AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041152.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041152.01.T01 MTR_7g105200 100.000 92 0 0 22 113 1 92 3.18e-63 187
MsG0780041152.01.T01 MTR_5g013980 52.212 113 54 0 1 113 23 135 3.35e-36 120
MsG0780041152.01.T03 MTR_7g105200 100.000 92 0 0 31 122 1 92 3.92e-63 187
MsG0780041152.01.T03 MTR_5g013980 52.586 116 55 0 7 122 20 135 3.47e-37 123
MsG0780041152.01.T02 MTR_7g105200 100.000 92 0 0 39 130 1 92 5.84e-63 187
MsG0780041152.01.T02 MTR_5g013980 49.194 124 55 1 7 130 20 135 7.30e-34 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041152.01.T01 AT3G11530 90.265 113 11 0 1 113 1 113 2.11e-73 213
MsG0780041152.01.T01 AT3G11530 90.265 113 11 0 1 113 1 113 2.11e-73 213
MsG0780041152.01.T01 AT3G11530 89.130 92 10 0 22 113 1 92 7.84e-58 173
MsG0780041152.01.T01 AT1G32410 52.252 111 50 1 1 108 23 133 6.07e-37 122
MsG0780041152.01.T01 AT1G32410 52.252 111 50 1 1 108 23 133 6.07e-37 122
MsG0780041152.01.T01 AT1G32410 52.252 111 50 1 1 108 23 133 6.07e-37 122
MsG0780041152.01.T01 AT1G32410 52.252 111 50 1 1 108 23 133 6.07e-37 122
MsG0780041152.01.T01 AT1G32410 52.252 111 50 1 1 108 23 133 6.07e-37 122
MsG0780041152.01.T03 AT3G11530 90.265 113 11 0 10 122 1 113 2.29e-73 214
MsG0780041152.01.T03 AT3G11530 90.265 113 11 0 10 122 1 113 2.29e-73 214
MsG0780041152.01.T03 AT3G11530 89.130 92 10 0 31 122 1 92 1.12e-57 173
MsG0780041152.01.T03 AT1G32410 51.667 120 55 1 1 117 14 133 1.68e-38 127
MsG0780041152.01.T03 AT1G32410 51.667 120 55 1 1 117 14 133 1.68e-38 127
MsG0780041152.01.T03 AT1G32410 51.667 120 55 1 1 117 14 133 1.68e-38 127
MsG0780041152.01.T03 AT1G32410 51.667 120 55 1 1 117 14 133 1.68e-38 127
MsG0780041152.01.T03 AT1G32410 51.667 120 55 1 1 117 14 133 1.68e-38 127
MsG0780041152.01.T02 AT3G11530 84.298 121 11 1 10 130 1 113 3.60e-70 206
MsG0780041152.01.T02 AT3G11530 84.298 121 11 1 10 130 1 113 3.60e-70 206
MsG0780041152.01.T02 AT3G11530 89.130 92 10 0 39 130 1 92 1.61e-57 173
MsG0780041152.01.T02 AT1G32410 48.438 128 55 2 1 125 14 133 2.22e-35 119
MsG0780041152.01.T02 AT1G32410 48.438 128 55 2 1 125 14 133 2.22e-35 119
MsG0780041152.01.T02 AT1G32410 48.438 128 55 2 1 125 14 133 2.22e-35 119
MsG0780041152.01.T02 AT1G32410 48.438 128 55 2 1 125 14 133 2.22e-35 119
MsG0780041152.01.T02 AT1G32410 48.438 128 55 2 1 125 14 133 2.22e-35 119

Find 15 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGGATGTGTAGCCTTGC+TGG 0.294386 7:-87221922 MsG0780041152.01.T01:intron
AATTGGTGGCCCATGTTATC+AGG 0.338531 7:-87220027 MsG0780041152.01.T01:intron
CATGTGCAATATACAACAAT+TGG 0.452781 7:-87220044 MsG0780041152.01.T01:CDS
TTGGGATGTGTAGCCTTGCT+GGG 0.459320 7:-87221921 MsG0780041152.01.T01:intron
GATGTGTAGCCTTGCTGGGT+TGG 0.460505 7:-87221917 MsG0780041152.01.T01:intron
TCAGTTCCGTTACTTGCAAT+CGG 0.475267 7:-87222551 None:intergenic
GACTAACTCACCTGATAACA+TGG 0.502341 7:+87220017 None:intergenic
CCGTGTACTGTCATCGCCAT+GGG 0.568066 7:+87222507 None:intergenic
GTGCAATATACAACAATTGG+TGG 0.577002 7:-87220041 MsG0780041152.01.T01:CDS
ACCGTGTACTGTCATCGCCA+TGG 0.577319 7:+87222506 None:intergenic
CGATTTCCGATTGCAAGTAA+CGG 0.589496 7:+87222545 None:intergenic
ACATAAAAGCCAACCCAGCA+AGG 0.597005 7:+87221908 None:intergenic
