDS 50.0%
! GCGCAAGAGCATACACTTCA+AGG + Chr4:52800696-52800715 MsG0480021060.01.T01:intron 50.0%
! GGAGTAGGTGGAAGTGGATT+TGG + Chr4:52802035-52802054 MsG0480021060.01.T01:CDS 50.0%
! GGCAAGATCTGGCGTTTTGA+TGG - Chr4:52802245-52802264 None:intergenic 50.0%
ACTCCAGTGTTACAGGGGTC+AGG - Chr4:52800538-52800557 None:intergenic 55.0%
AGGGTTGCGTCGTTTCCTAG+TGG + Chr4:52796978-52796997 MsG0480021060.01.T01:CDS 55.0%
CATGCTGGAGACAACTCCGA+AGG - Chr4:52800143-52800162 None:intergenic 55.0%
CCACCCAACTCCAGTGTTAC+AGG - Chr4:52800545-52800564 None:intergenic 55.0%
CCTGTAACACTGGAGTTGGG+TGG + Chr4:52800542-52800561 MsG0480021060.01.T01:CDS 55.0%
GACCCCTGTAACACTGGAGT+TGG + Chr4:52800538-52800557 MsG0480021060.01.T01:CDS 55.0%
GGGGGATCCACCAAGATTGT+TGG - Chr4:52801472-52801491 None:intergenic 55.0%
! GCCGTGAAGCGGATTCTTGT+GGG + Chr4:52801002-52801021 MsG0480021060.01.T01:CDS 55.0%
GCACCTGACCCCTGTAACAC+TGG + Chr4:52800532-52800551 MsG0480021060.01.T01:CDS 60.0%
GGTTATCCAAGGGGGACCAC+AGG + Chr4:52800217-52800236 MsG0480021060.01.T01:intron 60.0%
! GGCCGTGAAGCGGATTCTTG+TGG + Chr4:52801001-52801020 MsG0480021060.01.T01:CDS 60.0%
CGGATTCCTGTGGTCCCCCT+TGG - Chr4:52800226-52800245 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 52796842 52802514 52796842 ID=MsG0480021060.01;Name=MsG0480021060.01
Chr4 mRNA 52796842 52802514 52796842 ID=MsG0480021060.01.T01;Parent=MsG0480021060.01;Name=MsG0480021060.01.T01;_AED=0.37;_eAED=0.37;_QI=41|0.75|0.88|1|0.87|1|9|243|422
Chr4 exon 52796842 52797074 52796842 ID=MsG0480021060.01.T01:exon:28543;Parent=MsG0480021060.01.T01
Chr4 exon 52799620 52799688 52799620 ID=MsG0480021060.01.T01:exon:28544;Parent=MsG0480021060.01.T01
Chr4 exon 52799769 52799865 52799769 ID=MsG0480021060.01.T01:exon:28545;Parent=MsG0480021060.01.T01
Chr4 exon 52800489 52800613 52800489 ID=MsG0480021060.01.T01:exon:28546;Parent=MsG0480021060.01.T01
Chr4 exon 52800999 52801103 52800999 ID=MsG0480021060.01.T01:exon:28547;Parent=MsG0480021060.01.T01
Chr4 exon 52801196 52801368 52801196 ID=MsG0480021060.01.T01:exon:28548;Parent=MsG0480021060.01.T01
Chr4 exon 52801459 52801549 52801459 ID=MsG0480021060.01.T01:exon:28549;Parent=MsG0480021060.01.T01
Chr4 exon 52801766 52801918 52801766 ID=MsG0480021060.01.T01:exon:28550;Parent=MsG0480021060.01.T01
Chr4 exon 52802008 52802514 52802008 ID=MsG0480021060.01.T01:exon:28551;Parent=MsG0480021060.01.T01
Chr4 five_prime_UTR 52796842 52796882 52796842 ID=MsG0480021060.01.T01:five_prime_utr;Parent=MsG0480021060.01.T01
Chr4 CDS 52796883 52797074 52796883 ID=MsG0480021060.01.T01:cds;Parent=MsG0480021060.01.T01
Chr4 CDS 52799620 52799688 52799620 ID=MsG0480021060.01.T01:cds;Parent=MsG0480021060.01.T01
Chr4 CDS 52799769 52799865 52799769 ID=MsG0480021060.01.T01:cds;Parent=MsG0480021060.01.T01
Chr4 CDS 52800489 52800613 52800489 ID=MsG0480021060.01.T01:cds;Parent=MsG0480021060.01.T01
Chr4 CDS 52800999 52801103 52800999 ID=MsG0480021060.01.T01:cds;Parent=MsG0480021060.01.T01
Chr4 CDS 52801196 52801368 52801196 ID=MsG0480021060.01.T01:cds;Parent=MsG0480021060.01.T01
Chr4 CDS 52801459 52801549 52801459 ID=MsG0480021060.01.T01:cds;Parent=MsG0480021060.01.T01
Chr4 CDS 52801766 52801918 52801766 ID=MsG0480021060.01.T01:cds;Parent=MsG0480021060.01.T01
Chr4 CDS 52802008 52802271 52802008 ID=MsG0480021060.01.T01:cds;Parent=MsG0480021060.01.T01
Chr4 three_prime_UTR 52802272 52802514 52802272 ID=MsG0480021060.01.T01:three_prime_utr;Parent=MsG0480021060.01.T01
Gene Sequence

