Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041333.01.T01 | XP_003625933.2 | 99.357 | 311 | 2 | 0 | 1 | 311 | 325 | 635 | 0 | 640 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041333.01.T01 | Q9M7M1 | 69.565 | 299 | 91 | 0 | 1 | 299 | 324 | 622 | 3.54E-140 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041333.01.T01 | G7KSQ0 | 99.357 | 311 | 2 | 0 | 1 | 311 | 325 | 635 | 0.0 | 640 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0780040481.01 | MsG0780041333.01 | 0.812207 | 4.760609e-51 | 3.008194e-48 |
| MsG0780041333.01 | MsG0880046713.01 | 0.807031 | 6.165897e-50 | 3.398150e-47 |
| MsG0780039702.01 | MsG0780041333.01 | 0.824805 | 6.616528e-54 | 5.923421e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041333.01.T01 | MTR_7g109150 | 99.357 | 311 | 2 | 0 | 1 | 311 | 325 | 635 | 0.0 | 640 |
| MsG0780041333.01.T01 | MTR_4g031150 | 66.890 | 299 | 99 | 0 | 1 | 299 | 374 | 672 | 3.03e-137 | 407 |
| MsG0780041333.01.T01 | MTR_5g022470 | 33.333 | 258 | 146 | 4 | 10 | 243 | 499 | 754 | 5.37e-37 | 140 |
| MsG0780041333.01.T01 | MTR_5g022470 | 33.333 | 258 | 146 | 4 | 10 | 243 | 499 | 754 | 6.10e-37 | 140 |
| MsG0780041333.01.T01 | MTR_3g105590 | 32.414 | 290 | 152 | 6 | 25 | 273 | 375 | 661 | 1.04e-35 | 137 |
| MsG0780041333.01.T01 | MTR_1g079790 | 31.788 | 302 | 191 | 6 | 2 | 299 | 353 | 643 | 1.72e-35 | 136 |
| MsG0780041333.01.T01 | MTR_1g073840 | 33.708 | 267 | 164 | 5 | 2 | 262 | 347 | 606 | 2.42e-35 | 135 |
| MsG0780041333.01.T01 | MTR_8g080770 | 30.357 | 280 | 162 | 4 | 11 | 258 | 274 | 552 | 2.58e-34 | 132 |
| MsG0780041333.01.T01 | MTR_8g080770 | 30.357 | 280 | 162 | 4 | 11 | 258 | 383 | 661 | 4.16e-34 | 132 |
| MsG0780041333.01.T01 | MTR_8g075340 | 31.641 | 256 | 153 | 3 | 10 | 243 | 461 | 716 | 6.12e-34 | 132 |
| MsG0780041333.01.T01 | MTR_7g116330 | 31.293 | 294 | 166 | 6 | 2 | 274 | 357 | 635 | 9.52e-34 | 131 |
| MsG0780041333.01.T01 | MTR_3g085130 | 28.289 | 304 | 178 | 5 | 11 | 278 | 228 | 527 | 2.19e-33 | 130 |
| MsG0780041333.01.T01 | MTR_3g085130 | 28.289 | 304 | 178 | 5 | 11 | 278 | 438 | 737 | 3.47e-33 | 129 |
| MsG0780041333.01.T01 | MTR_8g106150 | 31.148 | 305 | 155 | 6 | 14 | 264 | 134 | 437 | 1.87e-31 | 124 |
| MsG0780041333.01.T01 | MTR_8g106150 | 31.148 | 305 | 155 | 6 | 14 | 264 | 377 | 680 | 3.28e-31 | 124 |
| MsG0780041333.01.T01 | MTR_5g097410 | 30.389 | 283 | 158 | 5 | 14 | 258 | 611 | 892 | 8.43e-31 | 122 |
| MsG0780041333.01.T01 | MTR_1g079790 | 31.356 | 236 | 160 | 2 | 2 | 237 | 353 | 586 | 2.44e-29 | 118 |
| MsG0780041333.01.T01 | MTR_1g044210 | 29.317 | 249 | 164 | 4 | 2 | 243 | 346 | 589 | 1.18e-24 | 104 |