GAAGAGAGAGATAGCTCCCA+TGG 0.616027 7:-87222523 MsG0780041152.01.T01:five_prime_UTR
CCCATGGCGATGACAGTACA+CGG 0.650194 7:-87222507 MsG0780041152.01.T01:intron
ACTAACTCACCTGATAACAT+GGG 0.684284 7:+87220018 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTTAAACTTTGA+AGG + Chr7:87221322-87221341 None:intergenic 10.0%
!! AAAAAAGATAATGAATAGTT+TGG + Chr7:87219417-87219436 None:intergenic 15.0%
!! AAAAAGATAATGAATAGTTT+GGG + Chr7:87219416-87219435 None:intergenic 15.0%
!! TAAAATTTAAAGAGTGAATT+TGG + Chr7:87219703-87219722 None:intergenic 15.0%
!! TTAACATAAAAAAGAAAACA+AGG - Chr7:87222461-87222480 MsG0780041152.01.T01:intron 15.0%
!!! TCTATTTGAAATATTGAATT+TGG - Chr7:87221702-87221721 MsG0780041152.01.T01:intron 15.0%
!! AACGCAGTAAATATAATATA+TGG - Chr7:87222196-87222215 MsG0780041152.01.T01:intron 20.0%
!! AGAAACAGAATTCTTAAAAA+AGG - Chr7:87220475-87220494 MsG0780041152.01.T01:intron 20.0%
!! CTGAAAAAAAATTAATTGGT+AGG - Chr7:87220211-87220230 MsG0780041152.01.T01:intron 20.0%
!! CTTGCGAAAAATAATTAAAT+AGG - Chr7:87220411-87220430 MsG0780041152.01.T01:intron 20.0%
!! GAAACAGAATTCTTAAAAAA+GGG - Chr7:87220476-87220495 MsG0780041152.01.T01:intron 20.0%
!! GATTGAAAAAATGTAACAAA+AGG + Chr7:87219605-87219624 None:intergenic 20.0%
!! TCAATCATAGCTTAAATTTA+GGG - Chr7:87219619-87219638 MsG0780041152.01.T01:CDS 20.0%
!! TGAAAATGTCATATAAATCA+GGG + Chr7:87222130-87222149 None:intergenic 20.0%
!! TTCAATCATAGCTTAAATTT+AGG - Chr7:87219618-87219637 MsG0780041152.01.T01:CDS 20.0%
!! TTGAAAATGTCATATAAATC+AGG + Chr7:87222131-87222150 None:intergenic 20.0%
!!! AAAATTTTCCAACTAAAAAC+AGG + Chr7:87221901-87221920 None:intergenic 20.0%
!!! AACTATTAACCTTTTGTTTT+TGG - Chr7:87219931-87219950 MsG0780041152.01.T01:intron 20.0%
!!! ACTATTAACCTTTTGTTTTT+GGG - Chr7:87219932-87219951 MsG0780041152.01.T01:intron 20.0%
!!! ACTCTTTAAATTTTATACTC+AGG - Chr7:87219708-87219727 MsG0780041152.01.T01:intron 20.0%
!!! AGTTGGAAAATTTTAATAGT+CGG - Chr7:87221907-87221926 MsG0780041152.01.T01:exon 20.0%
!!! ATTAATTTTTTTTCAGAAGG+AGG + Chr7:87220207-87220226 None:intergenic 20.0%
!!! ATTGAATTTGGAATGATATA+GGG - Chr7:87221714-87221733 MsG0780041152.01.T01:intron 20.0%
!!! CCAATTAATTTTTTTTCAGA+AGG + Chr7:87220210-87220229 None:intergenic 20.0%
!!! CCTTCTGAAAAAAAATTAAT+TGG - Chr7:87220207-87220226 MsG0780041152.01.T01:intron 20.0%
!!! TATTGAATTTGGAATGATAT+AGG - Chr7:87221713-87221732 MsG0780041152.01.T01:intron 20.0%
!!! TGGAATTCTGTTATTTTTTA+CGG + Chr7:87220863-87220882 None:intergenic 20.0%
!!! TTAATTTTTTTTCAGAAGGA+GGG + Chr7:87220206-87220225 None:intergenic 20.0%
!!! TTTATTTTCTGCAATATCTT+TGG + Chr7:87221235-87221254 None:intergenic 20.0%
! AACATTACTCAGTTAATTTC+AGG + Chr7:87220033-87220052 None:intergenic 25.0%
! AATGTAAAGAGAATATTCAC+AGG - Chr7:87220768-87220787 MsG0780041152.01.T01:intron 25.0%
! AATTGAAAAAACCTCTACTA+TGG + Chr7:87219520-87219539 None:intergenic 25.0%
! AGATTATAATGACCTAATTG+AGG + Chr7:87219460-87219479 None:intergenic 25.0%
! CATATCAAAAAGAAAGCAAA+TGG + Chr7:87221802-87221821 None:intergenic 25.0%
! TGAAACTCTTTAATCTGTTT+AGG - Chr7:87219539-87219558 MsG0780041152.01.T01:CDS 25.0%
! TGGTATTATCTTGCAAAATA+AGG - Chr7:87219902-87219921 MsG0780041152.01.T01:CDS 25.0%
