Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041513.01.T01 | XP_003626243.1 | 94.357 | 319 | 18 | 0 | 1 | 319 | 1 | 319 | 0 | 629 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041513.01.T01 | I6YGS0 | 36.81 | 326 | 186 | 7 | 1 | 316 | 1 | 316 | 2.91E-65 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041513.01.T01 | A2Q320 | 94.357 | 319 | 18 | 0 | 1 | 319 | 1 | 319 | 0.0 | 629 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0880047066.01 | MsG0780041513.01 | PPI |
| MsG0780041313.01 | MsG0780041513.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041513.01.T01 | MTR_7g113020 | 94.357 | 319 | 18 | 0 | 1 | 319 | 1 | 319 | 0.0 | 629 |
| MsG0780041513.01.T01 | MTR_7g112615 | 91.850 | 319 | 26 | 0 | 1 | 319 | 1 | 319 | 0.0 | 617 |
| MsG0780041513.01.T01 | MTR_7g113050 | 89.969 | 319 | 32 | 0 | 1 | 319 | 1 | 319 | 0.0 | 610 |
| MsG0780041513.01.T01 | MTR_7g113030 | 89.655 | 319 | 33 | 0 | 1 | 319 | 1 | 319 | 0.0 | 606 |
| MsG0780041513.01.T01 | MTR_7g112620 | 89.342 | 319 | 34 | 0 | 1 | 319 | 1 | 319 | 0.0 | 605 |
| MsG0780041513.01.T01 | MTR_7g112960 | 77.882 | 321 | 67 | 2 | 1 | 319 | 1 | 319 | 0.0 | 526 |
| MsG0780041513.01.T01 | MTR_7g112963 | 78.505 | 321 | 65 | 2 | 1 | 319 | 1 | 319 | 0.0 | 525 |
| MsG0780041513.01.T01 | MTR_7g112970 | 76.176 | 319 | 73 | 2 | 1 | 319 | 1 | 316 | 0.0 | 520 |
| MsG0780041513.01.T01 | MTR_4g005160 | 73.375 | 323 | 81 | 3 | 1 | 319 | 1 | 322 | 0.0 | 510 |
| MsG0780041513.01.T01 | MTR_7g112615 | 91.176 | 238 | 21 | 0 | 1 | 238 | 1 | 238 | 3.07e-166 | 462 |
| MsG0780041513.01.T01 | MTR_7g113050 | 89.496 | 238 | 25 | 0 | 1 | 238 | 1 | 238 | 8.59e-165 | 458 |
| MsG0780041513.01.T01 | MTR_7g113010 | 72.085 | 283 | 75 | 2 | 1 | 281 | 1 | 281 | 3.06e-152 | 439 |
| MsG0780041513.01.T01 | MTR_4g120240 | 62.617 | 321 | 116 | 3 | 1 | 319 | 37 | 355 | 6.06e-148 | 420 |
| MsG0780041513.01.T01 | MTR_7g108825 | 61.129 | 319 | 122 | 2 | 1 | 319 | 1 | 317 | 2.31e-143 | 407 |
| MsG0780041513.01.T01 | MTR_7g112615 | 93.082 | 159 | 11 | 0 | 1 | 159 | 1 | 159 | 5.79e-108 | 312 |
| MsG0780041513.01.T01 | MTR_8g076680 | 47.335 | 319 | 164 | 3 | 1 | 319 | 3 | 317 | 1.17e-105 | 311 |
| MsG0780041513.01.T01 | MTR_7g108825 | 59.244 | 238 | 95 | 2 | 1 | 238 | 1 | 236 | 9.35e-100 | 293 |
| MsG0780041513.01.T01 | MTR_7g112910 | 59.438 | 249 | 46 | 5 | 72 | 319 | 1 | 195 | 6.09e-92 | 272 |
| MsG0780041513.01.T01 | MTR_1g083480 | 75.472 | 159 | 35 | 2 | 1 | 156 | 1 | 158 | 5.03e-87 | 259 |
| MsG0780041513.01.T01 | MTR_8g076680 | 47.899 | 238 | 122 | 2 | 1 | 238 | 3 | 238 | 3.66e-81 | 246 |
| MsG0780041513.01.T01 | MTR_2g090240 | 36.449 | 321 | 190 | 7 | 1 | 318 | 1 | 310 | 1.55e-66 | 211 |
| MsG0780041513.01.T01 | MTR_4g089060 | 36.137 | 321 | 190 | 6 | 1 | 318 | 1 | 309 | 1.93e-64 | 206 |
| MsG0780041513.01.T01 | MTR_2g090245 | 35.202 | 321 | 194 | 7 | 1 | 318 | 1 | 310 | 5.57e-64 | 205 |
| MsG0780041513.01.T01 | MTR_4g089040 | 35.514 | 321 | 192 | 6 | 1 | 318 | 1 | 309 | 4.04e-62 | 200 |
| MsG0780041513.01.T01 | MTR_3g024250 | 81.132 | 106 | 20 | 0 | 47 | 152 | 2 | 107 | 2.97e-59 | 186 |
| MsG0780041513.01.T01 | MTR_4g089060 | 33.621 | 348 | 189 | 7 | 1 | 318 | 1 | 336 | 3.06e-59 | 193 |
| MsG0780041513.01.T01 | MTR_4g089060 | 38.627 | 233 | 134 | 3 | 1 | 231 | 1 | 226 | 2.05e-53 | 175 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041513.01.T01 | AT3G05600 | 63.889 | 324 | 112 | 4 | 1 | 319 | 1 | 324 | 3.34e-157 | 442 |
