Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041607.01.T01 | XP_024625624.1 | 96.865 | 319 | 10 | 0 | 1 | 319 | 1 | 319 | 0 | 644 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041607.01.T01 | I6YGS0 | 35.276 | 326 | 191 | 7 | 1 | 316 | 1 | 316 | 4.06E-61 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041607.01.T01 | A0A072U5U0 | 96.865 | 319 | 10 | 0 | 1 | 319 | 1 | 319 | 0.0 | 644 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0880047066.01 | MsG0780041607.01 | PPI |
| MsG0780041313.01 | MsG0780041607.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041607.01.T01 | MTR_7g112615 | 96.865 | 319 | 10 | 0 | 1 | 319 | 1 | 319 | 0.0 | 644 |
| MsG0780041607.01.T01 | MTR_7g113050 | 93.730 | 319 | 20 | 0 | 1 | 319 | 1 | 319 | 0.0 | 628 |
| MsG0780041607.01.T01 | MTR_7g113030 | 91.223 | 319 | 28 | 0 | 1 | 319 | 1 | 319 | 0.0 | 615 |
| MsG0780041607.01.T01 | MTR_7g113020 | 88.715 | 319 | 36 | 0 | 1 | 319 | 1 | 319 | 0.0 | 603 |
| MsG0780041607.01.T01 | MTR_7g112620 | 88.715 | 319 | 36 | 0 | 1 | 319 | 1 | 319 | 0.0 | 596 |
| MsG0780041607.01.T01 | MTR_7g112960 | 76.489 | 319 | 75 | 0 | 1 | 319 | 1 | 319 | 0.0 | 519 |
| MsG0780041607.01.T01 | MTR_7g112963 | 77.116 | 319 | 73 | 0 | 1 | 319 | 1 | 319 | 0.0 | 514 |
| MsG0780041607.01.T01 | MTR_7g112970 | 75.862 | 319 | 74 | 2 | 1 | 319 | 1 | 316 | 0.0 | 514 |
| MsG0780041607.01.T01 | MTR_4g005160 | 73.684 | 323 | 80 | 3 | 1 | 319 | 1 | 322 | 0.0 | 509 |
| MsG0780041607.01.T01 | MTR_7g112615 | 95.798 | 238 | 10 | 0 | 1 | 238 | 1 | 238 | 3.26e-173 | 479 |
| MsG0780041607.01.T01 | MTR_7g113050 | 93.697 | 238 | 15 | 0 | 1 | 238 | 1 | 238 | 4.09e-170 | 472 |
| MsG0780041607.01.T01 | MTR_7g113010 | 72.792 | 283 | 73 | 2 | 1 | 281 | 1 | 281 | 4.58e-152 | 439 |
| MsG0780041607.01.T01 | MTR_4g120240 | 62.305 | 321 | 117 | 3 | 1 | 319 | 37 | 355 | 2.05e-148 | 421 |
| MsG0780041607.01.T01 | MTR_7g108825 | 62.069 | 319 | 119 | 2 | 1 | 319 | 1 | 317 | 8.77e-145 | 410 |
| MsG0780041607.01.T01 | MTR_7g112615 | 96.226 | 159 | 6 | 0 | 1 | 159 | 1 | 159 | 1.03e-111 | 322 |
| MsG0780041607.01.T01 | MTR_8g076680 | 47.649 | 319 | 163 | 3 | 1 | 319 | 3 | 317 | 2.48e-105 | 311 |
| MsG0780041607.01.T01 | MTR_7g108825 | 59.664 | 238 | 94 | 2 | 1 | 238 | 1 | 236 | 2.19e-99 | 292 |
| MsG0780041607.01.T01 | MTR_7g112910 | 60.241 | 249 | 44 | 5 | 72 | 319 | 1 | 195 | 9.74e-93 | 274 |
| MsG0780041607.01.T01 | MTR_1g083480 | 77.358 | 159 | 32 | 2 | 1 | 156 | 1 | 158 | 1.47e-87 | 260 |
| MsG0780041607.01.T01 | MTR_8g076680 | 48.319 | 238 | 121 | 2 | 1 | 238 | 3 | 238 | 1.70e-79 | 242 |
| MsG0780041607.01.T01 | MTR_2g090240 | 37.695 | 321 | 186 | 7 | 1 | 318 | 1 | 310 | 2.73e-68 | 216 |
| MsG0780041607.01.T01 | MTR_4g089060 | 37.072 | 321 | 187 | 6 | 1 | 318 | 1 | 309 | 1.01e-65 | 209 |
| MsG0780041607.01.T01 | MTR_2g090245 | 36.137 | 321 | 191 | 7 | 1 | 318 | 1 | 310 | 2.97e-65 | 208 |
| MsG0780041607.01.T01 | MTR_3g024250 | 85.047 | 107 | 16 | 0 | 46 | 152 | 1 | 107 | 2.44e-63 | 197 |
| MsG0780041607.01.T01 | MTR_4g089040 | 36.137 | 321 | 190 | 6 | 1 | 318 | 1 | 309 | 1.41e-62 | 201 |
