AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041514.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041514.01.T01 MTR_7g112960 86.520 319 43 0 1 319 1 319 0.0 593
MsG0780041514.01.T01 MTR_7g112963 84.953 319 48 0 1 319 1 319 0.0 585
MsG0780041514.01.T01 MTR_7g112970 86.207 319 41 1 1 319 1 316 0.0 584
MsG0780041514.01.T01 MTR_7g113010 95.730 281 12 0 1 281 1 281 0.0 568
MsG0780041514.01.T01 MTR_7g113020 75.389 321 75 2 1 319 1 319 0.0 516
MsG0780041514.01.T01 MTR_7g113050 74.143 321 79 2 1 319 1 319 0.0 509
MsG0780041514.01.T01 MTR_7g113030 73.041 319 86 0 1 319 1 319 0.0 506
MsG0780041514.01.T01 MTR_7g112615 73.520 321 81 2 1 319 1 319 0.0 503
MsG0780041514.01.T01 MTR_7g112620 72.274 321 85 2 1 319 1 319 2.59e-180 501
MsG0780041514.01.T01 MTR_4g005160 66.154 325 101 5 1 319 1 322 6.19e-159 447
MsG0780041514.01.T01 MTR_4g120240 60.125 321 124 3 1 319 37 355 3.82e-146 416
MsG0780041514.01.T01 MTR_7g108825 60.625 320 122 3 1 319 1 317 9.21e-144 408
MsG0780041514.01.T01 MTR_7g113050 73.333 240 60 2 1 238 1 238 2.97e-132 376
MsG0780041514.01.T01 MTR_7g112615 72.500 240 62 2 1 238 1 238 1.34e-130 372
MsG0780041514.01.T01 MTR_8g076680 47.826 322 156 5 1 318 3 316 8.91e-106 312
MsG0780041514.01.T01 MTR_7g108825 60.669 239 90 3 1 238 1 236 4.85e-102 299
MsG0780041514.01.T01 MTR_7g112615 81.132 159 30 0 1 159 1 159 3.17e-98 287
MsG0780041514.01.T01 MTR_1g083480 74.843 159 36 2 1 156 1 158 2.03e-85 254
MsG0780041514.01.T01 MTR_8g076680 47.934 242 116 3 1 238 3 238 2.43e-80 244
MsG0780041514.01.T01 MTR_2g090240 38.199 322 183 7 1 318 1 310 8.76e-68 214
MsG0780041514.01.T01 MTR_2g090245 38.509 322 182 8 1 318 1 310 4.93e-67 213
MsG0780041514.01.T01 MTR_4g089060 35.714 322 192 6 1 319 1 310 1.19e-66 211
MsG0780041514.01.T01 MTR_4g089040 36.025 322 191 6 1 319 1 310 1.96e-65 208
MsG0780041514.01.T01 MTR_7g112910 47.012 251 74 7 72 319 1 195 1.37e-64 202
MsG0780041514.01.T01 MTR_4g089060 33.238 349 191 7 1 319 1 337 1.54e-61 199
MsG0780041514.01.T01 MTR_4g089060 37.339 233 137 3 1 231 1 226 8.99e-56 181
MsG0780041514.01.T01 MTR_3g024250 76.415 106 25 0 47 152 2 107 1.65e-55 177
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041514.01.T01 AT3G05600 62.654 324 114 4 1 318 1 323 1.64e-154 436
MsG0780041514.01.T01 AT4G02340 59.688 320 124 3 1 319 1 316 2.76e-144 410
MsG0780041514.01.T01 AT4G15960 53.538 325 144 3 1 319 51 374 8.03e-129 372
MsG0780041514.01.T01 AT2G26740 56.522 322 133 4 4 319 1 321 2.94e-123 356
MsG0780041514.01.T01 AT2G26750 55.452 321 137 4 4 319 1 320 1.15e-119 347
MsG0780041514.01.T01 AT3G05600 64.344 244 80 4 1 238 1 243 1.78e-115 333
MsG0780041514.01.T01 AT4G15955 50.462 325 125 5 5 319 6 304 1.94e-111 325
MsG0780041514.01.T01 AT3G51000 50.000 318 152 6 4 318 5 318 1.06e-108 319
MsG0780041514.01.T01 AT4G15955 61.850 173 56 2 5 167 6 178 1.56e-74 227
MsG0780041514.01.T01 AT4G15955 61.212 165 54 2 5 159 6 170 9.46e-70 215

Find 94 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCTTACAGGTCGGAATTC+TGG 0.183747 7:+91874548 MsG0780041514.01.T01:CDS
CCTTCTTTGGGTAGGATTAA+TGG 0.188302 7:-91874572 None:intergenic
ATAATCACTTCCTCCAAATT+TGG 0.201843 7:-91875524 None:intergenic
TAAGAAAGATGTGCCAAATT+TGG 0.214008 7:+91875511 MsG0780041514.01.T01:CDS