| MsG0780041333.01.T01 | MTR_1g013360 | 37.241 | 145 | 87 | 3 | 24 | 167 | 380 | 521 | 4.31e-22 | 97.1 |
| MsG0780041333.01.T01 | MTR_1g013360 | 38.393 | 112 | 64 | 3 | 160 | 268 | 585 | 694 | 4.71e-13 | 70.1 |
| MsG0780041333.01.T01 | MTR_1g087140 | 28.197 | 305 | 164 | 11 | 10 | 267 | 379 | 675 | 4.60e-19 | 88.2 |
| MsG0780041333.01.T01 | MTR_1g090850 | 26.875 | 320 | 181 | 11 | 10 | 287 | 368 | 676 | 5.43e-18 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041333.01.T01 | AT2G40940 | 71.587 | 271 | 77 | 0 | 1 | 271 | 324 | 594 | 4.64e-129 | 381 |
| MsG0780041333.01.T01 | AT1G66340 | 64.214 | 299 | 103 | 1 | 1 | 299 | 324 | 618 | 3.52e-126 | 377 |
| MsG0780041333.01.T01 | AT5G10720 | 33.910 | 289 | 167 | 7 | 24 | 295 | 370 | 651 | 3.43e-41 | 152 |
| MsG0780041333.01.T01 | AT1G27320 | 31.786 | 280 | 156 | 5 | 11 | 258 | 441 | 717 | 1.19e-36 | 139 |
| MsG0780041333.01.T01 | AT2G17820 | 32.422 | 256 | 151 | 3 | 10 | 243 | 488 | 743 | 1.85e-36 | 139 |
| MsG0780041333.01.T01 | AT5G35750 | 30.717 | 293 | 162 | 7 | 14 | 269 | 581 | 869 | 2.18e-32 | 127 |
| MsG0780041333.01.T01 | AT2G01830 | 29.545 | 308 | 165 | 5 | 14 | 273 | 443 | 746 | 4.45e-32 | 126 |
| MsG0780041333.01.T01 | AT2G01830 | 29.545 | 308 | 165 | 5 | 14 | 273 | 443 | 746 | 4.45e-32 | 126 |
| MsG0780041333.01.T01 | AT2G01830 | 29.545 | 308 | 165 | 5 | 14 | 273 | 443 | 746 | 4.45e-32 | 126 |
| MsG0780041333.01.T01 | AT2G01830 | 29.545 | 308 | 165 | 5 | 14 | 273 | 443 | 746 | 4.45e-32 | 126 |
| MsG0780041333.01.T01 | AT2G01830 | 29.545 | 308 | 165 | 5 | 14 | 273 | 455 | 758 | 4.77e-32 | 126 |
| MsG0780041333.01.T01 | AT2G01830 | 29.545 | 308 | 165 | 5 | 14 | 273 | 466 | 769 | 4.97e-32 | 126 |
| MsG0780041333.01.T01 | AT3G23150 | 32.031 | 256 | 151 | 7 | 2 | 243 | 349 | 595 | 6.96e-29 | 117 |
| MsG0780041333.01.T01 | AT3G04580 | 27.922 | 308 | 204 | 7 | 3 | 299 | 350 | 650 | 6.12e-28 | 114 |
| MsG0780041333.01.T01 | AT3G04580 | 27.922 | 308 | 204 | 7 | 3 | 299 | 350 | 650 | 6.12e-28 | 114 |
| MsG0780041333.01.T01 | AT3G23150 | 31.474 | 251 | 149 | 7 | 2 | 238 | 349 | 590 | 1.52e-27 | 112 |
| MsG0780041333.01.T01 | AT2G47430 | 27.491 | 291 | 167 | 10 | 10 | 262 | 385 | 669 | 9.96e-17 | 81.3 |
| MsG0780041333.01.T01 | AT4G16250 | 23.984 | 246 | 160 | 8 | 2 | 243 | 914 | 1136 | 1.46e-12 | 68.9 |
Find 69 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTGCAGGTTAAGGATTC+TGG | 0.190806 | 7:-89699086 | MsG0780041333.01.T01:intron |
| AATCAACCTTCATGGTGTTT+TGG | 0.215357 | 7:-89699705 | MsG0780041333.01.T01:CDS |
| AGCATTGTCATCACTTCTTT+TGG | 0.253771 | 7:-89699864 | MsG0780041333.01.T01:CDS |
| CGCCAATCCTGTAAGGATTC+TGG | 0.273695 | 7:+89699396 | None:intergenic |
