Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041613.01.T01 | XP_003626243.1 | 96.865 | 319 | 10 | 0 | 1 | 319 | 1 | 319 | 0 | 643 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041613.01.T01 | I6YGS0 | 36 | 325 | 190 | 6 | 1 | 316 | 1 | 316 | 7.77E-65 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041613.01.T01 | A2Q320 | 96.865 | 319 | 10 | 0 | 1 | 319 | 1 | 319 | 0.0 | 643 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0880047066.01 | MsG0780041613.01 | PPI |
| MsG0780041313.01 | MsG0780041613.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041613.01.T01 | MTR_7g113020 | 96.865 | 319 | 10 | 0 | 1 | 319 | 1 | 319 | 0.0 | 643 |
| MsG0780041613.01.T01 | MTR_7g112615 | 89.969 | 319 | 32 | 0 | 1 | 319 | 1 | 319 | 0.0 | 607 |
| MsG0780041613.01.T01 | MTR_7g113050 | 89.028 | 319 | 35 | 0 | 1 | 319 | 1 | 319 | 0.0 | 603 |
| MsG0780041613.01.T01 | MTR_7g112620 | 88.401 | 319 | 37 | 0 | 1 | 319 | 1 | 319 | 0.0 | 602 |
| MsG0780041613.01.T01 | MTR_7g113030 | 88.088 | 319 | 38 | 0 | 1 | 319 | 1 | 319 | 0.0 | 597 |
| MsG0780041613.01.T01 | MTR_7g112960 | 77.570 | 321 | 68 | 2 | 1 | 319 | 1 | 319 | 0.0 | 525 |
| MsG0780041613.01.T01 | MTR_7g112963 | 78.505 | 321 | 65 | 2 | 1 | 319 | 1 | 319 | 0.0 | 524 |
| MsG0780041613.01.T01 | MTR_7g112970 | 76.803 | 319 | 71 | 2 | 1 | 319 | 1 | 316 | 0.0 | 521 |
| MsG0780041613.01.T01 | MTR_4g005160 | 73.065 | 323 | 82 | 3 | 1 | 319 | 1 | 322 | 0.0 | 507 |
| MsG0780041613.01.T01 | MTR_7g112615 | 88.235 | 238 | 28 | 0 | 1 | 238 | 1 | 238 | 1.73e-161 | 450 |
| MsG0780041613.01.T01 | MTR_7g113050 | 87.815 | 238 | 29 | 0 | 1 | 238 | 1 | 238 | 4.24e-161 | 449 |
| MsG0780041613.01.T01 | MTR_7g113010 | 72.792 | 283 | 73 | 2 | 1 | 281 | 1 | 281 | 9.56e-153 | 441 |
| MsG0780041613.01.T01 | MTR_4g120240 | 62.305 | 321 | 117 | 3 | 1 | 319 | 37 | 355 | 1.85e-147 | 419 |
| MsG0780041613.01.T01 | MTR_7g108825 | 61.442 | 319 | 121 | 2 | 1 | 319 | 1 | 317 | 1.81e-145 | 412 |
| MsG0780041613.01.T01 | MTR_8g076680 | 47.335 | 319 | 164 | 3 | 1 | 319 | 3 | 317 | 2.15e-105 | 311 |
| MsG0780041613.01.T01 | MTR_7g112615 | 88.679 | 159 | 18 | 0 | 1 | 159 | 1 | 159 | 2.44e-103 | 300 |
| MsG0780041613.01.T01 | MTR_7g108825 | 59.244 | 238 | 95 | 2 | 1 | 238 | 1 | 236 | 1.01e-100 | 296 |
| MsG0780041613.01.T01 | MTR_7g112910 | 59.839 | 249 | 45 | 5 | 72 | 319 | 1 | 195 | 5.77e-92 | 272 |
| MsG0780041613.01.T01 | MTR_1g083480 | 74.843 | 159 | 36 | 2 | 1 | 156 | 1 | 158 | 1.02e-85 | 255 |
| MsG0780041613.01.T01 | MTR_8g076680 | 47.899 | 238 | 122 | 2 | 1 | 238 | 3 | 238 | 3.51e-80 | 244 |
| MsG0780041613.01.T01 | MTR_2g090240 | 36.449 | 321 | 190 | 7 | 1 | 318 | 1 | 310 | 5.67e-67 | 213 |
| MsG0780041613.01.T01 | MTR_4g089060 | 36.449 | 321 | 189 | 6 | 1 | 318 | 1 | 309 | 1.64e-64 | 206 |
| MsG0780041613.01.T01 | MTR_2g090245 | 35.514 | 321 | 193 | 7 | 1 | 318 | 1 | 310 | 2.33e-64 | 206 |