GATATAGTTTATGCTTCTTT+TGG 0.237327 7:+91875458 MsG0780041514.01.T01:CDS
ATGAGATAACAAGCCTTCTT+TGG 0.249562 7:-91874585 None:intergenic
CCATCAACAGGTTTCACTTT+GGG 0.262116 7:-91873511 None:intergenic
TAACTTCCTCAGCAGCTTCT+TGG 0.283005 7:-91875574 None:intergenic
ATACAAAGCCCCTCCCTTCT+TGG 0.294620 7:+91874621 MsG0780041514.01.T01:CDS
GGTTTCACTTTGGGGTTTCT+TGG 0.301325 7:-91873502 None:intergenic
GTGATCAAGGCTATGCTTAC+AGG 0.301645 7:+91874536 MsG0780041514.01.T01:CDS
TTTCCTTGTGGCTCATGATT+GGG 0.323649 7:+91873399 MsG0780041514.01.T01:CDS
GCTTCTAAATTTGAAAAGTC+GGG 0.325588 7:+91874671 MsG0780041514.01.T01:CDS
CATGAGCCACAAGGAAAATT+TGG 0.330260 7:-91873393 None:intergenic
GAAGTTCATCACAGGCGATT+TGG 0.348503 7:+91875436 MsG0780041514.01.T01:CDS
TGCTTACAGGTCGGAATTCT+GGG 0.353613 7:+91874549 MsG0780041514.01.T01:CDS
TGAGATTTCTATAGTAGTTA+AGG 0.359150 7:-91874706 None:intergenic
CATGATTGGGGTGCCATCAT+TGG 0.372270 7:+91873412 MsG0780041514.01.T01:CDS
GATGGCATGCAAGCTTTGTT+TGG 0.377529 7:+91873529 MsG0780041514.01.T01:CDS
CTGTTATGTTCATAGGAATT+GGG 0.394679 7:+91875370 MsG0780041514.01.T01:intron
CGCCACCAGATTGCGGCTCT+CGG 0.403229 7:+91873235 MsG0780041514.01.T01:CDS
TTATTATATCTGCAGATTCC+AGG 0.403584 7:+91873558 MsG0780041514.01.T01:CDS
TCACCGTAGCCACGAAGATC+TGG 0.407123 7:-91873283 None:intergenic
ACATAAGCCTTGACTTTCTC+AGG 0.407263 7:-91873457 None:intergenic
CGCCAAGAGTACCAGATATC+AGG 0.407327 7:-91873214 None:intergenic
TTCCTGATATCTGGTACTCT+TGG 0.411858 7:+91873212 MsG0780041514.01.T01:CDS
AATTCGGCTTCTGCTTTCCC+TGG 0.413011 7:-91874491 None:intergenic
ATAGCCTTGATCACAAGTTC+TGG 0.414013 7:-91874527 None:intergenic
CCCAAAGTGAAACCTGTTGA+TGG 0.418758 7:+91873511 MsG0780041514.01.T01:CDS
TGAGATAACAAGCCTTCTTT+GGG 0.420102 7:-91874584 None:intergenic
TGGGCTACCCTTGGCAAATT+CGG 0.422231 7:-91874507 None:intergenic
GGCTTTGTATTTGAAACATC+GGG 0.424711 7:-91874608 None:intergenic
TGCTTCTAAATTTGAAAAGT+CGG 0.427783 7:+91874670 MsG0780041514.01.T01:CDS
AAAGCTTGCATGCCATCAAC+AGG 0.432275 7:-91873523 None:intergenic
GAGAGCCGAGAGCCGCAATC+TGG 0.462159 7:-91873240 None:intergenic
GCCATCAACAGGTTTCACTT+TGG 0.465827 7:-91873512 None:intergenic
CATCAACAGGTTTCACTTTG+GGG 0.472252 7:-91873510 None:intergenic
CTTCACTGGAACTTTAACCT+TGG 0.473353 7:-91875417 None:intergenic
TTTGGAGGAAGTGATTATAC+AGG 0.473618 7:+91875529 MsG0780041514.01.T01:CDS
CACAAGTTCTGGGCTACCCT+TGG 0.489572 7:-91874516 None:intergenic
AAAATGCATGTCGCAGAGAA+AGG 0.491525 7:+91873154 MsG0780041514.01.T01:CDS
TAGCCTTGATCACAAGTTCT+GGG 0.495550 7:-91874526 None:intergenic
ATTGCGGCTCTCGGCTCTCT+CGG 0.495623 7:+91873244 MsG0780041514.01.T01:CDS
GAAAGATGTGCCAAATTTGG+AGG 0.498854 7:+91875514 MsG0780041514.01.T01:CDS
TCGCCTGTGATGAACTTCAC+TGG 0.499059 7:-91875431 None:intergenic
GCTCCAGATCTTCGTGGCTA+CGG 0.504735 7:+91873280 MsG0780041514.01.T01:CDS
CAATTCATGTGACAGGAACC+AGG 0.511502 7:+91874473 MsG0780041514.01.T01:intron
TCTTCTTGTGAGAGCCAAGA+AGG 0.512333 7:-91874635 None:intergenic
CCATGAAGGAACAAAACAAC+AGG 0.513488 7:-91873187 None:intergenic
TAGCCCAGAACTTGTGATCA+AGG 0.517411 7:+91874523 MsG0780041514.01.T01:CDS
TTCCTTGTGGCTCATGATTG+GGG 0.518936 7:+91873400 MsG0780041514.01.T01:CDS
ACAGAGATGCCAACCAATGA+TGG 0.522500 7:-91873425 None:intergenic