| MsG0780041607.01.T01 | MTR_4g089060 | 34.483 | 348 | 186 | 7 | 1 | 318 | 1 | 336 | 1.05e-60 | 197 |
| MsG0780041607.01.T01 | MTR_4g089060 | 39.485 | 233 | 132 | 3 | 1 | 231 | 1 | 226 | 1.30e-53 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041607.01.T01 | AT3G05600 | 61.420 | 324 | 120 | 4 | 1 | 319 | 1 | 324 | 4.84e-152 | 430 |
| MsG0780041607.01.T01 | AT4G02340 | 59.502 | 321 | 123 | 4 | 1 | 319 | 1 | 316 | 3.04e-142 | 404 |
| MsG0780041607.01.T01 | AT2G26740 | 61.801 | 322 | 116 | 4 | 4 | 319 | 1 | 321 | 8.43e-131 | 375 |
| MsG0780041607.01.T01 | AT4G15960 | 53.538 | 325 | 144 | 3 | 1 | 319 | 51 | 374 | 4.86e-127 | 368 |
| MsG0780041607.01.T01 | AT2G26750 | 58.879 | 321 | 126 | 4 | 4 | 319 | 1 | 320 | 1.76e-124 | 359 |
| MsG0780041607.01.T01 | AT3G05600 | 62.140 | 243 | 87 | 4 | 1 | 238 | 1 | 243 | 3.54e-111 | 323 |
| MsG0780041607.01.T01 | AT4G15955 | 50.920 | 326 | 122 | 4 | 5 | 319 | 6 | 304 | 1.38e-110 | 323 |
| MsG0780041607.01.T01 | AT3G51000 | 46.483 | 327 | 154 | 6 | 3 | 319 | 4 | 319 | 9.86e-103 | 304 |
| MsG0780041607.01.T01 | AT4G15955 | 59.770 | 174 | 60 | 2 | 5 | 168 | 6 | 179 | 6.47e-71 | 218 |
| MsG0780041607.01.T01 | AT4G15955 | 60.606 | 165 | 55 | 2 | 5 | 159 | 6 | 170 | 2.74e-67 | 209 |
Find 91 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7:-92975988 | None:intergenic |
| CCCCTGACAAATTGCCTTCT+TGG | 0.160016 | 7:+92976569 | MsG0780041607.01.T01:CDS |
| TTATTATATCTCTAGATTTC+AGG | 0.211379 | 7:+92976089 | MsG0780041607.01.T01:CDS |
| CTCTCAGCTCCCTTGGTTAC+CGG | 0.222064 | 7:+92975782 | MsG0780041607.01.T01:CDS |
| CAAGGAAGATGTGCCGAATT+TGG | 0.238850 | 7:+92977192 | MsG0780041607.01.T01:CDS |
| TTAGGGTTTCTACGCGTAAA+TGG | 0.282040 | 7:-92976024 | None:intergenic |
| CATGATTGGGGTGCCATAAT+TGG | 0.299980 | 7:+92975943 | MsG0780041607.01.T01:CDS |
| GCAAAGATACCAACCAATTA+TGG | 0.300239 | 7:-92975956 | None:intergenic |
| GGCAATTTGTCAGGGGTGTC+CGG | 0.311825 | 7:-92976562 | None:intergenic |
| CGCCATGAATACCAGAGTTC+GGG | 0.321570 | 7:-92975745 | None:intergenic |
| TACTCTCCCTTTGGAAGTAT+TGG | 0.334854 | 7:-92976523 | None:intergenic |
| TTTGAGAAAACGGGCTTTGT+TGG | 0.335209 | 7:+92976628 | MsG0780041607.01.T01:CDS |
| ATACTTCCAAAGGGAGAGTA+TGG | 0.337259 | 7:+92976526 | MsG0780041607.01.T01:CDS |
| CCTAAAATCAGAACTGTTGA+TGG | 0.347446 | 7:+92976042 | MsG0780041607.01.T01:CDS |
| GCTCCAGATCTTCGTGGTTA+TGG | 0.348958 | 7:+92975811 | MsG0780041607.01.T01:CDS |
| ATCACAGGAACCGGGCAAAA+TGG | 0.360568 | 7:+92976429 | MsG0780041607.01.T01:intron |
| TGTTTCTTGTAGCTCATGAT+TGG | 0.362025 | 7:+92975929 | MsG0780041607.01.T01:CDS |
| GATGGCATGCGTGCTGCTTA+TGG | 0.363820 | 7:+92976060 | MsG0780041607.01.T01:CDS |
| GAAGAAGTGATTGTCCAAAA+AGG | 0.365676 | 7:+92977214 | MsG0780041607.01.T01:CDS |
| GTTTCCAAATTTGAGAAAAC+GGG | 0.368898 | 7:+92976619 | MsG0780041607.01.T01:CDS |
| ACAATCACTTCTTCCAAATT+CGG | 0.378669 | 7:-92977205 | None:intergenic |
| TGTTTCCAAATTTGAGAAAA+CGG | 0.384535 | 7:+92976618 | MsG0780041607.01.T01:CDS |
| GTTTCTTGTAGCTCATGATT+GGG | 0.395980 | 7:+92975930 | MsG0780041607.01.T01:CDS |
| TCCCCGAACTCTGGTATTCA+TGG | 0.400658 | 7:+92975743 | MsG0780041607.01.T01:CDS |