| TTGGACTAGCTATTTGTAAA+AGG | 0.274567 | 7:-89698971 | MsG0780041333.01.T01:intron |
| TGCAAAACCAGAATCCTTAC+AGG | 0.315260 | 7:-89699403 | MsG0780041333.01.T01:CDS |
| ATCTCATGGGTGGGCACATA+TGG | 0.329280 | 7:-89698806 | MsG0780041333.01.T01:CDS |
| TCTAGCAGTGGTTCAGGTCT+TGG | 0.350863 | 7:-89698990 | MsG0780041333.01.T01:CDS |
| ATTGAAGAGTAGTAATGTTT+TGG | 0.359573 | 7:-89699798 | MsG0780041333.01.T01:CDS |
| GAGAGCGAGGGTCACGATAA+AGG | 0.377013 | 7:-89698780 | MsG0780041333.01.T01:CDS |
| CTCTCGCCGAGCTAAATCTA+AGG | 0.393829 | 7:+89699967 | None:intergenic |
| ATGGCATGAGTAGGTAGATC+AGG | 0.413426 | 7:+89699522 | None:intergenic |
| GTTCGATCTAGCAGTGGTTC+AGG | 0.425531 | 7:-89698996 | MsG0780041333.01.T01:CDS |
| CTCCACTTCCACTATATGCT+TGG | 0.434484 | 7:+89698679 | None:intergenic |
| GGGGCAAGAATTAAAGTAAT+GGG | 0.436802 | 7:+89699543 | None:intergenic |
| AGCTCGGCGAGAGGCTGAAA+TGG | 0.447274 | 7:-89699957 | MsG0780041333.01.T01:CDS |
| GCTACATTTGTAGTCAAACT+TGG | 0.452125 | 7:-89698750 | MsG0780041333.01.T01:CDS |
| GGCCAAGCATATAGTGGAAG+TGG | 0.455936 | 7:-89698681 | MsG0780041333.01.T01:CDS |
| ATTCAGATTTGTAAATCTCA+TGG | 0.457675 | 7:-89698820 | MsG0780041333.01.T01:intron |
| AGCAGAGGCCAAGCATATAG+TGG | 0.467264 | 7:-89698687 | MsG0780041333.01.T01:CDS |
| TGGTAGCCTTGAATTAGAAA+TGG | 0.472836 | 7:-89699732 | MsG0780041333.01.T01:CDS |
| GTAGTCAAACTTGGGATTTG+TGG | 0.473180 | 7:-89698741 | MsG0780041333.01.T01:CDS |
| TCTATCATAACCCTCTGCTC+TGG | 0.492566 | 7:+89699827 | None:intergenic |
| GAACCACTGCTAGATCGAAC+AGG | 0.510532 | 7:+89698999 | None:intergenic |
| AACCAGAATCCTTACAGGAT+TGG | 0.521860 | 7:-89699398 | MsG0780041333.01.T01:CDS |
| TTCAGATTTGTAAATCTCAT+GGG | 0.524035 | 7:-89698819 | MsG0780041333.01.T01:intron |
| TCTGCTTGCAGCTTGATGAT+CGG | 0.525516 | 7:+89698704 | None:intergenic |
| AGGAGGTCGCCAATCCTGTA+AGG | 0.525729 | 7:+89699389 | None:intergenic |
| AAATGACCATCACTTGATGC+TGG | 0.529879 | 7:+89699357 | None:intergenic |
| CTACATTTGTAGTCAAACTT+GGG | 0.530312 | 7:-89698749 | MsG0780041333.01.T01:CDS |
| GATCTGTCCCGACTGGAAGA+TGG | 0.542916 | 7:-89699752 | MsG0780041333.01.T01:CDS |
| TTACTCAATGATGACGACAT+AGG | 0.543430 | 7:-89698636 | MsG0780041333.01.T01:CDS |
| AGGGGCAAGAATTAAAGTAA+TGG | 0.544261 | 7:+89699542 | None:intergenic |
| ACTCTGAGACTGAGTAAACT+TGG | 0.544636 | 7:+89699025 | None:intergenic |
| TCATTTCTATATACGAGTCC+AGG | 0.548157 | 7:-89699340 | MsG0780041333.01.T01:intron |
| CAATGCTGTCAAATATACTA+AGG | 0.548729 | 7:-89699454 | MsG0780041333.01.T01:CDS |
| CATGGGTGGGCACATATGGA+TGG | 0.549664 | 7:-89698802 | MsG0780041333.01.T01:CDS |
| CTGAACTGAATCCAGAGCAG+AGG | 0.550673 | 7:-89699838 | MsG0780041333.01.T01:CDS |