CGTGTAGCTACTAACTGAAG+TGG 0.524060 7:-91873317 None:intergenic
CCATTAATCCTACCCAAAGA+AGG 0.525729 7:+91874572 MsG0780041514.01.T01:CDS
GCTGTTGCTCCAGATCTTCG+TGG 0.527210 7:+91873274 MsG0780041514.01.T01:CDS
TTGTGAGAGCCAAGAAGGGA+GGG 0.528638 7:-91874630 None:intergenic
GAGCTCACAGCAGCATGGAC+CGG 0.535565 7:+91875392 MsG0780041514.01.T01:CDS
AGCCGAGAGCCGCAATCTGG+TGG 0.549085 7:-91873237 None:intergenic
GTCGCAGAGAAAGGAAAAGA+AGG 0.549089 7:+91873163 MsG0780041514.01.T01:CDS
ATTGGGGTGCCATCATTGGT+TGG 0.551746 7:+91873416 MsG0780041514.01.T01:CDS
ATAACAAGCCTTCTTTGGGT+AGG 0.551798 7:-91874580 None:intergenic
GGGCTTTGTATTTGAAACAT+CGG 0.553097 7:-91874609 None:intergenic
CACAGAACAGTGGAAGTGAA+TGG 0.555575 7:+91873127 MsG0780041514.01.T01:CDS
TGGAACTTTAACCTTGGCTC+CGG 0.556514 7:-91875411 None:intergenic
TGTGAGAGCCAAGAAGGGAG+GGG 0.561355 7:-91874629 None:intergenic
CTTCTAAATTTGAAAAGTCG+GGG 0.579960 7:+91874672 MsG0780041514.01.T01:CDS
AGCAGCATGGACCGGAGCCA+AGG 0.582534 7:+91875400 MsG0780041514.01.T01:CDS
AGCAGAAGCCGAATTTGCCA+AGG 0.586217 7:+91874499 MsG0780041514.01.T01:CDS
TTTGAAAAGTCGGGGTTCAG+TGG 0.587683 7:+91874680 MsG0780041514.01.T01:CDS
GAAAAGTCGGGGTTCAGTGG+TGG 0.588050 7:+91874683 MsG0780041514.01.T01:CDS
ACTAACTGAAGTGGGAGCAT+CGG 0.592618 7:-91873308 None:intergenic
CTCTTGGCGCCACCAGATTG+CGG 0.594106 7:+91873228 MsG0780041514.01.T01:CDS
CTTGTGAGAGCCAAGAAGGG+AGG 0.599078 7:-91874631 None:intergenic
GTTTCGTCCTGAGAAAGTCA+AGG 0.602031 7:+91873450 MsG0780041514.01.T01:CDS
GTTGCTCTAATTGACTCACT+TGG 0.604533 7:+91873364 MsG0780041514.01.T01:CDS
TTGGGGTTTCTTGGTAACAA+CGG 0.609164 7:-91873493 None:intergenic
GTTCCAGTGAAGTTCATCAC+AGG 0.615248 7:+91875428 MsG0780041514.01.T01:CDS
CACCCCAATCATGAGCCACA+AGG 0.623498 7:-91873402 None:intergenic
TAACAACCAAGAAGCTGCTG+AGG 0.623686 7:+91875568 MsG0780041514.01.T01:CDS
CTTCTTGTGAGAGCCAAGAA+GGG 0.624050 7:-91874634 None:intergenic
TCTAATTGACTCACTTGGTG+TGG 0.624858 7:+91873369 MsG0780041514.01.T01:CDS
AGATATCAGGAAAACCATGA+AGG 0.624982 7:-91873201 None:intergenic
ATTGGGAGCTCACAGCAGCA+TGG 0.628562 7:+91875387 MsG0780041514.01.T01:CDS
AGGAGTAGAGCACAGAACAG+TGG 0.630212 7:+91873117 MsG0780041514.01.T01:CDS
AGTGATTATACAGGAAGGTG+TGG 0.637871 7:+91875538 MsG0780041514.01.T01:CDS
AATTCATGTGACAGGAACCA+GGG 0.640650 7:+91874474 MsG0780041514.01.T01:intron
GAGGAAGTGATTATACAGGA+AGG 0.643542 7:+91875533 MsG0780041514.01.T01:CDS
AAGCAATACATCGAGAGTGG+TGG 0.645763 7:+91875485 MsG0780041514.01.T01:CDS
GTGTAGCTACTAACTGAAGT+GGG 0.649111 7:-91873316 None:intergenic
GCGAAGCAATACATCGAGAG+TGG 0.652428 7:+91875482 MsG0780041514.01.T01:CDS
GAAGATCTGGAGCAACAGCA+CGG 0.677123 7:-91873270 None:intergenic
TCAAGGCTATGCTTACAGGT+CGG 0.686752 7:+91874540 MsG0780041514.01.T01:CDS
GCAGAAGCCGAATTTGCCAA+GGG 0.692748 7:+91874500 MsG0780041514.01.T01:CDS
TTGGTAACAACGGAACACTG+AGG 0.754230 7:-91873483 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTAAATAATAAATATT+TGG + Chr7:91875000-91875019 MsG0780041514.01.T01:intron 0.0%
!! AAAATGAAAGAAATAAAAAT+AGG - Chr7:91874743-91874762 None:intergenic 10.0%
!! AAATGAAAGAAATAAAAATA+GGG - Chr7:91874742-91874761 None:intergenic 10.0%
!!! ACAAGTTTTTTAAAGTTAAA+GGG - Chr7:91873889-91873908 None:intergenic 15.0%
