AlfalfaGEDB | MsG0780041607.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041607.01

KEGG: -
GO: GO:0003824
PFAM: PF00561

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041607.01.T01	XP_024625624.1	96.865	319	10	0	1	319	1	319	0	644

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041607.01.T01	I6YGS0	35.276	326	191	7	1	316	1	316	4.06E-61	200

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041607.01.T01	A0A072U5U0	96.865	319	10	0	1	319	1	319	0.0	644

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0780041313.01	MsG0780041607.01	PPI
MsG0880047066.01	MsG0780041607.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041607.01.T01	MTR_7g112615	96.865	319	10	0	1	319	1	319	0.0	644
MsG0780041607.01.T01	MTR_7g113050	93.730	319	20	0	1	319	1	319	0.0	628
MsG0780041607.01.T01	MTR_7g113030	91.223	319	28	0	1	319	1	319	0.0	615
MsG0780041607.01.T01	MTR_7g113020	88.715	319	36	0	1	319	1	319	0.0	603
MsG0780041607.01.T01	MTR_7g112620	88.715	319	36	0	1	319	1	319	0.0	596
MsG0780041607.01.T01	MTR_7g112960	76.489	319	75	0	1	319	1	319	0.0	519
MsG0780041607.01.T01	MTR_7g112963	77.116	319	73	0	1	319	1	319	0.0	514
MsG0780041607.01.T01	MTR_7g112970	75.862	319	74	2	1	319	1	316	0.0	514
MsG0780041607.01.T01	MTR_4g005160	73.684	323	80	3	1	319	1	322	0.0	509
MsG0780041607.01.T01	MTR_7g112615	95.798	238	10	0	1	238	1	238	3.26e-173	479

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041607.01.T01	AT3G05600	61.420	324	120	4	1	319	1	324	4.84e-152	430
MsG0780041607.01.T01	AT4G02340	59.502	321	123	4	1	319	1	316	3.04e-142	404
MsG0780041607.01.T01	AT2G26740	61.801	322	116	4	4	319	1	321	8.43e-131	375
MsG0780041607.01.T01	AT4G15960	53.538	325	144	3	1	319	51	374	4.86e-127	368
MsG0780041607.01.T01	AT2G26750	58.879	321	126	4	4	319	1	320	1.76e-124	359
MsG0780041607.01.T01	AT3G05600	62.140	243	87	4	1	238	1	243	3.54e-111	323
MsG0780041607.01.T01	AT4G15955	50.920	326	122	4	5	319	6	304	1.38e-110	323
MsG0780041607.01.T01	AT3G51000	46.483	327	154	6	3	319	4	319	9.86e-103	304
MsG0780041607.01.T01	AT4G15955	59.770	174	60	2	5	168	6	179	6.47e-71	218
MsG0780041607.01.T01	AT4G15955	60.606	165	55	2	5	159	6	170	2.74e-67	209

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Find 91 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCATATTGCTGAGAA+AGG	0.485302	7:+92975685	MsG0780041607.01.T01:CDS
AAACGACAGATAGAGATGGA+AGG	0.647201	7:+92975628	None:intergenic
AAGGAGTATATCCATGGTGG+AGG	0.549978	7:+92977166	MsG0780041607.01.T01:CDS
AAGGTGAAGGAGTATATCCA+TGG	0.634923	7:+92977160	MsG0780041607.01.T01:CDS
ACAATCACTTCTTCCAAATT+CGG	0.378669	7:-92977205	None:intergenic
ACATAGGCTTTGATTCTTTC+AGG	0.119767	7:-92975988	None:intergenic
AGAGTTCGGGGAAGCCGTGA+AGG	0.588682	7:-92975732	None:intergenic
AGCCAAGAAGGCAATTTGTC+AGG	0.405805	7:-92976571	None:intergenic
AGCGACCGCCCGGTAACCAA+GGG	0.609778	7:-92975791	None:intergenic
AGCTGAGAGCAACAATCTGG+TGG	0.629150	7:-92975768	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGCATATTGCTGAGAA+AGG	+	Chr7:92975685-92975704	MsG0780041607.01.T01:CDS	30.0%
ACAATCACTTCTTCCAAATT+CGG	-	Chr7:92977208-92977227	None:intergenic	30.0%
ATGTCGTCCCAAAAAAAAAA+AGG	-	Chr7:92976866-92976885	None:intergenic	30.0%
ATTTATACCTGCAATATGAC+GGG	-	Chr7:92976367-92976386	None:intergenic	30.0%
GCAAATCTATAAGTGCAATA+AGG	-	Chr7:92975894-92975913	None:intergenic	30.0%
GTTTCCAAATTTGAGAAAAC+GGG	+	Chr7:92976619-92976638	MsG0780041607.01.T01:CDS	30.0%
TATCTATGAGTCATACTCAA+TGG	+	Chr7:92976208-92976227	MsG0780041607.01.T01:intron	30.0%
TGACTCATAGATATAGTTCA+AGG	-	Chr7:92976201-92976220	None:intergenic	30.0%
AGATCACTCTTTATGAACCA+CGG	-	Chr7:92977008-92977027	None:intergenic	35.0%
ATGGAATGGAGTGAAAATCA+AGG	+	Chr7:92977087-92977106	MsG0780041607.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	92975643	92977312	92975643	ID=MsG0780041607.01;Name=MsG0780041607.01
Chr7	mRNA	92975643	92977312	92975643	ID=MsG0780041607.01.T01;Parent=MsG0780041607.01;Name=MsG0780041607.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|0\|0\|1\|1\|1\|3\|0\|319
Chr7	exon	92975643	92976110	92975643	ID=MsG0780041607.01.T01:exon:40785;Parent=MsG0780041607.01.T01
Chr7	exon	92976436	92976680	92976436	ID=MsG0780041607.01.T01:exon:40786;Parent=MsG0780041607.01.T01
Chr7	exon	92977066	92977312	92977066	ID=MsG0780041607.01.T01:exon:40787;Parent=MsG0780041607.01.T01
Chr7	CDS	92975643	92976110	92975643	ID=MsG0780041607.01.T01:cds;Parent=MsG0780041607.01.T01
Chr7	CDS	92976436	92976680	92976436	ID=MsG0780041607.01.T01:cds;Parent=MsG0780041607.01.T01
Chr7	CDS	92977066	92977312	92977066	ID=MsG0780041607.01.T01:cds;Parent=MsG0780041607.01.T01