| AGCCAAGAAGGCAATTTGTC+AGG | 0.405805 | 7:-92976571 | None:intergenic |
| TGGATATACTCCTTCACCTT+TGG | 0.407549 | 7:-92977157 | None:intergenic |
| TTACTTGTATTGCAGAAATT+GGG | 0.423076 | 7:+92977051 | MsG0780041607.01.T01:intron |
| GAAGTATTGGAGGACCAGTT+TGG | 0.425771 | 7:-92976510 | None:intergenic |
| ATCCTCACAACTCGCCAAAC+TGG | 0.430315 | 7:+92976496 | MsG0780041607.01.T01:CDS |
| GTGCCTGTGAAATTCATTAC+AGG | 0.432209 | 7:+92977109 | MsG0780041607.01.T01:CDS |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7:-92975987 | None:intergenic |
| CCAGTCCCATACTCTCCCTT+TGG | 0.435883 | 7:-92976532 | None:intergenic |
| ATTGTTGCTCTCAGCTCCCT+TGG | 0.441960 | 7:+92975775 | MsG0780041607.01.T01:CDS |
| GCGCCATGAATACCAGAGTT+CGG | 0.442920 | 7:-92975746 | None:intergenic |
| TCACCATAACCACGAAGATC+TGG | 0.446912 | 7:-92975814 | None:intergenic |
| TCTCAGCTCCCTTGGTTACC+GGG | 0.447833 | 7:+92975783 | MsG0780041607.01.T01:CDS |
| GCAAATCTATAAGTGCAATA+AGG | 0.449546 | 7:-92975891 | None:intergenic |
| CCGTGAAGGAACAAAACAAC+TGG | 0.460486 | 7:-92975718 | None:intergenic |
| ATTGCACTTATAGATTTGCT+TGG | 0.470520 | 7:+92975895 | MsG0780041607.01.T01:CDS |
| GAAGATCTGGAGCGACCGCC+CGG | 0.473356 | 7:-92975801 | None:intergenic |
| TATCCATGGTGGAGGGTTCA+AGG | 0.477350 | 7:+92977174 | MsG0780041607.01.T01:CDS |
| GGGAGCTGAGAGCAACAATC+TGG | 0.483314 | 7:-92975771 | None:intergenic |
| AAAATGCATATTGCTGAGAA+AGG | 0.485302 | 7:+92975685 | MsG0780041607.01.T01:CDS |
| GCAATTTGTCAGGGGTGTCC+GGG | 0.485903 | 7:-92976561 | None:intergenic |
| TCTCCCTTTGGAAGTATTGG+AGG | 0.487060 | 7:-92976520 | None:intergenic |
| TTCACGGCTTCCCCGAACTC+TGG | 0.493835 | 7:+92975734 | MsG0780041607.01.T01:CDS |
| TCATCTTCTGTGAGCCAAGA+AGG | 0.501938 | 7:-92976583 | None:intergenic |
| GAGAAAACGGGCTTTGTTGG+AGG | 0.506662 | 7:+92976631 | MsG0780041607.01.T01:CDS |
| CACAGAACAGTGGAAGTGAA+TGG | 0.515742 | 7:+92975658 | MsG0780041607.01.T01:CDS |
| GTGTAGCTGCTTATTGAAGA+TGG | 0.516512 | 7:-92975847 | None:intergenic |
| GAAGCTCAGATGGCTGAAGT+TGG | 0.542944 | 7:+92976451 | MsG0780041607.01.T01:CDS |
| GAAATTCATTACAGGTGACT+TGG | 0.543660 | 7:+92977117 | MsG0780041607.01.T01:CDS |
| GCCAAGAAGGCAATTTGTCA+GGG | 0.548767 | 7:-92976570 | None:intergenic |
| AAGGAGTATATCCATGGTGG+AGG | 0.549978 | 7:+92977166 | MsG0780041607.01.T01:CDS |
| GAGCGACCGCCCGGTAACCA+AGG | 0.552403 | 7:-92975792 | None:intergenic |
| ATTGCTGAGAAAGGAAAAGA+AGG | 0.557400 | 7:+92975694 | MsG0780041607.01.T01:CDS |
| GGGCAAAATGGAAGCTCAGA+TGG | 0.560428 | 7:+92976441 | MsG0780041607.01.T01:CDS |
| TGGTCCTCCAATACTTCCAA+AGG | 0.564157 | 7:+92976516 | MsG0780041607.01.T01:CDS |
| CCAAAGGGAGAGTATGGGAC+TGG | 0.568658 | 7:+92976532 | MsG0780041607.01.T01:CDS |
| GAGCTGATGGCACCATGGAA+TGG | 0.569405 | 7:+92977073 | MsG0780041607.01.T01:CDS |
| TCTTCAATAAGCAGCTACAC+AGG | 0.578976 | 7:+92975850 | MsG0780041607.01.T01:CDS |
| TGGAACACTGAGACAAACAT+AGG | 0.583516 | 7:-92976004 | None:intergenic |
| ATACTCCTTCACCTTTGGTG+AGG | 0.584740 | 7:-92977152 | None:intergenic |
| AGAGTTCGGGGAAGCCGTGA+AGG | 0.588682 | 7:-92975732 | None:intergenic |