!!! ATAATTTGTGACAATTTTTT+TGG + Chr7:91874037-91874056 MsG0780041514.01.T01:intron 15.0%
!!! TTTTCCATTATTAATTAATC+CGG - Chr7:91874363-91874382 None:intergenic 15.0%
!! AACATGTTTGAATTTATGTT+GGG - Chr7:91875231-91875250 None:intergenic 20.0%
!! AGTGCAAATAAACATATAAA+TGG - Chr7:91874805-91874824 None:intergenic 20.0%
!! GAAAAAGAAAAAAAGTTCAA+AGG + Chr7:91873854-91873873 MsG0780041514.01.T01:intron 20.0%
!! TAATAAATATTTGGTATGTG+CGG + Chr7:91875009-91875028 MsG0780041514.01.T01:intron 20.0%
!! TGTACGATCATAATATAAAA+AGG - Chr7:91874834-91874853 None:intergenic 20.0%
!!! AATAATGCATTCACTTATTT+TGG + Chr7:91874397-91874416 MsG0780041514.01.T01:intron 20.0%
!!! ATTTTCCTTTAACAAAATGT+GGG + Chr7:91874161-91874180 MsG0780041514.01.T01:intron 20.0%
!!! ATTTTGTTTATAATTGAGAC+CGG + Chr7:91874341-91874360 MsG0780041514.01.T01:intron 20.0%
!!! CACAAGTTTTTTAAAGTTAA+AGG - Chr7:91873890-91873909 None:intergenic 20.0%
!!! GGTTAATTTTTACTTACATA+AGG + Chr7:91873639-91873658 MsG0780041514.01.T01:intron 20.0%
!!! TATATGTTTATTTGCACTTT+TGG + Chr7:91874807-91874826 MsG0780041514.01.T01:intron 20.0%
!!! TTATTTTGGAATTTACAGAT+GGG + Chr7:91874411-91874430 MsG0780041514.01.T01:intron 20.0%
! AATTCTTCTGTTATGTTCAT+AGG + Chr7:91875363-91875382 MsG0780041514.01.T01:intron 25.0%
! AGTTACTAAAACAAATTCGA+AGG - Chr7:91873666-91873685 None:intergenic 25.0%
! ATTATTGCATAAACCAAAGA+AGG - Chr7:91873780-91873799 None:intergenic 25.0%
! CAAACACATGTAAAATTATC+AGG - Chr7:91873920-91873939 None:intergenic 25.0%
! GAACATGTTTGAATTTATGT+TGG - Chr7:91875232-91875251 None:intergenic 25.0%
! GTTACTAAAACAAATTCGAA+GGG - Chr7:91873665-91873684 None:intergenic 25.0%
! TGAGATTTCTATAGTAGTTA+AGG - Chr7:91874709-91874728 None:intergenic 25.0%
! TGCTTCTAAATTTGAAAAGT+CGG + Chr7:91874670-91874689 MsG0780041514.01.T01:CDS 25.0%
! TTCAGAAAAATACAACACTT+CGG - Chr7:91875035-91875054 None:intergenic 25.0%
! TTGTAACGATTGAAACATAT+AGG + Chr7:91874888-91874907 MsG0780041514.01.T01:intron 25.0%
! TTTGAATTTATGTTGGGATT+TGG - Chr7:91875225-91875244 None:intergenic 25.0%
! TTTGAGTGAACACAATAATT+TGG + Chr7:91874915-91874934 MsG0780041514.01.T01:intron 25.0%
!! CATTTTCCTTTAACAAAATG+TGG + Chr7:91874160-91874179 MsG0780041514.01.T01:intron 25.0%
!! CTTGAAATGCTTTTATACAT+TGG + Chr7:91873618-91873637 MsG0780041514.01.T01:intron 25.0%
!! GATATAGTTTATGCTTCTTT+TGG + Chr7:91875458-91875477 MsG0780041514.01.T01:CDS 25.0%
!!! ATTCTTTTTTGGATATGAAG+GGG + Chr7:91874293-91874312 MsG0780041514.01.T01:intron 25.0%
!!! CTTATTTTGGAATTTACAGA+TGG + Chr7:91874410-91874429 MsG0780041514.01.T01:intron 25.0%
!!! GATTCTTTTTTGGATATGAA+GGG + Chr7:91874292-91874311 MsG0780041514.01.T01:intron 25.0%
!!! GTTTAAACGTGATTCTTTTT+TGG + Chr7:91874282-91874301 MsG0780041514.01.T01:intron 25.0%
!!! TGATTCTTTTTTGGATATGA+AGG + Chr7:91874291-91874310 MsG0780041514.01.T01:intron 25.0%
AAATGCAAGCTTTCAATTTG+TGG + Chr7:91873686-91873705 MsG0780041514.01.T01:intron 30.0%
AACATGTTCGGATTTATGTT+GGG - Chr7:91875271-91875290 None:intergenic 30.0%
AATATTCCAATTCATGTGAC+AGG + Chr7:91874466-91874485 MsG0780041514.01.T01:intron 30.0%
AATTTGTGGTTGTGTTAGAA+TGG + Chr7:91873700-91873719 MsG0780041514.01.T01:intron 30.0%
AGTTACAATCTATGGAAGAT+AGG + Chr7:91874065-91874084 MsG0780041514.01.T01:intron 30.0%