| MsG0780041613.01.T01 | MTR_4g089040 | 35.826 | 321 | 191 | 6 | 1 | 318 | 1 | 309 | 1.04e-62 | 201 |
| MsG0780041613.01.T01 | MTR_4g089060 | 33.908 | 348 | 188 | 7 | 1 | 318 | 1 | 336 | 2.44e-59 | 194 |
| MsG0780041613.01.T01 | MTR_3g024250 | 78.302 | 106 | 23 | 0 | 47 | 152 | 2 | 107 | 1.29e-56 | 180 |
| MsG0780041613.01.T01 | MTR_4g089060 | 38.627 | 233 | 134 | 3 | 1 | 231 | 1 | 226 | 1.99e-52 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041613.01.T01 | AT3G05600 | 64.506 | 324 | 110 | 4 | 1 | 319 | 1 | 324 | 2.34e-158 | 446 |
| MsG0780041613.01.T01 | AT4G02340 | 60.436 | 321 | 120 | 4 | 1 | 319 | 1 | 316 | 1.21e-145 | 413 |
| MsG0780041613.01.T01 | AT2G26740 | 62.733 | 322 | 113 | 4 | 4 | 319 | 1 | 321 | 6.47e-135 | 386 |
| MsG0780041613.01.T01 | AT4G15960 | 54.154 | 325 | 142 | 3 | 1 | 319 | 51 | 374 | 1.46e-129 | 374 |
| MsG0780041613.01.T01 | AT2G26750 | 60.436 | 321 | 121 | 4 | 4 | 319 | 1 | 320 | 1.14e-128 | 370 |
| MsG0780041613.01.T01 | AT3G05600 | 65.432 | 243 | 79 | 4 | 1 | 238 | 1 | 243 | 4.34e-116 | 335 |
| MsG0780041613.01.T01 | AT4G15955 | 50.613 | 326 | 123 | 4 | 5 | 319 | 6 | 304 | 6.09e-111 | 324 |
| MsG0780041613.01.T01 | AT3G51000 | 46.483 | 327 | 154 | 6 | 3 | 319 | 4 | 319 | 1.85e-102 | 303 |
| MsG0780041613.01.T01 | AT4G15955 | 59.770 | 174 | 60 | 2 | 5 | 168 | 6 | 179 | 5.14e-72 | 221 |
| MsG0780041613.01.T01 | AT4G15955 | 59.394 | 165 | 57 | 2 | 5 | 159 | 6 | 170 | 2.11e-67 | 209 |
Find 87 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+GGG | 0.175164 | 7:-93026067 | None:intergenic |
| CAAGGAAGATGTGCCGAATT+TGG | 0.238850 | 7:+93027111 | MsG0780041613.01.T01:CDS |
| GTGGGATTTCTATGGTTAAA+TGG | 0.244625 | 7:-93026103 | None:intergenic |
| TTATTATATATGCAGATTTC+AGG | 0.249339 | 7:+93026168 | MsG0780041613.01.T01:CDS |
| AGCCAAGTGGGCAAGGTGTC+AGG | 0.263626 | 7:-93026742 | None:intergenic |
| GTCTCCAAATTTGAGAAAAC+TGG | 0.263633 | 7:+93026790 | MsG0780041613.01.T01:CDS |
| AAAATGCATATTGCTGAAAA+AGG | 0.266560 | 7:+93025764 | MsG0780041613.01.T01:CDS |
| GAAATTCATTACAGGTGATT+TGG | 0.277422 | 7:+93027036 | MsG0780041613.01.T01:CDS |
| AACATAGGCTTTGATTCTTT+CGG | 0.285224 | 7:-93026068 | None:intergenic |
| CATTACAGGTGATTTGGATA+TGG | 0.296487 | 7:+93027042 | MsG0780041613.01.T01:CDS |
| GCAAAGATACCAACCAATTA+TGG | 0.300239 | 7:-93026035 | None:intergenic |
| GCTTCACTGTGGGATTTCTA+TGG | 0.303219 | 7:-93026111 | None:intergenic |
| ATACTTCCCAAGGGAGAGTT+TGG | 0.318913 | 7:+93026697 | MsG0780041613.01.T01:CDS |
| CATGATTGGGGTGCCATAAT+TGG | 0.322653 | 7:+93026022 | MsG0780041613.01.T01:CDS |
| TGTTTCTTGTGGCTCATGAT+TGG | 0.349713 | 7:+93026008 | MsG0780041613.01.T01:CDS |
| GTTTCTTGTGGCTCATGATT+GGG | 0.353911 | 7:+93026009 | MsG0780041613.01.T01:CDS |
| CCCCTGACACCTTGCCCACT+TGG | 0.359209 | 7:+93026740 | MsG0780041613.01.T01:CDS |
| GTCCTCACAACTCGCAAAAC+TGG | 0.362682 | 7:+93026667 | MsG0780041613.01.T01:CDS |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7:-93025824 | None:intergenic |