>MsG0480021060.01.T01

ATGGGAACTTTGGAGATGGATCATCTAAAGAATATGAGAGAATATTTTAGGAGTGGAAAAACAAAAGAAGCATCTTGGAGAGAATCACAACTAAAAGGGTTGCGTCGTTTCCTAGTGGAAAAAGAGAATGATATATTCATGGCCCTCATGCAAGATTTAGGGAAACACCGTCTTGAAGCTTTTAGAGACGAGATAGGAACGTTAGTGAAGACCTTAAATCTCGCATTAAAGTGTCTGAAAGATTGGATGTCAAGCAAGAAGGCTCCACTACCTGCAATAGCATTGCTTTCAAGTGCAGAAATTGTTCATGAGCCTCTGGGTGTCGTTCTCATTATTTCATCTTGGAATTTGCCCTTTGGTAGTGCACGAGTGGGGAGCATTGTGATGTCAGCAGCTGCGAAGCACCTGACCCCTGTAACACTGGAGTTGGGTGGAAAATGCCCTGCAGTTGTGGACTCACTTTCATCTTCTTGGGATTTAGAGGTGGCCGTGAAGCGGATTCTTGTGGGAAAATATGGAACTTGTGCTGGTCAAGCATGCATAGCAATTGACTATGTCATTGTGGAAAAGAGTTGCTGTTCAAAATTGGTGGAATTGATGAAGGTGTGGATCAAGAAAATGTTTGGAGACAACCCACAACATTCCAACACTATAGCAAGGATAGTTAATAAACAACACTTAACTAGATTAAAGAAACTTCTTGATGATCAAAGGGTTAAAGAATCTGTGGTTTATGGTGGCTCAATTGACGAAGAAAACTTATTTATTGAGCCAACAATCTTGGTGGATCCCCCACTTGATGCAGCAATAATGTTAGATGAAGTTTTTGGCCCATTACTTCCAATTATTACTGTGGAAAAGATTGAGGACAGTATTGAATTCATAAGCTCTAGGCCTAAGCCTCTTGCCCTTTATGTATTCACCAAAAACCAAGCATTGCAGAACAGAATGATATCTGAAACATCATCTGGCAGTGTTACTTTCAATGATGCAATTCTACAAGTATATGCAGCAGATAGTCTACCATTTGGAGGAGTAGGTGGAAGTGGATTTGGCATGTACCATGGGAAATTCTCCTTTGACACATTCAGTCACCAAAAAGCAATTGTTAGAAGAAGTTTCTTAACTGATTTTTGGTATAGATATCCACCATGGACTGCAAATAAGTTTCAACTACTTGAGGTCTCTTATAATTATGATTATTTGGGATTGGTCCTTGTTATTCTTGGATTAAAGAGACCATCAAAACGCCAGATCTTGCCTTGTTAG

Protein sequence

>MsG0480021060.01.T01

MGTLEMDHLKNMREYFRSGKTKEASWRESQLKGLRRFLVEKENDIFMALMQDLGKHRLEAFRDEIGTLVKTLNLALKCLKDWMSSKKAPLPAIALLSSAEIVHEPLGVVLIISSWNLPFGSARVGSIVMSAAAKHLTPVTLELGGKCPAVVDSLSSSWDLEVAVKRILVGKYGTCAGQACIAIDYVIVEKSCCSKLVELMKVWIKKMFGDNPQHSNTIARIVNKQHLTRLKKLLDDQRVKESVVYGGSIDEENLFIEPTILVDPPLDAAIMLDEVFGPLLPIITVEKIEDSIEFISSRPKPLALYVFTKNQALQNRMISETSSGSVTFNDAILQVYAADSLPFGGVGGSGFGMYHGKFSFDTFSHQKAIVRRSFLTDFWYRYPPWTANKFQLLEVSYNYDYLGLVLVILGLKRPSKRQILPC*