Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041508.01.T01 | XP_024625624.1 | 95.611 | 319 | 14 | 0 | 1 | 319 | 1 | 319 | 0 | 639 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041508.01.T01 | I6YGS0 | 35.276 | 326 | 191 | 7 | 1 | 316 | 1 | 316 | 5.20E-61 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041508.01.T01 | A0A072U5U0 | 95.611 | 319 | 14 | 0 | 1 | 319 | 1 | 319 | 0.0 | 639 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0780041313.01 | MsG0780041508.01 | PPI |
| MsG0780041508.01 | MsG0880047066.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041508.01.T01 | MTR_7g112615 | 95.611 | 319 | 14 | 0 | 1 | 319 | 1 | 319 | 0.0 | 639 |
| MsG0780041508.01.T01 | MTR_7g113050 | 91.536 | 319 | 27 | 0 | 1 | 319 | 1 | 319 | 0.0 | 617 |
| MsG0780041508.01.T01 | MTR_7g113020 | 89.342 | 319 | 34 | 0 | 1 | 319 | 1 | 319 | 0.0 | 605 |
| MsG0780041508.01.T01 | MTR_7g113030 | 89.342 | 319 | 34 | 0 | 1 | 319 | 1 | 319 | 0.0 | 605 |
| MsG0780041508.01.T01 | MTR_7g112620 | 89.655 | 319 | 33 | 0 | 1 | 319 | 1 | 319 | 0.0 | 602 |
| MsG0780041508.01.T01 | MTR_7g112960 | 77.116 | 319 | 73 | 0 | 1 | 319 | 1 | 319 | 0.0 | 520 |
| MsG0780041508.01.T01 | MTR_7g112963 | 76.803 | 319 | 74 | 0 | 1 | 319 | 1 | 319 | 0.0 | 514 |
| MsG0780041508.01.T01 | MTR_7g112970 | 75.235 | 319 | 76 | 2 | 1 | 319 | 1 | 316 | 0.0 | 511 |
| MsG0780041508.01.T01 | MTR_4g005160 | 72.136 | 323 | 85 | 3 | 1 | 319 | 1 | 322 | 0.0 | 503 |
| MsG0780041508.01.T01 | MTR_7g112615 | 94.118 | 238 | 14 | 0 | 1 | 238 | 1 | 238 | 4.57e-171 | 474 |
| MsG0780041508.01.T01 | MTR_7g113050 | 90.756 | 238 | 22 | 0 | 1 | 238 | 1 | 238 | 1.44e-165 | 460 |
| MsG0780041508.01.T01 | MTR_7g113010 | 71.025 | 283 | 78 | 2 | 1 | 281 | 1 | 281 | 2.01e-148 | 430 |
| MsG0780041508.01.T01 | MTR_4g120240 | 61.371 | 321 | 120 | 3 | 1 | 319 | 37 | 355 | 2.19e-146 | 416 |
| MsG0780041508.01.T01 | MTR_7g108825 | 60.502 | 319 | 124 | 2 | 1 | 319 | 1 | 317 | 2.57e-141 | 402 |
| MsG0780041508.01.T01 | MTR_7g112615 | 93.711 | 159 | 10 | 0 | 1 | 159 | 1 | 159 | 2.06e-109 | 316 |
| MsG0780041508.01.T01 | MTR_8g076680 | 47.335 | 319 | 164 | 3 | 1 | 319 | 3 | 317 | 6.93e-106 | 312 |
| MsG0780041508.01.T01 | MTR_7g108825 | 57.563 | 238 | 99 | 2 | 1 | 238 | 1 | 236 | 1.13e-95 | 283 |
| MsG0780041508.01.T01 | MTR_7g112910 | 60.241 | 249 | 44 | 5 | 72 | 319 | 1 | 195 | 4.02e-92 | 272 |
| MsG0780041508.01.T01 | MTR_1g083480 | 74.843 | 159 | 36 | 2 | 1 | 156 | 1 | 158 | 1.94e-85 | 255 |
| MsG0780041508.01.T01 | MTR_8g076680 | 47.899 | 238 | 122 | 2 | 1 | 238 | 3 | 238 | 6.97e-80 | 243 |
| MsG0780041508.01.T01 | MTR_2g090240 | 37.383 | 321 | 187 | 7 | 1 | 318 | 1 | 310 | 3.28e-68 | 216 |
| MsG0780041508.01.T01 | MTR_2g090245 | 35.514 | 321 | 193 | 7 | 1 | 318 | 1 | 310 | 3.47e-64 | 205 |
| MsG0780041508.01.T01 | MTR_4g089060 | 36.449 | 321 | 189 | 6 | 1 | 318 | 1 | 309 | 4.67e-64 | 205 |
| MsG0780041508.01.T01 | MTR_4g089040 | 35.514 | 321 | 192 | 6 | 1 | 318 | 1 | 309 | 1.21e-60 | 196 |
| MsG0780041508.01.T01 | MTR_3g024250 | 81.132 | 106 | 20 | 0 | 47 | 152 | 2 | 107 | 1.56e-59 | 187 |