ATAATCACTTCCTCCAAATT+TGG - Chr7:91875527-91875546 None:intergenic 30.0%
ATTTGTGGTTGTGTTAGAAT+GGG + Chr7:91873701-91873720 MsG0780041514.01.T01:intron 30.0%
CAATCTCACATATTTAGAAG+AGG + Chr7:91874939-91874958 MsG0780041514.01.T01:intron 30.0%
CTCTCTCAATATGATGTTAA+GGG + Chr7:91874128-91874147 MsG0780041514.01.T01:intron 30.0%
CTGTTATGTTCATAGGAATT+GGG + Chr7:91875370-91875389 MsG0780041514.01.T01:intron 30.0%
CTTCTAAATTTGAAAAGTCG+GGG + Chr7:91874672-91874691 MsG0780041514.01.T01:CDS 30.0%
GAGACCGGATTAATTAATAA+TGG + Chr7:91874356-91874375 MsG0780041514.01.T01:intron 30.0%
GCTTCTAAATTTGAAAAGTC+GGG + Chr7:91874671-91874690 MsG0780041514.01.T01:CDS 30.0%
GTTACAATCTATGGAAGATA+GGG + Chr7:91874066-91874085 MsG0780041514.01.T01:intron 30.0%
TAAGAAAGATGTGCCAAATT+TGG + Chr7:91875511-91875530 MsG0780041514.01.T01:CDS 30.0%
TCAAAATACAAAAACGAACC+TGG - Chr7:91873579-91873598 None:intergenic 30.0%
TCTCTCTCAATATGATGTTA+AGG + Chr7:91874127-91874146 MsG0780041514.01.T01:intron 30.0%
TCTGTTATGTTCATAGGAAT+TGG + Chr7:91875369-91875388 MsG0780041514.01.T01:intron 30.0%
TGTCACATGAATTGGAATAT+TGG - Chr7:91874467-91874486 None:intergenic 30.0%
TTAACCACATCAAAATAGTC+AGG - Chr7:91875176-91875195 None:intergenic 30.0%
TTATTATATCTGCAGATTCC+AGG + Chr7:91873558-91873577 MsG0780041514.01.T01:CDS 30.0%
! CAATACCCACATTTTGTTAA+AGG - Chr7:91874169-91874188 None:intergenic 30.0%
!!! AAAAAGTTCAAAGGCACTTT+TGG + Chr7:91873863-91873882 MsG0780041514.01.T01:intron 30.0%
!!! TTCTTTTTTGGATATGAAGG+GGG + Chr7:91874294-91874313 MsG0780041514.01.T01:intron 30.0%
AAATCCGAACATGTTCATAG+AGG + Chr7:91875276-91875295 MsG0780041514.01.T01:intron 35.0%
AGATATCAGGAAAACCATGA+AGG - Chr7:91873204-91873223 None:intergenic 35.0%
AGTTCCTCTATGAACATGTT+CGG - Chr7:91875283-91875302 None:intergenic 35.0%
ATGAGATAACAAGCCTTCTT+TGG - Chr7:91874588-91874607 None:intergenic 35.0%
ATTGCATAAACCAAAGAAGG+AGG - Chr7:91873777-91873796 None:intergenic 35.0%
GAACATGTTCGGATTTATGT+TGG - Chr7:91875272-91875291 None:intergenic 35.0%
GAGAGAGAGAAAATTAAGAG+TGG - Chr7:91874115-91874134 None:intergenic 35.0%
GATTGTTCAGACTTCAAACT+TGG + Chr7:91875088-91875107 MsG0780041514.01.T01:intron 35.0%
TATAAATGGCACTTGAACCA+TGG - Chr7:91874791-91874810 None:intergenic 35.0%
TCTTACTAACAACTGTTCTG+AGG - Chr7:91873993-91874012 None:intergenic 35.0%
TGAGATAACAAGCCTTCTTT+GGG - Chr7:91874587-91874606 None:intergenic 35.0%
TGGAAGTGAGTTACAATCTA+TGG + Chr7:91874057-91874076 MsG0780041514.01.T01:intron 35.0%
TTCGGATTTATGTTGGGATT+TGG - Chr7:91875265-91875284 None:intergenic 35.0%
TTTGGAGGAAGTGATTATAC+AGG + Chr7:91875529-91875548 MsG0780041514.01.T01:CDS 35.0%
! GGCTTTGTATTTGAAACATC+GGG - Chr7:91874611-91874630 None:intergenic 35.0%
! GGGCTTTGTATTTGAAACAT+CGG - Chr7:91874612-91874631 None:intergenic 35.0%
! TACACGATTTTGCATTTGGT+TGG + Chr7:91873334-91873353 MsG0780041514.01.T01:CDS 35.0%
! TACACTTTTACCTCCTTCTT+TGG + Chr7:91873764-91873783 MsG0780041514.01.T01:intron 35.0%
! TAGCTACACGATTTTGCATT+TGG + Chr7:91873330-91873349 MsG0780041514.01.T01:CDS 35.0%
! TATTGTTGTTACTCATGCTG+AGG + Chr7:91874184-91874203 MsG0780041514.01.T01:intron 35.0%
! TTCATGGTTTTCCTGATATC+TGG + Chr7:91873203-91873222 MsG0780041514.01.T01:CDS 35.0%
