AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041815.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041815.01.T01 MTR_7g117455 82.536 418 46 8 15 427 62 457 0.0 576
MsG0780041815.01.T01 MTR_8g023990 43.596 445 141 17 22 419 127 508 1.43e-87 276
MsG0780041815.01.T01 MTR_1g058350 64.885 131 40 3 54 180 53 181 7.49e-49 169
MsG0780041815.01.T01 MTR_7g105370 74.257 101 23 2 79 179 65 162 2.30e-45 159
MsG0780041815.01.T01 MTR_5g053920 65.812 117 30 2 71 179 191 305 4.06e-45 160
MsG0780041815.01.T01 MTR_1g093600 52.632 152 53 3 71 205 188 337 9.72e-43 154
MsG0780041815.01.T01 MTR_1g116920 46.617 133 50 4 30 162 135 246 4.22e-29 115
MsG0780041815.01.T01 MTR_2g014770 39.815 108 64 1 57 163 140 247 8.04e-15 77.0
MsG0780041815.01.T01 MTR_2g014770 39.815 108 64 1 57 163 140 247 1.02e-14 76.6
MsG0780041815.01.T01 MTR_5g075410 35.185 108 65 3 57 162 304 408 5.53e-14 74.7
MsG0780041815.01.T01 MTR_4g028130 40.659 91 49 3 74 162 314 401 5.68e-14 74.7
MsG0780041815.01.T01 MTR_4g028130 40.659 91 49 3 74 162 314 401 6.55e-14 74.3
MsG0780041815.01.T01 MTR_4g028130 39.560 91 50 3 74 162 314 401 8.51e-14 73.9
MsG0780041815.01.T01 MTR_3g467380 37.037 108 63 3 57 162 321 425 1.43e-13 73.2
MsG0780041815.01.T01 MTR_2g011940 38.679 106 57 4 74 177 343 442 2.90e-13 72.4
MsG0780041815.01.T01 MTR_7g073240 40.659 91 49 3 74 162 121 208 3.77e-13 70.9
MsG0780041815.01.T01 MTR_2g011940 38.679 106 57 4 74 177 352 451 3.90e-13 71.6
MsG0780041815.01.T01 MTR_2g011940 38.679 106 57 4 74 177 352 451 4.97e-13 71.2
MsG0780041815.01.T01 MTR_4g088210 39.000 100 60 1 65 163 138 237 1.41e-12 70.1
MsG0780041815.01.T01 MTR_4g088210 39.000 100 60 1 65 163 138 237 1.63e-12 69.7
MsG0780041815.01.T01 MTR_8g106540 71.429 42 10 1 345 386 118 157 2.97e-11 64.3
MsG0780041815.01.T01 MTR_4g060460 36.111 108 68 1 73 179 164 271 4.35e-11 65.5
MsG0780041815.01.T01 MTR_4g060460 36.111 108 68 1 73 179 164 271 4.82e-11 65.5
MsG0780041815.01.T01 MTR_2g093740 36.111 108 68 1 73 179 166 273 8.49e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041815.01.T01 AT1G01030 76.562 128 29 1 70 196 51 178 1.35e-63 208
MsG0780041815.01.T01 AT1G01030 80.165 121 23 1 70 189 51 171 8.53e-62 204
MsG0780041815.01.T01 AT2G46870 62.209 172 49 4 53 218 8 169 5.82e-61 200
MsG0780041815.01.T01 AT3G61970 64.331 157 50 3 54 206 2 156 3.25e-60 198
MsG0780041815.01.T01 AT4G01500 41.615 322 93 13 71 376 32 274 9.13e-58 193
MsG0780041815.01.T01 AT3G11580 63.492 126 33 2 66 180 20 143 3.34e-50 170
MsG0780041815.01.T01 AT3G11580 63.492 126 33 2 66 180 20 143 3.34e-50 170
MsG0780041815.01.T01 AT3G11580 63.492 126 33 2 66 180 20 143 3.34e-50 170
MsG0780041815.01.T01 AT3G11580 63.492 126 33 2 66 180 20 143 1.16e-49 169
MsG0780041815.01.T01 AT3G11580 63.492 126 33 2 66 180 20 143 1.44e-48 170
MsG0780041815.01.T01 AT2G36080 69.231 117 31 2 67 180 30 144 1.30e-47 161
MsG0780041815.01.T01 AT2G36080 69.231 117 31 2 67 180 30 144 1.30e-47 161
MsG0780041815.01.T01 AT2G36080 69.231 117 31 2 67 180 30 144 1.87e-47 163
MsG0780041815.01.T01 AT2G36080 69.231 117 31 2 67 180 30 144 2.28e-47 162
MsG0780041815.01.T01 AT5G06250 65.000 120 30 2 71 180 42 159 3.76e-47 163
MsG0780041815.01.T01 AT5G06250 65.546 119 29 2 71 179 42 158 6.09e-47 163
MsG0780041815.01.T01 AT5G06250 65.000 120 30 2 71 180 42 159 6.84e-47 163
MsG0780041815.01.T01 AT5G06250 65.000 120 30 2 71 180 42 159 1.15e-46 162
MsG0780041815.01.T01 AT5G06250 65.000 120 30 2 71 180 42 159 1.20e-46 162