! TTAATAGTTATGATGTGAGT+TGG + Chr7:87221273-87221292 None:intergenic 25.0%
! TTTACATTCAATAATATCCC+AGG + Chr7:87220756-87220775 None:intergenic 25.0%
!! CATTTCTACACCTAATTTTT+CGG - Chr7:87220689-87220708 MsG0780041152.01.T01:intron 25.0%
!! CATTTGCTTTCTTTTTGATA+TGG - Chr7:87221800-87221819 MsG0780041152.01.T01:intron 25.0%
!! TTGAATTTGGAATGATATAG+GGG - Chr7:87221715-87221734 MsG0780041152.01.T01:intron 25.0%
!! TTTGCTCTTTTTATATGACA+TGG - Chr7:87221668-87221687 MsG0780041152.01.T01:intron 25.0%
!!! TCTGAGCTATATATTTTGAA+CGG - Chr7:87221484-87221503 MsG0780041152.01.T01:intron 25.0%
!!! TCTGTTTTATTAATCGTAGA+TGG - Chr7:87221116-87221135 MsG0780041152.01.T01:intron 25.0%
AAAACTTGGAACTAAGAGTT+TGG - Chr7:87219569-87219588 MsG0780041152.01.T01:CDS 30.0%
AAGCAAGACATGTTCAAATA+GGG - Chr7:87221635-87221654 MsG0780041152.01.T01:intron 30.0%
AATAAAACAGACAGTGATCT+TGG + Chr7:87221107-87221126 None:intergenic 30.0%
AATGAATAGTTTGGGAAGAA+AGG + Chr7:87219408-87219427 None:intergenic 30.0%
AATTGGTAGGCAATAAATAC+AGG - Chr7:87220224-87220243 MsG0780041152.01.T01:intron 30.0%
AGAACTTTATGACTCAAACT+TGG - Chr7:87221592-87221611 MsG0780041152.01.T01:intron 30.0%
ATGGTGATCACTCAAAAATA+GGG - Chr7:87221145-87221164 MsG0780041152.01.T01:intron 30.0%
CATGTGCAATATACAACAAT+TGG - Chr7:87221827-87221846 MsG0780041152.01.T01:intron 30.0%
GCTAGATTACTGTTACTATT+AGG + Chr7:87221427-87221446 None:intergenic 30.0%
GTTTAGCAAGTTCATTATAG+AGG + Chr7:87220989-87221008 None:intergenic 30.0%
GTTTATATTCTATCTGCCAT+AGG + Chr7:87221196-87221215 None:intergenic 30.0%
TAATTGAGGCAATAATAACG+AGG + Chr7:87219446-87219465 None:intergenic 30.0%
TACAAGAAACTTAGCATTAG+TGG + Chr7:87219650-87219669 None:intergenic 30.0%
TATGGTGATCACTCAAAAAT+AGG - Chr7:87221144-87221163 MsG0780041152.01.T01:intron 30.0%
TCGTTATTATTGCCTCAATT+AGG - Chr7:87219445-87219464 MsG0780041152.01.T01:three_prime_UTR 30.0%
TGCTAAGTTTCTTGTATGTT+TGG - Chr7:87219654-87219673 MsG0780041152.01.T01:intron 30.0%
TTCAATTCAATATGAGTGCA+CGG - Chr7:87222146-87222165 MsG0780041152.01.T01:intron 30.0%
TTGCATCTGATGTTACAAAT+CGG - Chr7:87219806-87219825 MsG0780041152.01.T01:intron 30.0%
! AGAATTGTTGGTGAATTAGA+GGG - Chr7:87221380-87221399 MsG0780041152.01.T01:intron 30.0%
! TAGAATTGTTGGTGAATTAG+AGG - Chr7:87221379-87221398 MsG0780041152.01.T01:intron 30.0%
! TTTGAGCTTTGTATCATGAT+TGG - Chr7:87219882-87219901 MsG0780041152.01.T01:CDS 30.0%
!! AATGAACTTGCTAAACCTTA+GGG - Chr7:87220993-87221012 MsG0780041152.01.T01:intron 30.0%
!! CTGAGCTATATATTTTGAAC+GGG - Chr7:87221485-87221504 MsG0780041152.01.T01:intron 30.0%
!! GTTTTATTAATCGTAGATGG+TGG - Chr7:87221119-87221138 MsG0780041152.01.T01:intron 30.0%
!! TAATGAACTTGCTAAACCTT+AGG - Chr7:87220992-87221011 MsG0780041152.01.T01:intron 30.0%
!!! ATTTTTTACGGTTGTAAGCT+AGG + Chr7:87220851-87220870 None:intergenic 30.0%
AAGAAGAAGCAAGAGAAACA+CGG - Chr7:87220311-87220330 MsG0780041152.01.T01:intron 35.0%
AATATTCCAAGTGAGGAAAC+AGG + Chr7:87221055-87221074 None:intergenic 35.0%
ACGACTGATTAGAAATTGAG+TGG + Chr7:87222000-87222019 None:intergenic 35.0%
ACTAACTCACCTGATAACAT+GGG + Chr7:87221856-87221875 None:intergenic 35.0%
ACTCAAACTTGGATTGAACA+GGG - Chr7:87221603-87221622 MsG0780041152.01.T01:intron 35.0%
AGCAAGTTCATTATAGAGGT+AGG + Chr7:87220985-87221004 None:intergenic 35.0%