| CGCCACCAGATTGCTGCTCT+CGG | 0.393921 | 7:+93025845 | MsG0780041613.01.T01:CDS |
| CCCAAGGGAGAGTTTGGAAC+TGG | 0.394498 | 7:+93026703 | MsG0780041613.01.T01:CDS |
| ACAATCACTTCCTCCAAATT+CGG | 0.398594 | 7:-93027124 | None:intergenic |
| TCACCGTAGCCACGAAGATC+TGG | 0.407123 | 7:-93025893 | None:intergenic |
| GATGGTAGGCGTGCTGCTTA+TGG | 0.410127 | 7:+93026139 | MsG0780041613.01.T01:CDS |
| GAGGAAGTGATTGTGCAAAA+AGG | 0.414023 | 7:+93027133 | MsG0780041613.01.T01:CDS |
| GGCAAGGTGTCAGGGGTATC+CGG | 0.423975 | 7:-93026733 | None:intergenic |
| CCCACAGTGAAGCCTATTGA+TGG | 0.430826 | 7:+93026121 | MsG0780041613.01.T01:CDS |
| GTGCCTGTGAAATTCATTAC+AGG | 0.432209 | 7:+93027028 | MsG0780041613.01.T01:CDS |
| CTAATTGTATTGCAGAAATT+GGG | 0.433325 | 7:+93026970 | MsG0780041613.01.T01:intron |
| AACTCTCCCTTGGGAAGTAT+TGG | 0.434048 | 7:-93026694 | None:intergenic |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7:+93025822 | MsG0780041613.01.T01:CDS |
| GAGAGCCGAGAGCAGCAATC+TGG | 0.444182 | 7:-93025850 | None:intergenic |
| TCCAGTTCCAAACTCTCCCT+TGG | 0.447351 | 7:-93026704 | None:intergenic |
| TTTGAGAAAACTGGCTTCAC+CGG | 0.453864 | 7:+93026799 | MsG0780041613.01.T01:CDS |
| GTTGCTCTCATCGACTTGCT+TGG | 0.464883 | 7:+93025974 | MsG0780041613.01.T01:CDS |
| GCAGCACGCCTACCATCAAT+AGG | 0.474978 | 7:-93026133 | None:intergenic |
| ATTGCTGCTCTCGGCTCTCT+CGG | 0.478105 | 7:+93025854 | MsG0780041613.01.T01:CDS |
| TATCCATGGTGGAGGATTCA+AGG | 0.490724 | 7:+93027093 | MsG0780041613.01.T01:CDS |
| CCAGTTCCAAACTCTCCCTT+GGG | 0.499868 | 7:-93026703 | None:intergenic |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7:+93025813 | MsG0780041613.01.T01:CDS |
| GCTCCAGATCTTCGTGGCTA+CGG | 0.504735 | 7:+93025890 | MsG0780041613.01.T01:CDS |
| TCTCCCTTGGGAAGTATTGG+AGG | 0.509088 | 7:-93026691 | None:intergenic |
| TTCTGTGAGCCAAGTGGGCA+AGG | 0.510522 | 7:-93026749 | None:intergenic |
| CCGTGAAGGAACAAAACAAC+AGG | 0.513488 | 7:-93025797 | None:intergenic |
| CACAGAACAGTGGAAGTGAA+TGG | 0.515742 | 7:+93025737 | MsG0780041613.01.T01:CDS |
| GTTTGGAACTGGATTCAATC+CGG | 0.516376 | 7:+93026714 | MsG0780041613.01.T01:CDS |
| GCTGTTGCTCCAGATCTTCG+TGG | 0.527210 | 7:+93025884 | MsG0780041613.01.T01:CDS |
| TCTATAGTAATTCAATCCTC+CGG | 0.530404 | 7:-93026818 | None:intergenic |
| TTTCTTGTGGCTCATGATTG+GGG | 0.538324 | 7:+93026010 | MsG0780041613.01.T01:CDS |
| TTATCTATATTACAGGAACC+TGG | 0.544877 | 7:+93026592 | MsG0780041613.01.T01:intron |
| GCCAAGTGGGCAAGGTGTCA+GGG | 0.551540 | 7:-93026741 | None:intergenic |
| AATAGAAGCTGAGATAGCTC+AGG | 0.557396 | 7:+93026618 | MsG0780041613.01.T01:CDS |
| TCATCTTCTGTGAGCCAAGT+GGG | 0.568184 | 7:-93026754 | None:intergenic |
| AGCCGAGAGCAGCAATCTGG+TGG | 0.568882 | 7:-93025847 | None:intergenic |
| TCACCTGTAATGAATTTCAC+AGG | 0.570947 | 7:-93027031 | None:intergenic |
| TGGTCCTCCAATACTTCCCA+AGG | 0.570977 | 7:+93026687 | MsG0780041613.01.T01:CDS |