| TCACCTGTAATGAATTTCAC+AGG | 0.591992 | 7:-92977112 | None:intergenic |
| GGTCCTCCAATACTTCCAAA+GGG | 0.592627 | 7:+92976517 | MsG0780041607.01.T01:CDS |
| GCGGTCGCTCCAGATCTTCG+TGG | 0.594935 | 7:+92975805 | MsG0780041607.01.T01:CDS |
| ATGGAATGGAGTGAAAATCA+AGG | 0.596236 | 7:+92977087 | MsG0780041607.01.T01:CDS |
| TTTCTTGTAGCTCATGATTG+GGG | 0.597857 | 7:+92975931 | MsG0780041607.01.T01:CDS |
| AGCGACCGCCCGGTAACCAA+GGG | 0.609778 | 7:-92975791 | None:intergenic |
| TTGCAGAAATTGGGAGCTGA+TGG | 0.610067 | 7:+92977060 | MsG0780041607.01.T01:intron |
| CAACAATCAAGAAGCAGCAG+AGG | 0.610084 | 7:+92977249 | MsG0780041607.01.T01:CDS |
| GACCAGTTTGGCGAGTTGTG+AGG | 0.620536 | 7:-92976498 | None:intergenic |
| ATTGGGGTGCCATAATTGGT+TGG | 0.621886 | 7:+92975947 | MsG0780041607.01.T01:CDS |
| TTATCCGTATCACAGGAACC+GGG | 0.623878 | 7:+92976421 | MsG0780041607.01.T01:intron |
| TACTTCCAAAGGGAGAGTAT+GGG | 0.628244 | 7:+92976527 | MsG0780041607.01.T01:CDS |
| AGCTGAGAGCAACAATCTGG+TGG | 0.629150 | 7:-92975768 | None:intergenic |
| AAGGTGAAGGAGTATATCCA+TGG | 0.634923 | 7:+92977160 | MsG0780041607.01.T01:CDS |
| ATACACCTCACCAAAGGTGA+AGG | 0.642917 | 7:+92977147 | MsG0780041607.01.T01:CDS |
| AAACGACAGATAGAGATGGA+AGG | 0.647201 | 7:+92975628 | None:intergenic |
| ATTGGGAGCTGATGGCACCA+TGG | 0.649732 | 7:+92977068 | MsG0780041607.01.T01:CDS |
| CATTGTATACACCTCACCAA+AGG | 0.655794 | 7:+92977141 | MsG0780041607.01.T01:CDS |
| CTTCCTTGAACCCTCCACCA+TGG | 0.658760 | 7:-92977177 | None:intergenic |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7:+92975648 | MsG0780041607.01.T01:CDS |
| CCAAGAAGGCAATTTGTCAG+GGG | 0.681792 | 7:-92976569 | None:intergenic |
| AGGAGTATATCCATGGTGGA+GGG | 0.690032 | 7:+92977167 | MsG0780041607.01.T01:CDS |
| GTGAAGGAGTATATCCATGG+TGG | 0.691244 | 7:+92977163 | MsG0780041607.01.T01:CDS |
| GCCATGAATACCAGAGTTCG+GGG | 0.700987 | 7:-92975744 | None:intergenic |
| GTATGGGACTGGATTCAACC+CGG | 0.705834 | 7:+92976543 | MsG0780041607.01.T01:CDS |
| TCGTGGTTATGGTGACACTG+AGG | 0.732508 | 7:+92975822 | MsG0780041607.01.T01:CDS |
| CAGCTCCCTTGGTTACCGGG+CGG | 0.757325 | 7:+92975786 | MsG0780041607.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTTAAAAAAAAAAAAA+TGG | - | Chr7:92976923-92976942 | None:intergenic | 0.0% |
| !! | GAGTAATATTAAATATGTTA+GGG | + | Chr7:92976337-92976356 | MsG0780041607.01.T01:intron | 15.0% |
| !!! | TATTTTAAGATAATACAGAA+AGG | - | Chr7:92976120-92976139 | None:intergenic | 15.0% |
| !!! | TCTATATTTACATTTCTTTT+CGG | + | Chr7:92976726-92976745 | MsG0780041607.01.T01:intron | 15.0% |
| !!! | TTTTTTGAGTAAATCAAAAT+CGG | + | Chr7:92976240-92976259 | MsG0780041607.01.T01:intron | 15.0% |
| !! | ATGAATTATTGTTCATTCTA+AGG | + | Chr7:92976315-92976334 | MsG0780041607.01.T01:intron | 20.0% |
| !! | CAACTTTAGTATTAACATAT+AGG | - | Chr7:92976163-92976182 | None:intergenic | 20.0% |
| !! | GAAATGTAAATATAGATTTG+TGG | - | Chr7:92976722-92976741 | None:intergenic | 20.0% |
| !! | GGAGTAATATTAAATATGTT+AGG | + | Chr7:92976336-92976355 | MsG0780041607.01.T01:intron | 20.0% |
| !! | TTATTATATCTCTAGATTTC+AGG | + | Chr7:92976089-92976108 | MsG0780041607.01.T01:CDS | 20.0% |