AGTTCATTATAGAGGTAGGA+AGG + Chr7:87220981-87221000 None:intergenic 35.0%
ATAATATCCCAGGCAATTCA+TGG + Chr7:87220746-87220765 None:intergenic 35.0%
ATAGGGCATATAGATATTGC+TGG - Chr7:87221162-87221181 MsG0780041152.01.T01:intron 35.0%
ATATGGTATTATGCTGCAGT+TGG - Chr7:87222213-87222232 MsG0780041152.01.T01:intron 35.0%
ATGCCTAAGGATTATAGGAA+TGG + Chr7:87222288-87222307 None:intergenic 35.0%
ATGTGTAAGGTTCGTATAAG+GGG + Chr7:87220918-87220937 None:intergenic 35.0%
ATTATGTCCTGCTAGTCATT+AGG - Chr7:87222433-87222452 MsG0780041152.01.T01:intron 35.0%
CAACCATAAGCAAATTGAGA+TGG + Chr7:87219483-87219502 None:intergenic 35.0%
CAATTAGCAATCCATAGTAG+AGG - Chr7:87219506-87219525 MsG0780041152.01.T01:CDS 35.0%
CAATTTCTAATCAGTCGTGA+TGG - Chr7:87222002-87222021 MsG0780041152.01.T01:intron 35.0%
CATGTGTAAGGTTCGTATAA+GGG + Chr7:87220919-87220938 None:intergenic 35.0%
CTACACATCCCAAAAACAAA+AGG + Chr7:87219943-87219962 None:intergenic 35.0%
CTAGCAGGACATAATAACTA+TGG + Chr7:87222428-87222447 None:intergenic 35.0%
GAAGCAAGACATGTTCAAAT+AGG - Chr7:87221634-87221653 MsG0780041152.01.T01:intron 35.0%
GAGATTATACTGCTGTTACT+GGG - Chr7:87219676-87219695 MsG0780041152.01.T01:intron 35.0%
GTGCAATATACAACAATTGG+TGG - Chr7:87221830-87221849 MsG0780041152.01.T01:intron 35.0%
GTTATTACCAATCATCGTCA+AGG + Chr7:87222400-87222419 None:intergenic 35.0%
GTTCTGTAATCATGCAGAAT+AGG - Chr7:87220246-87220265 MsG0780041152.01.T01:intron 35.0%
GTTTAGGTCGTAACAAAACT+TGG - Chr7:87219555-87219574 MsG0780041152.01.T01:CDS 35.0%
TAGCCATTCCTATAATCCTT+AGG - Chr7:87222282-87222301 MsG0780041152.01.T01:intron 35.0%
TGCAATTTCGTCATGATACA+CGG - Chr7:87220556-87220575 MsG0780041152.01.T01:intron 35.0%
TTATGTCCTGCTAGTCATTA+GGG - Chr7:87222434-87222453 MsG0780041152.01.T01:intron 35.0%
TTTGAGTGTGCCGAAAAATT+AGG + Chr7:87220702-87220721 None:intergenic 35.0%
! ATGTTACAAATCGGTGTTCT+GGG - Chr7:87219815-87219834 MsG0780041152.01.T01:intron 35.0%
! GGATATTTGAGAGATTTTGC+AGG - Chr7:87220497-87220516 MsG0780041152.01.T01:intron 35.0%
! TAGCATTTTGCTACAGATTC+TGG - Chr7:87219993-87220012 MsG0780041152.01.T01:intron 35.0%
! TCTCCATCTCAATTTGCTTA+TGG - Chr7:87219477-87219496 MsG0780041152.01.T01:intron 35.0%
! TGCTTTCTTTTTGATATGGC+AGG - Chr7:87221804-87221823 MsG0780041152.01.T01:intron 35.0%
! TGGAACTAAGAGTTTGGAAT+AGG - Chr7:87219575-87219594 MsG0780041152.01.T01:CDS 35.0%
! TTTTCGGCACACTCAAATTT+AGG - Chr7:87220705-87220724 MsG0780041152.01.T01:intron 35.0%
!! AGCTATATATTTTGAACGGG+TGG - Chr7:87221488-87221507 MsG0780041152.01.T01:intron 35.0%
!! TTAGTCTTTTGTGCTCAAAC+TGG - Chr7:87221871-87221890 MsG0780041152.01.T01:intron 35.0%
!!! GTACGTAGTCATTTTTTGTG+TGG + Chr7:87220883-87220902 None:intergenic 35.0%
AACAATCCCTAATGACTAGC+AGG + Chr7:87222443-87222462 None:intergenic 40.0%
AAGTTAGTTAGCAGCAGGAA+TGG + Chr7:87220948-87220967 None:intergenic 40.0%
AATTCATGGTCAGGCTTAGT+GGG + Chr7:87220732-87220751 None:intergenic 40.0%
ACAGTGATCTTGGAGTTTGA+GGG + Chr7:87221097-87221116 None:intergenic 40.0%
AGAAGAAGCAAGAGAAACAC+GGG - Chr7:87220312-87220331 MsG0780041152.01.T01:intron 40.0%
AGTTAGTTAGCAGCAGGAAT+GGG + Chr7:87220947-87220966 None:intergenic 40.0%
ATGCCTTGCTTATTCTTTGG+AGG - Chr7:87221969-87221988 MsG0780041152.01.T01:intron 40.0%