| MsG0780041508.01.T01 | MTR_4g089060 | 33.908 | 348 | 188 | 7 | 1 | 318 | 1 | 336 | 5.51e-59 | 192 |
| MsG0780041508.01.T01 | MTR_4g089060 | 38.627 | 233 | 134 | 3 | 1 | 231 | 1 | 226 | 6.63e-52 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041508.01.T01 | AT3G05600 | 61.111 | 324 | 121 | 4 | 1 | 319 | 1 | 324 | 2.40e-152 | 431 |
| MsG0780041508.01.T01 | AT4G02340 | 57.944 | 321 | 128 | 4 | 1 | 319 | 1 | 316 | 2.56e-139 | 397 |
| MsG0780041508.01.T01 | AT2G26740 | 62.733 | 322 | 113 | 4 | 4 | 319 | 1 | 321 | 5.16e-134 | 384 |
| MsG0780041508.01.T01 | AT2G26750 | 60.125 | 321 | 122 | 4 | 4 | 319 | 1 | 320 | 1.63e-127 | 367 |
| MsG0780041508.01.T01 | AT4G15960 | 52.308 | 325 | 148 | 3 | 1 | 319 | 51 | 374 | 1.51e-124 | 362 |
| MsG0780041508.01.T01 | AT3G05600 | 61.728 | 243 | 88 | 4 | 1 | 238 | 1 | 243 | 2.66e-111 | 323 |
| MsG0780041508.01.T01 | AT4G15955 | 49.387 | 326 | 127 | 4 | 5 | 319 | 6 | 304 | 7.99e-109 | 319 |
| MsG0780041508.01.T01 | AT3G51000 | 45.872 | 327 | 156 | 6 | 3 | 319 | 4 | 319 | 2.26e-103 | 306 |
| MsG0780041508.01.T01 | AT4G15955 | 56.897 | 174 | 65 | 2 | 5 | 168 | 6 | 179 | 3.80e-68 | 211 |
| MsG0780041508.01.T01 | AT4G15955 | 57.576 | 165 | 60 | 2 | 5 | 159 | 6 | 170 | 5.30e-65 | 203 |
Find 86 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7:-91844111 | None:intergenic |
| CCCCTGACAAATTGCCTTCT+TGG | 0.174429 | 7:+91844707 | MsG0780041508.01.T01:CDS |
| TTATTATATCTCTAGATTTC+AGG | 0.211379 | 7:+91844212 | MsG0780041508.01.T01:CDS |
| CAAGGAAGATGTGCCGAATT+TGG | 0.238850 | 7:+91845328 | MsG0780041508.01.T01:CDS |
| TTAGGGTTTCTACGCGTAAA+TGG | 0.282040 | 7:-91844147 | None:intergenic |
| TGCAAAGATACCAACCAATT+AGG | 0.292935 | 7:-91844080 | None:intergenic |
| GGCAATTTGTCAGGGGTATC+CGG | 0.299751 | 7:-91844700 | None:intergenic |
| TACTCTCCCTTTGGAAGTAT+TGG | 0.334854 | 7:-91844661 | None:intergenic |
| TTTGAGAAAACGGGCTTTGT+TGG | 0.335209 | 7:+91844766 | MsG0780041508.01.T01:CDS |
| ATACTTCCAAAGGGAGAGTA+TGG | 0.337259 | 7:+91844664 | MsG0780041508.01.T01:CDS |
| CATGATTGGGGTGCCCTAAT+TGG | 0.343119 | 7:+91844066 | MsG0780041508.01.T01:CDS |
| CCTAAAATCAGAACTGTTGA+TGG | 0.347446 | 7:+91844165 | MsG0780041508.01.T01:CDS |
| TGTTTCTTGTAGCTCATGAT+TGG | 0.362025 | 7:+91844052 | MsG0780041508.01.T01:CDS |
| GATGGCATGCGTGCTGCTTA+TGG | 0.363820 | 7:+91844183 | MsG0780041508.01.T01:CDS |
| GAAGAAGTGATTGTCCAAAA+AGG | 0.365676 | 7:+91845350 | MsG0780041508.01.T01:CDS |
| GTTTCCAAATTTGAGAAAAC+GGG | 0.368898 | 7:+91844757 | MsG0780041508.01.T01:CDS |
| ACAATCACTTCTTCCAAATT+CGG | 0.378669 | 7:-91845341 | None:intergenic |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7:-91843868 | None:intergenic |
| TGTTTCCAAATTTGAGAAAA+CGG | 0.384535 | 7:+91844756 | MsG0780041508.01.T01:CDS |
| CGCCACCAGATTGCTGCTCT+CGG | 0.393921 | 7:+91843889 | MsG0780041508.01.T01:CDS |
| GTTTCTTGTAGCTCATGATT+GGG | 0.395980 | 7:+91844053 | MsG0780041508.01.T01:CDS |
| GCAAAGATACCAACCAATTA+GGG | 0.397770 | 7:-91844079 | None:intergenic |
| AGCCAAGAAGGCAATTTGTC+AGG | 0.405805 | 7:-91844709 | None:intergenic |
