AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006840.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006840.01.T03 MTR_7g105200 100.000 92 0 0 31 122 1 92 3.92e-63 187
MsG0280006840.01.T03 MTR_5g013980 52.586 116 55 0 7 122 20 135 3.47e-37 123
MsG0280006840.01.T01 MTR_7g105200 100.000 92 0 0 22 113 1 92 3.18e-63 187
MsG0280006840.01.T01 MTR_5g013980 52.212 113 54 0 1 113 23 135 3.35e-36 120
MsG0280006840.01.T02 MTR_7g105200 100.000 92 0 0 39 130 1 92 5.84e-63 187
MsG0280006840.01.T02 MTR_5g013980 49.194 124 55 1 7 130 20 135 7.30e-34 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006840.01.T03 AT3G11530 90.265 113 11 0 10 122 1 113 2.29e-73 214
MsG0280006840.01.T03 AT3G11530 90.265 113 11 0 10 122 1 113 2.29e-73 214
MsG0280006840.01.T03 AT3G11530 89.130 92 10 0 31 122 1 92 1.12e-57 173
MsG0280006840.01.T03 AT1G32410 51.667 120 55 1 1 117 14 133 1.68e-38 127
MsG0280006840.01.T03 AT1G32410 51.667 120 55 1 1 117 14 133 1.68e-38 127
MsG0280006840.01.T03 AT1G32410 51.667 120 55 1 1 117 14 133 1.68e-38 127
MsG0280006840.01.T03 AT1G32410 51.667 120 55 1 1 117 14 133 1.68e-38 127
MsG0280006840.01.T03 AT1G32410 51.667 120 55 1 1 117 14 133 1.68e-38 127
MsG0280006840.01.T01 AT3G11530 90.265 113 11 0 1 113 1 113 2.11e-73 213
MsG0280006840.01.T01 AT3G11530 90.265 113 11 0 1 113 1 113 2.11e-73 213
MsG0280006840.01.T01 AT3G11530 89.130 92 10 0 22 113 1 92 7.84e-58 173
MsG0280006840.01.T01 AT1G32410 52.252 111 50 1 1 108 23 133 6.07e-37 122
MsG0280006840.01.T01 AT1G32410 52.252 111 50 1 1 108 23 133 6.07e-37 122
MsG0280006840.01.T01 AT1G32410 52.252 111 50 1 1 108 23 133 6.07e-37 122
MsG0280006840.01.T01 AT1G32410 52.252 111 50 1 1 108 23 133 6.07e-37 122
MsG0280006840.01.T01 AT1G32410 52.252 111 50 1 1 108 23 133 6.07e-37 122
MsG0280006840.01.T02 AT3G11530 84.298 121 11 1 10 130 1 113 3.60e-70 206
MsG0280006840.01.T02 AT3G11530 84.298 121 11 1 10 130 1 113 3.60e-70 206
MsG0280006840.01.T02 AT3G11530 89.130 92 10 0 39 130 1 92 1.61e-57 173
MsG0280006840.01.T02 AT1G32410 48.438 128 55 2 1 125 14 133 2.22e-35 119
MsG0280006840.01.T02 AT1G32410 48.438 128 55 2 1 125 14 133 2.22e-35 119
MsG0280006840.01.T02 AT1G32410 48.438 128 55 2 1 125 14 133 2.22e-35 119
MsG0280006840.01.T02 AT1G32410 48.438 128 55 2 1 125 14 133 2.22e-35 119
MsG0280006840.01.T02 AT1G32410 48.438 128 55 2 1 125 14 133 2.22e-35 119

Find 16 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGGATGTGTAGCCTTGC+TGG 0.294386 2:-6999168 MsG0280006840.01.T01:intron
AATTGGTGGCCCATGTTATC+AGG 0.338531 2:-6997243 MsG0280006840.01.T01:intron
CATGTGCAATATACAACAAT+TGG 0.452781 2:-6997260 MsG0280006840.01.T01:CDS
TTGGGATGTGTAGCCTTGCT+GGG 0.459320 2:-6999167 MsG0280006840.01.T01:intron
GATGTGTAGCCTTGCTGGGT+TGG 0.460505 2:-6999163 MsG0280006840.01.T01:intron
CATGGGAGCTATCTCTCTCT+TGG 0.469616 2:+6999782 None:intergenic
TCAGTTCCGTTACTTGCAAT+CGG 0.475267 2:-6999809 None:intergenic
GACTAACTCACCTGATAACA+TGG 0.502341 2:+6997233 None:intergenic
CCGTGTACTGTCATCGCCAT+GGG 0.568066 2:+6999765 None:intergenic
GTGCAATATACAACAATTGG+TGG 0.577002 2:-6997257 MsG0280006840.01.T01:CDS