| GGAAGATGTGCCGAATTTGG+AGG | 0.573365 | 7:+93027114 | MsG0780041613.01.T01:CDS |
| CAACAATCAAGAAGCTGCAG+AGG | 0.574119 | 7:+93027168 | MsG0780041613.01.T01:CDS |
| AAGGAGTATATCCATGGTGG+AGG | 0.581533 | 7:+93027085 | MsG0780041613.01.T01:CDS |
| TGGAACACTGAGACAAACAT+AGG | 0.583516 | 7:-93026083 | None:intergenic |
| TTGTCTGACTATTTGATGTG+CGG | 0.595124 | 7:-93027238 | None:intergenic |
| CATAGGCTTTGATTCTTTCG+GGG | 0.596158 | 7:-93026066 | None:intergenic |
| CAGTGAAGCCTATTGATGGT+AGG | 0.598963 | 7:+93026125 | MsG0780041613.01.T01:CDS |
| GCTAATCGAAGTCGGAGCAT+CGG | 0.599379 | 7:-93025918 | None:intergenic |
| ATGGAGTGGAGTGAAAATCA+AGG | 0.603056 | 7:+93027006 | MsG0780041613.01.T01:CDS |
| GAGAAAACTGGCTTCACCGG+AGG | 0.603917 | 7:+93026802 | MsG0780041613.01.T01:CDS |
| TCTCATCGACTTGCTTGGTG+TGG | 0.620782 | 7:+93025979 | MsG0780041613.01.T01:CDS |
| ATTGGGGTGCCATAATTGGT+TGG | 0.621886 | 7:+93026026 | MsG0780041613.01.T01:CDS |
| CATGTGAAGGAGTATATCCA+TGG | 0.624062 | 7:+93027079 | MsG0780041613.01.T01:CDS |
| GTACACCTCGCCACATGTGA+AGG | 0.626457 | 7:+93027066 | MsG0780041613.01.T01:CDS |
| CCAAGTGGGCAAGGTGTCAG+GGG | 0.627753 | 7:-93026740 | None:intergenic |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7:-93025811 | None:intergenic |
| GAGCTCACAGCACCATGGAG+TGG | 0.632984 | 7:+93026992 | MsG0780041613.01.T01:CDS |
| GCGTAGCTGCTAATCGAAGT+CGG | 0.636584 | 7:-93025926 | None:intergenic |
| TGGATATACTCCTTCACATG+TGG | 0.645588 | 7:-93027076 | None:intergenic |
| CCATCAATAGGCTTCACTGT+GGG | 0.651934 | 7:-93026121 | None:intergenic |
| GAAGCTGAGATAGCTCAGGT+TGG | 0.661961 | 7:+93026622 | MsG0780041613.01.T01:CDS |
| TGTGGAACAAGTGTTTCTTG+TGG | 0.662042 | 7:+93025997 | MsG0780041613.01.T01:CDS |
| ATCATCTTCTGTGAGCCAAG+TGG | 0.662860 | 7:-93026755 | None:intergenic |
| ATACTCCTTCACATGTGGCG+AGG | 0.664549 | 7:-93027071 | None:intergenic |
| ATTGGGAGCTCACAGCACCA+TGG | 0.668315 | 7:+93026987 | MsG0780041613.01.T01:CDS |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7:+93025727 | MsG0780041613.01.T01:CDS |
| GAAGATCTGGAGCAACAGCA+CGG | 0.677123 | 7:-93025880 | None:intergenic |
| CTTCCTTGAATCCTCCACCA+TGG | 0.680547 | 7:-93027096 | None:intergenic |
| GGTCCTCCAATACTTCCCAA+GGG | 0.690564 | 7:+93026688 | MsG0780041613.01.T01:CDS |
| GTGAAGGAGTATATCCATGG+TGG | 0.691244 | 7:+93027082 | MsG0780041613.01.T01:CDS |
| ACCATCAATAGGCTTCACTG+TGG | 0.749226 | 7:-93026122 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAATCAATTATGTTAAT+CGG | - | Chr7:93026245-93026264 | None:intergenic | 15.0% |
| !! | ATCAATTATTAAGAATTACT+AGG | - | Chr7:93026218-93026237 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTATCTATATTAC+AGG | + | Chr7:93026585-93026604 | MsG0780041613.01.T01:intron | 15.0% |
| !! | AATGATTCCAAATATTATAC+TGG | - | Chr7:93026504-93026523 | None:intergenic | 20.0% |
| !! | AGTTTAAATTATTCACAAAC+AGG | - | Chr7:93026338-93026357 | None:intergenic | 20.0% |