| TCACCGTAGCCACGAAGATC+TGG | 0.407123 | 7:-91843937 | None:intergenic |
| TGGATATACTCCTTCACCTT+TGG | 0.407549 | 7:-91845293 | None:intergenic |
| TTACTTGTATTGCAGAAATT+GGG | 0.423076 | 7:+91845187 | MsG0780041508.01.T01:intron |
| CCTGTTGTCCTGTTCCTTCA+CGG | 0.424309 | 7:+91843841 | MsG0780041508.01.T01:CDS |
| GAAGTATTGGAGGACCAGTT+TGG | 0.425771 | 7:-91844648 | None:intergenic |
| ATCCTCACAACTCGCCAAAC+TGG | 0.430315 | 7:+91844634 | MsG0780041508.01.T01:CDS |
| GTGCCTGTGAAATTCATTAC+AGG | 0.432209 | 7:+91845245 | MsG0780041508.01.T01:CDS |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7:-91844110 | None:intergenic |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7:+91843866 | MsG0780041508.01.T01:CDS |
| CCAGTCCCATACTCTCCCTT+TGG | 0.435883 | 7:-91844670 | None:intergenic |
| GAGAGCCGAGAGCAGCAATC+TGG | 0.444182 | 7:-91843894 | None:intergenic |
| CAGGAAAGCCGTGAAGGAAC+AGG | 0.460850 | 7:-91843849 | None:intergenic |
| GTTGCTCTCATCGACTTGCT+TGG | 0.464883 | 7:+91844018 | MsG0780041508.01.T01:CDS |
| CACAGAAAAGTTGAAGTGAA+TGG | 0.467750 | 7:+91843781 | MsG0780041508.01.T01:CDS |
| TATCCATGGTGGAGGGTTCA+AGG | 0.477350 | 7:+91845310 | MsG0780041508.01.T01:CDS |
| ATTGCTGCTCTCGGCTCTCT+CGG | 0.478105 | 7:+91843898 | MsG0780041508.01.T01:CDS |
| CCGTGAAGGAACAGGACAAC+AGG | 0.481846 | 7:-91843841 | None:intergenic |
| TCTCCCTTTGGAAGTATTGG+AGG | 0.487060 | 7:-91844658 | None:intergenic |
| AAAATGCATATTGCAGAGAA+AGG | 0.487741 | 7:+91843808 | MsG0780041508.01.T01:CDS |
| GCAATTTGTCAGGGGTATCC+GGG | 0.490025 | 7:-91844699 | None:intergenic |
| TCATCTTCTGTGAGCCAAGA+AGG | 0.501938 | 7:-91844721 | None:intergenic |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7:+91843857 | MsG0780041508.01.T01:CDS |
| GCTCCAGATCTTCGTGGCTA+CGG | 0.504735 | 7:+91843934 | MsG0780041508.01.T01:CDS |
| GAGAAAACGGGCTTTGTTGG+AGG | 0.506662 | 7:+91844769 | MsG0780041508.01.T01:CDS |
| GCTGTTGCTCCAGATCTTCG+TGG | 0.527210 | 7:+91843928 | MsG0780041508.01.T01:CDS |
| GAAGTTCAGATGGCTGAAGT+TGG | 0.532879 | 7:+91844589 | MsG0780041508.01.T01:CDS |
| GAAATTCATTACAGGTGACT+TGG | 0.543660 | 7:+91845253 | MsG0780041508.01.T01:CDS |
| ATTGCAGAGAAAGGAAAAGA+AGG | 0.548522 | 7:+91843817 | MsG0780041508.01.T01:CDS |
| AAGGAGTATATCCATGGTGG+AGG | 0.549978 | 7:+91845302 | MsG0780041508.01.T01:CDS |
| CTACGGTGACACCGATGCTC+CGG | 0.550138 | 7:+91843951 | MsG0780041508.01.T01:CDS |
| GCCAAGAAGGCAATTTGTCA+GGG | 0.555944 | 7:-91844708 | None:intergenic |
| GCGTAGCTGCTAATCGAAGC+CGG | 0.557719 | 7:-91843970 | None:intergenic |
| TGGTCCTCCAATACTTCCAA+AGG | 0.564157 | 7:+91844654 | MsG0780041508.01.T01:CDS |
| CCAAAGGGAGAGTATGGGAC+TGG | 0.568658 | 7:+91844670 | MsG0780041508.01.T01:CDS |
| AGCCGAGAGCAGCAATCTGG+TGG | 0.568882 | 7:-91843891 | None:intergenic |
| GAGCTGATGGCACCATGGAA+TGG | 0.569405 | 7:+91845209 | MsG0780041508.01.T01:CDS |
| ATTGGGGTGCCCTAATTGGT+TGG | 0.573060 | 7:+91844070 | MsG0780041508.01.T01:CDS |
| GCTAATCGAAGCCGGAGCAT+CGG | 0.580714 | 7:-91843962 | None:intergenic |
| TGGAACACTGAGACAAACAT+AGG | 0.583516 | 7:-91844127 | None:intergenic |