| !!! | CTATATTTACATTTCTTTTC+GGG | + | Chr7:92976727-92976746 | MsG0780041607.01.T01:intron | 20.0% |
| ! | AATCAAAATCGGAACATTTA+TGG | + | Chr7:92976251-92976270 | MsG0780041607.01.T01:intron | 25.0% |
| ! | ATTACTTGTATTGCAGAAAT+TGG | + | Chr7:92977050-92977069 | MsG0780041607.01.T01:intron | 25.0% |
| ! | CTAAATGTAATATGTGATTG+TGG | - | Chr7:92976894-92976913 | None:intergenic | 25.0% |
| ! | TATTTATACCTGCAATATGA+CGG | - | Chr7:92976368-92976387 | None:intergenic | 25.0% |
| ! | TGTCAAATATCAACACATAT+CGG | - | Chr7:92976834-92976853 | None:intergenic | 25.0% |
| ! | TGTTTCCAAATTTGAGAAAA+CGG | + | Chr7:92976618-92976637 | MsG0780041607.01.T01:CDS | 25.0% |
| ! | TTACTTGTATTGCAGAAATT+GGG | + | Chr7:92977051-92977070 | MsG0780041607.01.T01:intron | 25.0% |
| !!! | TGTAATATTTTGATTCTCTG+TGG | + | Chr7:92976680-92976699 | MsG0780041607.01.T01:intron | 25.0% |
| AAAATGCATATTGCTGAGAA+AGG | + | Chr7:92975685-92975704 | MsG0780041607.01.T01:CDS | 30.0% | |
| ACAATCACTTCTTCCAAATT+CGG | - | Chr7:92977208-92977227 | None:intergenic | 30.0% | |
| ATGTCGTCCCAAAAAAAAAA+AGG | - | Chr7:92976866-92976885 | None:intergenic | 30.0% | |
| ATTTATACCTGCAATATGAC+GGG | - | Chr7:92976367-92976386 | None:intergenic | 30.0% | |
| GCAAATCTATAAGTGCAATA+AGG | - | Chr7:92975894-92975913 | None:intergenic | 30.0% | |
| GTTTCCAAATTTGAGAAAAC+GGG | + | Chr7:92976619-92976638 | MsG0780041607.01.T01:CDS | 30.0% | |
| TATCTATGAGTCATACTCAA+TGG | + | Chr7:92976208-92976227 | MsG0780041607.01.T01:intron | 30.0% | |
| TGACTCATAGATATAGTTCA+AGG | - | Chr7:92976201-92976220 | None:intergenic | 30.0% | |
| ! | ATTGCACTTATAGATTTGCT+TGG | + | Chr7:92975895-92975914 | MsG0780041607.01.T01:CDS | 30.0% |
| ! | TCGTGTTTTATATTTGTGTC+AGG | + | Chr7:92976965-92976984 | MsG0780041607.01.T01:intron | 30.0% |
| !! | CATCAACAGTTCTGATTTTA+GGG | - | Chr7:92976044-92976063 | None:intergenic | 30.0% |
| !!! | TTGTTTTTTATCCGTATCAC+AGG | + | Chr7:92976414-92976433 | MsG0780041607.01.T01:intron | 30.0% |
| AGATCACTCTTTATGAACCA+CGG | - | Chr7:92977008-92977027 | None:intergenic | 35.0% | |
| ATGGAATGGAGTGAAAATCA+AGG | + | Chr7:92977087-92977106 | MsG0780041607.01.T01:CDS | 35.0% | |
| ATTCTTGATTGAGTCATGCT+GGG | - | Chr7:92976297-92976316 | None:intergenic | 35.0% | |
| ATTGCTGAGAAAGGAAAAGA+AGG | + | Chr7:92975694-92975713 | MsG0780041607.01.T01:CDS | 35.0% | |
| CCTAAAATCAGAACTGTTGA+TGG | + | Chr7:92976042-92976061 | MsG0780041607.01.T01:CDS | 35.0% | |
| GAAATTCATTACAGGTGACT+TGG | + | Chr7:92977117-92977136 | MsG0780041607.01.T01:CDS | 35.0% | |
| GAAGAAGTGATTGTCCAAAA+AGG | + | Chr7:92977214-92977233 | MsG0780041607.01.T01:CDS | 35.0% | |
| GATTTGTGGAAAACAATCAG+AGG | - | Chr7:92976708-92976727 | None:intergenic | 35.0% | |
| GCAAAGATACCAACCAATTA+TGG | - | Chr7:92975959-92975978 | None:intergenic | 35.0% | |
| GTTTCTTGTAGCTCATGATT+GGG | + | Chr7:92975930-92975949 | MsG0780041607.01.T01:CDS | 35.0% | |
| TATCAACACATATCGGACAT+TGG | - | Chr7:92976827-92976846 | None:intergenic | 35.0% | |
| TCACCTGTAATGAATTTCAC+AGG | - | Chr7:92977115-92977134 | None:intergenic | 35.0% | |
| TCGTCCCAAAAAAAAAAAGG+CGG | - | Chr7:92976863-92976882 | None:intergenic | 35.0% | |