| !! | ATATTTGTCGAAAACAATTA+TGG | - | Chr7:93026879-93026898 | None:intergenic | 20.0% |
| !! | ATTACTAGGAATATTAGTTA+TGG | - | Chr7:93026204-93026223 | None:intergenic | 20.0% |
| !! | GTTTGTGAATAATTTAAACT+AGG | + | Chr7:93026338-93026357 | MsG0780041613.01.T01:intron | 20.0% |
| !! | TTATTATATATGCAGATTTC+AGG | + | Chr7:93026168-93026187 | MsG0780041613.01.T01:CDS | 20.0% |
| !!! | ATAAATCAACTATCCTTTTT+GGG | + | Chr7:93026897-93026916 | MsG0780041613.01.T01:intron | 20.0% |
| !!! | GAACAATTTAACAAAGTATT+AGG | + | Chr7:93026387-93026406 | MsG0780041613.01.T01:intron | 20.0% |
| !!! | TATAAATCAACTATCCTTTT+TGG | + | Chr7:93026896-93026915 | MsG0780041613.01.T01:intron | 20.0% |
| ! | AAAATGCATATTGCTGAAAA+AGG | + | Chr7:93025764-93025783 | MsG0780041613.01.T01:CDS | 25.0% |
| ! | ACTAATTGTATTGCAGAAAT+TGG | + | Chr7:93026969-93026988 | MsG0780041613.01.T01:intron | 25.0% |
| ! | CTAATTGTATTGCAGAAATT+GGG | + | Chr7:93026970-93026989 | MsG0780041613.01.T01:intron | 25.0% |
| ! | GTTTAACTGTCATTAGAATT+CGG | - | Chr7:93026951-93026970 | None:intergenic | 25.0% |
| ! | TGATACATGAGAATTAAACA+AGG | + | Chr7:93026416-93026435 | MsG0780041613.01.T01:intron | 25.0% |
| !! | TAAATCAACTATCCTTTTTG+GGG | + | Chr7:93026898-93026917 | MsG0780041613.01.T01:intron | 25.0% |
| ATTGCTGAAAAAGGAAAAGA+AGG | + | Chr7:93025773-93025792 | MsG0780041613.01.T01:CDS | 30.0% | |
| GAAATTCATTACAGGTGATT+TGG | + | Chr7:93027036-93027055 | MsG0780041613.01.T01:CDS | 30.0% | |
| GAATTGCTATAATGGTAGAT+AGG | + | Chr7:93026551-93026570 | MsG0780041613.01.T01:intron | 30.0% | |
| TAATTAATCTCACGCTTCTA+TGG | + | Chr7:93026269-93026288 | MsG0780041613.01.T01:intron | 30.0% | |
| TCTATAGTAATTCAATCCTC+CGG | - | Chr7:93026821-93026840 | None:intergenic | 30.0% | |
| TCTTGTCAATTTAGATTGAG+TGG | + | Chr7:93026446-93026465 | MsG0780041613.01.T01:intron | 30.0% | |
| TGAAGTGAGAATTGCTATAA+TGG | + | Chr7:93026543-93026562 | MsG0780041613.01.T01:intron | 30.0% | |
| TTATCTATATTACAGGAACC+TGG | + | Chr7:93026592-93026611 | MsG0780041613.01.T01:intron | 30.0% | |
| ! | AACATAGGCTTTGATTCTTT+CGG | - | Chr7:93026071-93026090 | None:intergenic | 30.0% |
| ACAATCACTTCCTCCAAATT+CGG | - | Chr7:93027127-93027146 | None:intergenic | 35.0% | |
| GCAAAGATACCAACCAATTA+TGG | - | Chr7:93026038-93026057 | None:intergenic | 35.0% | |
| GCACAAATATTTCCCCAAAA+AGG | - | Chr7:93026913-93026932 | None:intergenic | 35.0% | |
| GTCTCCAAATTTGAGAAAAC+TGG | + | Chr7:93026790-93026809 | MsG0780041613.01.T01:CDS | 35.0% | |
| GTGGGATTTCTATGGTTAAA+TGG | - | Chr7:93026106-93026125 | None:intergenic | 35.0% | |
| TCACCTGTAATGAATTTCAC+AGG | - | Chr7:93027034-93027053 | None:intergenic | 35.0% | |
| TGGAGCTCCAGTATAATATT+TGG | + | Chr7:93026494-93026513 | MsG0780041613.01.T01:intron | 35.0% | |
| ! | ACATAGGCTTTGATTCTTTC+GGG | - | Chr7:93026070-93026089 | None:intergenic | 35.0% |
| ! | CATTACAGGTGATTTGGATA+TGG | + | Chr7:93027042-93027061 | MsG0780041613.01.T01:CDS | 35.0% |