| AAGGCTACCATCTTCCAGTC+GGG | 0.554665 | 7:+89699745 | None:intergenic |
| CTTGATGCTGGATAAAACTC+AGG | 0.561674 | 7:+89699369 | None:intergenic |
| CAGGTTAAGGATTCTGGATG+TGG | 0.561926 | 7:-89699080 | MsG0780041333.01.T01:CDS |
| CTTGCAGCTTGATGATCGGA+TGG | 0.567335 | 7:+89698708 | None:intergenic |
| TGGCATGAGTAGGTAGATCA+GGG | 0.573826 | 7:+89699523 | None:intergenic |
| AGATTTGTAAATCTCATGGG+TGG | 0.574861 | 7:-89698816 | MsG0780041333.01.T01:CDS |
| ACGTTGCCTTAGATTTAGCT+CGG | 0.574999 | 7:-89699973 | MsG0780041333.01.T01:CDS |
| TGCTGTCAAATATACTAAGG+AGG | 0.577420 | 7:-89699451 | MsG0780041333.01.T01:CDS |
| GCTGTCAAATATACTAAGGA+GGG | 0.577474 | 7:-89699450 | MsG0780041333.01.T01:CDS |
| GTAAACTTGGTAAAGAGATG+TGG | 0.583173 | 7:+89699038 | None:intergenic |
| TGTTCTAGATCTGTCCCGAC+TGG | 0.586169 | 7:-89699759 | MsG0780041333.01.T01:CDS |
| TTTCATGATTCATGACTGCA+AGG | 0.589191 | 7:+89699912 | None:intergenic |
| GATTTGTAAATCTCATGGGT+GGG | 0.596709 | 7:-89698815 | MsG0780041333.01.T01:CDS |
| GTAAGTGCTTAAATCTAGCA+AGG | 0.598885 | 7:+89698655 | None:intergenic |
| CAAGGCTACCATCTTCCAGT+CGG | 0.599285 | 7:+89699744 | None:intergenic |
| GCACATATGGATGGAGAGCG+AGG | 0.610844 | 7:-89698793 | MsG0780041333.01.T01:CDS |
| TGAACTGAATCCAGAGCAGA+GGG | 0.614850 | 7:-89699837 | MsG0780041333.01.T01:CDS |
| AAGAGATGTGGAATATCTTG+TGG | 0.615014 | 7:+89699050 | None:intergenic |
| TCATCACCGATGGCATGAGT+AGG | 0.616501 | 7:+89699513 | None:intergenic |
| CTTAGATTTAGCTCGGCGAG+AGG | 0.619358 | 7:-89699966 | MsG0780041333.01.T01:CDS |
| GATCATCAAGCTGCAAGCAG+AGG | 0.631663 | 7:-89698702 | MsG0780041333.01.T01:CDS |
| CAAGCATATAGTGGAAGTGG+AGG | 0.635632 | 7:-89698678 | MsG0780041333.01.T01:CDS |
| ATGCCATCGGTGATGAAAAG+CGG | 0.635694 | 7:-89699506 | MsG0780041333.01.T01:CDS |
| GATCTACCTACTCATGCCAT+CGG | 0.647848 | 7:-89699519 | MsG0780041333.01.T01:CDS |
| CCTCTCCCAAAACACCATGA+AGG | 0.651300 | 7:+89699699 | None:intergenic |
| CACATATGGATGGAGAGCGA+GGG | 0.654671 | 7:-89698792 | MsG0780041333.01.T01:CDS |
| GGACCTGTTCGATCTAGCAG+TGG | 0.657911 | 7:-89699002 | MsG0780041333.01.T01:CDS |
| GATGCTGGATAAAACTCAGG+AGG | 0.685050 | 7:+89699372 | None:intergenic |
| AATGCTATAATTGCATGCAT+CGG | 0.690508 | 7:+89699881 | None:intergenic |
| GGCATGAGTAGGTAGATCAG+GGG | 0.696928 | 7:+89699524 | None:intergenic |
| AAGTTTACTCAGTCTCAGAG+TGG | 0.708425 | 7:-89699023 | MsG0780041333.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCAATCACATTAACATA+TGG | + | Chr7:89699307-89699326 | None:intergenic | 20.0% |
| !! | TTAATATGCATTTCACATAA+GGG | + | Chr7:89699689-89699708 | None:intergenic | 20.0% |
| ! | AAGTCGATAACATAATGAAA+AGG | + | Chr7:89699407-89699426 | None:intergenic | 25.0% |