| TGTTTCTTGTAGCTCATGAT+TGG | + | Chr7:92975929-92975948 | MsG0780041607.01.T01:CDS | 35.0% | |
| TTTCTTGTAGCTCATGATTG+GGG | + | Chr7:92975931-92975950 | MsG0780041607.01.T01:CDS | 35.0% | |
| ! | AAAGCCCGTTTTCTCAAATT+TGG | - | Chr7:92976626-92976645 | None:intergenic | 35.0% |
| ! | ACATAGGCTTTGATTCTTTC+AGG | - | Chr7:92975991-92976010 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | - | Chr7:92975990-92976009 | None:intergenic | 35.0% |
| ! | TACACAGGTTTTCACATTGT+AGG | + | Chr7:92975865-92975884 | MsG0780041607.01.T01:CDS | 35.0% |
| ! | TTGATTTTCACTCCATTCCA+TGG | - | Chr7:92977088-92977107 | None:intergenic | 35.0% |
| !! | CCATCAACAGTTCTGATTTT+AGG | - | Chr7:92976045-92976064 | None:intergenic | 35.0% |
| !!! | GACACCGCCTTTTTTTTTTT+GGG | + | Chr7:92976856-92976875 | MsG0780041607.01.T01:intron | 35.0% |
| !!! | TGACACCGCCTTTTTTTTTT+TGG | + | Chr7:92976855-92976874 | MsG0780041607.01.T01:intron | 35.0% |
| AGGAATAGAACACAGAACAG+TGG | + | Chr7:92975648-92975667 | MsG0780041607.01.T01:CDS | 40.0% | |
| AGTGATTGTCCAAAAAGGAG+TGG | + | Chr7:92977219-92977238 | MsG0780041607.01.T01:CDS | 40.0% | |
| ATACTTCCAAAGGGAGAGTA+TGG | + | Chr7:92976526-92976545 | MsG0780041607.01.T01:CDS | 40.0% | |
| CATTCTTGATTGAGTCATGC+TGG | - | Chr7:92976298-92976317 | None:intergenic | 40.0% | |
| CATTGTATACACCTCACCAA+AGG | + | Chr7:92977141-92977160 | MsG0780041607.01.T01:CDS | 40.0% | |
| GTGCCTGTGAAATTCATTAC+AGG | + | Chr7:92977109-92977128 | MsG0780041607.01.T01:CDS | 40.0% | |
| GTGTAGCTGCTTATTGAAGA+TGG | - | Chr7:92975850-92975869 | None:intergenic | 40.0% | |
| TCTTCAATAAGCAGCTACAC+AGG | + | Chr7:92975850-92975869 | MsG0780041607.01.T01:CDS | 40.0% | |
| TGGAACACTGAGACAAACAT+AGG | - | Chr7:92976007-92976026 | None:intergenic | 40.0% | |
| TGGATATACTCCTTCACCTT+TGG | - | Chr7:92977160-92977179 | None:intergenic | 40.0% | |
| TTAGGGTTTCTACGCGTAAA+TGG | - | Chr7:92976027-92976046 | None:intergenic | 40.0% | |
| TTTATCCGTATCACAGGAAC+CGG | + | Chr7:92976420-92976439 | MsG0780041607.01.T01:intron | 40.0% | |
| TTTATGAACCACGGAGACAT+TGG | - | Chr7:92976999-92977018 | None:intergenic | 40.0% | |
| ! | AAGGTGAAGGAGTATATCCA+TGG | + | Chr7:92977160-92977179 | MsG0780041607.01.T01:CDS | 40.0% |
| ! | TACTCTCCCTTTGGAAGTAT+TGG | - | Chr7:92976526-92976545 | None:intergenic | 40.0% |
| ! | TACTTCCAAAGGGAGAGTAT+GGG | + | Chr7:92976527-92976546 | MsG0780041607.01.T01:CDS | 40.0% |
| ! | TTTGAGAAAACGGGCTTTGT+TGG | + | Chr7:92976628-92976647 | MsG0780041607.01.T01:CDS | 40.0% |
| !! | CCAGTTGTTTTGTTCCTTCA+CGG | + | Chr7:92975718-92975737 | MsG0780041607.01.T01:CDS | 40.0% |
| AGCCAAGAAGGCAATTTGTC+AGG | - | Chr7:92976574-92976593 | None:intergenic | 45.0% | |
| ATACACCTCACCAAAGGTGA+AGG | + | Chr7:92977147-92977166 | MsG0780041607.01.T01:CDS | 45.0% | |
| ATACTCCTTCACCTTTGGTG+AGG | - | Chr7:92977155-92977174 | None:intergenic | 45.0% | |
| CAACAATCAAGAAGCAGCAG+AGG | + | Chr7:92977249-92977268 | MsG0780041607.01.T01:CDS | 45.0% | |
| CAAGGAAGATGTGCCGAATT+TGG | + | Chr7:92977192-92977211 | MsG0780041607.01.T01:CDS | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | + | Chr7:92975658-92975677 | MsG0780041607.01.T01:CDS | 45.0% | |