ATTCCTGCTGCTAACTAACT+TGG - Chr7:87220947-87220966 MsG0780041152.01.T01:intron 40.0%
CACTTGGAATATTCCTTCTG+TGG - Chr7:87221062-87221081 MsG0780041152.01.T01:intron 40.0%
CAGAAGGAATATTCCAAGTG+AGG + Chr7:87221062-87221081 None:intergenic 40.0%
CCAAAGAATAAGCAAGGCAT+AGG + Chr7:87221969-87221988 None:intergenic 40.0%
CCTATGCCTTGCTTATTCTT+TGG - Chr7:87221966-87221985 MsG0780041152.01.T01:intron 40.0%
CTAAACCTTAGGGCTTACTT+AGG - Chr7:87221003-87221022 MsG0780041152.01.T01:intron 40.0%
GAACATGCTGCTAGAATTGT+TGG - Chr7:87221368-87221387 MsG0780041152.01.T01:intron 40.0%
GAAGAACGATACAGTTTCCA+TGG + Chr7:87222505-87222524 None:intergenic 40.0%
GACTAACTCACCTGATAACA+TGG + Chr7:87221857-87221876 None:intergenic 40.0%
GACTCAAACTTGGATTGAAC+AGG - Chr7:87221602-87221621 MsG0780041152.01.T01:intron 40.0%
GCATGTGTAAGGTTCGTATA+AGG + Chr7:87220920-87220939 None:intergenic 40.0%
GGAGATTATACTGCTGTTAC+TGG - Chr7:87219675-87219694 MsG0780041152.01.T01:intron 40.0%
TGGAATATTCCTTCTGTGGA+TGG - Chr7:87221066-87221085 MsG0780041152.01.T01:intron 40.0%
TGTGCATGCCTAAGGATTAT+AGG + Chr7:87222293-87222312 None:intergenic 40.0%
TTACGGTTGTAAGCTAGGTA+AGG + Chr7:87220846-87220865 None:intergenic 40.0%
TTCCTGCTGCTAACTAACTT+GGG - Chr7:87220948-87220967 MsG0780041152.01.T01:intron 40.0%
TTCTAATCAGTCGTGATGGT+GGG - Chr7:87222006-87222025 MsG0780041152.01.T01:intron 40.0%
TTTCTAATCAGTCGTGATGG+TGG - Chr7:87222005-87222024 MsG0780041152.01.T01:intron 40.0%
! AAGGTGCTTCTATCCTCTAA+TGG + Chr7:87220827-87220846 None:intergenic 40.0%
! ATCCTCTCCCAATGAGTTTT+GGG + Chr7:87221563-87221582 None:intergenic 40.0%
! ATTGTTGGTGAATTAGAGGG+AGG - Chr7:87221383-87221402 MsG0780041152.01.T01:intron 40.0%
! ATTTTGCAGGTGAAGCCTAA+AGG - Chr7:87220510-87220529 MsG0780041152.01.T01:intron 40.0%
! CTTGCTTATTCTTTGGAGGT+GGG - Chr7:87221973-87221992 MsG0780041152.01.T01:intron 40.0%
! GATGCTGCAAAGTTTTTGAC+TGG - Chr7:87222239-87222258 MsG0780041152.01.T01:intron 40.0%
! GATGTTACAAATCGGTGTTC+TGG - Chr7:87219814-87219833 MsG0780041152.01.T01:intron 40.0%
! TGTTACAAATCGGTGTTCTG+GGG - Chr7:87219816-87219835 MsG0780041152.01.T01:intron 40.0%
! TTGACTGGAGCATCATCTAT+GGG - Chr7:87222254-87222273 MsG0780041152.01.T01:intron 40.0%
! TTTGACTGGAGCATCATCTA+TGG - Chr7:87222253-87222272 MsG0780041152.01.T01:intron 40.0%
!! TAATCGTAGATGGTGGACTA+TGG - Chr7:87221126-87221145 MsG0780041152.01.T01:intron 40.0%
!! TAGACTGCTTTTCAGGGTTA+TGG + Chr7:87220126-87220145 None:intergenic 40.0%
!! TATAGATATTGCTGGCTCTG+TGG - Chr7:87221170-87221189 MsG0780041152.01.T01:intron 40.0%
!!! CTGGAAGTCCTGTTTTTAGT+TGG - Chr7:87221890-87221909 MsG0780041152.01.T01:CDS 40.0%
AACCAGCACACTGTTGAATG+TGG - Chr7:87220583-87220602 MsG0780041152.01.T01:intron 45.0%
AAGTGAGGAAACAGGACACA+AGG + Chr7:87221047-87221066 None:intergenic 45.0%
ACATAAAAGCCAACCCAGCA+AGG + Chr7:87219966-87219985 None:intergenic 45.0%
ACCCTGAAAAGCAGTCTACT+AGG - Chr7:87220128-87220147 MsG0780041152.01.T01:intron 45.0%
AGAAACACGGGATTCACACT+TGG - Chr7:87220324-87220343 MsG0780041152.01.T01:intron 45.0%
AGGTCAGACCCAAAACTCAT+TGG - Chr7:87221552-87221571 MsG0780041152.01.T01:intron 45.0%
AGGTTCGTATAAGGGGATAG+TGG + Chr7:87220911-87220930 None:intergenic 45.0%