MsG0780041815.01.T01 AT1G13260 70.536 112 30 2 72 182 185 294 1.57e-46 164
MsG0780041815.01.T01 AT1G68840 68.966 116 32 3 67 180 180 293 1.82e-46 164
MsG0780041815.01.T01 AT1G68840 68.966 116 32 3 67 180 180 293 1.82e-46 164
MsG0780041815.01.T01 AT3G25730 57.463 134 48 3 54 180 158 289 2.83e-44 157
MsG0780041815.01.T01 AT1G25560 62.295 122 36 2 67 180 187 306 1.09e-43 156
MsG0780041815.01.T01 AT1G50680 50.000 100 39 2 73 161 155 254 1.33e-25 107
MsG0780041815.01.T01 AT1G51120 49.485 97 41 1 73 161 176 272 3.60e-24 103
MsG0780041815.01.T01 AT4G32010 41.053 95 51 3 74 166 285 376 3.36e-14 75.1
MsG0780041815.01.T01 AT4G32010 41.053 95 51 3 74 166 281 372 3.50e-14 75.1
MsG0780041815.01.T01 AT2G30470 39.560 91 50 3 74 162 294 381 1.04e-13 73.6
MsG0780041815.01.T01 AT2G33860 41.304 92 53 1 73 163 157 248 8.24e-12 67.4
MsG0780041815.01.T01 AT1G35240 37.864 103 58 2 75 171 126 228 1.70e-11 66.6
MsG0780041815.01.T01 AT2G33860 40.659 91 53 1 74 163 1 91 6.19e-11 64.3
MsG0780041815.01.T01 AT5G60450 34.426 122 79 1 59 179 137 258 6.26e-11 65.1
MsG0780041815.01.T01 AT5G60450 34.426 122 79 1 59 179 161 282 7.24e-11 64.7
MsG0780041815.01.T01 AT1G35520 36.893 103 59 2 75 171 126 228 7.57e-11 64.7

Find 137 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTCGATCTTCAAAATTT+AGG 0.195221 7:-95482872 None:intergenic
TTCAGTGGTGCCGGCGATAT+TGG 0.224155 7:-95483796 None:intergenic
GGAAAACGACTGAGACTATT+TGG 0.226531 7:+95483611 MsG0780041815.01.T01:CDS
CCCTCTTCTACAACAACTTC+TGG 0.253546 7:+95483710 MsG0780041815.01.T01:CDS
GTAGAAGGGGCAGCGTAATT+AGG 0.294314 7:-95483245 None:intergenic
AACTTCGCTGCACTTTGATT+TGG 0.298974 7:+95483760 MsG0780041815.01.T01:CDS
TACTTCTCTGCGTGCTGCTT+TGG 0.305864 7:-95482810 None:intergenic
GAAATTTACTTGTAAATGTT+TGG 0.321641 7:+95482536 MsG0780041815.01.T01:CDS
AAAGGCAGTGGAGGAGGAGG+AGG 0.323749 7:-95483131 None:intergenic
GAATCAATTATCATATTCAT+AGG 0.331308 7:-95483542 None:intergenic
GGCAGTGGAGGAGGAGGAGG+AGG 0.344007 7:-95483128 None:intergenic
GTGGTTGATGGTGGCGTAAT+TGG 0.354445 7:-95483437 None:intergenic
ATGGTAAGATGTGGAGGTTC+AGG 0.360401 7:+95482892 MsG0780041815.01.T01:CDS
TCAGTGGTGCCGGCGATATT+GGG 0.365725 7:-95483795 None:intergenic
CGCAGAGAAGTACTTCCCTT+TGG 0.372478 7:+95482821 MsG0780041815.01.T01:CDS
GAAAACGACTGAGACTATTT+GGG 0.373722 7:+95483612 MsG0780041815.01.T01:CDS
GGAGGTTCAGGTATTCATAT+TGG 0.376730 7:+95482904 MsG0780041815.01.T01:CDS
TGAGGATGAGATATTGTAGA+AGG 0.383802 7:-95483260 None:intergenic
CAGAGTTATGTGATGACAAA+AGG 0.396646 7:+95482936 MsG0780041815.01.T01:CDS
TAGAAAGGCAGTGGAGGAGG+AGG 0.402946 7:-95483134 None:intergenic
AGATAGAAAGGCAGTGGAGG+AGG 0.405784 7:-95483137 None:intergenic
TGAAGAGGAGATAGATTTGA+TGG 0.409738 7:+95482599 MsG0780041815.01.T01:CDS
CCACCAGCTGTGGTGGTTGA+TGG 0.413549 7:-95483449 None:intergenic
AAGGGCAATGACGAAGGATT+AGG 0.420096 7:+95482654 MsG0780041815.01.T01:CDS
GGGGCAGCGTAATTAGGATT+AGG 0.420563 7:-95483239 None:intergenic
AATCATCACTATTCATCATA+TGG 0.429981 7:+95483167 MsG0780041815.01.T01:CDS
TTGATGGAGTTAAGACTTGG+AGG 0.438088 7:+95482615 MsG0780041815.01.T01:CDS
GAGGGTGGAAGTTGACGATT+AGG 0.443967 7:-95483692 None:intergenic
CCTCTTCTACAACAACTTCT+GGG 0.444861 7:+95483711 MsG0780041815.01.T01:CDS
GACACAGATTGTACATAGAT+TGG 0.447780 7:+95483039 MsG0780041815.01.T01:CDS
GATATTGAGGGATGAGGTGG+TGG 0.450649 7:-95483106 None:intergenic
GGAAGATAGAAAGGCAGTGG+AGG 0.452590 7:-95483140 None:intergenic
GCGAGGAGGTGAGATAATAG+AGG 0.457021 7:-95483415 None:intergenic