| CCAAGAAGGCAATTTGTCAG+GGG | - | Chr7:92976572-92976591 | None:intergenic | 45.0% | |
| CCGTGAAGGAACAAAACAAC+TGG | - | Chr7:92975721-92975740 | None:intergenic | 45.0% | |
| GCCAAGAAGGCAATTTGTCA+GGG | - | Chr7:92976573-92976592 | None:intergenic | 45.0% | |
| GGTCCTCCAATACTTCCAAA+GGG | + | Chr7:92976517-92976536 | MsG0780041607.01.T01:CDS | 45.0% | |
| TCACCATAACCACGAAGATC+TGG | - | Chr7:92975817-92975836 | None:intergenic | 45.0% | |
| TCATCTTCTGTGAGCCAAGA+AGG | - | Chr7:92976586-92976605 | None:intergenic | 45.0% | |
| TGGTCCTCCAATACTTCCAA+AGG | + | Chr7:92976516-92976535 | MsG0780041607.01.T01:CDS | 45.0% | |
| TTATCCGTATCACAGGAACC+GGG | + | Chr7:92976421-92976440 | MsG0780041607.01.T01:intron | 45.0% | |
| TTGCAGAAATTGGGAGCTGA+TGG | + | Chr7:92977060-92977079 | MsG0780041607.01.T01:intron | 45.0% | |
| ! | AAGGAGTATATCCATGGTGG+AGG | + | Chr7:92977166-92977185 | MsG0780041607.01.T01:CDS | 45.0% |
| ! | AGGAGTATATCCATGGTGGA+GGG | + | Chr7:92977167-92977186 | MsG0780041607.01.T01:CDS | 45.0% |
| ! | ATCTGAGCTTCCATTTTGCC+CGG | - | Chr7:92976442-92976461 | None:intergenic | 45.0% |
| ! | ATTGGGGTGCCATAATTGGT+TGG | + | Chr7:92975947-92975966 | MsG0780041607.01.T01:CDS | 45.0% |
| ! | CATGATTGGGGTGCCATAAT+TGG | + | Chr7:92975943-92975962 | MsG0780041607.01.T01:CDS | 45.0% |
| ! | GTGAAGGAGTATATCCATGG+TGG | + | Chr7:92977163-92977182 | MsG0780041607.01.T01:CDS | 45.0% |
| ! | TGAAGTGAGCCACTCCTTTT+TGG | - | Chr7:92977231-92977250 | None:intergenic | 45.0% |
| !! | GAAGTATTGGAGGACCAGTT+TGG | - | Chr7:92976513-92976532 | None:intergenic | 45.0% |
| !! | TCTCCCTTTGGAAGTATTGG+AGG | - | Chr7:92976523-92976542 | None:intergenic | 45.0% |
| AGCTGAGAGCAACAATCTGG+TGG | - | Chr7:92975771-92975790 | None:intergenic | 50.0% | |
| ATCACAGGAACCGGGCAAAA+TGG | + | Chr7:92976429-92976448 | MsG0780041607.01.T01:intron | 50.0% | |
| ATCCTCACAACTCGCCAAAC+TGG | + | Chr7:92976496-92976515 | MsG0780041607.01.T01:CDS | 50.0% | |
| ATTGTTGCTCTCAGCTCCCT+TGG | + | Chr7:92975775-92975794 | MsG0780041607.01.T01:CDS | 50.0% | |
| CCCCTGACAAATTGCCTTCT+TGG | + | Chr7:92976569-92976588 | MsG0780041607.01.T01:CDS | 50.0% | |
| CGCCATGAATACCAGAGTTC+GGG | - | Chr7:92975748-92975767 | None:intergenic | 50.0% | |
| GAAGCTCAGATGGCTGAAGT+TGG | + | Chr7:92976451-92976470 | MsG0780041607.01.T01:CDS | 50.0% | |
| GCCATGAATACCAGAGTTCG+GGG | - | Chr7:92975747-92975766 | None:intergenic | 50.0% | |
| GCGCCATGAATACCAGAGTT+CGG | - | Chr7:92975749-92975768 | None:intergenic | 50.0% | |
| GCTCCAGATCTTCGTGGTTA+TGG | + | Chr7:92975811-92975830 | MsG0780041607.01.T01:CDS | 50.0% | |
| GGGCAAAATGGAAGCTCAGA+TGG | + | Chr7:92976441-92976460 | MsG0780041607.01.T01:CDS | 50.0% | |
| GTATGGGACTGGATTCAACC+CGG | + | Chr7:92976543-92976562 | MsG0780041607.01.T01:CDS | 50.0% | |
| TCCCCGAACTCTGGTATTCA+TGG | + | Chr7:92975743-92975762 | MsG0780041607.01.T01:CDS | 50.0% | |
| TCGTGGTTATGGTGACACTG+AGG | + | Chr7:92975822-92975841 | MsG0780041607.01.T01:CDS | 50.0% | |
| TGTTGTGTCCAATGTCTCCG+TGG | + | Chr7:92976988-92977007 | MsG0780041607.01.T01:intron | 50.0% | |