ACCGTGTACTGTCATCGCCA+TGG 0.577319 2:+6999764 None:intergenic
GGATTTCCGATTGCAAGTAA+CGG 0.592711 2:+6999803 None:intergenic
ACATAAAAGCCAACCCAGCA+AGG 0.597005 2:+6999154 None:intergenic
CAAGAGAGAGATAGCTCCCA+TGG 0.601444 2:-6999781 MsG0280006840.01.T01:five_prime_UTR
CCCATGGCGATGACAGTACA+CGG 0.650194 2:-6999765 MsG0280006840.01.T01:intron
ACTAACTCACCTGATAACAT+GGG 0.684284 2:+6997234 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTTAAACTTTGA+AGG + Chr2:6998579-6998598 None:intergenic 10.0%
!! AAAAAAGATAATGAATAGTT+TGG + Chr2:6996632-6996651 None:intergenic 15.0%
!! AAAAAGATAATGAATAGTTT+GGG + Chr2:6996631-6996650 None:intergenic 15.0%
!! GCAGTAAATATAATATATTA+TGG - Chr2:6999454-6999473 MsG0280006840.01.T01:intron 15.0%
!! TAAAATTTAAAGAGTGAATT+TGG + Chr2:6996930-6996949 None:intergenic 15.0%
!! TTAACATAAAAAAGAAAACA+AGG - Chr2:6999719-6999738 MsG0280006840.01.T01:intron 15.0%
!!! ATATAGATCATAAATTTTCA+AGG + Chr2:6997547-6997566 None:intergenic 15.0%
!!! TATAGATCATAAATTTTCAA+GGG + Chr2:6997546-6997565 None:intergenic 15.0%
!!! TCTATTTGAAATATTGAATT+TGG - Chr2:6998959-6998978 MsG0280006840.01.T01:intron 15.0%
!! AGAAACAGAATTCTTAAAAA+AGG - Chr2:6997732-6997751 MsG0280006840.01.T01:intron 20.0%
!! CTTGCGAAAAATAATTAAAT+AGG - Chr2:6997668-6997687 MsG0280006840.01.T01:intron 20.0%
!! GAAACAGAATTCTTAAAAAA+GGG - Chr2:6997733-6997752 MsG0280006840.01.T01:intron 20.0%
!! GATTGAAAAAATGTAACAAA+AGG + Chr2:6996820-6996839 None:intergenic 20.0%
!! TATAAATTCACTTGTATGTT+TGG - Chr2:6996881-6996900 MsG0280006840.01.T01:intron 20.0%
!! TATAATAAACTTAGCATTAG+TGG + Chr2:6996865-6996884 None:intergenic 20.0%
!! TCAATCATAGCTTAAATTTA+AGG - Chr2:6996834-6996853 MsG0280006840.01.T01:CDS 20.0%
!! TCTGAAAAAAATTTATTGGT+AGG - Chr2:6997443-6997462 MsG0280006840.01.T01:intron 20.0%
!! TGAAAATGTCATATAAATCA+GGG + Chr2:6999387-6999406 None:intergenic 20.0%
!! TGATATTATCTTGCAAAATA+AGG - Chr2:6997129-6997148 MsG0280006840.01.T01:CDS 20.0%
!! TTGAAAATGTCATATAAATC+AGG + Chr2:6999388-6999407 None:intergenic 20.0%
!!! AAAATTTTCCAACTAAAAAC+AGG + Chr2:6999158-6999177 None:intergenic 20.0%
!!! AACTATTAACCTTTTGTTTT+TGG - Chr2:6997158-6997177 MsG0280006840.01.T01:intron 20.0%
!!! AATAAATTTTTTTCAGAAGG+AGG + Chr2:6997440-6997459 None:intergenic 20.0%
!!! ACCAATAAATTTTTTTCAGA+AGG + Chr2:6997443-6997462 None:intergenic 20.0%
!!! ACTATTAACCTTTTGTTTTT+GGG - Chr2:6997159-6997178 MsG0280006840.01.T01:intron 20.0%
!!! ACTCTTTAAATTTTATACTC+AGG - Chr2:6996935-6996954 MsG0280006840.01.T01:intron 20.0%
!!! AGTTGGAAAATTTTAATAGT+CGG - Chr2:6999164-6999183 MsG0280006840.01.T01:intron 20.0%
!!! ATAAATTTTTTTCAGAAGGA+GGG + Chr2:6997439-6997458 None:intergenic 20.0%
!!! ATTGAATTTGGAATGATATA+GGG - Chr2:6998971-6998990 MsG0280006840.01.T01:intron 20.0%
!!! TATTGAATTTGGAATGATAT+AGG - Chr2:6998970-6998989 MsG0280006840.01.T01:intron 20.0%
!!! TCCTTCTGAAAAAAATTTAT+TGG - Chr2:6997439-6997458 MsG0280006840.01.T01:intron 20.0%
!!! TGGAATTCTGTTATTTTTTA+CGG + Chr2:6998120-6998139 None:intergenic 20.0%
!!! TTTATTTTCTGCAATATCTT+TGG + Chr2:6998492-6998511 None:intergenic 20.0%
! AACATTACTCAGTTAATTTC+AGG + Chr2:6997260-6997279 None:intergenic 25.0%