| MsG0780041513.01.T01 | AT4G02340 | 59.190 | 321 | 124 | 4 | 1 | 319 | 1 | 316 | 7.09e-143 | 406 |
| MsG0780041513.01.T01 | AT2G26740 | 63.043 | 322 | 112 | 4 | 4 | 319 | 1 | 321 | 1.38e-134 | 385 |
| MsG0780041513.01.T01 | AT4G15960 | 54.154 | 325 | 142 | 3 | 1 | 319 | 51 | 374 | 6.46e-129 | 373 |
| MsG0780041513.01.T01 | AT2G26750 | 61.059 | 321 | 119 | 4 | 4 | 319 | 1 | 320 | 1.76e-128 | 369 |
| MsG0780041513.01.T01 | AT3G05600 | 64.609 | 243 | 81 | 4 | 1 | 238 | 1 | 243 | 2.58e-115 | 333 |
| MsG0780041513.01.T01 | AT4G15955 | 50.000 | 326 | 125 | 4 | 5 | 319 | 6 | 304 | 8.54e-110 | 322 |
| MsG0780041513.01.T01 | AT3G51000 | 45.566 | 327 | 157 | 6 | 3 | 319 | 4 | 319 | 2.56e-101 | 300 |
| MsG0780041513.01.T01 | AT4G15955 | 58.621 | 174 | 62 | 2 | 5 | 168 | 6 | 179 | 4.67e-71 | 218 |
| MsG0780041513.01.T01 | AT4G15955 | 58.182 | 165 | 59 | 2 | 5 | 159 | 6 | 170 | 1.77e-66 | 206 |
Find 104 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATGTTCGGATATTAATTT+TGG | 0.117405 | 7:-91871368 | None:intergenic |
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7:-91870109 | None:intergenic |
| AACTTATTCTAGATGATTAT+TGG | 0.178759 | 7:-91871332 | None:intergenic |
| CAAGGAAGATGTGCCGAATT+TGG | 0.238850 | 7:+91871153 | MsG0780041513.01.T01:CDS |
| TTATTATATATGCAGATTTC+AGG | 0.249339 | 7:+91870210 | MsG0780041513.01.T01:CDS |
| AGCCAAGTGGGCAAGGTGTC+AGG | 0.263626 | 7:-91870782 | None:intergenic |
| GTCTCCAAATTTGAGAAAAC+TGG | 0.263633 | 7:+91870830 | MsG0780041513.01.T01:CDS |
| GAAATTCATTACAGGTGATT+TGG | 0.277422 | 7:+91871078 | MsG0780041513.01.T01:CDS |
| TTAGGGTTTCTACGCGTAAA+TGG | 0.282040 | 7:-91870145 | None:intergenic |
| TGCAAAGATACCAACCAATT+AGG | 0.292935 | 7:-91870078 | None:intergenic |
| CATTACAGGTGATTTGGATA+TGG | 0.296487 | 7:+91871084 | MsG0780041513.01.T01:CDS |
| TATCATGTATACAAGCAAAT+TGG | 0.297186 | 7:-91871541 | None:intergenic |
| AGAAAGCTTTATCATGGATA+TGG | 0.301142 | 7:+91871507 | MsG0780041513.01.T01:three_prime_UTR |
| ATACTTCCCAAGGGAGAGTT+TGG | 0.318913 | 7:+91870737 | MsG0780041513.01.T01:CDS |
| CATGATTGGGGTGCCCTAAT+TGG | 0.343119 | 7:+91870064 | MsG0780041513.01.T01:CDS |
| CCTAAAATCAGAACTGTTGA+TGG | 0.347446 | 7:+91870163 | MsG0780041513.01.T01:CDS |
| CCCCTGACACCTTGCCCACT+TGG | 0.359209 | 7:+91870780 | MsG0780041513.01.T01:CDS |
| TGTTTCTTGTAGCTCATGAT+TGG | 0.362025 | 7:+91870050 | MsG0780041513.01.T01:CDS |
| GTCCTCACAACTCGCAAAAC+TGG | 0.362682 | 7:+91870707 | MsG0780041513.01.T01:CDS |
| GATGGCATGCGTGCTGCTTA+TGG | 0.363820 | 7:+91870181 | MsG0780041513.01.T01:CDS |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7:-91869866 | None:intergenic |
| CGCCACCAGATTGCTGCTCT+CGG | 0.393921 | 7:+91869887 | MsG0780041513.01.T01:CDS |
| CCCAAGGGAGAGTTTGGAAC+TGG | 0.394498 | 7:+91870743 | MsG0780041513.01.T01:CDS |
| GTTTCTTGTAGCTCATGATT+GGG | 0.395980 | 7:+91870051 | MsG0780041513.01.T01:CDS |
| GCAAAGATACCAACCAATTA+GGG | 0.397770 | 7:-91870077 | None:intergenic |
| ACAATCACTTCCTCCAAATT+CGG | 0.398594 | 7:-91871166 | None:intergenic |
| TCCATGATAAAGCTTTCTTA+AGG | 0.403691 | 7:-91871502 | None:intergenic |
| TCACCGTAGCCACGAAGATC+TGG | 0.407123 | 7:-91869935 | None:intergenic |
| GAGGAAGTGATTGTGCAAAA+AGG | 0.414023 | 7:+91871175 | MsG0780041513.01.T01:CDS |
| ATGAGGTGTTTGTTTCTACT+TGG | 0.416581 | 7:-91869646 | None:intergenic |