GGAGGAAGATAGAAAGGCAG+TGG 0.458358 7:-95483143 None:intergenic
CCGCGGTGATGATGTGCAAC+TGG 0.459480 7:-95483569 None:intergenic
AGGTGATCAGCAGCAGGAGC+AGG 0.469663 7:-95483356 None:intergenic
GATTCTTCTACCAACGAGAA+AGG 0.473959 7:+95482843 MsG0780041815.01.T01:CDS
GAGTTAAGACTTGGAGGAGG+GGG 0.479014 7:+95482621 MsG0780041815.01.T01:CDS
TGGAGTTAAGACTTGGAGGA+GGG 0.479526 7:+95482619 MsG0780041815.01.T01:CDS
CGGCGATATTGGGAATTAGA+AGG 0.483289 7:-95483785 None:intergenic
CGAGGAGGTGAGATAATAGA+GGG 0.488870 7:-95483414 None:intergenic
AATGACGAAGGATTAGGAAT+AGG 0.489296 7:+95482660 MsG0780041815.01.T01:CDS
ATCATGATCATCATCACATA+GGG 0.492556 7:+95483735 MsG0780041815.01.T01:CDS
TATGATGAATAGTGATGATT+GGG 0.494045 7:-95483164 None:intergenic
TAGGAAGGTGGGAATATTGA+GGG 0.497693 7:-95483220 None:intergenic
CAGCAGCAGGAGCAGGGTGG+TGG 0.502611 7:-95483349 None:intergenic
GAGGATGAGATATTGTAGAA+GGG 0.507152 7:-95483259 None:intergenic
CCACCATCAACCACCACAGC+TGG 0.507318 7:+95483446 MsG0780041815.01.T01:CDS
TTGTAAATGTTTGGTACAAG+TGG 0.508831 7:+95482545 MsG0780041815.01.T01:CDS
ATTCTTCTACCAACGAGAAA+GGG 0.509922 7:+95482844 MsG0780041815.01.T01:CDS
ATATGATGAATAGTGATGAT+TGG 0.513248 7:-95483165 None:intergenic
TTCTTCAAATTCAAAGGATG+AGG 0.513842 7:+95482686 MsG0780041815.01.T01:CDS
GATTTGATGGAGTTAAGACT+TGG 0.514471 7:+95482612 MsG0780041815.01.T01:CDS
TTCAAAGGATGAGGAGGAGG+AGG 0.515652 7:+95482695 MsG0780041815.01.T01:CDS
GTTTCTTCTCCTTAACGAAA+CGG 0.517535 7:-95482965 None:intergenic
TTCTTCTTCAGCACCACCAC+AGG 0.518188 7:+95483661 MsG0780041815.01.T01:CDS
AGGATGTTCTTCAAATTCAA+AGG 0.518491 7:+95482680 MsG0780041815.01.T01:CDS
AGGGTGGAGCCGTTTCGTTA+AGG 0.519476 7:+95482956 MsG0780041815.01.T01:CDS
TTTCAGGGATCCGTGGTGCA+AGG 0.522724 7:+95483488 MsG0780041815.01.T01:CDS
CAAGTGGAGCCCACAGATGT+GGG 0.523088 7:+95482561 MsG0780041815.01.T01:CDS
TGATTGGGAGGAAGATAGAA+AGG 0.523415 7:-95483149 None:intergenic
CGTAATTAGGATTAGGAAGG+TGG 0.524111 7:-95483232 None:intergenic
AGAGCATATGTTTGACAAAG+TGG 0.524409 7:+95482746 MsG0780041815.01.T01:CDS
GAGGAGGAGGAGGATATTGA+GGG 0.524733 7:-95483118 None:intergenic
AGGATGAGATATTGTAGAAG+GGG 0.527536 7:-95483258 None:intergenic
AAATTGTTGTTGTAATATTG+AGG 0.530975 7:-95483278 None:intergenic
TTAGGAAGGTGGGAATATTG+AGG 0.532113 7:-95483221 None:intergenic
GAGACTATTTGGGGTTAACA+TGG 0.535206 7:+95483622 MsG0780041815.01.T01:CDS
GATATGATCTTCAGTGGTGC+CGG 0.535398 7:-95483805 None:intergenic
ATGGAGTTAAGACTTGGAGG+AGG 0.540445 7:+95482618 MsG0780041815.01.T01:CDS
GGAGTTAAGACTTGGAGGAG+GGG 0.544084 7:+95482620 MsG0780041815.01.T01:CDS
TTCAGGGATCCGTGGTGCAA+GGG 0.545428 7:+95483489 MsG0780041815.01.T01:CDS
CGTTGGTAGAAGAATCCAAA+GGG 0.545569 7:-95482836 None:intergenic
ACAAGTGGAGCCCACAGATG+TGG 0.549700 7:+95482560 MsG0780041815.01.T01:CDS
GGAGGAGGCAGTAGCAGCAG+TGG 0.549918 7:+95482710 MsG0780041815.01.T01:CDS
GAGGATATTGAGGGATGAGG+TGG 0.549967 7:-95483109 None:intergenic
TTCAAATTCAAAGGATGAGG+AGG 0.550070 7:+95482689 MsG0780041815.01.T01:CDS
TGTACATAGATTGGAGGCCA+AGG 0.550302 7:+95483048 MsG0780041815.01.T01:CDS
CCCAGAAGTTGTTGTAGAAG+AGG 0.550466 7:-95483711 None:intergenic
AAATTCAAAGGATGAGGAGG+AGG 0.551226 7:+95482692 MsG0780041815.01.T01:CDS
CACTATTCATCATATGGTGG+TGG 0.562154 7:+95483173 MsG0780041815.01.T01:CDS
TTCAGCTTCCCTACGTCACT+AGG 0.562859 7:-95482774 None:intergenic
AGAGTTATGTGATGACAAAA+GGG 0.563519 7:+95482937 MsG0780041815.01.T01:CDS
GATCATGATCATCATCACAT+AGG 0.564701 7:+95483734 MsG0780041815.01.T01:CDS
GAGGAGGATATTGAGGGATG+AGG 0.567145 7:-95483112 None:intergenic