! AATGTAAAGAGAATATTCAC+AGG - Chr2:6998025-6998044 MsG0280006840.01.T01:intron 25.0%
! AATTGAAAAAACCTCTACTA+TGG + Chr2:6996735-6996754 None:intergenic 25.0%
! AGATTATAATGACCTAATTG+AGG + Chr2:6996675-6996694 None:intergenic 25.0%
! CATATCAAAAAGAAAGCAAA+TGG + Chr2:6999059-6999078 None:intergenic 25.0%
! TGAAACTCTTTAATCTGTTT+AGG - Chr2:6996754-6996773 MsG0280006840.01.T01:CDS 25.0%
! TTAATAGTTATGATGTGAGT+TGG + Chr2:6998530-6998549 None:intergenic 25.0%
! TTTACATTCAATAATATCCC+AGG + Chr2:6998013-6998032 None:intergenic 25.0%
!! CATTTCTACACCTAATTTTT+CGG - Chr2:6997946-6997965 MsG0280006840.01.T01:intron 25.0%
!! CATTTGCTTTCTTTTTGATA+TGG - Chr2:6999057-6999076 MsG0280006840.01.T01:intron 25.0%
!! TTGAATTTGGAATGATATAG+GGG - Chr2:6998972-6998991 MsG0280006840.01.T01:intron 25.0%
!! TTTGCTCTTTTTATATGACA+TGG - Chr2:6998925-6998944 MsG0280006840.01.T01:intron 25.0%
!!! TCTGAGCTATATATTTTGAA+CGG - Chr2:6998741-6998760 MsG0280006840.01.T01:intron 25.0%
!!! TCTGTTTTATTAATCGTAGA+TGG - Chr2:6998373-6998392 MsG0280006840.01.T01:intron 25.0%
AAAACTTGGAACTAAGACTT+TGG - Chr2:6996784-6996803 MsG0280006840.01.T01:CDS 30.0%
AAGCAAGACATGTTCAAATA+GGG - Chr2:6998892-6998911 MsG0280006840.01.T01:intron 30.0%
AATGAATAGTTTGGGAAGAA+AGG + Chr2:6996623-6996642 None:intergenic 30.0%
AGAACTTTATGACTCAAACT+TGG - Chr2:6998849-6998868 MsG0280006840.01.T01:intron 30.0%
ATGGTGATCACTCAAAAATA+GGG - Chr2:6998402-6998421 MsG0280006840.01.T01:intron 30.0%
CATGTGCAATATACAACAAT+TGG - Chr2:6999084-6999103 MsG0280006840.01.T01:intron 30.0%
GCTAGATTACTGTTACTATT+AGG + Chr2:6998684-6998703 None:intergenic 30.0%
GTTTAGCAAGTTCATTATAG+AGG + Chr2:6998246-6998265 None:intergenic 30.0%
GTTTATATTCTATCTGCCAT+AGG + Chr2:6998453-6998472 None:intergenic 30.0%
TAATTGAGGCAATAATAACG+AGG + Chr2:6996661-6996680 None:intergenic 30.0%
TATGGTGATCACTCAAAAAT+AGG - Chr2:6998401-6998420 MsG0280006840.01.T01:intron 30.0%
TATTGGTAGGCAATAAATAC+AGG - Chr2:6997456-6997475 MsG0280006840.01.T01:intron 30.0%
TCGTTATTATTGCCTCAATT+AGG - Chr2:6996660-6996679 MsG0280006840.01.T01:three_prime_UTR 30.0%
TTGCATCTGATGTTACAAAT+CGG - Chr2:6997033-6997052 MsG0280006840.01.T01:intron 30.0%
! AGAATTGTTGGTGAATTAGA+GGG - Chr2:6998637-6998656 MsG0280006840.01.T01:intron 30.0%
! TAGAATTGTTGGTGAATTAG+AGG - Chr2:6998636-6998655 MsG0280006840.01.T01:intron 30.0%
! TTTTCAATTCAATGAGTGCA+CGG - Chr2:6999401-6999420 MsG0280006840.01.T01:intron 30.0%
!! AATGAACTTGCTAAACCTTA+GGG - Chr2:6998250-6998269 MsG0280006840.01.T01:intron 30.0%
!! CTGAGCTATATATTTTGAAC+GGG - Chr2:6998742-6998761 MsG0280006840.01.T01:intron 30.0%
!! GTTTTATTAATCGTAGATGG+TGG - Chr2:6998376-6998395 MsG0280006840.01.T01:intron 30.0%
!! TAATGAACTTGCTAAACCTT+AGG - Chr2:6998249-6998268 MsG0280006840.01.T01:intron 30.0%
!!! ATTTTTTACGGTTGTAAGCT+AGG + Chr2:6998108-6998127 None:intergenic 30.0%
AAGAAGAAGCAAGAGAAACA+CGG - Chr2:6997568-6997587 MsG0280006840.01.T01:intron 35.0%
AATATTCCAAGTGAGGAAAC+AGG + Chr2:6998312-6998331 None:intergenic 35.0%
ACGACTGATTAGAAATTGAG+TGG + Chr2:6999257-6999276 None:intergenic 35.0%
ACTAACTCACCTGATAACAT+GGG + Chr2:6999113-6999132 None:intergenic 35.0%