| ATACTCCTTCACCTTTGGTG+AGG | 0.584740 | 7:-91845288 | None:intergenic |
| TCACCTGTAATGAATTTCAC+AGG | 0.591992 | 7:-91845248 | None:intergenic |
| GGTCCTCCAATACTTCCAAA+GGG | 0.592627 | 7:+91844655 | MsG0780041508.01.T01:CDS |
| ATGGAATGGAGTGAAAATCA+AGG | 0.596236 | 7:+91845223 | MsG0780041508.01.T01:CDS |
| TTTCTTGTAGCTCATGATTG+GGG | 0.597857 | 7:+91844054 | MsG0780041508.01.T01:CDS |
| TGAGAAACGACAGATAGAGA+TGG | 0.598774 | 7:+91843747 | None:intergenic |
| TTGCAGAAATTGGGAGCTGA+TGG | 0.610067 | 7:+91845196 | MsG0780041508.01.T01:intron |
| CAACAATCAAGAAGCAGCAG+AGG | 0.610084 | 7:+91845385 | MsG0780041508.01.T01:CDS |
| GACCAGTTTGGCGAGTTGTG+AGG | 0.620536 | 7:-91844636 | None:intergenic |
| TCTCATCGACTTGCTTGGTG+TGG | 0.620782 | 7:+91844023 | MsG0780041508.01.T01:CDS |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7:-91843855 | None:intergenic |
| TACTTCCAAAGGGAGAGTAT+GGG | 0.628244 | 7:+91844665 | MsG0780041508.01.T01:CDS |
| AAGGTGAAGGAGTATATCCA+TGG | 0.634923 | 7:+91845296 | MsG0780041508.01.T01:CDS |
| TTATCCGTATCACAGGAACC+GGG | 0.636418 | 7:+91844559 | MsG0780041508.01.T01:intron |
| ATACACCTCACCAAAGGTGA+AGG | 0.642917 | 7:+91845283 | MsG0780041508.01.T01:CDS |
| AAACGACAGATAGAGATGGA+AGG | 0.647201 | 7:+91843751 | MsG0780041508.01.T01:exon |
| ATTGGGAGCTGATGGCACCA+TGG | 0.649732 | 7:+91845204 | MsG0780041508.01.T01:CDS |
| CATTGTATACACCTCACCAA+AGG | 0.655794 | 7:+91845277 | MsG0780041508.01.T01:CDS |
| CTTCCTTGAACCCTCCACCA+TGG | 0.658760 | 7:-91845313 | None:intergenic |
| GAAGATCTGGAGCAACAGCA+CGG | 0.677123 | 7:-91843924 | None:intergenic |
| GTATGGGACTGGATTCAACC+CGG | 0.688961 | 7:+91844681 | MsG0780041508.01.T01:CDS |
| CCAAGAAGGCAATTTGTCAG+GGG | 0.688969 | 7:-91844707 | None:intergenic |
| AGGAGTATATCCATGGTGGA+GGG | 0.690032 | 7:+91845303 | MsG0780041508.01.T01:CDS |
| GTGAAGGAGTATATCCATGG+TGG | 0.691244 | 7:+91845299 | MsG0780041508.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATTTTTAAAAAAAAAA+TGG | - | Chr7:91845060-91845079 | None:intergenic | 0.0% |
| !! | GAGTAATATTAAATATGTTA+GGG | + | Chr7:91844475-91844494 | MsG0780041508.01.T01:intron | 15.0% |
| !!! | TCTATATTTACATTTCTTTT+CGG | + | Chr7:91844864-91844883 | MsG0780041508.01.T01:intron | 15.0% |
| !! | ATGAATTATTGTTCATTCTA+AGG | + | Chr7:91844453-91844472 | MsG0780041508.01.T01:intron | 20.0% |
| !! | CAACTTTAGTATTAACATAT+AGG | - | Chr7:91844286-91844305 | None:intergenic | 20.0% |
| !! | GAAATGTAAATATAGATTTG+TGG | - | Chr7:91844860-91844879 | None:intergenic | 20.0% |
| !! | GGAGTAATATTAAATATGTT+AGG | + | Chr7:91844474-91844493 | MsG0780041508.01.T01:intron | 20.0% |
| !! | TTATTATATCTCTAGATTTC+AGG | + | Chr7:91844212-91844231 | MsG0780041508.01.T01:CDS | 20.0% |
| !!! | CTATATTTACATTTCTTTTC+GGG | + | Chr7:91844865-91844884 | MsG0780041508.01.T01:intron | 20.0% |
| !!! | CTTGATATTTTAAGATGATA+CGG | - | Chr7:91844248-91844267 | None:intergenic | 20.0% |
| ! | AATAGAGCCTAAATCAAAAT+CGG | + | Chr7:91844378-91844397 | MsG0780041508.01.T01:intron | 25.0% |
| ! | AATCAAAATCGGAACATTTA+TGG | + | Chr7:91844389-91844408 | MsG0780041508.01.T01:intron | 25.0% |