TTAACAAGGTGATCAGCAGC+AGG 0.575298 7:-95483362 None:intergenic
TGTGCAATTCAGCACGTCCA+CGG 0.575558 7:-95483016 None:intergenic
CCAGAAGTTGTTGTAGAAGA+GGG 0.577780 7:-95483710 None:intergenic
AATCAATTATCATATTCATA+GGG 0.579857 7:-95483541 None:intergenic
GAGTACTGAGAGTGTGCCCT+TGG 0.581237 7:-95483065 None:intergenic
CTTCTAATTCCCAATATCGC+CGG 0.581436 7:+95483786 MsG0780041815.01.T01:CDS
TTAGGCATTGCCGCCTGTGG+TGG 0.586107 7:-95483674 None:intergenic
ATCGAAATGGTAAGATGTGG+AGG 0.587159 7:+95482886 MsG0780041815.01.T01:CDS
CACACCACCACCAGCTGTGG+TGG 0.589837 7:-95483456 None:intergenic
CACCACAGCTGGTGGTGGTG+TGG 0.591127 7:+95483457 MsG0780041815.01.T01:CDS
GGTGATCAGCAGCAGGAGCA+GGG 0.594253 7:-95483355 None:intergenic
AAGGAGAAGAAACTTGATGC+TGG 0.595535 7:+95482975 MsG0780041815.01.T01:CDS
AAGATCGAAATGGTAAGATG+TGG 0.599172 7:+95482883 MsG0780041815.01.T01:CDS
ATCCACACCACCACCAGCTG+TGG 0.603339 7:-95483459 None:intergenic
ACAGATTGTACATAGATTGG+AGG 0.603584 7:+95483042 MsG0780041815.01.T01:CDS
TAGTATTAACATTGCCTCCG+CGG 0.604612 7:-95483586 None:intergenic
TAGGAGAAGCCCTTTCTCGT+TGG 0.605407 7:-95482853 None:intergenic
CGATTAGGCATTGCCGCCTG+TGG 0.607948 7:-95483677 None:intergenic
CCATCAACCACCACAGCTGG+TGG 0.608577 7:+95483449 MsG0780041815.01.T01:CDS
CCAGCTGTGGTGGTTGATGG+TGG 0.616460 7:-95483446 None:intergenic
CTCTTCTACAACAACTTCTG+GGG 0.618726 7:+95483712 MsG0780041815.01.T01:CDS
TGGTGACACCTAGTGACGTA+GGG 0.621412 7:+95482766 MsG0780041815.01.T01:CDS
AAGAGCAAGGGCAATGACGA+AGG 0.626355 7:+95482648 MsG0780041815.01.T01:CDS
CATCACTATTCATCATATGG+TGG 0.627152 7:+95483170 MsG0780041815.01.T01:CDS
GTAATTAGGATTAGGAAGGT+GGG 0.627827 7:-95483231 None:intergenic
GAAGTTGTTGTAGAAGAGGG+TGG 0.628343 7:-95483707 None:intergenic
TCAACCACCACAGCTGGTGG+TGG 0.631467 7:+95483452 MsG0780041815.01.T01:CDS
TTCTTCAGCACCACCACAGG+CGG 0.633356 7:+95483664 MsG0780041815.01.T01:CDS
GGTTGGGAAGTTGAATGAAG+AGG 0.633662 7:+95482584 MsG0780041815.01.T01:CDS
AAAACGACTGAGACTATTTG+GGG 0.634135 7:+95483613 MsG0780041815.01.T01:CDS
GTGGTGACACCTAGTGACGT+AGG 0.638503 7:+95482765 MsG0780041815.01.T01:CDS
AAGTGGAGCCCACAGATGTG+GGG 0.638886 7:+95482562 MsG0780041815.01.T01:CDS
GATGAATAGTGATGATTGGG+AGG 0.640962 7:-95483161 None:intergenic
GAGGAGGTGAGATAATAGAG+GGG 0.642836 7:-95483413 None:intergenic
TGATGGTGGCGTAATTGGCG+AGG 0.643835 7:-95483432 None:intergenic
CAGCGTAATTAGGATTAGGA+AGG 0.653855 7:-95483235 None:intergenic
AGTGGAGCCCACAGATGTGG+GGG 0.657513 7:+95482563 MsG0780041815.01.T01:CDS
AAGGTGGGAATATTGAGGGG+AGG 0.661936 7:-95483216 None:intergenic
CATGATCATCATCACATAGG+GGG 0.662369 7:+95483737 MsG0780041815.01.T01:CDS
GTACATAGATTGGAGGCCAA+GGG 0.664207 7:+95483049 MsG0780041815.01.T01:CDS
GGAGGCAATGTTAATACTAG+CGG 0.665755 7:+95483590 MsG0780041815.01.T01:CDS
GTTATGTGATGACAAAAGGG+TGG 0.673333 7:+95482940 MsG0780041815.01.T01:CDS
TTGTTGATGCCCTTGCACCA+CGG 0.680815 7:-95483498 None:intergenic
TCGTTGGTAGAAGAATCCAA+AGG 0.680986 7:-95482837 None:intergenic
TCATGATCATCATCACATAG+GGG 0.698827 7:+95483736 MsG0780041815.01.T01:CDS
GTTGCACATCATCACCGCGG+AGG 0.703943 7:+95483572 MsG0780041815.01.T01:CDS
GATCAGCAGCAGGAGCAGGG+TGG 0.705208 7:-95483352 None:intergenic
AGGAAGGTGGGAATATTGAG+GGG 0.714015 7:-95483219 None:intergenic
TGGTGGCGTAATTGGCGAGG+AGG 0.722964 7:-95483429 None:intergenic
GCAATTCAGCACGTCCACGG+TGG 0.740263 7:-95483013 None:intergenic
CCAGTTGCACATCATCACCG+CGG 0.781500 7:+95483569 MsG0780041815.01.T01:CDS