ACTCAAACTTGGATTGAACA+GGG - Chr2:6998860-6998879 MsG0280006840.01.T01:intron 35.0%
AGCAAGTTCATTATAGAGGT+AGG + Chr2:6998242-6998261 None:intergenic 35.0%
AGTTCATTATAGAGGTAGGA+AGG + Chr2:6998238-6998257 None:intergenic 35.0%
ATAATATCCCAGGCAATTCA+TGG + Chr2:6998003-6998022 None:intergenic 35.0%
ATAGGGCATATAGATATTGC+TGG - Chr2:6998419-6998438 MsG0280006840.01.T01:intron 35.0%
ATGCCTAAGGATTATAGGAA+TGG + Chr2:6999546-6999565 None:intergenic 35.0%
ATTATGTCCTGCTAGTCATT+AGG - Chr2:6999691-6999710 MsG0280006840.01.T01:intron 35.0%
CAATTAGCAATCCATAGTAG+AGG - Chr2:6996721-6996740 MsG0280006840.01.T01:CDS 35.0%
CAATTTCTAATCAGTCGTGA+TGG - Chr2:6999259-6999278 MsG0280006840.01.T01:intron 35.0%
CTACACATCCCAAAAACAAA+AGG + Chr2:6997170-6997189 None:intergenic 35.0%
CTAGCAGGACATAATAACTA+TGG + Chr2:6999686-6999705 None:intergenic 35.0%
GAAGCAAGACATGTTCAAAT+AGG - Chr2:6998891-6998910 MsG0280006840.01.T01:intron 35.0%
GTGCAATATACAACAATTGG+TGG - Chr2:6999087-6999106 MsG0280006840.01.T01:intron 35.0%
GTTATTACCAATCATCGTCA+AGG + Chr2:6999658-6999677 None:intergenic 35.0%
GTTCTGTAATCATGCAGAAT+AGG - Chr2:6997478-6997497 MsG0280006840.01.T01:intron 35.0%
GTTTAGGTCGTAACAAAACT+TGG - Chr2:6996770-6996789 MsG0280006840.01.T01:CDS 35.0%
TAGCCATTCCTATAATCCTT+AGG - Chr2:6999540-6999559 MsG0280006840.01.T01:intron 35.0%
TGCAATTTCGTCATGATACA+CGG - Chr2:6997813-6997832 MsG0280006840.01.T01:intron 35.0%
TTATGGTATTATGCTGCAGT+TGG - Chr2:6999471-6999490 MsG0280006840.01.T01:intron 35.0%
TTATGTCCTGCTAGTCATTA+GGG - Chr2:6999692-6999711 MsG0280006840.01.T01:intron 35.0%
TTTGAGTGTGCCGAAAAATT+AGG + Chr2:6997959-6997978 None:intergenic 35.0%
! ATGTTACAAATCGGTGTTCT+GGG - Chr2:6997042-6997061 MsG0280006840.01.T01:intron 35.0%
! GGATATTTGAGAGATTTTGC+AGG - Chr2:6997754-6997773 MsG0280006840.01.T01:intron 35.0%
! TAGCATTTTGCTACAGATTC+TGG - Chr2:6997220-6997239 MsG0280006840.01.T01:intron 35.0%
! TGCTTTCTTTTTGATATGGC+AGG - Chr2:6999061-6999080 MsG0280006840.01.T01:intron 35.0%
! TTTTCGGCACACTCAAATTT+AGG - Chr2:6997962-6997981 MsG0280006840.01.T01:intron 35.0%
!! AGCTATATATTTTGAACGGG+TGG - Chr2:6998745-6998764 MsG0280006840.01.T01:intron 35.0%
!! TGGAACTAAGACTTTGGAAT+AGG - Chr2:6996790-6996809 MsG0280006840.01.T01:CDS 35.0%
!! TTAGTCTTTTGTGCTCAAAC+TGG - Chr2:6999128-6999147 MsG0280006840.01.T01:CDS 35.0%
!!! GTACGTAGTCATTTTTTGTG+TGG + Chr2:6998140-6998159 None:intergenic 35.0%
AACAATCCCTAATGACTAGC+AGG + Chr2:6999701-6999720 None:intergenic 40.0%
AAGTTAGTTAGCAGCAGGAA+TGG + Chr2:6998205-6998224 None:intergenic 40.0%
AATTCATGGTCAGGCTTAGT+GGG + Chr2:6997989-6998008 None:intergenic 40.0%
AGAAGAAGCAAGAGAAACAC+GGG - Chr2:6997569-6997588 MsG0280006840.01.T01:intron 40.0%
AGTTAGTTAGCAGCAGGAAT+GGG + Chr2:6998204-6998223 None:intergenic 40.0%
ATGCCTTGCTTATTCTTTGG+AGG - Chr2:6999226-6999245 MsG0280006840.01.T01:intron 40.0%
ATGTGTAAGGCTCGTATAAG+GGG + Chr2:6998175-6998194 None:intergenic 40.0%
ATTCCTGCTGCTAACTAACT+TGG - Chr2:6998204-6998223 MsG0280006840.01.T01:intron 40.0%
CAACCATAAGCGAATTGAGA+TGG + Chr2:6996698-6996717 None:intergenic 40.0%
CACTTGGAATATTCCTTCTG+TGG - Chr2:6998319-6998338 MsG0280006840.01.T01:intron 40.0%