| ! | ATTACTTGTATTGCAGAAAT+TGG | + | Chr7:91845186-91845205 | MsG0780041508.01.T01:intron | 25.0% |
| ! | CTAAATGTAATATGTGATTG+TGG | - | Chr7:91845031-91845050 | None:intergenic | 25.0% |
| ! | TATTTATACCTGCAATATGA+CGG | - | Chr7:91844506-91844525 | None:intergenic | 25.0% |
| ! | TGTCAAATATCAACACATAT+CGG | - | Chr7:91844972-91844991 | None:intergenic | 25.0% |
| ! | TGTTTCCAAATTTGAGAAAA+CGG | + | Chr7:91844756-91844775 | MsG0780041508.01.T01:CDS | 25.0% |
| ! | TTACTTGTATTGCAGAAATT+GGG | + | Chr7:91845187-91845206 | MsG0780041508.01.T01:intron | 25.0% |
| !! | TCATGTTTTATATTTGTGTC+AGG | + | Chr7:91845101-91845120 | MsG0780041508.01.T01:intron | 25.0% |
| !!! | AAATGTTCCGATTTTGATTT+AGG | - | Chr7:91844388-91844407 | None:intergenic | 25.0% |
| !!! | TATTTTAAGATGATACGGAA+AGG | - | Chr7:91844243-91844262 | None:intergenic | 25.0% |
| !!! | TGTAATATTTTGATTCTCTG+TGG | + | Chr7:91844818-91844837 | MsG0780041508.01.T01:intron | 25.0% |
| AAAATGCATATTGCAGAGAA+AGG | + | Chr7:91843808-91843827 | MsG0780041508.01.T01:CDS | 30.0% | |
| AATGTCGTCCCAAAAAAAAA+AGG | - | Chr7:91845004-91845023 | None:intergenic | 30.0% | |
| ACAATCACTTCTTCCAAATT+CGG | - | Chr7:91845344-91845363 | None:intergenic | 30.0% | |
| ATTTATACCTGCAATATGAC+GGG | - | Chr7:91844505-91844524 | None:intergenic | 30.0% | |
| GTTTCCAAATTTGAGAAAAC+GGG | + | Chr7:91844757-91844776 | MsG0780041508.01.T01:CDS | 30.0% | |
| TATCTATGAGTCATACTCAA+TGG | + | Chr7:91844331-91844350 | MsG0780041508.01.T01:intron | 30.0% | |
| TGACTCATAGATATAGTTCA+AGG | - | Chr7:91844324-91844343 | None:intergenic | 30.0% | |
| !! | CATCAACAGTTCTGATTTTA+GGG | - | Chr7:91844167-91844186 | None:intergenic | 30.0% |
| !!! | TTGTTTTTTATCCGTATCAC+AGG | + | Chr7:91844552-91844571 | MsG0780041508.01.T01:intron | 30.0% |
| AGATCACTCTTTATGAACCA+CGG | - | Chr7:91845144-91845163 | None:intergenic | 35.0% | |
| ATGGAATGGAGTGAAAATCA+AGG | + | Chr7:91845223-91845242 | MsG0780041508.01.T01:CDS | 35.0% | |
| ATTCTTGATTGAGTCATGCT+GGG | - | Chr7:91844435-91844454 | None:intergenic | 35.0% | |
| ATTGCAGAGAAAGGAAAAGA+AGG | + | Chr7:91843817-91843836 | MsG0780041508.01.T01:CDS | 35.0% | |
| CACAGAAAAGTTGAAGTGAA+TGG | + | Chr7:91843781-91843800 | MsG0780041508.01.T01:CDS | 35.0% | |
| CCTAAAATCAGAACTGTTGA+TGG | + | Chr7:91844165-91844184 | MsG0780041508.01.T01:CDS | 35.0% | |
| GAAATTCATTACAGGTGACT+TGG | + | Chr7:91845253-91845272 | MsG0780041508.01.T01:CDS | 35.0% | |
| GAAGAAGTGATTGTCCAAAA+AGG | + | Chr7:91845350-91845369 | MsG0780041508.01.T01:CDS | 35.0% | |
| GATTTGTGGAAAACAATCAG+AGG | - | Chr7:91844846-91844865 | None:intergenic | 35.0% | |
| GCAAAGATACCAACCAATTA+GGG | - | Chr7:91844082-91844101 | None:intergenic | 35.0% | |
| GTTTCTTGTAGCTCATGATT+GGG | + | Chr7:91844053-91844072 | MsG0780041508.01.T01:CDS | 35.0% | |
| TATCAACACATATCGGACAT+TGG | - | Chr7:91844965-91844984 | None:intergenic | 35.0% | |
| TCACCTGTAATGAATTTCAC+AGG | - | Chr7:91845251-91845270 | None:intergenic | 35.0% | |
| TGCAAAGATACCAACCAATT+AGG | - | Chr7:91844083-91844102 | None:intergenic | 35.0% | |