GACATTGTATCATTCCACCG+TGG 0.786574 7:+95482999 MsG0780041815.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTATTATTATTATTAACA+AGG - Chr7:95483379-95483398 None:intergenic 10.0%
!! AATCAATTATCATATTCATA+GGG - Chr7:95483544-95483563 None:intergenic 15.0%
!! GAAATTTACTTGTAAATGTT+TGG + Chr7:95482536-95482555 MsG0780041815.01.T01:CDS 20.0%
!! GAATCAATTATCATATTCAT+AGG - Chr7:95483545-95483564 None:intergenic 20.0%
!!! AAATTGTTGTTGTAATATTG+AGG - Chr7:95483281-95483300 None:intergenic 20.0%
! AATCATCACTATTCATCATA+TGG + Chr7:95483167-95483186 MsG0780041815.01.T01:CDS 25.0%
! ATATGATGAATAGTGATGAT+TGG - Chr7:95483168-95483187 None:intergenic 25.0%
! CATTTCGATCTTCAAAATTT+AGG - Chr7:95482875-95482894 None:intergenic 25.0%
! TATGATGAATAGTGATGATT+GGG - Chr7:95483167-95483186 None:intergenic 25.0%
!!! CTAAATTTTGAAGATCGAAA+TGG + Chr7:95482873-95482892 MsG0780041815.01.T01:CDS 25.0%
AGAGTTATGTGATGACAAAA+GGG + Chr7:95482937-95482956 MsG0780041815.01.T01:CDS 30.0%
AGGATGTTCTTCAAATTCAA+AGG + Chr7:95482680-95482699 MsG0780041815.01.T01:CDS 30.0%
ATCATGATCATCATCACATA+GGG + Chr7:95483735-95483754 MsG0780041815.01.T01:CDS 30.0%
TTCTTCAAATTCAAAGGATG+AGG + Chr7:95482686-95482705 MsG0780041815.01.T01:CDS 30.0%
TTGTAAATGTTTGGTACAAG+TGG + Chr7:95482545-95482564 MsG0780041815.01.T01:CDS 30.0%
AAAACGACTGAGACTATTTG+GGG + Chr7:95483613-95483632 MsG0780041815.01.T01:CDS 35.0%
AAGATCGAAATGGTAAGATG+TGG + Chr7:95482883-95482902 MsG0780041815.01.T01:CDS 35.0%
AATGACGAAGGATTAGGAAT+AGG + Chr7:95482660-95482679 MsG0780041815.01.T01:CDS 35.0%
ACAGATTGTACATAGATTGG+AGG + Chr7:95483042-95483061 MsG0780041815.01.T01:CDS 35.0%
AGAGCATATGTTTGACAAAG+TGG + Chr7:95482746-95482765 MsG0780041815.01.T01:CDS 35.0%
AGGATGAGATATTGTAGAAG+GGG - Chr7:95483261-95483280 None:intergenic 35.0%
ATTCTTCTACCAACGAGAAA+GGG + Chr7:95482844-95482863 MsG0780041815.01.T01:CDS 35.0%
CAGAGTTATGTGATGACAAA+AGG + Chr7:95482936-95482955 MsG0780041815.01.T01:CDS 35.0%
CATCACTATTCATCATATGG+TGG + Chr7:95483170-95483189 MsG0780041815.01.T01:CDS 35.0%
GAAAACGACTGAGACTATTT+GGG + Chr7:95483612-95483631 MsG0780041815.01.T01:CDS 35.0%
GACACAGATTGTACATAGAT+TGG + Chr7:95483039-95483058 MsG0780041815.01.T01:CDS 35.0%
GAGGATGAGATATTGTAGAA+GGG - Chr7:95483262-95483281 None:intergenic 35.0%
GATCATGATCATCATCACAT+AGG + Chr7:95483734-95483753 MsG0780041815.01.T01:CDS 35.0%
GATTTGATGGAGTTAAGACT+TGG + Chr7:95482612-95482631 MsG0780041815.01.T01:CDS 35.0%
GTAATTAGGATTAGGAAGGT+GGG - Chr7:95483234-95483253 None:intergenic 35.0%
GTTTCTTCTCCTTAACGAAA+CGG - Chr7:95482968-95482987 None:intergenic 35.0%
TCATGATCATCATCACATAG+GGG + Chr7:95483736-95483755 MsG0780041815.01.T01:CDS 35.0%
TGAAGAGGAGATAGATTTGA+TGG + Chr7:95482599-95482618 MsG0780041815.01.T01:CDS 35.0%
TGAGGATGAGATATTGTAGA+AGG - Chr7:95483263-95483282 None:intergenic 35.0%
TTCAAATTCAAAGGATGAGG+AGG + Chr7:95482689-95482708 MsG0780041815.01.T01:CDS 35.0%
! CTTTTGTCATCACATAACTC+TGG - Chr7:95482938-95482957 None:intergenic 35.0%
AAATTCAAAGGATGAGGAGG+AGG + Chr7:95482692-95482711 MsG0780041815.01.T01:CDS 40.0%
AACTTCGCTGCACTTTGATT+TGG + Chr7:95483760-95483779 MsG0780041815.01.T01:CDS 40.0%
AAGGAGAAGAAACTTGATGC+TGG + Chr7:95482975-95482994 MsG0780041815.01.T01:CDS 40.0%
ATCGAAATGGTAAGATGTGG+AGG + Chr7:95482886-95482905 MsG0780041815.01.T01:CDS 40.0%
CACTATTCATCATATGGTGG+TGG + Chr7:95483173-95483192 MsG0780041815.01.T01:CDS 40.0%
CAGCGTAATTAGGATTAGGA+AGG - Chr7:95483238-95483257 None:intergenic 40.0%
CATGATCATCATCACATAGG+GGG + Chr7:95483737-95483756 MsG0780041815.01.T01:CDS 40.0%