CAGAAGGAATATTCCAAGTG+AGG + Chr2:6998319-6998338 None:intergenic 40.0%
CATGTGTAAGGCTCGTATAA+GGG + Chr2:6998176-6998195 None:intergenic 40.0%
CCAAAGAATAAGCAAGGCAT+AGG + Chr2:6999226-6999245 None:intergenic 40.0%
CCTATGCCTTGCTTATTCTT+TGG - Chr2:6999223-6999242 MsG0280006840.01.T01:intron 40.0%
CTAAACCTTAGGGCTTACTT+AGG - Chr2:6998260-6998279 MsG0280006840.01.T01:intron 40.0%
GAACATGCTGCTAGAATTGT+TGG - Chr2:6998625-6998644 MsG0280006840.01.T01:intron 40.0%
GACTAACTCACCTGATAACA+TGG + Chr2:6999114-6999133 None:intergenic 40.0%
GACTCAAACTTGGATTGAAC+AGG - Chr2:6998859-6998878 MsG0280006840.01.T01:intron 40.0%
GCTGAGACTTAATACAGCAA+TGG - Chr2:6999743-6999762 MsG0280006840.01.T01:intron 40.0%
TCTCCATCTCAATTCGCTTA+TGG - Chr2:6996692-6996711 MsG0280006840.01.T01:intron 40.0%
TGGAATATTCCTTCTGTGGA+TGG - Chr2:6998323-6998342 MsG0280006840.01.T01:intron 40.0%
TGTGCATGCCTAAGGATTAT+AGG + Chr2:6999551-6999570 None:intergenic 40.0%
TTACGGTTGTAAGCTAGGTA+AGG + Chr2:6998103-6998122 None:intergenic 40.0%
TTCCTGCTGCTAACTAACTT+GGG - Chr2:6998205-6998224 MsG0280006840.01.T01:intron 40.0%
TTCTAATCAGTCGTGATGGT+GGG - Chr2:6999263-6999282 MsG0280006840.01.T01:intron 40.0%
TTTCTAATCAGTCGTGATGG+TGG - Chr2:6999262-6999281 MsG0280006840.01.T01:intron 40.0%
! AAGGTGCTTCTATCCTCTAA+TGG + Chr2:6998084-6998103 None:intergenic 40.0%
! ACAGTGATCTTCGAGTTTGA+GGG + Chr2:6998354-6998373 None:intergenic 40.0%
! ATCCTCTCCCAATGAGTTTT+GGG + Chr2:6998820-6998839 None:intergenic 40.0%
! ATTGTTGGTGAATTAGAGGG+AGG - Chr2:6998640-6998659 MsG0280006840.01.T01:intron 40.0%
! ATTTTGCAGGTGAAGCCTAA+AGG - Chr2:6997767-6997786 MsG0280006840.01.T01:intron 40.0%
! CTTGCTTATTCTTTGGAGGT+GGG - Chr2:6999230-6999249 MsG0280006840.01.T01:intron 40.0%
! GATGCTGCAAAGTTTTTGAC+TGG - Chr2:6999497-6999516 MsG0280006840.01.T01:intron 40.0%
! GATGTTACAAATCGGTGTTC+TGG - Chr2:6997041-6997060 MsG0280006840.01.T01:intron 40.0%
! TGTTACAAATCGGTGTTCTG+GGG - Chr2:6997043-6997062 MsG0280006840.01.T01:intron 40.0%
! TTGACTGGAGCATCATCTAT+GGG - Chr2:6999512-6999531 MsG0280006840.01.T01:intron 40.0%
! TTTGACTGGAGCATCATCTA+TGG - Chr2:6999511-6999530 MsG0280006840.01.T01:intron 40.0%
!! TAATCGTAGATGGTGGACTA+TGG - Chr2:6998383-6998402 MsG0280006840.01.T01:intron 40.0%
!! TAGACTGCTTTTCAGGGTTA+TGG + Chr2:6997353-6997372 None:intergenic 40.0%
!! TATAGATATTGCTGGCTCTG+TGG - Chr2:6998427-6998446 MsG0280006840.01.T01:intron 40.0%
!!! CTGGAAGTCCTGTTTTTAGT+TGG - Chr2:6999147-6999166 MsG0280006840.01.T01:exon 40.0%
AACCAGCACACTGTTGAATG+TGG - Chr2:6997840-6997859 MsG0280006840.01.T01:intron 45.0%
AAGTGAGGAAACAGGACACA+AGG + Chr2:6998304-6998323 None:intergenic 45.0%
ACATAAAAGCCAACCCAGCA+AGG + Chr2:6997193-6997212 None:intergenic 45.0%
ACCCTGAAAAGCAGTCTACT+AGG - Chr2:6997355-6997374 MsG0280006840.01.T01:intron 45.0%
AGAAACACGGGATTCACACT+TGG - Chr2:6997581-6997600 MsG0280006840.01.T01:intron 45.0%
AGGTCAGACCCAAAACTCAT+TGG - Chr2:6998809-6998828 MsG0280006840.01.T01:intron 45.0%
ATTCATGGTCAGGCTTAGTG+GGG + Chr2:6997988-6998007 None:intergenic 45.0%
CAAAACTCATTGGGAGAGGA+TGG - Chr2:6998819-6998838 MsG0280006840.01.T01:intron 45.0%