| TCCTTAAGAAAGCTTTATCA+TGG | 0.423278 | 7:+91871501 | MsG0780041513.01.T01:three_prime_UTR |
| GGCAAGGTGTCAGGGGTATC+CGG | 0.423975 | 7:-91870773 | None:intergenic |
| CCTGTTGTCCTGTTCCTTCA+CGG | 0.424309 | 7:+91869839 | MsG0780041513.01.T01:CDS |
| GTGCCTGTGAAATTCATTAC+AGG | 0.432209 | 7:+91871070 | MsG0780041513.01.T01:CDS |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7:-91870108 | None:intergenic |
| CTAATTGTATTGCAGAAATT+GGG | 0.433325 | 7:+91871012 | MsG0780041513.01.T01:intron |
| AACTCTCCCTTGGGAAGTAT+TGG | 0.434048 | 7:-91870734 | None:intergenic |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7:+91869864 | MsG0780041513.01.T01:CDS |
| GAGAGCCGAGAGCAGCAATC+TGG | 0.444182 | 7:-91869892 | None:intergenic |
| TCCAGTTCCAAACTCTCCCT+TGG | 0.447351 | 7:-91870744 | None:intergenic |
| TTTGAGAAAACTGGCTTCAC+CGG | 0.453864 | 7:+91870839 | MsG0780041513.01.T01:CDS |
| CAGGAAAGCCGTGAAGGAAC+AGG | 0.460850 | 7:-91869847 | None:intergenic |
| GTTGCTCTCATCGACTTGCT+TGG | 0.464883 | 7:+91870016 | MsG0780041513.01.T01:CDS |
| TATTGGTGGAGTACGATTGA+AGG | 0.475610 | 7:-91871315 | None:intergenic |
| ATTGCTGCTCTCGGCTCTCT+CGG | 0.478105 | 7:+91869896 | MsG0780041513.01.T01:CDS |
| CCGTGAAGGAACAGGACAAC+AGG | 0.481846 | 7:-91869839 | None:intergenic |
| AAAATGCATATTGCTGAGAA+AGG | 0.485302 | 7:+91869806 | MsG0780041513.01.T01:CDS |
| TATCCATGGTGGAGGATTCA+AGG | 0.490724 | 7:+91871135 | MsG0780041513.01.T01:CDS |
| CCAGTTCCAAACTCTCCCTT+GGG | 0.499868 | 7:-91870743 | None:intergenic |
| ACACATGAGCTCAATATGTT+CGG | 0.501361 | 7:-91871381 | None:intergenic |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7:+91869855 | MsG0780041513.01.T01:CDS |
| GCTCCAGATCTTCGTGGCTA+CGG | 0.504735 | 7:+91869932 | MsG0780041513.01.T01:CDS |
| TCTCCCTTGGGAAGTATTGG+AGG | 0.509088 | 7:-91870731 | None:intergenic |
| TTCTGTGAGCCAAGTGGGCA+AGG | 0.510522 | 7:-91870789 | None:intergenic |
| ATTGGTGGAGTACGATTGAA+GGG | 0.514542 | 7:-91871314 | None:intergenic |
| CACAGAACAGTGGAAGTGAA+TGG | 0.515742 | 7:+91869779 | MsG0780041513.01.T01:CDS |
| GTTTGGAACTGGATTCAATC+CGG | 0.516376 | 7:+91870754 | MsG0780041513.01.T01:CDS |
| GCTGTTGCTCCAGATCTTCG+TGG | 0.527210 | 7:+91869926 | MsG0780041513.01.T01:CDS |
| TTATTCTAGATGATTATTGG+TGG | 0.533568 | 7:-91871329 | None:intergenic |
| TTCAACAATCAAGAAGCTGC+AGG | 0.535462 | 7:+91871208 | MsG0780041513.01.T01:CDS |
| GTATGCGATATTTATTGAGA+TGG | 0.537512 | 7:-91869687 | None:intergenic |
| TCTATAGTAATTCAATCCTC+CGG | 0.539260 | 7:-91870858 | None:intergenic |
| TTATCTATATTACAGGAACC+TGG | 0.544877 | 7:+91870632 | MsG0780041513.01.T01:intron |
| ATTGCTGAGAAAGGAAAAGA+AGG | 0.548522 | 7:+91869815 | MsG0780041513.01.T01:CDS |
| CTACGGTGACACCGATGCTC+CGG | 0.550138 | 7:+91869949 | MsG0780041513.01.T01:CDS |
| GCCAAGTGGGCAAGGTGTCA+GGG | 0.551540 | 7:-91870781 | None:intergenic |
| AATAGAAGCTGAGATAGCTC+AGG | 0.557396 | 7:+91870658 | MsG0780041513.01.T01:CDS |
| GCGTAGCTGCTAATCGAAGC+CGG | 0.557719 | 7:-91869968 | None:intergenic |
| TCATCTTCTGTGAGCCAAGT+GGG | 0.568184 | 7:-91870794 | None:intergenic |
| AGCCGAGAGCAGCAATCTGG+TGG | 0.568882 | 7:-91869889 | None:intergenic |
| TCACCTGTAATGAATTTCAC+AGG | 0.570947 | 7:-91871073 | None:intergenic |
| TGGTCCTCCAATACTTCCCA+AGG | 0.570977 | 7:+91870727 | MsG0780041513.01.T01:CDS |
| AAACTATCGACCATGTGCAA+TGG | 0.571413 | 7:-91871423 | None:intergenic |
| ATTGGGGTGCCCTAATTGGT+TGG | 0.573060 | 7:+91870068 | MsG0780041513.01.T01:CDS |