CCAGAAGTTGTTGTAGAAGA+GGG - Chr7:95483713-95483732 None:intergenic 40.0%
CCTCTTCTACAACAACTTCT+GGG + Chr7:95483711-95483730 MsG0780041815.01.T01:CDS 40.0%
CGTAATTAGGATTAGGAAGG+TGG - Chr7:95483235-95483254 None:intergenic 40.0%
CTCTTCTACAACAACTTCTG+GGG + Chr7:95483712-95483731 MsG0780041815.01.T01:CDS 40.0%
CTTCTAATTCCCAATATCGC+CGG + Chr7:95483786-95483805 MsG0780041815.01.T01:CDS 40.0%
GATGAATAGTGATGATTGGG+AGG - Chr7:95483164-95483183 None:intergenic 40.0%
GATTCTTCTACCAACGAGAA+AGG + Chr7:95482843-95482862 MsG0780041815.01.T01:CDS 40.0%
GGAAAACGACTGAGACTATT+TGG + Chr7:95483611-95483630 MsG0780041815.01.T01:CDS 40.0%
GGAGGCAATGTTAATACTAG+CGG + Chr7:95483590-95483609 MsG0780041815.01.T01:CDS 40.0%
GGAGGTTCAGGTATTCATAT+TGG + Chr7:95482904-95482923 MsG0780041815.01.T01:CDS 40.0%
GTTATGTGATGACAAAAGGG+TGG + Chr7:95482940-95482959 MsG0780041815.01.T01:CDS 40.0%
TAGGAAGGTGGGAATATTGA+GGG - Chr7:95483223-95483242 None:intergenic 40.0%
TAGTATTAACATTGCCTCCG+CGG - Chr7:95483589-95483608 None:intergenic 40.0%
TGATTGGGAGGAAGATAGAA+AGG - Chr7:95483152-95483171 None:intergenic 40.0%
TTAGGAAGGTGGGAATATTG+AGG - Chr7:95483224-95483243 None:intergenic 40.0%
TTGATGGAGTTAAGACTTGG+AGG + Chr7:95482615-95482634 MsG0780041815.01.T01:CDS 40.0%
! CGTTGGTAGAAGAATCCAAA+GGG - Chr7:95482839-95482858 None:intergenic 40.0%
! GAGACTATTTGGGGTTAACA+TGG + Chr7:95483622-95483641 MsG0780041815.01.T01:CDS 40.0%
! GGTGTGGATCAACATTTTCA+GGG + Chr7:95483473-95483492 MsG0780041815.01.T01:CDS 40.0%
! TCGTTGGTAGAAGAATCCAA+AGG - Chr7:95482840-95482859 None:intergenic 40.0%
! TGGTGTGGATCAACATTTTC+AGG + Chr7:95483472-95483491 MsG0780041815.01.T01:CDS 40.0%
AAGGGCAATGACGAAGGATT+AGG + Chr7:95482654-95482673 MsG0780041815.01.T01:CDS 45.0%
AGGAAGGTGGGAATATTGAG+GGG - Chr7:95483222-95483241 None:intergenic 45.0%
ATGGAGTTAAGACTTGGAGG+AGG + Chr7:95482618-95482637 MsG0780041815.01.T01:CDS 45.0%
ATGGTAAGATGTGGAGGTTC+AGG + Chr7:95482892-95482911 MsG0780041815.01.T01:CDS 45.0%
CCCAGAAGTTGTTGTAGAAG+AGG - Chr7:95483714-95483733 None:intergenic 45.0%
CCCTCTTCTACAACAACTTC+TGG + Chr7:95483710-95483729 MsG0780041815.01.T01:CDS 45.0%
CGAGGAGGTGAGATAATAGA+GGG - Chr7:95483417-95483436 None:intergenic 45.0%
CGGCGATATTGGGAATTAGA+AGG - Chr7:95483788-95483807 None:intergenic 45.0%
GAAGTTGTTGTAGAAGAGGG+TGG - Chr7:95483710-95483729 None:intergenic 45.0%
GACATTGTATCATTCCACCG+TGG + Chr7:95482999-95483018 MsG0780041815.01.T01:CDS 45.0%
GAGGAGGTGAGATAATAGAG+GGG - Chr7:95483416-95483435 None:intergenic 45.0%
GGTTGGGAAGTTGAATGAAG+AGG + Chr7:95482584-95482603 MsG0780041815.01.T01:CDS 45.0%
GTACATAGATTGGAGGCCAA+GGG + Chr7:95483049-95483068 MsG0780041815.01.T01:CDS 45.0%
TGGAGTTAAGACTTGGAGGA+GGG + Chr7:95482619-95482638 MsG0780041815.01.T01:CDS 45.0%
TGTACATAGATTGGAGGCCA+AGG + Chr7:95483048-95483067 MsG0780041815.01.T01:CDS 45.0%
TTAACAAGGTGATCAGCAGC+AGG - Chr7:95483365-95483384 None:intergenic 45.0%
!! TCAACATTTTCAGGGATCCG+TGG + Chr7:95483481-95483500 MsG0780041815.01.T01:CDS 45.0%
AAGAGCAAGGGCAATGACGA+AGG + Chr7:95482648-95482667 MsG0780041815.01.T01:CDS 50.0%
AAGGTGGGAATATTGAGGGG+AGG - Chr7:95483219-95483238 None:intergenic 50.0%
AGATAGAAAGGCAGTGGAGG+AGG - Chr7:95483140-95483159 None:intergenic 50.0%
GAGGAGGAGGAGGATATTGA+GGG - Chr7:95483121-95483140 None:intergenic 50.0%
GAGGAGGATATTGAGGGATG+AGG - Chr7:95483115-95483134 None:intergenic 50.0%
GAGGATATTGAGGGATGAGG+TGG - Chr7:95483112-95483131 None:intergenic 50.0%
GAGGGTGGAAGTTGACGATT+AGG - Chr7:95483695-95483714 None:intergenic 50.0%