| ! | GAAGCCAGTTTTCTCAAATT+TGG | - | Chr7:93026797-93026816 | None:intergenic | 35.0% |
| ! | GATGATGGTGTGTTATGTTA+TGG | + | Chr7:93026474-93026493 | MsG0780041613.01.T01:intron | 35.0% |
| ! | TACGCATGTTTTCACATAGT+AGG | + | Chr7:93025944-93025963 | MsG0780041613.01.T01:CDS | 35.0% |
| AATAGAAGCTGAGATAGCTC+AGG | + | Chr7:93026618-93026637 | MsG0780041613.01.T01:CDS | 40.0% | |
| AGGAATAGAACACAGAACAG+TGG | + | Chr7:93025727-93025746 | MsG0780041613.01.T01:CDS | 40.0% | |
| ATGGAGTGGAGTGAAAATCA+AGG | + | Chr7:93027006-93027025 | MsG0780041613.01.T01:CDS | 40.0% | |
| GAGGAAGTGATTGTGCAAAA+AGG | + | Chr7:93027133-93027152 | MsG0780041613.01.T01:CDS | 40.0% | |
| GATTGAGTGGTGTTTGATGA+TGG | + | Chr7:93026459-93026478 | MsG0780041613.01.T01:intron | 40.0% | |
| GTGCCTGTGAAATTCATTAC+AGG | + | Chr7:93027028-93027047 | MsG0780041613.01.T01:CDS | 40.0% | |
| GTTTCTTGTGGCTCATGATT+GGG | + | Chr7:93026009-93026028 | MsG0780041613.01.T01:CDS | 40.0% | |
| TGGAACACTGAGACAAACAT+AGG | - | Chr7:93026086-93026105 | None:intergenic | 40.0% | |
| TGGATATACTCCTTCACATG+TGG | - | Chr7:93027079-93027098 | None:intergenic | 40.0% | |
| TGTGGAACAAGTGTTTCTTG+TGG | + | Chr7:93025997-93026016 | MsG0780041613.01.T01:CDS | 40.0% | |
| TGTTTCTTGTGGCTCATGAT+TGG | + | Chr7:93026008-93026027 | MsG0780041613.01.T01:CDS | 40.0% | |
| TTTCTTGTGGCTCATGATTG+GGG | + | Chr7:93026010-93026029 | MsG0780041613.01.T01:CDS | 40.0% | |
| ! | ATCTCAGCTTCTATTTTGCC+AGG | - | Chr7:93026613-93026632 | None:intergenic | 40.0% |
| ! | CATAGGCTTTGATTCTTTCG+GGG | - | Chr7:93026069-93026088 | None:intergenic | 40.0% |
| ! | CATGTGAAGGAGTATATCCA+TGG | + | Chr7:93027079-93027098 | MsG0780041613.01.T01:CDS | 40.0% |
| ! | GTTTGGAACTGGATTCAATC+CGG | + | Chr7:93026714-93026733 | MsG0780041613.01.T01:CDS | 40.0% |
| ! | TTGATTTTCACTCCACTCCA+TGG | - | Chr7:93027007-93027026 | None:intergenic | 40.0% |
| ! | TTTGAGAAAACTGGCTTCAC+CGG | + | Chr7:93026799-93026818 | MsG0780041613.01.T01:CDS | 40.0% |
| !!! | CCTGTTGTTTTGTTCCTTCA+CGG | + | Chr7:93025797-93025816 | MsG0780041613.01.T01:CDS | 40.0% |
| ACCATCAATAGGCTTCACTG+TGG | - | Chr7:93026125-93026144 | None:intergenic | 45.0% | |
| ATACTTCCCAAGGGAGAGTT+TGG | + | Chr7:93026697-93026716 | MsG0780041613.01.T01:CDS | 45.0% | |
| ATCATCTTCTGTGAGCCAAG+TGG | - | Chr7:93026758-93026777 | None:intergenic | 45.0% | |
| CAACAATCAAGAAGCTGCAG+AGG | + | Chr7:93027168-93027187 | MsG0780041613.01.T01:CDS | 45.0% | |
| CAAGGAAGATGTGCCGAATT+TGG | + | Chr7:93027111-93027130 | MsG0780041613.01.T01:CDS | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | + | Chr7:93025737-93025756 | MsG0780041613.01.T01:CDS | 45.0% | |
| CCATCAATAGGCTTCACTGT+GGG | - | Chr7:93026124-93026143 | None:intergenic | 45.0% | |
| CCGTGAAGGAACAAAACAAC+AGG | - | Chr7:93025800-93025819 | None:intergenic | 45.0% | |
| GCTTCACTGTGGGATTTCTA+TGG | - | Chr7:93026114-93026133 | None:intergenic | 45.0% | |
| GGGGAAATATTTGTGCAAGC+AGG | + | Chr7:93026917-93026936 | MsG0780041613.01.T01:intron | 45.0% | |