| GGAAGATGTGCCGAATTTGG+AGG | 0.573365 | 7:+91871156 | MsG0780041513.01.T01:CDS |
| ATTTATGCATGAAAACTGAA+AGG | 0.578147 | 7:-91871455 | None:intergenic |
| GCTAATCGAAGCCGGAGCAT+CGG | 0.580714 | 7:-91869960 | None:intergenic |
| AAGGAGTATATCCATGGTGG+AGG | 0.581533 | 7:+91871127 | MsG0780041513.01.T01:CDS |
| TGGAACACTGAGACAAACAT+AGG | 0.583516 | 7:-91870125 | None:intergenic |
| TCAACAATCAAGAAGCTGCA+GGG | 0.590827 | 7:+91871209 | MsG0780041513.01.T01:CDS |
| TTGTCTGACTATTTGATGTG+CGG | 0.595124 | 7:-91871280 | None:intergenic |
| TTTCTTGTAGCTCATGATTG+GGG | 0.597857 | 7:+91870052 | MsG0780041513.01.T01:CDS |
| ATGGAGTGGAGTGAAAATCA+AGG | 0.603056 | 7:+91871048 | MsG0780041513.01.T01:CDS |
| GAGAAAACTGGCTTCACCGG+AGG | 0.603917 | 7:+91870842 | MsG0780041513.01.T01:CDS |
| CAACAATCAAGAAGCTGCAG+GGG | 0.604727 | 7:+91871210 | MsG0780041513.01.T01:CDS |
| TCTCATCGACTTGCTTGGTG+TGG | 0.620782 | 7:+91870021 | MsG0780041513.01.T01:CDS |
| CATGTGAAGGAGTATATCCA+TGG | 0.624062 | 7:+91871121 | MsG0780041513.01.T01:CDS |
| GTACACCTCGCCACATGTGA+AGG | 0.626457 | 7:+91871108 | MsG0780041513.01.T01:CDS |
| CCAAGTGGGCAAGGTGTCAG+GGG | 0.627753 | 7:-91870780 | None:intergenic |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7:-91869853 | None:intergenic |
| ATCAAATAGTCAGACAAAGG+TGG | 0.629271 | 7:+91871286 | MsG0780041513.01.T01:three_prime_UTR |
| GAGCTCACAGCACCATGGAG+TGG | 0.632984 | 7:+91871034 | MsG0780041513.01.T01:CDS |
| CACATCAAATAGTCAGACAA+AGG | 0.639564 | 7:+91871283 | MsG0780041513.01.T01:three_prime_UTR |
| TGGATATACTCCTTCACATG+TGG | 0.645588 | 7:-91871118 | None:intergenic |
| AGTCTAAACTCCATTGCACA+TGG | 0.654098 | 7:+91871413 | MsG0780041513.01.T01:three_prime_UTR |
| GAAGCTGAGATAGCTCAGGT+TGG | 0.661961 | 7:+91870662 | MsG0780041513.01.T01:CDS |
| ATCATCTTCTGTGAGCCAAG+TGG | 0.662860 | 7:-91870795 | None:intergenic |
| ATACTCCTTCACATGTGGCG+AGG | 0.664549 | 7:-91871113 | None:intergenic |
| ATTGGGAGCTCACAGCACCA+TGG | 0.668315 | 7:+91871029 | MsG0780041513.01.T01:CDS |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7:+91869769 | MsG0780041513.01.T01:CDS |
| GAAGATCTGGAGCAACAGCA+CGG | 0.677123 | 7:-91869922 | None:intergenic |
| CTTCCTTGAATCCTCCACCA+TGG | 0.680547 | 7:-91871138 | None:intergenic |
| GGTCCTCCAATACTTCCCAA+GGG | 0.690564 | 7:+91870728 | MsG0780041513.01.T01:CDS |
| GTGAAGGAGTATATCCATGG+TGG | 0.691244 | 7:+91871124 | MsG0780041513.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAATCAATTATGTTAAT+CGG | - | Chr7:91870287-91870306 | None:intergenic | 15.0% |
| !! | ATCAATTATTAAGAATTACT+AGG | - | Chr7:91870260-91870279 | None:intergenic | 15.0% |
| !!! | GAATAATTTAACAAAGTATT+AGG | + | Chr7:91870428-91870447 | MsG0780041513.01.T01:intron | 15.0% |
| !!! | TTGTTTTTTATCTATATTAC+AGG | + | Chr7:91870625-91870644 | MsG0780041513.01.T01:intron | 15.0% |
| !! | AACTTATTCTAGATGATTAT+TGG | - | Chr7:91871335-91871354 | None:intergenic | 20.0% |
| !! | AATGATTCCAAATATTATAC+TGG | - | Chr7:91870545-91870564 | None:intergenic | 20.0% |
| !! | AGTTTAAATTATTCACAAAC+AGG | - | Chr7:91870379-91870398 | None:intergenic | 20.0% |
| !! | ATATTTGTCGAAAACAATTA+TGG | - | Chr7:91870919-91870938 | None:intergenic | 20.0% |
| !! | ATTACTAGGAATATTAGTTA+TGG | - | Chr7:91870246-91870265 | None:intergenic | 20.0% |
| !! | GTTTGTGAATAATTTAAACT+AGG | + | Chr7:91870379-91870398 | MsG0780041513.01.T01:intron | 20.0% |