!! AGTCAGGTTGGATTAAGTTT+GGG - Chr7:91875160-91875179 None:intergenic 35.0%
!! TAGTCAGGTTGGATTAAGTT+TGG - Chr7:91875161-91875180 None:intergenic 35.0%
AAAATGCATGTCGCAGAGAA+AGG + Chr7:91873154-91873173 MsG0780041514.01.T01:CDS 40.0%
AATTCATGTGACAGGAACCA+GGG + Chr7:91874474-91874493 MsG0780041514.01.T01:intron 40.0%
ACATAAGCCTTGACTTTCTC+AGG - Chr7:91873460-91873479 None:intergenic 40.0%
AGTGATTATACAGGAAGGTG+TGG + Chr7:91875538-91875557 MsG0780041514.01.T01:CDS 40.0%
ATAACAAGCCTTCTTTGGGT+AGG - Chr7:91874583-91874602 None:intergenic 40.0%
CATCAACAGGTTTCACTTTG+GGG - Chr7:91873513-91873532 None:intergenic 40.0%
CATGAGCCACAAGGAAAATT+TGG - Chr7:91873396-91873415 None:intergenic 40.0%
CCACATCAAAATAGTCAGGT+TGG - Chr7:91875172-91875191 None:intergenic 40.0%
CCATCAACAGGTTTCACTTT+GGG - Chr7:91873514-91873533 None:intergenic 40.0%
CCATGAAGGAACAAAACAAC+AGG - Chr7:91873190-91873209 None:intergenic 40.0%
CCATTAATCCTACCCAAAGA+AGG + Chr7:91874572-91874591 MsG0780041514.01.T01:CDS 40.0%
CCTTCTTTGGGTAGGATTAA+TGG - Chr7:91874575-91874594 None:intergenic 40.0%
CTTCACTGGAACTTTAACCT+TGG - Chr7:91875420-91875439 None:intergenic 40.0%
GAAAGATGTGCCAAATTTGG+AGG + Chr7:91875514-91875533 MsG0780041514.01.T01:CDS 40.0%
GAGGAAGTGATTATACAGGA+AGG + Chr7:91875533-91875552 MsG0780041514.01.T01:CDS 40.0%
GTGTAGCTACTAACTGAAGT+GGG - Chr7:91873319-91873338 None:intergenic 40.0%
TGCTGAGGTAACACTAATCA+AGG + Chr7:91874199-91874218 MsG0780041514.01.T01:intron 40.0%
TTCCTGATATCTGGTACTCT+TGG + Chr7:91873212-91873231 MsG0780041514.01.T01:CDS 40.0%
TTTCCTTGTGGCTCATGATT+GGG + Chr7:91873399-91873418 MsG0780041514.01.T01:CDS 40.0%
! ATAGCCTTGATCACAAGTTC+TGG - Chr7:91874530-91874549 None:intergenic 40.0%
! GTTGCTCTAATTGACTCACT+TGG + Chr7:91873364-91873383 MsG0780041514.01.T01:CDS 40.0%
! TAGCCTTGATCACAAGTTCT+GGG - Chr7:91874529-91874548 None:intergenic 40.0%
! TCTAATTGACTCACTTGGTG+TGG + Chr7:91873369-91873388 MsG0780041514.01.T01:CDS 40.0%
! TGTGGACCAAATTTTCCTTG+TGG + Chr7:91873387-91873406 MsG0780041514.01.T01:CDS 40.0%
! TTGGGGTTTCTTGGTAACAA+CGG - Chr7:91873496-91873515 None:intergenic 40.0%
! TTTTCCTTGTGGCTCATGAT+TGG + Chr7:91873398-91873417 MsG0780041514.01.T01:CDS 40.0%
!!! CCAACCTGACTATTTTGATG+TGG + Chr7:91875169-91875188 MsG0780041514.01.T01:intron 40.0%
!!! CCTGTTGTTTTGTTCCTTCA+TGG + Chr7:91873187-91873206 MsG0780041514.01.T01:CDS 40.0%
AAAGCTTGCATGCCATCAAC+AGG - Chr7:91873526-91873545 None:intergenic 45.0%
AACTAGTTGTCCCTTGTCCA+TGG + Chr7:91874771-91874790 MsG0780041514.01.T01:intron 45.0%
AAGCAATACATCGAGAGTGG+TGG + Chr7:91875485-91875504 MsG0780041514.01.T01:CDS 45.0%
ACAGAGATGCCAACCAATGA+TGG - Chr7:91873428-91873447 None:intergenic 45.0%
ATGCTTACAGGTCGGAATTC+TGG + Chr7:91874548-91874567 MsG0780041514.01.T01:CDS 45.0%
CAATTCATGTGACAGGAACC+AGG + Chr7:91874473-91874492 MsG0780041514.01.T01:intron 45.0%
CACAGAACAGTGGAAGTGAA+TGG + Chr7:91873127-91873146 MsG0780041514.01.T01:CDS 45.0%
CCCAAAGTGAAACCTGTTGA+TGG + Chr7:91873511-91873530 MsG0780041514.01.T01:CDS 45.0%
CGTGTAGCTACTAACTGAAG+TGG - Chr7:91873320-91873339 None:intergenic 45.0%
CTGGTTCCTGTCACATGAAT+TGG - Chr7:91874475-91874494 None:intergenic 45.0%
CTTCTTGTGAGAGCCAAGAA+GGG - Chr7:91874637-91874656 None:intergenic 45.0%