| TCATCTTCTGTGAGCCAAGT+GGG | - | Chr7:93026757-93026776 | None:intergenic | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | + | Chr7:93025822-93025841 | MsG0780041613.01.T01:CDS | 45.0% | |
| ! | AACTCTCCCTTGGGAAGTAT+TGG | - | Chr7:93026697-93026716 | None:intergenic | 45.0% |
| ! | AAGGAGTATATCCATGGTGG+AGG | + | Chr7:93027085-93027104 | MsG0780041613.01.T01:CDS | 45.0% |
| ! | ATTGGGGTGCCATAATTGGT+TGG | + | Chr7:93026026-93026045 | MsG0780041613.01.T01:CDS | 45.0% |
| ! | CAGTGAAGCCTATTGATGGT+AGG | + | Chr7:93026125-93026144 | MsG0780041613.01.T01:CDS | 45.0% |
| ! | CATGATTGGGGTGCCATAAT+TGG | + | Chr7:93026022-93026041 | MsG0780041613.01.T01:CDS | 45.0% |
| ! | GTGAAGGAGTATATCCATGG+TGG | + | Chr7:93027082-93027101 | MsG0780041613.01.T01:CDS | 45.0% |
| ! | TATCCATGGTGGAGGATTCA+AGG | + | Chr7:93027093-93027112 | MsG0780041613.01.T01:CDS | 45.0% |
| AGAGTTCAGGAAAGCCGTGA+AGG | - | Chr7:93025814-93025833 | None:intergenic | 50.0% | |
| ATACTCCTTCACATGTGGCG+AGG | - | Chr7:93027074-93027093 | None:intergenic | 50.0% | |
| CCAGTTCCAAACTCTCCCTT+GGG | - | Chr7:93026706-93026725 | None:intergenic | 50.0% | |
| CCCACAGTGAAGCCTATTGA+TGG | + | Chr7:93026121-93026140 | MsG0780041613.01.T01:CDS | 50.0% | |
| CTCACGCTTCTATGGTGTGT+TGG | + | Chr7:93026277-93026296 | MsG0780041613.01.T01:intron | 50.0% | |
| CTTCCTTGAATCCTCCACCA+TGG | - | Chr7:93027099-93027118 | None:intergenic | 50.0% | |
| GAAGCTGAGATAGCTCAGGT+TGG | + | Chr7:93026622-93026641 | MsG0780041613.01.T01:CDS | 50.0% | |
| GCGTAGCTGCTAATCGAAGT+CGG | - | Chr7:93025929-93025948 | None:intergenic | 50.0% | |
| GCTAATCGAAGTCGGAGCAT+CGG | - | Chr7:93025921-93025940 | None:intergenic | 50.0% | |
| GGAAGATGTGCCGAATTTGG+AGG | + | Chr7:93027114-93027133 | MsG0780041613.01.T01:CDS | 50.0% | |
| GGTCCTCCAATACTTCCCAA+GGG | + | Chr7:93026688-93026707 | MsG0780041613.01.T01:CDS | 50.0% | |
| GTCCTCACAACTCGCAAAAC+TGG | + | Chr7:93026667-93026686 | MsG0780041613.01.T01:CDS | 50.0% | |
| TCCAGTTCCAAACTCTCCCT+TGG | - | Chr7:93026707-93026726 | None:intergenic | 50.0% | |
| TGGTCCTCCAATACTTCCCA+AGG | + | Chr7:93026687-93026706 | MsG0780041613.01.T01:CDS | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | + | Chr7:93025813-93025832 | MsG0780041613.01.T01:CDS | 50.0% | |
| ! | GAAGATCTGGAGCAACAGCA+CGG | - | Chr7:93025883-93025902 | None:intergenic | 50.0% |
| ! | GACCAGTTTTGCGAGTTGTG+AGG | - | Chr7:93026672-93026691 | None:intergenic | 50.0% |
| !! | GTTGCTCTCATCGACTTGCT+TGG | + | Chr7:93025974-93025993 | MsG0780041613.01.T01:CDS | 50.0% |
| !! | TCTCATCGACTTGCTTGGTG+TGG | + | Chr7:93025979-93025998 | MsG0780041613.01.T01:CDS | 50.0% |
| !! | TCTCCCTTGGGAAGTATTGG+AGG | - | Chr7:93026694-93026713 | None:intergenic | 50.0% |
| ATTGCTGCTCTCGGCTCTCT+CGG | + | Chr7:93025854-93025873 | MsG0780041613.01.T01:CDS | 55.0% | |
| ATTGGGAGCTCACAGCACCA+TGG | + | Chr7:93026987-93027006 | MsG0780041613.01.T01:CDS | 55.0% | |