| !! | TTATTATATATGCAGATTTC+AGG | + | Chr7:91870210-91870229 | MsG0780041513.01.T01:CDS | 20.0% |
| !!! | ATAAATCAACTATCCTTTTT+GGG | + | Chr7:91870937-91870956 | MsG0780041513.01.T01:intron | 20.0% |
| !!! | ATATGTTCGGATATTAATTT+TGG | - | Chr7:91871371-91871390 | None:intergenic | 20.0% |
| !!! | TATAAATCAACTATCCTTTT+TGG | + | Chr7:91870936-91870955 | MsG0780041513.01.T01:intron | 20.0% |
| !!! | TATGTTCGGATATTAATTTT+GGG | - | Chr7:91871370-91871389 | None:intergenic | 20.0% |
| ! | ACTAATTGTATTGCAGAAAT+TGG | + | Chr7:91871011-91871030 | MsG0780041513.01.T01:intron | 25.0% |
| ! | ATTTATGCATGAAAACTGAA+AGG | - | Chr7:91871458-91871477 | None:intergenic | 25.0% |
| ! | CTAATTGTATTGCAGAAATT+GGG | + | Chr7:91871012-91871031 | MsG0780041513.01.T01:intron | 25.0% |
| ! | GTTTAACTGTCATTAGAATT+CGG | - | Chr7:91870993-91871012 | None:intergenic | 25.0% |
| ! | TATCATGTATACAAGCAAAT+TGG | - | Chr7:91871544-91871563 | None:intergenic | 25.0% |
| ! | TGATACATGAGAATTAAACA+AGG | + | Chr7:91870457-91870476 | MsG0780041513.01.T01:intron | 25.0% |
| ! | TTATTCTAGATGATTATTGG+TGG | - | Chr7:91871332-91871351 | None:intergenic | 25.0% |
| !! | TAAATCAACTATCCTTTTTG+GGG | + | Chr7:91870938-91870957 | MsG0780041513.01.T01:intron | 25.0% |
| AAAATGCATATTGCTGAGAA+AGG | + | Chr7:91869806-91869825 | MsG0780041513.01.T01:CDS | 30.0% | |
| GAAATTCATTACAGGTGATT+TGG | + | Chr7:91871078-91871097 | MsG0780041513.01.T01:CDS | 30.0% | |
| GAATTGCTATAATGGTAGAT+AGG | + | Chr7:91870592-91870611 | MsG0780041513.01.T01:intron | 30.0% | |
| GTATGCGATATTTATTGAGA+TGG | - | Chr7:91869690-91869709 | None:intergenic | 30.0% | |
| TAATTAATCTCACGCTTCTA+TGG | + | Chr7:91870310-91870329 | MsG0780041513.01.T01:intron | 30.0% | |
| TCCATGATAAAGCTTTCTTA+AGG | - | Chr7:91871505-91871524 | None:intergenic | 30.0% | |
| TCTATAGTAATTCAATCCTC+CGG | - | Chr7:91870861-91870880 | None:intergenic | 30.0% | |
| TCTTGTCAATTTAGATTGAG+TGG | + | Chr7:91870487-91870506 | MsG0780041513.01.T01:intron | 30.0% | |
| TGAAGTGAGAATTGCTATAA+TGG | + | Chr7:91870584-91870603 | MsG0780041513.01.T01:intron | 30.0% | |
| TTATCTATATTACAGGAACC+TGG | + | Chr7:91870632-91870651 | MsG0780041513.01.T01:intron | 30.0% | |
| TTCAAACACAAAAAAGACGA+TGG | + | Chr7:91869745-91869764 | MsG0780041513.01.T01:exon | 30.0% | |
| ! | AGAAAGCTTTATCATGGATA+TGG | + | Chr7:91871507-91871526 | MsG0780041513.01.T01:three_prime_UTR | 30.0% |
| ! | TCCTTAAGAAAGCTTTATCA+TGG | + | Chr7:91871501-91871520 | MsG0780041513.01.T01:three_prime_UTR | 30.0% |
| !! | CATCAACAGTTCTGATTTTA+GGG | - | Chr7:91870165-91870184 | None:intergenic | 30.0% |
| AACACAAAAAAGACGATGGA+AGG | + | Chr7:91869749-91869768 | MsG0780041513.01.T01:exon | 35.0% | |
| ACAATCACTTCCTCCAAATT+CGG | - | Chr7:91871169-91871188 | None:intergenic | 35.0% | |
| ACACATGAGCTCAATATGTT+CGG | - | Chr7:91871384-91871403 | None:intergenic | 35.0% | |
| ATCAAATAGTCAGACAAAGG+TGG | + | Chr7:91871286-91871305 | MsG0780041513.01.T01:three_prime_UTR | 35.0% | |
| ATTGCTGAGAAAGGAAAAGA+AGG | + | Chr7:91869815-91869834 | MsG0780041513.01.T01:CDS | 35.0% | |
| CACATCAAATAGTCAGACAA+AGG | + | Chr7:91871283-91871302 | MsG0780041513.01.T01:three_prime_UTR | 35.0% | |
| CCTAAAATCAGAACTGTTGA+TGG | + | Chr7:91870163-91870182 | MsG0780041513.01.T01:CDS | 35.0% | |
| GCAAAGATACCAACCAATTA+GGG | - | Chr7:91870080-91870099 | None:intergenic | 35.0% | |