ATTCATGGTCAGGCTTAGTG+GGG + Chr7:87220731-87220750 None:intergenic 45.0%
CAAAACTCATTGGGAGAGGA+TGG - Chr7:87221562-87221581 MsG0780041152.01.T01:intron 45.0%
CAATCATGTGTGCATGCCTA+AGG + Chr7:87222301-87222320 None:intergenic 45.0%
CAATTCATGGTCAGGCTTAG+TGG + Chr7:87220733-87220752 None:intergenic 45.0%
CAGTAATCTAGCGACTAGCA+AGG - Chr7:87221435-87221454 MsG0780041152.01.T01:intron 45.0%
CAGTGATCTTGGAGTTTGAG+GGG + Chr7:87221096-87221115 None:intergenic 45.0%
CATGCACACATGATTGAGAC+TGG - Chr7:87222305-87222324 MsG0780041152.01.T01:intron 45.0%
CCACCTCCAAAGAATAAGCA+AGG + Chr7:87221975-87221994 None:intergenic 45.0%
GAATGGGTCTTGCATGTGTA+AGG + Chr7:87220931-87220950 None:intergenic 45.0%
GACAGTGATCTTGGAGTTTG+AGG + Chr7:87221098-87221117 None:intergenic 45.0%
GCTGAGACTTAATACAGCCA+TGG - Chr7:87222485-87222504 MsG0780041152.01.T01:intron 45.0%
GGTATTATGCTGCAGTTGGA+TGG - Chr7:87222217-87222236 MsG0780041152.01.T01:intron 45.0%
GGTCAGACCCAAAACTCATT+GGG - Chr7:87221553-87221572 MsG0780041152.01.T01:intron 45.0%
GTCTCTTGCTTACAGTTCTC+TGG - Chr7:87222037-87222056 MsG0780041152.01.T01:intron 45.0%
TAGCTGTGAGTCCTCAAACT+TGG - Chr7:87221522-87221541 MsG0780041152.01.T01:intron 45.0%
TCATGCCTAAGTAAGCCCTA+AGG + Chr7:87221011-87221030 None:intergenic 45.0%
TTGTGTCCTGTTTCCTCACT+TGG - Chr7:87221046-87221065 MsG0780041152.01.T01:intron 45.0%
! AATTGGTGGCCCATGTTATC+AGG - Chr7:87221844-87221863 MsG0780041152.01.T01:intron 45.0%
! CATCCTCTCCCAATGAGTTT+TGG + Chr7:87221564-87221583 None:intergenic 45.0%
! CCTTGCTTATTCTTTGGAGG+TGG - Chr7:87221972-87221991 MsG0780041152.01.T01:intron 45.0%
! CTTTGAAGGCTCGAATCTGA+TGG + Chr7:87221308-87221327 None:intergenic 45.0%
! TCGTATAAGGGGATAGTGGT+AGG + Chr7:87220907-87220926 None:intergenic 45.0%
! TCTAATCAGTCGTGATGGTG+GGG - Chr7:87222007-87222026 MsG0780041152.01.T01:intron 45.0%
! TGACTGGAGCATCATCTATG+GGG - Chr7:87222255-87222274 MsG0780041152.01.T01:intron 45.0%
!! GCCTAGTAGACTGCTTTTCA+GGG + Chr7:87220132-87220151 None:intergenic 45.0%
!! TGCCTAGTAGACTGCTTTTC+AGG + Chr7:87220133-87220152 None:intergenic 45.0%
AAGCCTGACCATGAATTGCC+TGG - Chr7:87220735-87220754 MsG0780041152.01.T01:intron 50.0%
AAGCGAGCCTTGACGATGAT+TGG - Chr7:87222390-87222409 MsG0780041152.01.T01:intron 50.0%
AATCATCGTCAAGGCTCGCT+TGG + Chr7:87222391-87222410 None:intergenic 50.0%
ACAGAGCTTGGCTCCATTAG+AGG - Chr7:87220811-87220830 MsG0780041152.01.T01:intron 50.0%
ACCTGAGACCTCCAAGTTTG+AGG + Chr7:87221536-87221555 None:intergenic 50.0%
AGCACATACATCAGAGCTGC+AGG + Chr7:87221942-87221961 None:intergenic 50.0%
AGCCTGACCATGAATTGCCT+GGG - Chr7:87220736-87220755 MsG0780041152.01.T01:intron 50.0%
ATCCCAGGCAATTCATGGTC+AGG + Chr7:87220741-87220760 None:intergenic 50.0%
CACACTTGGCACACAGAAGT+AGG - Chr7:87220338-87220357 MsG0780041152.01.T01:intron 50.0%
CTCATTGGGAGAGGATGGAT+AGG - Chr7:87221567-87221586 MsG0780041152.01.T01:intron 50.0%
CTCCCAAGTTAGTTAGCAGC+AGG + Chr7:87220953-87220972 None:intergenic 50.0%
CTGTGAGTCCTCAAACTTGG+AGG - Chr7:87221525-87221544 MsG0780041152.01.T01:intron 50.0%
GAAGAGAGAGATAGCTCCCA+TGG - Chr7:87219348-87219367 MsG0780041152.01.T01:three_prime_UTR 50.0%
GACCCAAAACTCATTGGGAG+AGG - Chr7:87221558-87221577 MsG0780041152.01.T01:intron 50.0%
TCCTCAAACTTGGAGGTCTC+AGG - Chr7:87221532-87221551 MsG0780041152.01.T01:intron 50.0%