| GCAGCACGCCTACCATCAAT+AGG | - | Chr7:93026136-93026155 | None:intergenic | 55.0% | |
| GCTCCAGATCTTCGTGGCTA+CGG | + | Chr7:93025890-93025909 | MsG0780041613.01.T01:CDS | 55.0% | |
| GCTGTTGCTCCAGATCTTCG+TGG | + | Chr7:93025884-93025903 | MsG0780041613.01.T01:CDS | 55.0% | |
| GTACACCTCGCCACATGTGA+AGG | + | Chr7:93027066-93027085 | MsG0780041613.01.T01:CDS | 55.0% | |
| TCACCGTAGCCACGAAGATC+TGG | - | Chr7:93025896-93025915 | None:intergenic | 55.0% | |
| TTCTGTGAGCCAAGTGGGCA+AGG | - | Chr7:93026752-93026771 | None:intergenic | 55.0% | |
| ! | CCCAAGGGAGAGTTTGGAAC+TGG | + | Chr7:93026703-93026722 | MsG0780041613.01.T01:CDS | 55.0% |
| ! | GAGAAAACTGGCTTCACCGG+AGG | + | Chr7:93026802-93026821 | MsG0780041613.01.T01:CDS | 55.0% |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | - | Chr7:93025827-93025846 | None:intergenic | 55.0% |
| !! | GATGGTAGGCGTGCTGCTTA+TGG | + | Chr7:93026139-93026158 | MsG0780041613.01.T01:CDS | 55.0% |
| AGCCGAGAGCAGCAATCTGG+TGG | - | Chr7:93025850-93025869 | None:intergenic | 60.0% | |
| CGCCACCAGATTGCTGCTCT+CGG | + | Chr7:93025845-93025864 | MsG0780041613.01.T01:CDS | 60.0% | |
| GAGAGCCGAGAGCAGCAATC+TGG | - | Chr7:93025853-93025872 | None:intergenic | 60.0% | |
| GAGCTCACAGCACCATGGAG+TGG | + | Chr7:93026992-93027011 | MsG0780041613.01.T01:CDS | 60.0% | |
| ! | AGCCAAGTGGGCAAGGTGTC+AGG | - | Chr7:93026745-93026764 | None:intergenic | 60.0% |
| ! | CCAAGTGGGCAAGGTGTCAG+GGG | - | Chr7:93026743-93026762 | None:intergenic | 60.0% |
| ! | GCCAAGTGGGCAAGGTGTCA+GGG | - | Chr7:93026744-93026763 | None:intergenic | 60.0% |
| !! | GGCAAGGTGTCAGGGGTATC+CGG | - | Chr7:93026736-93026755 | None:intergenic | 60.0% |
| CCCCTGACACCTTGCCCACT+TGG | + | Chr7:93026740-93026759 | MsG0780041613.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 93025722 | 93027251 | 93025722 | ID=MsG0780041613.01;Name=MsG0780041613.01 |
| Chr7 | mRNA | 93025722 | 93027251 | 93025722 | ID=MsG0780041613.01.T01;Parent=MsG0780041613.01;Name=MsG0780041613.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.5|0.33|1|1|1|3|20|319 |
| Chr7 | exon | 93025722 | 93026189 | 93025722 | ID=MsG0780041613.01.T01:exon:40805;Parent=MsG0780041613.01.T01 |
| Chr7 | exon | 93026607 | 93026851 | 93026607 | ID=MsG0780041613.01.T01:exon:40806;Parent=MsG0780041613.01.T01 |
| Chr7 | exon | 93026985 | 93027251 | 93026985 | ID=MsG0780041613.01.T01:exon:40807;Parent=MsG0780041613.01.T01 |
| Chr7 | CDS | 93025722 | 93026189 | 93025722 | ID=MsG0780041613.01.T01:cds;Parent=MsG0780041613.01.T01 |
| Chr7 | CDS | 93026607 | 93026851 | 93026607 | ID=MsG0780041613.01.T01:cds;Parent=MsG0780041613.01.T01 |
| Chr7 | CDS | 93026985 | 93027231 | 93026985 | ID=MsG0780041613.01.T01:cds;Parent=MsG0780041613.01.T01 |
| Chr7 | three_prime_UTR | 93027232 | 93027251 | 93027232 | ID=MsG0780041613.01.T01:three_prime_utr;Parent=MsG0780041613.01.T01 |
| Gene Sequence |
| Protein sequence |