| GCACAAATATTTCCCCAAAA+AGG | - | Chr7:91870953-91870972 | None:intergenic | 35.0% | |
| GTCTCCAAATTTGAGAAAAC+TGG | + | Chr7:91870830-91870849 | MsG0780041513.01.T01:CDS | 35.0% | |
| GTTTCTTGTAGCTCATGATT+GGG | + | Chr7:91870051-91870070 | MsG0780041513.01.T01:CDS | 35.0% | |
| TCACCTGTAATGAATTTCAC+AGG | - | Chr7:91871076-91871095 | None:intergenic | 35.0% | |
| TGCAAAGATACCAACCAATT+AGG | - | Chr7:91870081-91870100 | None:intergenic | 35.0% | |
| TGGAGCTCCAGTATAATATT+TGG | + | Chr7:91870535-91870554 | MsG0780041513.01.T01:intron | 35.0% | |
| TGTTTCTTGTAGCTCATGAT+TGG | + | Chr7:91870050-91870069 | MsG0780041513.01.T01:CDS | 35.0% | |
| TTGTCTGACTATTTGATGTG+CGG | - | Chr7:91871283-91871302 | None:intergenic | 35.0% | |
| TTTCTTGTAGCTCATGATTG+GGG | + | Chr7:91870052-91870071 | MsG0780041513.01.T01:CDS | 35.0% | |
| ! | ACATAGGCTTTGATTCTTTC+AGG | - | Chr7:91870112-91870131 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | - | Chr7:91870111-91870130 | None:intergenic | 35.0% |
| ! | CATTACAGGTGATTTGGATA+TGG | + | Chr7:91871084-91871103 | MsG0780041513.01.T01:CDS | 35.0% |
| ! | GAAGCCAGTTTTCTCAAATT+TGG | - | Chr7:91870837-91870856 | None:intergenic | 35.0% |
| ! | GATGATGGTGTGTTATGTTA+TGG | + | Chr7:91870515-91870534 | MsG0780041513.01.T01:intron | 35.0% |
| ! | GATTGAGTGGTTTTTGATGA+TGG | + | Chr7:91870500-91870519 | MsG0780041513.01.T01:intron | 35.0% |
| ! | TACGCATGTTTTCACATAGT+AGG | + | Chr7:91869986-91870005 | MsG0780041513.01.T01:CDS | 35.0% |
| !! | ATGAGGTGTTTGTTTCTACT+TGG | - | Chr7:91869649-91869668 | None:intergenic | 35.0% |
| !! | CCATCAACAGTTCTGATTTT+AGG | - | Chr7:91870166-91870185 | None:intergenic | 35.0% |
| AAACTATCGACCATGTGCAA+TGG | - | Chr7:91871426-91871445 | None:intergenic | 40.0% | |
| AATAGAAGCTGAGATAGCTC+AGG | + | Chr7:91870658-91870677 | MsG0780041513.01.T01:CDS | 40.0% | |
| AGGAATAGAACACAGAACAG+TGG | + | Chr7:91869769-91869788 | MsG0780041513.01.T01:CDS | 40.0% | |
| AGTCTAAACTCCATTGCACA+TGG | + | Chr7:91871413-91871432 | MsG0780041513.01.T01:three_prime_UTR | 40.0% | |
| ATGGAGTGGAGTGAAAATCA+AGG | + | Chr7:91871048-91871067 | MsG0780041513.01.T01:CDS | 40.0% | |
| ATTGGTGGAGTACGATTGAA+GGG | - | Chr7:91871317-91871336 | None:intergenic | 40.0% | |
| GAGGAAGTGATTGTGCAAAA+AGG | + | Chr7:91871175-91871194 | MsG0780041513.01.T01:CDS | 40.0% | |
| GGAAATATTTGTGCAAGCAG+AGG | + | Chr7:91870959-91870978 | MsG0780041513.01.T01:intron | 40.0% | |
| GTGCCTGTGAAATTCATTAC+AGG | + | Chr7:91871070-91871089 | MsG0780041513.01.T01:CDS | 40.0% | |
| TATTGGTGGAGTACGATTGA+AGG | - | Chr7:91871318-91871337 | None:intergenic | 40.0% | |
| TCAACAATCAAGAAGCTGCA+GGG | + | Chr7:91871209-91871228 | MsG0780041513.01.T01:CDS | 40.0% | |
| TGGAACACTGAGACAAACAT+AGG | - | Chr7:91870128-91870147 | None:intergenic | 40.0% | |
| TGGATATACTCCTTCACATG+TGG | - | Chr7:91871121-91871140 | None:intergenic | 40.0% | |
| TTAGGGTTTCTACGCGTAAA+TGG | - | Chr7:91870148-91870167 | None:intergenic | 40.0% | |
| TTCAACAATCAAGAAGCTGC+AGG | + | Chr7:91871208-91871227 | MsG0780041513.01.T01:CDS | 40.0% | |
| ! | ATCTCAGCTTCTATTTTGCC+AGG | - | Chr7:91870653-91870672 | None:intergenic | 40.0% |
| ! | CATGTGAAGGAGTATATCCA+TGG | + | Chr7:91871121-91871140 | MsG0780041513.01.T01:CDS | 40.0% |
| ! | GATGGTTTGAGCGATTTTAG+CGG | - | Chr7:91869672-91869691 | None:intergenic | 40.0% |
| ! | GTTTGGAACTGGATTCAATC+CGG | + | Chr7:91870754-91870773 | MsG0780041513.01.T01:CDS | 40.0% |