TCCTGTGCATTCACAGAGCT+TGG - Chr7:87220799-87220818 MsG0780041152.01.T01:intron 50.0%
TGAGGAAACAGGACACAAGG+TGG + Chr7:87221044-87221063 None:intergenic 50.0%
TGCCACATTCAACAGTGTGC+TGG + Chr7:87220588-87220607 None:intergenic 50.0%
! TGCAGCTCTGATGTATGTGC+TGG - Chr7:87221941-87221960 MsG0780041152.01.T01:intron 50.0%
! TTGGGATGTGTAGCCTTGCT+GGG - Chr7:87219950-87219969 MsG0780041152.01.T01:intron 50.0%
! TTTGGGATGTGTAGCCTTGC+TGG - Chr7:87219949-87219968 MsG0780041152.01.T01:intron 50.0%
!! CTAATCAGTCGTGATGGTGG+GGG - Chr7:87222008-87222027 MsG0780041152.01.T01:intron 50.0%
!! TAATCAGTCGTGATGGTGGG+GGG - Chr7:87222009-87222028 MsG0780041152.01.T01:intron 50.0%
ACCGTGTACTGTCATCGCCA+TGG + Chr7:87219368-87219387 None:intergenic 55.0%
AGGGGTCTACCATCCACAGA+AGG + Chr7:87221078-87221097 None:intergenic 55.0%
CCCATGGCGATGACAGTACA+CGG - Chr7:87219364-87219383 MsG0780041152.01.T01:three_prime_UTR 55.0%
CCGTGTACTGTCATCGCCAT+GGG + Chr7:87219367-87219386 None:intergenic 55.0%
CGAAATTGCAGCCCAATCGC+AGG + Chr7:87220546-87220565 None:intergenic 55.0%
GCAGACACAAGCCTGCGATT+GGG - Chr7:87220532-87220551 MsG0780041152.01.T01:intron 55.0%
GCAGGCTTGTGTCTGCCTTT+AGG + Chr7:87220528-87220547 None:intergenic 55.0%
GCCAAGCTCTGTGAATGCAC+AGG + Chr7:87220803-87220822 None:intergenic 55.0%
! GATGTGTAGCCTTGCTGGGT+TGG - Chr7:87219954-87219973 MsG0780041152.01.T01:intron 55.0%
!! ATTGCTGGCTCTGTGGCCTA+TGG - Chr7:87221177-87221196 MsG0780041152.01.T01:intron 55.0%
!!! TGTCAATCGCGCCGCTTTTG+CGG + Chr7:87220661-87220680 None:intergenic 55.0%
CATCGTCAAGGCTCGCTTGG+TGG + Chr7:87222388-87222407 None:intergenic 60.0%
GCGATCACGGACTCGTGTAG+CGG + Chr7:87220638-87220657 None:intergenic 60.0%
GGCAGACACAAGCCTGCGAT+TGG - Chr7:87220531-87220550 MsG0780041152.01.T01:intron 60.0%
TCCGTGATCGCCCGCAAAAG+CGG - Chr7:87220647-87220666 MsG0780041152.01.T01:intron 60.0%
TGGCACGTAACTCGTCGCAG+TGG - Chr7:87220603-87220622 MsG0780041152.01.T01:intron 60.0%
!!! GTCAATCGCGCCGCTTTTGC+GGG + Chr7:87220660-87220679 None:intergenic 60.0%
GGACTCGTGTAGCGGCAGAG+AGG + Chr7:87220630-87220649 None:intergenic 65.0%
!!! GCCGCTTTTGCGGGCGATCA+CGG + Chr7:87220651-87220670 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 87219328 87222565 87219328 ID=MsG0780041152.01;Name=MsG0780041152.01
Chr7 mRNA 87219328 87222565 87219328 ID=MsG0780041152.01.T01;Parent=MsG0780041152.01;Name=MsG0780041152.01.T01;_AED=0.46;_eAED=0.46;_QI=77|1|1|1|0|0|5|150|113
Chr7 exon 87221879 87221930 87221879 ID=MsG0780041152.01.T01:exon:12025;Parent=MsG0780041152.01.T01
Chr7 exon 87222508 87222565 87222508 ID=MsG0780041152.01.T01:exon:12024;Parent=MsG0780041152.01.T01
Chr7 five_prime_UTR 87222508 87222565 87222508 ID=MsG0780041152.01.T01:five_prime_utr;Parent=MsG0780041152.01.T01
Chr7 five_prime_UTR 87221912 87221930 87221912 ID=MsG0780041152.01.T01:five_prime_utr;Parent=MsG0780041152.01.T01
Chr7 CDS 87221879 87221911 87221879 ID=MsG0780041152.01.T01:cds;Parent=MsG0780041152.01.T01
Chr7 CDS 87220028 87220067 87220028 ID=MsG0780041152.01.T01:cds;Parent=MsG0780041152.01.T01
Chr7 CDS 87219863 87219947 87219863 ID=MsG0780041152.01.T01:cds;Parent=MsG0780041152.01.T01
Chr7 CDS 87219478 87219661 87219478 ID=MsG0780041152.01.T01:cds;Parent=MsG0780041152.01.T01