CAATCATGTGTGCATGCCTA+AGG + Chr2:6999559-6999578 None:intergenic 45.0%
CAATTCATGGTCAGGCTTAG+TGG + Chr2:6997990-6998009 None:intergenic 45.0%
CATGCACACATGATTGAGAC+TGG - Chr2:6999563-6999582 MsG0280006840.01.T01:intron 45.0%
CCACCTCCAAAGAATAAGCA+AGG + Chr2:6999232-6999251 None:intergenic 45.0%
GAATGGGTCTTGCATGTGTA+AGG + Chr2:6998188-6998207 None:intergenic 45.0%
GCATGTGTAAGGCTCGTATA+AGG + Chr2:6998177-6998196 None:intergenic 45.0%
GGTATTATGCTGCAGTTGGA+TGG - Chr2:6999475-6999494 MsG0280006840.01.T01:intron 45.0%
GGTCAGACCCAAAACTCATT+GGG - Chr2:6998810-6998829 MsG0280006840.01.T01:intron 45.0%
GTCTCTTGCTTACAGTTCTC+TGG - Chr2:6999294-6999313 MsG0280006840.01.T01:intron 45.0%
TAGCTGTGAGTCCTCAAACT+TGG - Chr2:6998779-6998798 MsG0280006840.01.T01:intron 45.0%
TCATGCCTAAGTAAGCCCTA+AGG + Chr2:6998268-6998287 None:intergenic 45.0%
TTGTGTCCTGTTTCCTCACT+TGG - Chr2:6998303-6998322 MsG0280006840.01.T01:intron 45.0%
! AATTGGTGGCCCATGTTATC+AGG - Chr2:6999101-6999120 MsG0280006840.01.T01:intron 45.0%
! CAGTGATCTTCGAGTTTGAG+GGG + Chr2:6998353-6998372 None:intergenic 45.0%
! CATCCTCTCCCAATGAGTTT+TGG + Chr2:6998821-6998840 None:intergenic 45.0%
! CCTTGCTTATTCTTTGGAGG+TGG - Chr2:6999229-6999248 MsG0280006840.01.T01:intron 45.0%
! CTTTGAAGGCTCGAATCTGA+TGG + Chr2:6998565-6998584 None:intergenic 45.0%
! GACAGTGATCTTCGAGTTTG+AGG + Chr2:6998355-6998374 None:intergenic 45.0%
! TCGTATAAGGGGATAGTGGT+AGG + Chr2:6998164-6998183 None:intergenic 45.0%
! TCTAATCAGTCGTGATGGTG+GGG - Chr2:6999264-6999283 MsG0280006840.01.T01:intron 45.0%
! TGACTGGAGCATCATCTATG+GGG - Chr2:6999513-6999532 MsG0280006840.01.T01:intron 45.0%
!! GCCTAGTAGACTGCTTTTCA+GGG + Chr2:6997359-6997378 None:intergenic 45.0%
!! TGCCTAGTAGACTGCTTTTC+AGG + Chr2:6997360-6997379 None:intergenic 45.0%
AAGCCTGACCATGAATTGCC+TGG - Chr2:6997992-6998011 MsG0280006840.01.T01:intron 50.0%
AAGCGAGCCTTGACGATGAT+TGG - Chr2:6999648-6999667 MsG0280006840.01.T01:intron 50.0%
AATCATCGTCAAGGCTCGCT+TGG + Chr2:6999649-6999668 None:intergenic 50.0%
ACAGAGCTTGGCTCCATTAG+AGG - Chr2:6998068-6998087 MsG0280006840.01.T01:intron 50.0%
ACCTGAGACCTCCAAGTTTG+AGG + Chr2:6998793-6998812 None:intergenic 50.0%
AGCACATACATCAGAGCTGC+AGG + Chr2:6999199-6999218 None:intergenic 50.0%
AGCCTGACCATGAATTGCCT+GGG - Chr2:6997993-6998012 MsG0280006840.01.T01:intron 50.0%
AGGCTCGTATAAGGGGATAG+TGG + Chr2:6998168-6998187 None:intergenic 50.0%
ATCCCAGGCAATTCATGGTC+AGG + Chr2:6997998-6998017 None:intergenic 50.0%
CAAGAGAGAGATAGCTCCCA+TGG - Chr2:6996563-6996582 MsG0280006840.01.T01:three_prime_UTR 50.0%
CACACTTGGCACACAGAAGT+AGG - Chr2:6997595-6997614 MsG0280006840.01.T01:intron 50.0%
CATGGGAGCTATCTCTCTCT+TGG + Chr2:6996565-6996584 None:intergenic 50.0%
CTCATTGGGAGAGGATGGAT+AGG - Chr2:6998824-6998843 MsG0280006840.01.T01:intron 50.0%
CTCCCAAGTTAGTTAGCAGC+AGG + Chr2:6998210-6998229 None:intergenic 50.0%
CTGTGAGTCCTCAAACTTGG+AGG - Chr2:6998782-6998801 MsG0280006840.01.T01:intron 50.0%
GACCCAAAACTCATTGGGAG+AGG - Chr2:6998815-6998834 MsG0280006840.01.T01:intron 50.0%
TCCTCAAACTTGGAGGTCTC+AGG - Chr2:6998789-6998808 MsG0280006840.01.T01:intron 50.0%
TCCTGTGCATTCACAGAGCT+TGG - Chr2:6998056-6998075 MsG0280006840.01.T01:intron 50.0%