| ! | ATTCAGATTTGTAAATCTCA+TGG | - | Chr7:89699765-89699784 | MsG0780041333.01.T01:CDS | 25.0% |
| ! | CAACTGTTAGAAATTAATCT+AGG | - | Chr7:89699437-89699456 | MsG0780041333.01.T01:CDS | 25.0% |
| ! | GTTAATATGCATTTCACATA+AGG | + | Chr7:89699690-89699709 | None:intergenic | 25.0% |
| ! | GTTAATGTGATTGAATTCTT+GGG | - | Chr7:89699310-89699329 | MsG0780041333.01.T01:intron | 25.0% |
| ! | TGTTAATGTGATTGAATTCT+TGG | - | Chr7:89699309-89699328 | MsG0780041333.01.T01:intron | 25.0% |
| ! | TTCAGATTTGTAAATCTCAT+GGG | - | Chr7:89699766-89699785 | MsG0780041333.01.T01:CDS | 25.0% |
| !! | ATTGAAGAGTAGTAATGTTT+TGG | - | Chr7:89698787-89698806 | MsG0780041333.01.T01:CDS | 25.0% |
| !!! | TTTTTGCCATTTCTAATTCA+AGG | + | Chr7:89698862-89698881 | None:intergenic | 25.0% |
| AATGCTATAATTGCATGCAT+CGG | + | Chr7:89698707-89698726 | None:intergenic | 30.0% | |
| ACTAGCTATTTGTAAAAGGT+AGG | - | Chr7:89699618-89699637 | MsG0780041333.01.T01:intron | 30.0% | |
| ATTTCACATAAGGGCAATAA+TGG | + | Chr7:89699680-89699699 | None:intergenic | 30.0% | |
| CAATACATAAATGCTGTTCA+TGG | + | Chr7:89698960-89698979 | None:intergenic | 30.0% | |
| CAATGCTGTCAAATATACTA+AGG | - | Chr7:89699131-89699150 | MsG0780041333.01.T01:intron | 30.0% | |
| CTACATTTGTAGTCAAACTT+GGG | - | Chr7:89699836-89699855 | MsG0780041333.01.T01:CDS | 30.0% | |
| CTAGCTATTTGTAAAAGGTA+GGG | - | Chr7:89699619-89699638 | MsG0780041333.01.T01:intron | 30.0% | |
| GAAAAGGTAGAGATATCTTT+GGG | + | Chr7:89699391-89699410 | None:intergenic | 30.0% | |
| TGAAAAGGTAGAGATATCTT+TGG | + | Chr7:89699392-89699411 | None:intergenic | 30.0% | |
| ! | TGCTTTTCTATTGTTAATGC+AGG | - | Chr7:89698978-89698997 | MsG0780041333.01.T01:CDS | 30.0% |
| !! | TTGGACTAGCTATTTGTAAA+AGG | - | Chr7:89699614-89699633 | MsG0780041333.01.T01:intron | 30.0% |
| !!! | AGTTTTTTCACAGATGCTAT+AGG | + | Chr7:89699021-89699040 | None:intergenic | 30.0% |
| AAGAGATGTGGAATATCTTG+TGG | + | Chr7:89699538-89699557 | None:intergenic | 35.0% | |
| AGATTTGTAAATCTCATGGG+TGG | - | Chr7:89699769-89699788 | MsG0780041333.01.T01:CDS | 35.0% | |
| AGGGGCAAGAATTAAAGTAA+TGG | + | Chr7:89699046-89699065 | None:intergenic | 35.0% | |
| ATGGCAAAAATCAACCTTCA+TGG | - | Chr7:89698872-89698891 | MsG0780041333.01.T01:intron | 35.0% | |
| CTTTCCTAGAAATGTAGGTA+TGG | + | Chr7:89699366-89699385 | None:intergenic | 35.0% | |
| GATTTGTAAATCTCATGGGT+GGG | - | Chr7:89699770-89699789 | MsG0780041333.01.T01:CDS | 35.0% | |
| GCTACATTTGTAGTCAAACT+TGG | - | Chr7:89699835-89699854 | MsG0780041333.01.T01:CDS | 35.0% | |
| GCTGTCAAATATACTAAGGA+GGG | - | Chr7:89699135-89699154 | MsG0780041333.01.T01:intron | 35.0% | |
| GGGGCAAGAATTAAAGTAAT+GGG | + | Chr7:89699045-89699064 | None:intergenic | 35.0% | |