| TTTGCCCGGTTCCTGTGATA+CGG | - | Chr7:92976428-92976447 | None:intergenic | 50.0% | |
| ! | TATCCATGGTGGAGGGTTCA+AGG | + | Chr7:92977174-92977193 | MsG0780041607.01.T01:CDS | 50.0% |
| !! | GAGAAAACGGGCTTTGTTGG+AGG | + | Chr7:92976631-92976650 | MsG0780041607.01.T01:CDS | 50.0% |
| ATTGGGAGCTGATGGCACCA+TGG | + | Chr7:92977068-92977087 | MsG0780041607.01.T01:CDS | 55.0% | |
| CCAGTCCCATACTCTCCCTT+TGG | - | Chr7:92976535-92976554 | None:intergenic | 55.0% | |
| CTCTCAGCTCCCTTGGTTAC+CGG | + | Chr7:92975782-92975801 | MsG0780041607.01.T01:CDS | 55.0% | |
| CTTCCTTGAACCCTCCACCA+TGG | - | Chr7:92977180-92977199 | None:intergenic | 55.0% | |
| GACCAGTTTGGCGAGTTGTG+AGG | - | Chr7:92976501-92976520 | None:intergenic | 55.0% | |
| GAGCTGATGGCACCATGGAA+TGG | + | Chr7:92977073-92977092 | MsG0780041607.01.T01:CDS | 55.0% | |
| GGGAGCTGAGAGCAACAATC+TGG | - | Chr7:92975774-92975793 | None:intergenic | 55.0% | |
| GGGTCTACCCGTCATATTGC+AGG | + | Chr7:92976357-92976376 | MsG0780041607.01.T01:intron | 55.0% | |
| TCTCAGCTCCCTTGGTTACC+GGG | + | Chr7:92975783-92975802 | MsG0780041607.01.T01:CDS | 55.0% | |
| ! | CCAAAGGGAGAGTATGGGAC+TGG | + | Chr7:92976532-92976551 | MsG0780041607.01.T01:CDS | 55.0% |
| !! | GATGGCATGCGTGCTGCTTA+TGG | + | Chr7:92976060-92976079 | MsG0780041607.01.T01:CDS | 55.0% |
| !! | GCAATTTGTCAGGGGTGTCC+GGG | - | Chr7:92976564-92976583 | None:intergenic | 55.0% |
| !! | GGCAATTTGTCAGGGGTGTC+CGG | - | Chr7:92976565-92976584 | None:intergenic | 55.0% |
| AGAGTTCGGGGAAGCCGTGA+AGG | - | Chr7:92975735-92975754 | None:intergenic | 60.0% | |
| TTCACGGCTTCCCCGAACTC+TGG | + | Chr7:92975734-92975753 | MsG0780041607.01.T01:CDS | 60.0% | |
| AGCGACCGCCCGGTAACCAA+GGG | - | Chr7:92975794-92975813 | None:intergenic | 65.0% | |
| CAGCTCCCTTGGTTACCGGG+CGG | + | Chr7:92975786-92975805 | MsG0780041607.01.T01:CDS | 65.0% | |
| GCGGTCGCTCCAGATCTTCG+TGG | + | Chr7:92975805-92975824 | MsG0780041607.01.T01:CDS | 65.0% | |
| ! | GAAGATCTGGAGCGACCGCC+CGG | - | Chr7:92975804-92975823 | None:intergenic | 65.0% |
| GAGCGACCGCCCGGTAACCA+AGG | - | Chr7:92975795-92975814 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 92975643 | 92977312 | 92975643 | ID=MsG0780041607.01;Name=MsG0780041607.01 |
| Chr7 | mRNA | 92975643 | 92977312 | 92975643 | ID=MsG0780041607.01.T01;Parent=MsG0780041607.01;Name=MsG0780041607.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|3|0|319 |
| Chr7 | exon | 92975643 | 92976110 | 92975643 | ID=MsG0780041607.01.T01:exon:40785;Parent=MsG0780041607.01.T01 |
| Chr7 | exon | 92976436 | 92976680 | 92976436 | ID=MsG0780041607.01.T01:exon:40786;Parent=MsG0780041607.01.T01 |
| Chr7 | exon | 92977066 | 92977312 | 92977066 | ID=MsG0780041607.01.T01:exon:40787;Parent=MsG0780041607.01.T01 |
| Chr7 | CDS | 92975643 | 92976110 | 92975643 | ID=MsG0780041607.01.T01:cds;Parent=MsG0780041607.01.T01 |
| Chr7 | CDS | 92976436 | 92976680 | 92976436 | ID=MsG0780041607.01.T01:cds;Parent=MsG0780041607.01.T01 |
| Chr7 | CDS | 92977066 | 92977312 | 92977066 | ID=MsG0780041607.01.T01:cds;Parent=MsG0780041607.01.T01 |
| Gene Sequence |
| Protein sequence |