TGAGGAAACAGGACACAAGG+TGG + Chr2:6998301-6998320 None:intergenic 50.0%
TGCCACATTCAACAGTGTGC+TGG + Chr2:6997845-6997864 None:intergenic 50.0%
! TGCAGCTCTGATGTATGTGC+TGG - Chr2:6999198-6999217 MsG0280006840.01.T01:intron 50.0%
! TTGGGATGTGTAGCCTTGCT+GGG - Chr2:6997177-6997196 MsG0280006840.01.T01:intron 50.0%
! TTTGGGATGTGTAGCCTTGC+TGG - Chr2:6997176-6997195 MsG0280006840.01.T01:intron 50.0%
!! CTAATCAGTCGTGATGGTGG+GGG - Chr2:6999265-6999284 MsG0280006840.01.T01:intron 50.0%
!! TAATCAGTCGTGATGGTGGG+GGG - Chr2:6999266-6999285 MsG0280006840.01.T01:intron 50.0%
ACCGTGTACTGTCATCGCCA+TGG + Chr2:6996583-6996602 None:intergenic 55.0%
AGGGGTCTACCATCCACAGA+AGG + Chr2:6998335-6998354 None:intergenic 55.0%
CCCATGGCGATGACAGTACA+CGG - Chr2:6996579-6996598 MsG0280006840.01.T01:three_prime_UTR 55.0%
CCGTGTACTGTCATCGCCAT+GGG + Chr2:6996582-6996601 None:intergenic 55.0%
CGAAATTGCAGCCCAATCGC+AGG + Chr2:6997803-6997822 None:intergenic 55.0%
GCAGACACAAGCCTGCGATT+GGG - Chr2:6997789-6997808 MsG0280006840.01.T01:intron 55.0%
GCAGGCTTGTGTCTGCCTTT+AGG + Chr2:6997785-6997804 None:intergenic 55.0%
GCCAAGCTCTGTGAATGCAC+AGG + Chr2:6998060-6998079 None:intergenic 55.0%
! GATGTGTAGCCTTGCTGGGT+TGG - Chr2:6997181-6997200 MsG0280006840.01.T01:intron 55.0%
!! ATTGCTGGCTCTGTGGCCTA+TGG - Chr2:6998434-6998453 MsG0280006840.01.T01:intron 55.0%
!!! TGTCAATCGCGCCGCTTTTG+CGG + Chr2:6997918-6997937 None:intergenic 55.0%
CATCGTCAAGGCTCGCTTGG+TGG + Chr2:6999646-6999665 None:intergenic 60.0%
GCGATCACGGACTCGTGTAG+CGG + Chr2:6997895-6997914 None:intergenic 60.0%
GGCAGACACAAGCCTGCGAT+TGG - Chr2:6997788-6997807 MsG0280006840.01.T01:intron 60.0%
TCCGTGATCGCCCGCAAAAG+CGG - Chr2:6997904-6997923 MsG0280006840.01.T01:intron 60.0%
TGGCACGTAACTCGTCGCAG+TGG - Chr2:6997860-6997879 MsG0280006840.01.T01:intron 60.0%
!!! GTCAATCGCGCCGCTTTTGC+GGG + Chr2:6997917-6997936 None:intergenic 60.0%
GGACTCGTGTAGCGGCAGAG+AGG + Chr2:6997887-6997906 None:intergenic 65.0%
!!! GCCGCTTTTGCGGGCGATCA+CGG + Chr2:6997908-6997927 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 6996543 6999823 6996543 ID=MsG0280006840.01;Name=MsG0280006840.01
Chr2 mRNA 6996543 6999823 6996543 ID=MsG0280006840.01.T01;Parent=MsG0280006840.01;Name=MsG0280006840.01.T01;_AED=0.50;_eAED=0.50;_QI=77|1|1|1|0|0|5|150|113
Chr2 exon 6999125 6999176 6999125 ID=MsG0280006840.01.T01:exon:2079;Parent=MsG0280006840.01.T01
Chr2 exon 6999766 6999823 6999766 ID=MsG0280006840.01.T01:exon:2078;Parent=MsG0280006840.01.T01
Chr2 five_prime_UTR 6999766 6999823 6999766 ID=MsG0280006840.01.T01:five_prime_utr;Parent=MsG0280006840.01.T01
Chr2 five_prime_UTR 6999158 6999176 6999158 ID=MsG0280006840.01.T01:five_prime_utr;Parent=MsG0280006840.01.T01
Chr2 CDS 6999125 6999157 6999125 ID=MsG0280006840.01.T01:cds;Parent=MsG0280006840.01.T01
Chr2 CDS 6997244 6997283 6997244 ID=MsG0280006840.01.T01:cds;Parent=MsG0280006840.01.T01
Chr2 CDS 6997079 6997163 6997079 ID=MsG0280006840.01.T01:cds;Parent=MsG0280006840.01.T01
Chr2 CDS 6996693 6996876 6996693 ID=MsG0280006840.01.T01:cds;Parent=MsG0280006840.01.T01