GAAGTTCATCACAGGCGATT+TGG + Chr7:91875436-91875455 MsG0780041514.01.T01:CDS 45.0%
GCCATCAACAGGTTTCACTT+TGG - Chr7:91873515-91873534 None:intergenic 45.0%
GTCGCAGAGAAAGGAAAAGA+AGG + Chr7:91873163-91873182 MsG0780041514.01.T01:CDS 45.0%
GTGATCAAGGCTATGCTTAC+AGG + Chr7:91874536-91874555 MsG0780041514.01.T01:CDS 45.0%
GTTCCAGTGAAGTTCATCAC+AGG + Chr7:91875428-91875447 MsG0780041514.01.T01:CDS 45.0%
GTTTCGTCCTGAGAAAGTCA+AGG + Chr7:91873450-91873469 MsG0780041514.01.T01:CDS 45.0%
TAACAACCAAGAAGCTGCTG+AGG + Chr7:91875568-91875587 MsG0780041514.01.T01:CDS 45.0%
TAACTTCCTCAGCAGCTTCT+TGG - Chr7:91875577-91875596 None:intergenic 45.0%
TAGCCCAGAACTTGTGATCA+AGG + Chr7:91874523-91874542 MsG0780041514.01.T01:CDS 45.0%
TCAAGGCTATGCTTACAGGT+CGG + Chr7:91874540-91874559 MsG0780041514.01.T01:CDS 45.0%
TCTTCTTGTGAGAGCCAAGA+AGG - Chr7:91874638-91874657 None:intergenic 45.0%
TGCTTACAGGTCGGAATTCT+GGG + Chr7:91874549-91874568 MsG0780041514.01.T01:CDS 45.0%
TGGAACTTTAACCTTGGCTC+CGG - Chr7:91875414-91875433 None:intergenic 45.0%
TTCCTTGTGGCTCATGATTG+GGG + Chr7:91873400-91873419 MsG0780041514.01.T01:CDS 45.0%
TTTGAAAAGTCGGGGTTCAG+TGG + Chr7:91874680-91874699 MsG0780041514.01.T01:CDS 45.0%
! ACTAACTGAAGTGGGAGCAT+CGG - Chr7:91873311-91873330 None:intergenic 45.0%
! CAGGTTGGATTAAGTTTGGG+TGG - Chr7:91875157-91875176 None:intergenic 45.0%
! TTGGTAACAACGGAACACTG+AGG - Chr7:91873486-91873505 None:intergenic 45.0%
!! GATGGCATGCAAGCTTTGTT+TGG + Chr7:91873529-91873548 MsG0780041514.01.T01:CDS 45.0%
!! GGATATGAAGGGGGTATTTG+AGG + Chr7:91874303-91874322 MsG0780041514.01.T01:intron 45.0%
!! GGTTTCACTTTGGGGTTTCT+TGG - Chr7:91873505-91873524 None:intergenic 45.0%
!!! AAATTGTTTTTTTTTTAATA+TGG - Chr7:91874017-91874036 None:intergenic 5.0%
!!! AATTGTTTTTTTTTTAATAT+GGG - Chr7:91874016-91874035 None:intergenic 5.0%
AATTCGGCTTCTGCTTTCCC+TGG - Chr7:91874494-91874513 None:intergenic 50.0%
AGCAGAAGCCGAATTTGCCA+AGG + Chr7:91874499-91874518 MsG0780041514.01.T01:CDS 50.0%
AGGAGTAGAGCACAGAACAG+TGG + Chr7:91873117-91873136 MsG0780041514.01.T01:CDS 50.0%
ATACAAAGCCCCTCCCTTCT+TGG + Chr7:91874621-91874640 MsG0780041514.01.T01:CDS 50.0%
GCAGAAGCCGAATTTGCCAA+GGG + Chr7:91874500-91874519 MsG0780041514.01.T01:CDS 50.0%
GCGAAGCAATACATCGAGAG+TGG + Chr7:91875482-91875501 MsG0780041514.01.T01:CDS 50.0%
GGCACTTGAACCATGGACAA+GGG - Chr7:91874784-91874803 None:intergenic 50.0%
TCGCCTGTGATGAACTTCAC+TGG - Chr7:91875434-91875453 None:intergenic 50.0%
TGGCACTTGAACCATGGACA+AGG - Chr7:91874785-91874804 None:intergenic 50.0%
TGGGCTACCCTTGGCAAATT+CGG - Chr7:91874510-91874529 None:intergenic 50.0%
TTGTGAGAGCCAAGAAGGGA+GGG - Chr7:91874633-91874652 None:intergenic 50.0%
! ATTGGGGTGCCATCATTGGT+TGG + Chr7:91873416-91873435 MsG0780041514.01.T01:CDS 50.0%
! CATGATTGGGGTGCCATCAT+TGG + Chr7:91873412-91873431 MsG0780041514.01.T01:CDS 50.0%
! GAAGATCTGGAGCAACAGCA+CGG - Chr7:91873273-91873292 None:intergenic 50.0%
!! CGCCAAGAGTACCAGATATC+AGG - Chr7:91873217-91873236 None:intergenic 50.0%
ATTGGGAGCTCACAGCAGCA+TGG + Chr7:91875387-91875406 MsG0780041514.01.T01:CDS 55.0%
CACCCCAATCATGAGCCACA+AGG - Chr7:91873405-91873424 None:intergenic 55.0%
CTTGTGAGAGCCAAGAAGGG+AGG - Chr7:91874634-91874653 None:intergenic 55.0%