| ! | TTGATTTTCACTCCACTCCA+TGG | - | Chr7:91871049-91871068 | None:intergenic | 40.0% |
| ! | TTTGAGAAAACTGGCTTCAC+CGG | + | Chr7:91870839-91870858 | MsG0780041513.01.T01:CDS | 40.0% |
| ATACTTCCCAAGGGAGAGTT+TGG | + | Chr7:91870737-91870756 | MsG0780041513.01.T01:CDS | 45.0% | |
| ATCATCTTCTGTGAGCCAAG+TGG | - | Chr7:91870798-91870817 | None:intergenic | 45.0% | |
| CAACAATCAAGAAGCTGCAG+GGG | + | Chr7:91871210-91871229 | MsG0780041513.01.T01:CDS | 45.0% | |
| CAAGGAAGATGTGCCGAATT+TGG | + | Chr7:91871153-91871172 | MsG0780041513.01.T01:CDS | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | + | Chr7:91869779-91869798 | MsG0780041513.01.T01:CDS | 45.0% | |
| TCATCTTCTGTGAGCCAAGT+GGG | - | Chr7:91870797-91870816 | None:intergenic | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | + | Chr7:91869864-91869883 | MsG0780041513.01.T01:CDS | 45.0% | |
| ! | AACTCTCCCTTGGGAAGTAT+TGG | - | Chr7:91870737-91870756 | None:intergenic | 45.0% |
| ! | AAGGAGTATATCCATGGTGG+AGG | + | Chr7:91871127-91871146 | MsG0780041513.01.T01:CDS | 45.0% |
| ! | GTGAAGGAGTATATCCATGG+TGG | + | Chr7:91871124-91871143 | MsG0780041513.01.T01:CDS | 45.0% |
| ! | TATCCATGGTGGAGGATTCA+AGG | + | Chr7:91871135-91871154 | MsG0780041513.01.T01:CDS | 45.0% |
| !! | TTGAGCGATTTTAGCGGATG+AGG | - | Chr7:91869666-91869685 | None:intergenic | 45.0% |
| AGAGTTCAGGAAAGCCGTGA+AGG | - | Chr7:91869856-91869875 | None:intergenic | 50.0% | |
| ATACTCCTTCACATGTGGCG+AGG | - | Chr7:91871116-91871135 | None:intergenic | 50.0% | |
| CCAGTTCCAAACTCTCCCTT+GGG | - | Chr7:91870746-91870765 | None:intergenic | 50.0% | |
| CCTGTTGTCCTGTTCCTTCA+CGG | + | Chr7:91869839-91869858 | MsG0780041513.01.T01:CDS | 50.0% | |
| CTCACGCTTCTATGGTGTGT+TGG | + | Chr7:91870318-91870337 | MsG0780041513.01.T01:intron | 50.0% | |
| CTTCCTTGAATCCTCCACCA+TGG | - | Chr7:91871141-91871160 | None:intergenic | 50.0% | |
| GAAGCTGAGATAGCTCAGGT+TGG | + | Chr7:91870662-91870681 | MsG0780041513.01.T01:CDS | 50.0% | |
| GGAAGATGTGCCGAATTTGG+AGG | + | Chr7:91871156-91871175 | MsG0780041513.01.T01:CDS | 50.0% | |
| GGTCCTCCAATACTTCCCAA+GGG | + | Chr7:91870728-91870747 | MsG0780041513.01.T01:CDS | 50.0% | |
| GTCCTCACAACTCGCAAAAC+TGG | + | Chr7:91870707-91870726 | MsG0780041513.01.T01:CDS | 50.0% | |
| TCCAGTTCCAAACTCTCCCT+TGG | - | Chr7:91870747-91870766 | None:intergenic | 50.0% | |
| TGGTCCTCCAATACTTCCCA+AGG | + | Chr7:91870727-91870746 | MsG0780041513.01.T01:CDS | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | + | Chr7:91869855-91869874 | MsG0780041513.01.T01:CDS | 50.0% | |
| ! | ATTGGGGTGCCCTAATTGGT+TGG | + | Chr7:91870068-91870087 | MsG0780041513.01.T01:CDS | 50.0% |
| ! | CATGATTGGGGTGCCCTAAT+TGG | + | Chr7:91870064-91870083 | MsG0780041513.01.T01:CDS | 50.0% |
| ! | GAAGATCTGGAGCAACAGCA+CGG | - | Chr7:91869925-91869944 | None:intergenic | 50.0% |
| ! | GACCAGTTTTGCGAGTTGTG+AGG | - | Chr7:91870712-91870731 | None:intergenic | 50.0% |
| !! | GTTGCTCTCATCGACTTGCT+TGG | + | Chr7:91870016-91870035 | MsG0780041513.01.T01:CDS | 50.0% |
| !! | TCTCATCGACTTGCTTGGTG+TGG | + | Chr7:91870021-91870040 | MsG0780041513.01.T01:CDS | 50.0% |
| !! | TCTCCCTTGGGAAGTATTGG+AGG | - | Chr7:91870734-91870753 | None:intergenic | 50.0% |
| ATTGCTGCTCTCGGCTCTCT+CGG | + | Chr7:91869896-91869915 | MsG0780041513.01.T01:CDS | 55.0% | |
| ATTGGGAGCTCACAGCACCA+TGG | + | Chr7:91871029-91871048 | MsG0780041513.01.T01:CDS | 55.0% | |