Chr2 three_prime_UTR 6996543 6996692 6996543 ID=MsG0280006840.01.T01:three_prime_utr;Parent=MsG0280006840.01.T01
Chr2 mRNA 6996543 6999184 6996543 ID=MsG0280006840.01.T02;Parent=MsG0280006840.01;Name=MsG0280006840.01.T02;_AED=0.50;_eAED=0.50;_QI=0|0.66|0.5|1|0|0|4|150|130
Chr2 exon 6997244 6997307 6997244 ID=MsG0280006840.01.T02:exon:2084;Parent=MsG0280006840.01.T02
Chr2 CDS 6999125 6999184 6999125 ID=MsG0280006840.01.T02:cds;Parent=MsG0280006840.01.T02
Chr2 CDS 6997244 6997307 6997244 ID=MsG0280006840.01.T02:cds;Parent=MsG0280006840.01.T02
Chr2 CDS 6997079 6997163 6997079 ID=MsG0280006840.01.T02:cds;Parent=MsG0280006840.01.T02
Chr2 CDS 6996693 6996876 6996693 ID=MsG0280006840.01.T02:cds;Parent=MsG0280006840.01.T02
Chr2 three_prime_UTR 6996543 6996692 6996543 ID=MsG0280006840.01.T02:three_prime_utr;Parent=MsG0280006840.01.T02
Chr2 mRNA 6996543 6999184 6996543 ID=MsG0280006840.01.T03;Parent=MsG0280006840.01;Name=MsG0280006840.01.T03;_AED=0.50;_eAED=0.50;_QI=0|1|0.75|1|0|0|4|150|122
Chr2 CDS 6999125 6999184 6999125 ID=MsG0280006840.01.T03:cds;Parent=MsG0280006840.01.T03
Chr2 CDS 6997244 6997283 6997244 ID=MsG0280006840.01.T03:cds;Parent=MsG0280006840.01.T03
Chr2 CDS 6997079 6997163 6997079 ID=MsG0280006840.01.T03:cds;Parent=MsG0280006840.01.T03
Chr2 CDS 6996693 6996876 6996693 ID=MsG0280006840.01.T03:cds;Parent=MsG0280006840.01.T03
Chr2 three_prime_UTR 6996543 6996692 6996543 ID=MsG0280006840.01.T03:three_prime_utr;Parent=MsG0280006840.01.T03
Gene Sequence

>MsG0280006840.01.T03

ATGTGTAGCCTTGCTGGGTTGGCTTTTATGTTTTCTTCTAGCATTTTGCTACAGATTCTGGCATGTGCAATATACAACAATTGGTGGCCCATGTTATCAGCTCTGATGTATGTGCTGGTACCTATGCCTTGCTTATTCTTTGGAGGTGGGTCCACTCAATTTCTAATCAGTCGTGATGGTGGGGGTTGGATGGATGCTGCAAAGTTTTTGACTGGAGCATCATCTATGGGGAGCATAGCCATTCCTATAATCCTTAGGCATGCACACATGATTGAGACTGGAGCAATGCTCATTGAGCTTGTATCGTTCTTCATATTTATATGTACTGTTATGTGTTTCCACCAAGCGAGCCTTGACGATGATTGGTAA

>MsG0280006840.01.T01

ATGTTTTCTTCTAGCATTTTGCTACAGATTCTGGCATGTGCAATATACAACAATTGGTGGCCCATGTTATCAGCTCTGATGTATGTGCTGGTACCTATGCCTTGCTTATTCTTTGGAGGTGGGTCCACTCAATTTCTAATCAGTCGTGATGGTGGGGGTTGGATGGATGCTGCAAAGTTTTTGACTGGAGCATCATCTATGGGGAGCATAGCCATTCCTATAATCCTTAGGCATGCACACATGATTGAGACTGGAGCAATGCTCATTGAGCTTGTATCGTTCTTCATATTTATATGTACTGTTATGTGTTTCCACCAAGCGAGCCTTGACGATGATTGGTAA

>MsG0280006840.01.T02

ATGTGTAGCCTTGCTGGGTTGGCTTTTATGTTTTCTTCTAGCATTTTGCTACAGATTCTGTTTGCTTTCTTTTTGATATGGCAGGCATGTGCAATATACAACAATTGGTGGCCCATGTTATCAGCTCTGATGTATGTGCTGGTACCTATGCCTTGCTTATTCTTTGGAGGTGGGTCCACTCAATTTCTAATCAGTCGTGATGGTGGGGGTTGGATGGATGCTGCAAAGTTTTTGACTGGAGCATCATCTATGGGGAGCATAGCCATTCCTATAATCCTTAGGCATGCACACATGATTGAGACTGGAGCAATGCTCATTGAGCTTGTATCGTTCTTCATATTTATATGTACTGTTATGTGTTTCCACCAAGCGAGCCTTGACGATGATTGGTAA
Protein sequence

>MsG0280006840.01.T03

MCSLAGLAFMFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWMDAAKFLTGASSMGSIAIPIILRHAHMIETGAMLIELVSFFIFICTVMCFHQASLDDDW*

>MsG0280006840.01.T01

MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWMDAAKFLTGASSMGSIAIPIILRHAHMIETGAMLIELVSFFIFICTVMCFHQASLDDDW*

>MsG0280006840.01.T02

MCSLAGLAFMFSSSILLQILFAFFLIWQACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWMDAAKFLTGASSMGSIAIPIILRHAHMIETGAMLIELVSFFIFICTVMCFHQASLDDDW*