| TGTTTCTTGTAGCTCATGAT+TGG | + | Chr7:91844052-91844071 | MsG0780041508.01.T01:CDS | 35.0% | |
| TTTCTTGTAGCTCATGATTG+GGG | + | Chr7:91844054-91844073 | MsG0780041508.01.T01:CDS | 35.0% | |
| ! | AAAGCCCGTTTTCTCAAATT+TGG | - | Chr7:91844764-91844783 | None:intergenic | 35.0% |
| ! | ACATAGGCTTTGATTCTTTC+AGG | - | Chr7:91844114-91844133 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | - | Chr7:91844113-91844132 | None:intergenic | 35.0% |
| ! | TACGCATGTTTTCACATAGT+AGG | + | Chr7:91843988-91844007 | MsG0780041508.01.T01:CDS | 35.0% |
| ! | TTGATTTTCACTCCATTCCA+TGG | - | Chr7:91845224-91845243 | None:intergenic | 35.0% |
| !! | ATCTGAACTTCCATTTTTCC+CGG | - | Chr7:91844580-91844599 | None:intergenic | 35.0% |
| !! | CCATCAACAGTTCTGATTTT+AGG | - | Chr7:91844168-91844187 | None:intergenic | 35.0% |
| !!! | TGACACCGCCTTTTTTTTTT+GGG | + | Chr7:91844993-91845012 | MsG0780041508.01.T01:intron | 35.0% |
| !!! | TTGACACCGCCTTTTTTTTT+TGG | + | Chr7:91844992-91845011 | MsG0780041508.01.T01:intron | 35.0% |
| AAACGACAGATAGAGATGGA+AGG | + | Chr7:91843751-91843770 | MsG0780041508.01.T01:exon | 40.0% | |
| AGTGATTGTCCAAAAAGGAG+TGG | + | Chr7:91845355-91845374 | MsG0780041508.01.T01:CDS | 40.0% | |
| ATACTTCCAAAGGGAGAGTA+TGG | + | Chr7:91844664-91844683 | MsG0780041508.01.T01:CDS | 40.0% | |
| CATTCTTGATTGAGTCATGC+TGG | - | Chr7:91844436-91844455 | None:intergenic | 40.0% | |
| CATTGTATACACCTCACCAA+AGG | + | Chr7:91845277-91845296 | MsG0780041508.01.T01:CDS | 40.0% | |
| GGGAAAAATGGAAGTTCAGA+TGG | + | Chr7:91844579-91844598 | MsG0780041508.01.T01:CDS | 40.0% | |
| GTCGTCCCAAAAAAAAAAGG+CGG | - | Chr7:91845001-91845020 | None:intergenic | 40.0% | |
| GTGCCTGTGAAATTCATTAC+AGG | + | Chr7:91845245-91845264 | MsG0780041508.01.T01:CDS | 40.0% | |
| TGGAACACTGAGACAAACAT+AGG | - | Chr7:91844130-91844149 | None:intergenic | 40.0% | |
| TGGATATACTCCTTCACCTT+TGG | - | Chr7:91845296-91845315 | None:intergenic | 40.0% | |
| TTAGGGTTTCTACGCGTAAA+TGG | - | Chr7:91844150-91844169 | None:intergenic | 40.0% | |
| TTTATCCGTATCACAGGAAC+CGG | + | Chr7:91844558-91844577 | MsG0780041508.01.T01:intron | 40.0% | |
| TTTATGAACCACGGAGACAT+TGG | - | Chr7:91845135-91845154 | None:intergenic | 40.0% | |
| ! | AAGGTGAAGGAGTATATCCA+TGG | + | Chr7:91845296-91845315 | MsG0780041508.01.T01:CDS | 40.0% |
| ! | TACTCTCCCTTTGGAAGTAT+TGG | - | Chr7:91844664-91844683 | None:intergenic | 40.0% |
| ! | TACTTCCAAAGGGAGAGTAT+GGG | + | Chr7:91844665-91844684 | MsG0780041508.01.T01:CDS | 40.0% |
| ! | TTTGAGAAAACGGGCTTTGT+TGG | + | Chr7:91844766-91844785 | MsG0780041508.01.T01:CDS | 40.0% |
| AGCCAAGAAGGCAATTTGTC+AGG | - | Chr7:91844712-91844731 | None:intergenic | 45.0% | |
| ATACACCTCACCAAAGGTGA+AGG | + | Chr7:91845283-91845302 | MsG0780041508.01.T01:CDS | 45.0% | |
| ATACTCCTTCACCTTTGGTG+AGG | - | Chr7:91845291-91845310 | None:intergenic | 45.0% | |
| ATCACAGGAACCGGGAAAAA+TGG | + | Chr7:91844567-91844586 | MsG0780041508.01.T01:intron | 45.0% | |
| CAACAATCAAGAAGCAGCAG+AGG | + | Chr7:91845385-91845404 | MsG0780041508.01.T01:CDS | 45.0% | |