| CAGGAAAGCCGTGAAGGAAC+AGG | - | Chr7:91869850-91869869 | None:intergenic | 55.0% | |
| CCGTGAAGGAACAGGACAAC+AGG | - | Chr7:91869842-91869861 | None:intergenic | 55.0% | |
| GCGTAGCTGCTAATCGAAGC+CGG | - | Chr7:91869971-91869990 | None:intergenic | 55.0% | |
| GCTAATCGAAGCCGGAGCAT+CGG | - | Chr7:91869963-91869982 | None:intergenic | 55.0% | |
| GCTCCAGATCTTCGTGGCTA+CGG | + | Chr7:91869932-91869951 | MsG0780041513.01.T01:CDS | 55.0% | |
| GCTGTTGCTCCAGATCTTCG+TGG | + | Chr7:91869926-91869945 | MsG0780041513.01.T01:CDS | 55.0% | |
| GTACACCTCGCCACATGTGA+AGG | + | Chr7:91871108-91871127 | MsG0780041513.01.T01:CDS | 55.0% | |
| TCACCGTAGCCACGAAGATC+TGG | - | Chr7:91869938-91869957 | None:intergenic | 55.0% | |
| TTCTGTGAGCCAAGTGGGCA+AGG | - | Chr7:91870792-91870811 | None:intergenic | 55.0% | |
| ! | CCCAAGGGAGAGTTTGGAAC+TGG | + | Chr7:91870743-91870762 | MsG0780041513.01.T01:CDS | 55.0% |
| ! | GAGAAAACTGGCTTCACCGG+AGG | + | Chr7:91870842-91870861 | MsG0780041513.01.T01:CDS | 55.0% |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | - | Chr7:91869869-91869888 | None:intergenic | 55.0% |
| !! | GATGGCATGCGTGCTGCTTA+TGG | + | Chr7:91870181-91870200 | MsG0780041513.01.T01:CDS | 55.0% |
| AGCCGAGAGCAGCAATCTGG+TGG | - | Chr7:91869892-91869911 | None:intergenic | 60.0% | |
| CGCCACCAGATTGCTGCTCT+CGG | + | Chr7:91869887-91869906 | MsG0780041513.01.T01:CDS | 60.0% | |
| CTACGGTGACACCGATGCTC+CGG | + | Chr7:91869949-91869968 | MsG0780041513.01.T01:CDS | 60.0% | |
| GAGAGCCGAGAGCAGCAATC+TGG | - | Chr7:91869895-91869914 | None:intergenic | 60.0% | |
| GAGCTCACAGCACCATGGAG+TGG | + | Chr7:91871034-91871053 | MsG0780041513.01.T01:CDS | 60.0% | |
| ! | AGCCAAGTGGGCAAGGTGTC+AGG | - | Chr7:91870785-91870804 | None:intergenic | 60.0% |
| ! | CCAAGTGGGCAAGGTGTCAG+GGG | - | Chr7:91870783-91870802 | None:intergenic | 60.0% |
| ! | GCCAAGTGGGCAAGGTGTCA+GGG | - | Chr7:91870784-91870803 | None:intergenic | 60.0% |
| !! | GGCAAGGTGTCAGGGGTATC+CGG | - | Chr7:91870776-91870795 | None:intergenic | 60.0% |
| CCCCTGACACCTTGCCCACT+TGG | + | Chr7:91870780-91870799 | MsG0780041513.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 91869637 | 91871585 | 91869637 | ID=MsG0780041513.01;Name=MsG0780041513.01 |
| Chr7 | mRNA | 91869637 | 91871585 | 91869637 | ID=MsG0780041513.01.T01;Parent=MsG0780041513.01;Name=MsG0780041513.01.T01;_AED=0.46;_eAED=0.46;_QI=127|1|1|1|1|1|3|312|319 |
| Chr7 | exon | 91869637 | 91870231 | 91869637 | ID=MsG0780041513.01.T01:exon:53405;Parent=MsG0780041513.01.T01 |
| Chr7 | exon | 91870647 | 91870891 | 91870647 | ID=MsG0780041513.01.T01:exon:53406;Parent=MsG0780041513.01.T01 |
| Chr7 | exon | 91871027 | 91871585 | 91871027 | ID=MsG0780041513.01.T01:exon:53407;Parent=MsG0780041513.01.T01 |
| Chr7 | five_prime_UTR | 91869637 | 91869763 | 91869637 | ID=MsG0780041513.01.T01:five_prime_utr;Parent=MsG0780041513.01.T01 |
| Chr7 | CDS | 91869764 | 91870231 | 91869764 | ID=MsG0780041513.01.T01:cds;Parent=MsG0780041513.01.T01 |
| Chr7 | CDS | 91870647 | 91870891 | 91870647 | ID=MsG0780041513.01.T01:cds;Parent=MsG0780041513.01.T01 |
| Chr7 | CDS | 91871027 | 91871273 | 91871027 | ID=MsG0780041513.01.T01:cds;Parent=MsG0780041513.01.T01 |
| Chr7 | three_prime_UTR | 91871274 | 91871585 | 91871274 | ID=MsG0780041513.01.T01:three_prime_utr;Parent=MsG0780041513.01.T01 |
| Gene Sequence |
| Protein sequence |