Gene Sequence

>MsG0780041607.01.T01

ATGGAAGGAATAGAACACAGAACAGTGGAAGTGAATGGAATCAAAATGCATATTGCTGAGAAAGGAAAAGAAGGTCCAGTTGTTTTGTTCCTTCACGGCTTCCCCGAACTCTGGTATTCATGGCGCCACCAGATTGTTGCTCTCAGCTCCCTTGGTTACCGGGCGGTCGCTCCAGATCTTCGTGGTTATGGTGACACTGAGGCTCCATCTTCAATAAGCAGCTACACAGGTTTTCACATTGTAGGTGACCTTATTGCACTTATAGATTTGCTTGGTGTTGATCAAGTGTTTCTTGTAGCTCATGATTGGGGTGCCATAATTGGTTGGTATCTTTGCATGTTTCGCCCTGAAAGAATCAAAGCCTATGTTTGTCTCAGTGTTCCATTTACGCGTAGAAACCCTAAAATCAGAACTGTTGATGGCATGCGTGCTGCTTATGGAGATGATTATTATATCTCTAGATTTCAGGAACCGGGCAAAATGGAAGCTCAGATGGCTGAAGTTGGCACTGCATATGTGATTAAAAATATCCTCACAACTCGCCAAACTGGTCCTCCAATACTTCCAAAGGGAGAGTATGGGACTGGATTCAACCCGGACACCCCTGACAAATTGCCTTCTTGGCTCACAGAAGATGATCTTGCTTATTTTGTTTCCAAATTTGAGAAAACGGGCTTTGTTGGAGGATTGAACTACTACAGAAACTTGAACTTAAATTGGGAGCTGATGGCACCATGGAATGGAGTGAAAATCAAGGTGCCTGTGAAATTCATTACAGGTGACTTGGACATTGTATACACCTCACCAAAGGTGAAGGAGTATATCCATGGTGGAGGGTTCAAGGAAGATGTGCCGAATTTGGAAGAAGTGATTGTCCAAAAAGGAGTGGCTCACTTCAACAATCAAGAAGCAGCAGAGGAAATCAGTAATCACATTTATGAATTCATCAAGAAGTTCTGA

Protein sequence

>MsG0780041607.01.T01

MEGIEHRTVEVNGIKMHIAEKGKEGPVVLFLHGFPELWYSWRHQIVALSSLGYRAVAPDLRGYGDTEAPSSISSYTGFHIVGDLIALIDLLGVDQVFLVAHDWGAIIGWYLCMFRPERIKAYVCLSVPFTRRNPKIRTVDGMRAAYGDDYYISRFQEPGKMEAQMAEVGTAYVIKNILTTRQTGPPILPKGEYGTGFNPDTPDKLPSWLTEDDLAYFVSKFEKTGFVGGLNYYRNLNLNWELMAPWNGVKIKVPVKFITGDLDIVYTSPKVKEYIHGGGFKEDVPNLEEVIVQKGVAHFNNQEAAEEISNHIYEFIKKF*