| GTAAACTTGGTAAAGAGATG+TGG | + | Chr7:89699550-89699569 | None:intergenic | 35.0% | |
| GTAAGTGCTTAAATCTAGCA+AGG | + | Chr7:89699933-89699952 | None:intergenic | 35.0% | |
| TCATCCATACCTACATTTCT+AGG | - | Chr7:89699359-89699378 | MsG0780041333.01.T01:CDS | 35.0% | |
| TCATTTCTATATACGAGTCC+AGG | - | Chr7:89699245-89699264 | MsG0780041333.01.T01:intron | 35.0% | |
| TGCTGTCAAATATACTAAGG+AGG | - | Chr7:89699134-89699153 | MsG0780041333.01.T01:intron | 35.0% | |
| TTTCATGATTCATGACTGCA+AGG | + | Chr7:89698676-89698695 | None:intergenic | 35.0% | |
| ! | AATCAACCTTCATGGTGTTT+TGG | - | Chr7:89698880-89698899 | MsG0780041333.01.T01:intron | 35.0% |
| ! | AGCATTGTCATCACTTCTTT+TGG | - | Chr7:89698721-89698740 | MsG0780041333.01.T01:CDS | 35.0% |
| ! | ATCAACCTTCATGGTGTTTT+GGG | - | Chr7:89698881-89698900 | MsG0780041333.01.T01:intron | 35.0% |
| ! | CAGACACTTTTGAATGTTGT+GGG | - | Chr7:89699108-89699127 | MsG0780041333.01.T01:intron | 35.0% |
| ! | TGGTAGCCTTGAATTAGAAA+TGG | - | Chr7:89698853-89698872 | MsG0780041333.01.T01:intron | 35.0% |
| ! | TTACTCAATGATGACGACAT+AGG | - | Chr7:89699949-89699968 | MsG0780041333.01.T01:CDS | 35.0% |
| ! | TTTTATCCAGCATCAAGTGA+TGG | - | Chr7:89699222-89699241 | MsG0780041333.01.T01:intron | 35.0% |
| AAATGACCATCACTTGATGC+TGG | + | Chr7:89699231-89699250 | None:intergenic | 40.0% | |
| AACCAGAATCCTTACAGGAT+TGG | - | Chr7:89699187-89699206 | MsG0780041333.01.T01:intron | 40.0% | |
| AAGTTTACTCAGTCTCAGAG+TGG | - | Chr7:89699562-89699581 | MsG0780041333.01.T01:CDS | 40.0% | |
| ACGTTGCCTTAGATTTAGCT+CGG | - | Chr7:89698612-89698631 | MsG0780041333.01.T01:CDS | 40.0% | |
| ATCCTTAACCTGCACAAAGA+AGG | + | Chr7:89699497-89699516 | None:intergenic | 40.0% | |
| ATCCTTCTTTGTGCAGGTTA+AGG | - | Chr7:89699492-89699511 | MsG0780041333.01.T01:CDS | 40.0% | |
| CTGCACAAAGAAGGATGTTT+GGG | + | Chr7:89699488-89699507 | None:intergenic | 40.0% | |
| CTTGATGCTGGATAAAACTC+AGG | + | Chr7:89699219-89699238 | None:intergenic | 40.0% | |
| GTAGTCAAACTTGGGATTTG+TGG | - | Chr7:89699844-89699863 | MsG0780041333.01.T01:CDS | 40.0% | |
| TGCAAAACCAGAATCCTTAC+AGG | - | Chr7:89699182-89699201 | MsG0780041333.01.T01:intron | 40.0% | |
| TGCACAAAGAAGGATGTTTG+GGG | + | Chr7:89699487-89699506 | None:intergenic | 40.0% | |
| TTTGTGCAGGTTAAGGATTC+TGG | - | Chr7:89699499-89699518 | MsG0780041333.01.T01:CDS | 40.0% | |
| ! | GCAGACACTTTTGAATGTTG+TGG | - | Chr7:89699107-89699126 | MsG0780041333.01.T01:intron | 40.0% |
| !! | ACTCTGAGACTGAGTAAACT+TGG | + | Chr7:89699563-89699582 | None:intergenic | 40.0% |
| ACGAGTCCAGGTTATGACTT+TGG | - | Chr7:89699257-89699276 | MsG0780041333.01.T01:intron | 45.0% | |