GAGTTAAGACTTGGAGGAGG+GGG + Chr7:95482621-95482640 MsG0780041815.01.T01:CDS 50.0%
GATATTGAGGGATGAGGTGG+TGG - Chr7:95483109-95483128 None:intergenic 50.0%
GCGAGGAGGTGAGATAATAG+AGG - Chr7:95483418-95483437 None:intergenic 50.0%
GGAAGATAGAAAGGCAGTGG+AGG - Chr7:95483143-95483162 None:intergenic 50.0%
GGAGGAAGATAGAAAGGCAG+TGG - Chr7:95483146-95483165 None:intergenic 50.0%
GGAGTTAAGACTTGGAGGAG+GGG + Chr7:95482620-95482639 MsG0780041815.01.T01:CDS 50.0%
GGGGCAGCGTAATTAGGATT+AGG - Chr7:95483242-95483261 None:intergenic 50.0%
GTAGAAGGGGCAGCGTAATT+AGG - Chr7:95483248-95483267 None:intergenic 50.0%
TAGGAGAAGCCCTTTCTCGT+TGG - Chr7:95482856-95482875 None:intergenic 50.0%
TGGTGACACCTAGTGACGTA+GGG + Chr7:95482766-95482785 MsG0780041815.01.T01:CDS 50.0%
TGTGCAATTCAGCACGTCCA+CGG - Chr7:95483019-95483038 None:intergenic 50.0%
TTCAAAGGATGAGGAGGAGG+AGG + Chr7:95482695-95482714 MsG0780041815.01.T01:CDS 50.0%
TTCAGCTTCCCTACGTCACT+AGG - Chr7:95482777-95482796 None:intergenic 50.0%
TTCTTCTTCAGCACCACCAC+AGG + Chr7:95483661-95483680 MsG0780041815.01.T01:CDS 50.0%
TTGTTGATGCCCTTGCACCA+CGG - Chr7:95483501-95483520 None:intergenic 50.0%
!! CGCAGAGAAGTACTTCCCTT+TGG + Chr7:95482821-95482840 MsG0780041815.01.T01:CDS 50.0%
!! GTGGTTGATGGTGGCGTAAT+TGG - Chr7:95483440-95483459 None:intergenic 50.0%
!! TACTTCTCTGCGTGCTGCTT+TGG - Chr7:95482813-95482832 None:intergenic 50.0%
AAGTGGAGCCCACAGATGTG+GGG + Chr7:95482562-95482581 MsG0780041815.01.T01:CDS 55.0%
ACAAGTGGAGCCCACAGATG+TGG + Chr7:95482560-95482579 MsG0780041815.01.T01:CDS 55.0%
AGGGTGGAGCCGTTTCGTTA+AGG + Chr7:95482956-95482975 MsG0780041815.01.T01:CDS 55.0%
CAAGTGGAGCCCACAGATGT+GGG + Chr7:95482561-95482580 MsG0780041815.01.T01:CDS 55.0%
CCAGTTGCACATCATCACCG+CGG + Chr7:95483569-95483588 MsG0780041815.01.T01:CDS 55.0%
GGAGGAGGAGGAGGATATTG+AGG - Chr7:95483122-95483141 None:intergenic 55.0%
GTGGTGACACCTAGTGACGT+AGG + Chr7:95482765-95482784 MsG0780041815.01.T01:CDS 55.0%
TAGAAAGGCAGTGGAGGAGG+AGG - Chr7:95483137-95483156 None:intergenic 55.0%
TTCAGGGATCCGTGGTGCAA+GGG + Chr7:95483489-95483508 MsG0780041815.01.T01:CDS 55.0%
TTCCCAACCCCCACATCTGT+GGG - Chr7:95482573-95482592 None:intergenic 55.0%
TTCTTCAGCACCACCACAGG+CGG + Chr7:95483664-95483683 MsG0780041815.01.T01:CDS 55.0%
TTTCAGGGATCCGTGGTGCA+AGG + Chr7:95483488-95483507 MsG0780041815.01.T01:CDS 55.0%
!! GAGTACTGAGAGTGTGCCCT+TGG - Chr7:95483068-95483087 None:intergenic 55.0%
!! TCAGTGGTGCCGGCGATATT+GGG - Chr7:95483798-95483817 None:intergenic 55.0%
!! TGATGGTGGCGTAATTGGCG+AGG - Chr7:95483435-95483454 None:intergenic 55.0%
AAAGGCAGTGGAGGAGGAGG+AGG - Chr7:95483134-95483153 None:intergenic 60.0%
AGCCCACAGATGTGGGGGTT+GGG + Chr7:95482568-95482587 MsG0780041815.01.T01:CDS 60.0%
AGGAGGGGGAAGCAAGAGCA+AGG + Chr7:95482635-95482654 MsG0780041815.01.T01:CDS 60.0%
AGGTGATCAGCAGCAGGAGC+AGG - Chr7:95483359-95483378 None:intergenic 60.0%
AGTGGAGCCCACAGATGTGG+GGG + Chr7:95482563-95482582 MsG0780041815.01.T01:CDS 60.0%
ATCCACACCACCACCAGCTG+TGG - Chr7:95483462-95483481 None:intergenic 60.0%
CCACCAGCTGTGGTGGTTGA+TGG - Chr7:95483452-95483471 None:intergenic 60.0%
CCACCATCAACCACCACAGC+TGG + Chr7:95483446-95483465 MsG0780041815.01.T01:CDS 60.0%
CCATCAACCACCACAGCTGG+TGG + Chr7:95483449-95483468 MsG0780041815.01.T01:CDS 60.0%
CTTCCCAACCCCCACATCTG+TGG - Chr7:95482574-95482593 None:intergenic 60.0%
GCAATTCAGCACGTCCACGG+TGG - Chr7:95483016-95483035 None:intergenic 60.0%
GGAGGGGGAAGCAAGAGCAA+GGG + Chr7:95482636-95482655 MsG0780041815.01.T01:CDS 60.0%