| CAAGGAAGATGTGCCGAATT+TGG | + | Chr7:91845328-91845347 | MsG0780041508.01.T01:CDS | 45.0% | |
| CCAAGAAGGCAATTTGTCAG+GGG | - | Chr7:91844710-91844729 | None:intergenic | 45.0% | |
| GAAGTTCAGATGGCTGAAGT+TGG | + | Chr7:91844589-91844608 | MsG0780041508.01.T01:CDS | 45.0% | |
| GCCAAGAAGGCAATTTGTCA+GGG | - | Chr7:91844711-91844730 | None:intergenic | 45.0% | |
| GGTCCTCCAATACTTCCAAA+GGG | + | Chr7:91844655-91844674 | MsG0780041508.01.T01:CDS | 45.0% | |
| TCATCTTCTGTGAGCCAAGA+AGG | - | Chr7:91844724-91844743 | None:intergenic | 45.0% | |
| TGGTCCTCCAATACTTCCAA+AGG | + | Chr7:91844654-91844673 | MsG0780041508.01.T01:CDS | 45.0% | |
| TTATCCGTATCACAGGAACC+GGG | + | Chr7:91844559-91844578 | MsG0780041508.01.T01:intron | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | + | Chr7:91843866-91843885 | MsG0780041508.01.T01:CDS | 45.0% | |
| TTGCAGAAATTGGGAGCTGA+TGG | + | Chr7:91845196-91845215 | MsG0780041508.01.T01:intron | 45.0% | |
| ! | AAGGAGTATATCCATGGTGG+AGG | + | Chr7:91845302-91845321 | MsG0780041508.01.T01:CDS | 45.0% |
| ! | AGGAGTATATCCATGGTGGA+GGG | + | Chr7:91845303-91845322 | MsG0780041508.01.T01:CDS | 45.0% |
| ! | GTGAAGGAGTATATCCATGG+TGG | + | Chr7:91845299-91845318 | MsG0780041508.01.T01:CDS | 45.0% |
| ! | TGAAGTGAGCCACTCCTTTT+TGG | - | Chr7:91845367-91845386 | None:intergenic | 45.0% |
| ! | TTTTCCCGGTTCCTGTGATA+CGG | - | Chr7:91844566-91844585 | None:intergenic | 45.0% |
| !! | GAAGTATTGGAGGACCAGTT+TGG | - | Chr7:91844651-91844670 | None:intergenic | 45.0% |
| !! | TCTCCCTTTGGAAGTATTGG+AGG | - | Chr7:91844661-91844680 | None:intergenic | 45.0% |
| AGAGTTCAGGAAAGCCGTGA+AGG | - | Chr7:91843858-91843877 | None:intergenic | 50.0% | |
| ATCCTCACAACTCGCCAAAC+TGG | + | Chr7:91844634-91844653 | MsG0780041508.01.T01:CDS | 50.0% | |
| CCCCTGACAAATTGCCTTCT+TGG | + | Chr7:91844707-91844726 | MsG0780041508.01.T01:CDS | 50.0% | |
| CCTGTTGTCCTGTTCCTTCA+CGG | + | Chr7:91843841-91843860 | MsG0780041508.01.T01:CDS | 50.0% | |
| GTATGGGACTGGATTCAACC+CGG | + | Chr7:91844681-91844700 | MsG0780041508.01.T01:CDS | 50.0% | |
| TGTTGTGTCCAATGTCTCCG+TGG | + | Chr7:91845124-91845143 | MsG0780041508.01.T01:intron | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | + | Chr7:91843857-91843876 | MsG0780041508.01.T01:CDS | 50.0% | |
| ! | ATTGGGGTGCCCTAATTGGT+TGG | + | Chr7:91844070-91844089 | MsG0780041508.01.T01:CDS | 50.0% |
| ! | CATGATTGGGGTGCCCTAAT+TGG | + | Chr7:91844066-91844085 | MsG0780041508.01.T01:CDS | 50.0% |
| ! | GAAGATCTGGAGCAACAGCA+CGG | - | Chr7:91843927-91843946 | None:intergenic | 50.0% |
| ! | TATCCATGGTGGAGGGTTCA+AGG | + | Chr7:91845310-91845329 | MsG0780041508.01.T01:CDS | 50.0% |
| !! | GAGAAAACGGGCTTTGTTGG+AGG | + | Chr7:91844769-91844788 | MsG0780041508.01.T01:CDS | 50.0% |
| !! | GCAATTTGTCAGGGGTATCC+GGG | - | Chr7:91844702-91844721 | None:intergenic | 50.0% |
| !! | GGCAATTTGTCAGGGGTATC+CGG | - | Chr7:91844703-91844722 | None:intergenic | 50.0% |
| !! | GTTGCTCTCATCGACTTGCT+TGG | + | Chr7:91844018-91844037 | MsG0780041508.01.T01:CDS | 50.0% |
| !! | TCTCATCGACTTGCTTGGTG+TGG | + | Chr7:91844023-91844042 | MsG0780041508.01.T01:CDS | 50.0% |