| ATGCCATCGGTGATGAAAAG+CGG | - | Chr7:89699079-89699098 | MsG0780041333.01.T01:CDS | 45.0% | |
| ATGGCATGAGTAGGTAGATC+AGG | + | Chr7:89699066-89699085 | None:intergenic | 45.0% | |
| CAGGTTAAGGATTCTGGATG+TGG | - | Chr7:89699505-89699524 | MsG0780041333.01.T01:CDS | 45.0% | |
| CCAAACATCCTTCTTTGTGC+AGG | - | Chr7:89699486-89699505 | MsG0780041333.01.T01:CDS | 45.0% | |
| CCTGCACAAAGAAGGATGTT+TGG | + | Chr7:89699489-89699508 | None:intergenic | 45.0% | |
| CTCCACTTCCACTATATGCT+TGG | + | Chr7:89699909-89699928 | None:intergenic | 45.0% | |
| GAGATGCCAAAGTCATAACC+TGG | + | Chr7:89699266-89699285 | None:intergenic | 45.0% | |
| GATCTACCTACTCATGCCAT+CGG | - | Chr7:89699066-89699085 | MsG0780041333.01.T01:CDS | 45.0% | |
| GATGCTGGATAAAACTCAGG+AGG | + | Chr7:89699216-89699235 | None:intergenic | 45.0% | |
| GGGCTCTTTCCTAGAAATGT+AGG | + | Chr7:89699371-89699390 | None:intergenic | 45.0% | |
| TCTATCATAACCCTCTGCTC+TGG | + | Chr7:89698761-89698780 | None:intergenic | 45.0% | |
| TGAACTGAATCCAGAGCAGA+GGG | - | Chr7:89698748-89698767 | MsG0780041333.01.T01:CDS | 45.0% | |
| TGGCATGAGTAGGTAGATCA+GGG | + | Chr7:89699065-89699084 | None:intergenic | 45.0% | |
| ! | CAAGCATATAGTGGAAGTGG+AGG | - | Chr7:89699907-89699926 | MsG0780041333.01.T01:CDS | 45.0% |
| ! | TCTGCTTGCAGCTTGATGAT+CGG | + | Chr7:89699884-89699903 | None:intergenic | 45.0% |
| !! | GGCAATAATGGTGACTTGCT+AGG | + | Chr7:89699668-89699687 | None:intergenic | 45.0% |
| AAGGCTACCATCTTCCAGTC+GGG | + | Chr7:89698843-89698862 | None:intergenic | 50.0% | |
| AGCAGAGGCCAAGCATATAG+TGG | - | Chr7:89699898-89699917 | MsG0780041333.01.T01:CDS | 50.0% | |
| ATCTCATGGGTGGGCACATA+TGG | - | Chr7:89699779-89699798 | MsG0780041333.01.T01:CDS | 50.0% | |
| CAAGGCTACCATCTTCCAGT+CGG | + | Chr7:89698844-89698863 | None:intergenic | 50.0% | |
| CACATATGGATGGAGAGCGA+GGG | - | Chr7:89699793-89699812 | MsG0780041333.01.T01:CDS | 50.0% | |
| CCTCTCCCAAAACACCATGA+AGG | + | Chr7:89698889-89698908 | None:intergenic | 50.0% | |
| CGCCAATCCTGTAAGGATTC+TGG | + | Chr7:89699192-89699211 | None:intergenic | 50.0% | |
| CTCTCGCCGAGCTAAATCTA+AGG | + | Chr7:89698621-89698640 | None:intergenic | 50.0% | |
| CTGAACTGAATCCAGAGCAG+AGG | - | Chr7:89698747-89698766 | MsG0780041333.01.T01:CDS | 50.0% | |
| GAACCACTGCTAGATCGAAC+AGG | + | Chr7:89699589-89699608 | None:intergenic | 50.0% | |
| GATCATCAAGCTGCAAGCAG+AGG | - | Chr7:89699883-89699902 | MsG0780041333.01.T01:CDS | 50.0% | |
| GGCATGAGTAGGTAGATCAG+GGG | + | Chr7:89699064-89699083 | None:intergenic | 50.0% | |
| GTTCGATCTAGCAGTGGTTC+AGG | - | Chr7:89699589-89699608 | MsG0780041333.01.T01:intron | 50.0% | |
| TCATCACCGATGGCATGAGT+AGG | + | Chr7:89699075-89699094 | None:intergenic | 50.0% | |