Chr7 three_prime_UTR 87219328 87219477 87219328 ID=MsG0780041152.01.T01:three_prime_utr;Parent=MsG0780041152.01.T01
Chr7 mRNA 87219328 87221938 87219328 ID=MsG0780041152.01.T02;Parent=MsG0780041152.01;Name=MsG0780041152.01.T02;_AED=0.46;_eAED=0.46;_QI=0|0.66|0.5|1|0|0|4|150|130
Chr7 exon 87220028 87220091 87220028 ID=MsG0780041152.01.T02:exon:12030;Parent=MsG0780041152.01.T02
Chr7 CDS 87221879 87221938 87221879 ID=MsG0780041152.01.T02:cds;Parent=MsG0780041152.01.T02
Chr7 CDS 87220028 87220091 87220028 ID=MsG0780041152.01.T02:cds;Parent=MsG0780041152.01.T02
Chr7 CDS 87219863 87219947 87219863 ID=MsG0780041152.01.T02:cds;Parent=MsG0780041152.01.T02
Chr7 CDS 87219478 87219661 87219478 ID=MsG0780041152.01.T02:cds;Parent=MsG0780041152.01.T02
Chr7 three_prime_UTR 87219328 87219477 87219328 ID=MsG0780041152.01.T02:three_prime_utr;Parent=MsG0780041152.01.T02
Chr7 mRNA 87219328 87221938 87219328 ID=MsG0780041152.01.T03;Parent=MsG0780041152.01;Name=MsG0780041152.01.T03;_AED=0.47;_eAED=0.47;_QI=0|1|0.75|1|0|0|4|150|122
Chr7 CDS 87221879 87221938 87221879 ID=MsG0780041152.01.T03:cds;Parent=MsG0780041152.01.T03
Chr7 CDS 87220028 87220067 87220028 ID=MsG0780041152.01.T03:cds;Parent=MsG0780041152.01.T03
Chr7 CDS 87219863 87219947 87219863 ID=MsG0780041152.01.T03:cds;Parent=MsG0780041152.01.T03
Chr7 CDS 87219478 87219661 87219478 ID=MsG0780041152.01.T03:cds;Parent=MsG0780041152.01.T03
Chr7 three_prime_UTR 87219328 87219477 87219328 ID=MsG0780041152.01.T03:three_prime_utr;Parent=MsG0780041152.01.T03
Gene Sequence

>MsG0780041152.01.T01

ATGTTTTCTTCTAGCATTTTGCTACAGATTCTGGCATGTGCAATATACAACAATTGGTGGCCCATGTTATCAGCTCTGATGTATGTGCTGGTACCTATGCCTTGCTTATTCTTTGGAGGTGGGTCCACTCAATTTCTAATCAGTCGTGATGGTGGGGGTTGGATGGATGCTGCAAAGTTTTTGACTGGAGCATCATCTATGGGGAGCATAGCCATTCCTATAATCCTTAGGCATGCACACATGATTGAGACTGGAGCAATGCTCATTGAGCTTGTATCGTTCTTCATATTTATATGTACTGTTATGTGTTTCCACCAAGCGAGCCTTGACGATGATTGGTAA

>MsG0780041152.01.T03

ATGTGTAGCCTTGCTGGGTTGGCTTTTATGTTTTCTTCTAGCATTTTGCTACAGATTCTGGCATGTGCAATATACAACAATTGGTGGCCCATGTTATCAGCTCTGATGTATGTGCTGGTACCTATGCCTTGCTTATTCTTTGGAGGTGGGTCCACTCAATTTCTAATCAGTCGTGATGGTGGGGGTTGGATGGATGCTGCAAAGTTTTTGACTGGAGCATCATCTATGGGGAGCATAGCCATTCCTATAATCCTTAGGCATGCACACATGATTGAGACTGGAGCAATGCTCATTGAGCTTGTATCGTTCTTCATATTTATATGTACTGTTATGTGTTTCCACCAAGCGAGCCTTGACGATGATTGGTAA

>MsG0780041152.01.T02

ATGTGTAGCCTTGCTGGGTTGGCTTTTATGTTTTCTTCTAGCATTTTGCTACAGATTCTGTTTGCTTTCTTTTTGATATGGCAGGCATGTGCAATATACAACAATTGGTGGCCCATGTTATCAGCTCTGATGTATGTGCTGGTACCTATGCCTTGCTTATTCTTTGGAGGTGGGTCCACTCAATTTCTAATCAGTCGTGATGGTGGGGGTTGGATGGATGCTGCAAAGTTTTTGACTGGAGCATCATCTATGGGGAGCATAGCCATTCCTATAATCCTTAGGCATGCACACATGATTGAGACTGGAGCAATGCTCATTGAGCTTGTATCGTTCTTCATATTTATATGTACTGTTATGTGTTTCCACCAAGCGAGCCTTGACGATGATTGGTAA
Protein sequence

>MsG0780041152.01.T01

MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWMDAAKFLTGASSMGSIAIPIILRHAHMIETGAMLIELVSFFIFICTVMCFHQASLDDDW*

>MsG0780041152.01.T03

MCSLAGLAFMFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWMDAAKFLTGASSMGSIAIPIILRHAHMIETGAMLIELVSFFIFICTVMCFHQASLDDDW*

>MsG0780041152.01.T02

MCSLAGLAFMFSSSILLQILFAFFLIWQACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWMDAAKFLTGASSMGSIAIPIILRHAHMIETGAMLIELVSFFIFICTVMCFHQASLDDDW*