GAAAAGTCGGGGTTCAGTGG+TGG + Chr7:91874683-91874702 MsG0780041514.01.T01:CDS 55.0%
GCTCCAGATCTTCGTGGCTA+CGG + Chr7:91873280-91873299 MsG0780041514.01.T01:CDS 55.0%
GCTGTTGCTCCAGATCTTCG+TGG + Chr7:91873274-91873293 MsG0780041514.01.T01:CDS 55.0%
TCACCGTAGCCACGAAGATC+TGG - Chr7:91873286-91873305 None:intergenic 55.0%
TGTGAGAGCCAAGAAGGGAG+GGG - Chr7:91874632-91874651 None:intergenic 55.0%
!! CACAAGTTCTGGGCTACCCT+TGG - Chr7:91874519-91874538 None:intergenic 55.0%
ATTGCGGCTCTCGGCTCTCT+CGG + Chr7:91873244-91873263 MsG0780041514.01.T01:CDS 60.0%
CTCTTGGCGCCACCAGATTG+CGG + Chr7:91873228-91873247 MsG0780041514.01.T01:CDS 60.0%
GAGCTCACAGCAGCATGGAC+CGG + Chr7:91875392-91875411 MsG0780041514.01.T01:CDS 60.0%
AGCAGCATGGACCGGAGCCA+AGG + Chr7:91875400-91875419 MsG0780041514.01.T01:CDS 65.0%
AGCCGAGAGCCGCAATCTGG+TGG - Chr7:91873240-91873259 None:intergenic 65.0%
CGCCACCAGATTGCGGCTCT+CGG + Chr7:91873235-91873254 MsG0780041514.01.T01:CDS 65.0%
GAGAGCCGAGAGCCGCAATC+TGG - Chr7:91873243-91873262 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 91873112 91875631 91873112 ID=MsG0780041514.01;Name=MsG0780041514.01
Chr7 mRNA 91873112 91875631 91873112 ID=MsG0780041514.01.T01;Parent=MsG0780041514.01;Name=MsG0780041514.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|0.66|3|0|319
Chr7 exon 91873112 91873579 91873112 ID=MsG0780041514.01.T01:exon:18732;Parent=MsG0780041514.01.T01
Chr7 exon 91874488 91874732 91874488 ID=MsG0780041514.01.T01:exon:18733;Parent=MsG0780041514.01.T01
Chr7 exon 91875385 91875631 91875385 ID=MsG0780041514.01.T01:exon:18734;Parent=MsG0780041514.01.T01
Chr7 CDS 91873112 91873579 91873112 ID=MsG0780041514.01.T01:cds;Parent=MsG0780041514.01.T01
Chr7 CDS 91874488 91874732 91874488 ID=MsG0780041514.01.T01:cds;Parent=MsG0780041514.01.T01
Chr7 CDS 91875385 91875631 91875385 ID=MsG0780041514.01.T01:cds;Parent=MsG0780041514.01.T01
Gene Sequence

>MsG0780041514.01.T01

ATGGAAGGAGTAGAGCACAGAACAGTGGAAGTGAATGGCATCAAAATGCATGTCGCAGAGAAAGGAAAAGAAGGACCTGTTGTTTTGTTCCTTCATGGTTTTCCTGATATCTGGTACTCTTGGCGCCACCAGATTGCGGCTCTCGGCTCTCTCGGATACCGTGCTGTTGCTCCAGATCTTCGTGGCTACGGTGACACCGATGCTCCCACTTCAGTTAGTAGCTACACGATTTTGCATTTGGTTGGTGACATCGTTGCTCTAATTGACTCACTTGGTGTGGACCAAATTTTCCTTGTGGCTCATGATTGGGGTGCCATCATTGGTTGGCATCTCTGTTTGTTTCGTCCTGAGAAAGTCAAGGCTTATGTTTGCCTCAGTGTTCCGTTGTTACCAAGAAACCCCAAAGTGAAACCTGTTGATGGCATGCAAGCTTTGTTTGGTGACGATTATTATATCTGCAGATTCCAGGAACCAGGGAAAGCAGAAGCCGAATTTGCCAAGGGTAGCCCAGAACTTGTGATCAAGGCTATGCTTACAGGTCGGAATTCTGGGCCATTAATCCTACCCAAAGAAGGCTTGTTATCTCATCCCGATGTTTCAAATACAAAGCCCCTCCCTTCTTGGCTCTCACAAGAAGATGTCGCTTACTATGCTTCTAAATTTGAAAAGTCGGGGTTCAGTGGTGGCCTTAACTACTATAGAAATCTCAACTTGAATTGGGAGCTCACAGCAGCATGGACCGGAGCCAAGGTTAAAGTTCCAGTGAAGTTCATCACAGGCGATTTGGATATAGTTTATGCTTCTTTTGGTGCGAAGCAATACATCGAGAGTGGTGGCTTTAAGAAAGATGTGCCAAATTTGGAGGAAGTGATTATACAGGAAGGTGTGGCTCACTATAACAACCAAGAAGCTGCTGAGGAAGTTAGTAATCACATTTATGATTTTATCAAGAAGTATTGA
Protein sequence

>MsG0780041514.01.T01

MEGVEHRTVEVNGIKMHVAEKGKEGPVVLFLHGFPDIWYSWRHQIAALGSLGYRAVAPDLRGYGDTDAPTSVSSYTILHLVGDIVALIDSLGVDQIFLVAHDWGAIIGWHLCLFRPEKVKAYVCLSVPLLPRNPKVKPVDGMQALFGDDYYICRFQEPGKAEAEFAKGSPELVIKAMLTGRNSGPLILPKEGLLSHPDVSNTKPLPSWLSQEDVAYYASKFEKSGFSGGLNYYRNLNLNWELTAAWTGAKVKVPVKFITGDLDIVYASFGAKQYIESGGFKKDVPNLEEVIIQEGVAHYNNQEAAEEVSNHIYDFIKKY*