| ATTGCTGCTCTCGGCTCTCT+CGG | + | Chr7:91843898-91843917 | MsG0780041508.01.T01:CDS | 55.0% | |
| ATTGGGAGCTGATGGCACCA+TGG | + | Chr7:91845204-91845223 | MsG0780041508.01.T01:CDS | 55.0% | |
| CAGGAAAGCCGTGAAGGAAC+AGG | - | Chr7:91843852-91843871 | None:intergenic | 55.0% | |
| CCAGTCCCATACTCTCCCTT+TGG | - | Chr7:91844673-91844692 | None:intergenic | 55.0% | |
| CCGTGAAGGAACAGGACAAC+AGG | - | Chr7:91843844-91843863 | None:intergenic | 55.0% | |
| CTTCCTTGAACCCTCCACCA+TGG | - | Chr7:91845316-91845335 | None:intergenic | 55.0% | |
| GACCAGTTTGGCGAGTTGTG+AGG | - | Chr7:91844639-91844658 | None:intergenic | 55.0% | |
| GAGCTGATGGCACCATGGAA+TGG | + | Chr7:91845209-91845228 | MsG0780041508.01.T01:CDS | 55.0% | |
| GCGTAGCTGCTAATCGAAGC+CGG | - | Chr7:91843973-91843992 | None:intergenic | 55.0% | |
| GCTAATCGAAGCCGGAGCAT+CGG | - | Chr7:91843965-91843984 | None:intergenic | 55.0% | |
| GCTCCAGATCTTCGTGGCTA+CGG | + | Chr7:91843934-91843953 | MsG0780041508.01.T01:CDS | 55.0% | |
| GCTGTTGCTCCAGATCTTCG+TGG | + | Chr7:91843928-91843947 | MsG0780041508.01.T01:CDS | 55.0% | |
| GGGTCTACCCGTCATATTGC+AGG | + | Chr7:91844495-91844514 | MsG0780041508.01.T01:intron | 55.0% | |
| TCACCGTAGCCACGAAGATC+TGG | - | Chr7:91843940-91843959 | None:intergenic | 55.0% | |
| ! | CCAAAGGGAGAGTATGGGAC+TGG | + | Chr7:91844670-91844689 | MsG0780041508.01.T01:CDS | 55.0% |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | - | Chr7:91843871-91843890 | None:intergenic | 55.0% |
| !! | GATGGCATGCGTGCTGCTTA+TGG | + | Chr7:91844183-91844202 | MsG0780041508.01.T01:CDS | 55.0% |
| AGCCGAGAGCAGCAATCTGG+TGG | - | Chr7:91843894-91843913 | None:intergenic | 60.0% | |
| CGCCACCAGATTGCTGCTCT+CGG | + | Chr7:91843889-91843908 | MsG0780041508.01.T01:CDS | 60.0% | |
| CTACGGTGACACCGATGCTC+CGG | + | Chr7:91843951-91843970 | MsG0780041508.01.T01:CDS | 60.0% | |
| GAGAGCCGAGAGCAGCAATC+TGG | - | Chr7:91843897-91843916 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 91843751 | 91845448 | 91843751 | ID=MsG0780041508.01;Name=MsG0780041508.01 |
| Chr7 | mRNA | 91843751 | 91845448 | 91843751 | ID=MsG0780041508.01.T01;Parent=MsG0780041508.01;Name=MsG0780041508.01.T01;_AED=0.49;_eAED=0.49;_QI=15|0|0.33|1|1|1|3|0|319 |
| Chr7 | exon | 91843751 | 91844233 | 91843751 | ID=MsG0780041508.01.T01:exon:18718;Parent=MsG0780041508.01.T01 |
| Chr7 | exon | 91844574 | 91844818 | 91844574 | ID=MsG0780041508.01.T01:exon:18719;Parent=MsG0780041508.01.T01 |
| Chr7 | exon | 91845202 | 91845448 | 91845202 | ID=MsG0780041508.01.T01:exon:18720;Parent=MsG0780041508.01.T01 |
| Chr7 | five_prime_UTR | 91843751 | 91843765 | 91843751 | ID=MsG0780041508.01.T01:five_prime_utr;Parent=MsG0780041508.01.T01 |
| Chr7 | CDS | 91843766 | 91844233 | 91843766 | ID=MsG0780041508.01.T01:cds;Parent=MsG0780041508.01.T01 |
| Chr7 | CDS | 91844574 | 91844818 | 91844574 | ID=MsG0780041508.01.T01:cds;Parent=MsG0780041508.01.T01 |
| Chr7 | CDS | 91845202 | 91845448 | 91845202 | ID=MsG0780041508.01.T01:cds;Parent=MsG0780041508.01.T01 |
| Gene Sequence |
| Protein sequence |