| TCTAGCAGTGGTTCAGGTCT+TGG | - | Chr7:89699595-89699614 | MsG0780041333.01.T01:intron | 50.0% | |
| ! | CTTAGATTTAGCTCGGCGAG+AGG | - | Chr7:89698619-89698638 | MsG0780041333.01.T01:CDS | 50.0% |
| ! | CTTGCAGCTTGATGATCGGA+TGG | + | Chr7:89699880-89699899 | None:intergenic | 50.0% |
| ! | GGCCAAGCATATAGTGGAAG+TGG | - | Chr7:89699904-89699923 | MsG0780041333.01.T01:CDS | 50.0% |
| ! | GTTTGGGGTCAGTCATGAGA+TGG | + | Chr7:89699472-89699491 | None:intergenic | 50.0% |
| ! | TGTTCTAGATCTGTCCCGAC+TGG | - | Chr7:89698826-89698845 | MsG0780041333.01.T01:intron | 50.0% |
| !!! | AAGCCGCTTTTCATCACCGA+TGG | + | Chr7:89699085-89699104 | None:intergenic | 50.0% |
| !!! | CCTTCATGGTGTTTTGGGAG+AGG | - | Chr7:89698886-89698905 | MsG0780041333.01.T01:intron | 50.0% |
| AGGAGGTCGCCAATCCTGTA+AGG | + | Chr7:89699199-89699218 | None:intergenic | 55.0% | |
| CATGGGTGGGCACATATGGA+TGG | - | Chr7:89699783-89699802 | MsG0780041333.01.T01:CDS | 55.0% | |
| GAGAGCGAGGGTCACGATAA+AGG | - | Chr7:89699805-89699824 | MsG0780041333.01.T01:CDS | 55.0% | |
| GATCTGTCCCGACTGGAAGA+TGG | - | Chr7:89698833-89698852 | MsG0780041333.01.T01:intron | 55.0% | |
| GCACATATGGATGGAGAGCG+AGG | - | Chr7:89699792-89699811 | MsG0780041333.01.T01:CDS | 55.0% | |
| GGACCTGTTCGATCTAGCAG+TGG | - | Chr7:89699583-89699602 | MsG0780041333.01.T01:CDS | 55.0% | |
| AGCTCGGCGAGAGGCTGAAA+TGG | - | Chr7:89698628-89698647 | MsG0780041333.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 89698602 | 89700005 | 89698602 | ID=MsG0780041333.01;Name=MsG0780041333.01 |
| Chr7 | mRNA | 89698602 | 89700005 | 89698602 | ID=MsG0780041333.01.T01;Parent=MsG0780041333.01;Name=MsG0780041333.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|4|0|311 |
| Chr7 | exon | 89699700 | 89700005 | 89699700 | ID=MsG0780041333.01.T01:exon:15706;Parent=MsG0780041333.01.T01 |
| Chr7 | exon | 89699341 | 89699607 | 89699341 | ID=MsG0780041333.01.T01:exon:15705;Parent=MsG0780041333.01.T01 |
| Chr7 | exon | 89698972 | 89699099 | 89698972 | ID=MsG0780041333.01.T01:exon:15704;Parent=MsG0780041333.01.T01 |
| Chr7 | exon | 89698602 | 89698836 | 89698602 | ID=MsG0780041333.01.T01:exon:15703;Parent=MsG0780041333.01.T01 |
| Chr7 | CDS | 89699700 | 89700005 | 89699700 | ID=MsG0780041333.01.T01:cds;Parent=MsG0780041333.01.T01 |
| Chr7 | CDS | 89699341 | 89699607 | 89699341 | ID=MsG0780041333.01.T01:cds;Parent=MsG0780041333.01.T01 |
| Chr7 | CDS | 89698972 | 89699099 | 89698972 | ID=MsG0780041333.01.T01:cds;Parent=MsG0780041333.01.T01 |
| Chr7 | CDS | 89698602 | 89698836 | 89698602 | ID=MsG0780041333.01.T01:cds;Parent=MsG0780041333.01.T01 |
| Gene Sequence |
| Protein sequence |