GGTGATCAGCAGCAGGAGCA+GGG - Chr7:95483358-95483377 None:intergenic 60.0%
GTTGCACATCATCACCGCGG+AGG + Chr7:95483572-95483591 MsG0780041815.01.T01:CDS 60.0%
TCAACCACCACAGCTGGTGG+TGG + Chr7:95483452-95483471 MsG0780041815.01.T01:CDS 60.0%
! CCGCGGTGATGATGTGCAAC+TGG - Chr7:95483572-95483591 None:intergenic 60.0%
! CGATTAGGCATTGCCGCCTG+TGG - Chr7:95483680-95483699 None:intergenic 60.0%
! TGGTGGCGTAATTGGCGAGG+AGG - Chr7:95483432-95483451 None:intergenic 60.0%
! TTAGGCATTGCCGCCTGTGG+TGG - Chr7:95483677-95483696 None:intergenic 60.0%
!! CCAGCTGTGGTGGTTGATGG+TGG - Chr7:95483449-95483468 None:intergenic 60.0%
CACACCACCACCAGCTGTGG+TGG - Chr7:95483459-95483478 None:intergenic 65.0%
GAGCCCACAGATGTGGGGGT+TGG + Chr7:95482567-95482586 MsG0780041815.01.T01:CDS 65.0%
GATCAGCAGCAGGAGCAGGG+TGG - Chr7:95483355-95483374 None:intergenic 65.0%
GGAGGAGGCAGTAGCAGCAG+TGG + Chr7:95482710-95482729 MsG0780041815.01.T01:CDS 65.0%
!! CACCACAGCTGGTGGTGGTG+TGG + Chr7:95483457-95483476 MsG0780041815.01.T01:CDS 65.0%
CAGCAGCAGGAGCAGGGTGG+TGG - Chr7:95483352-95483371 None:intergenic 70.0%
GGCAGTGGAGGAGGAGGAGG+AGG - Chr7:95483131-95483150 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 95482534 95483817 95482534 ID=MsG0780041815.01;Name=MsG0780041815.01
Chr7 mRNA 95482534 95483817 95482534 ID=MsG0780041815.01.T01;Parent=MsG0780041815.01;Name=MsG0780041815.01.T01;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|427
Chr7 exon 95482534 95483817 95482534 ID=MsG0780041815.01.T01:exon:21020;Parent=MsG0780041815.01.T01
Chr7 CDS 95482534 95483817 95482534 ID=MsG0780041815.01.T01:cds;Parent=MsG0780041815.01.T01
Gene Sequence

>MsG0780041815.01.T01

ATGAAATTTACTTGTAAATGTTTGGTACAAGTGGAGCCCACAGATGTGGGGGTTGGGAAGTTGAATGAAGAGGAGATAGATTTGATGGAGTTAAGACTTGGAGGAGGGGGAAGCAAGAGCAAGGGCAATGACGAAGGATTAGGAATAGGATGTTCTTCAAATTCAAAGGATGAGGAGGAGGAGGCAGTAGCAGCAGTGGTAGTAGTAGAGAAAGAGCATATGTTTGACAAAGTGGTGACACCTAGTGACGTAGGGAAGCTGAATAGACTTGTGATTCCAAAGCAGCACGCAGAGAAGTACTTCCCTTTGGATTCTTCTACCAACGAGAAAGGGCTTCTCCTAAATTTTGAAGATCGAAATGGTAAGATGTGGAGGTTCAGGTATTCATATTGGAACAGTAGCCAGAGTTATGTGATGACAAAAGGGTGGAGCCGTTTCGTTAAGGAGAAGAAACTTGATGCTGGTGACATTGTATCATTCCACCGTGGACGTGCTGAATTGCACAGACACAGATTGTACATAGATTGGAGGCCAAGGGCACACTCTCAGTACTCTCATCATCATCATCATCACCACCACCTCATCCCTCAATATCCTCCTCCTCCTCCTCCACTGCCTTTCTATCTTCCTCCCAATCATCACTATTCATCATATGGTGGTGGTACTGCTAGATCATTATACACCTCCCCTCAATATTCCCACCTTCCTAATCCTAATTACGCTGCCCCTTCTACAATATCTCATCCTCAATATTACAACAACAATTTCTATACTACTACTACTACACTTCATCAACAACAACAACAACAACAGTACCACCACCCTGCTCCTGCTGCTGATCACCTTGTTAATAATAATAATAACAACAACAACATGAATCCCCTCTATTATCTCACCTCCTCGCCAATTACGCCACCATCAACCACCACAGCTGGTGGTGGTGTGGATCAACATTTTCAGGGATCCGTGGTGCAAGGGCATCAACAAGATCAGAGAAATGTGAATGTCCCTATGAATATGATAATTGATTCAGTGCCAGTTGCACATCATCACCGCGGAGGCAATGTTAATACTAGCGGAAAACGACTGAGACTATTTGGGGTTAACATGGAATGTGATTCTTCTTCTTCTTCTTCAGCACCACCACAGGCGGCAATGCCTAATCGTCAACTTCCACCCTCTTCTACAACAACTTCTGGGGATCATGATCATCATCACATAGGGGGAACTTCGCTGCACTTTGATTTGGATCCTTCTAATTCCCAATATCGCCGGCACCACTGA
Protein sequence

>MsG0780041815.01.T01

MKFTCKCLVQVEPTDVGVGKLNEEEIDLMELRLGGGGSKSKGNDEGLGIGCSSNSKDEEEEAVAAVVVVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNEKGLLLNFEDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGRAELHRHRLYIDWRPRAHSQYSHHHHHHHHLIPQYPPPPPPLPFYLPPNHHYSSYGGGTARSLYTSPQYSHLPNPNYAAPSTISHPQYYNNNFYTTTTTLHQQQQQQQYHHPAPAADHLVNNNNNNNNMNPLYYLTSSPITPPSTTTAGGGVDQHFQGSVVQGHQQDQRNVNVPMNMIIDSVPVAHHHRGGNVNTSGKRLRLFGVNMECDSSSSSSAPPQAAMPNRQLPPSSTTTSGDHDHHHIGGTSLHFDLDPSNSQYRRHH*