AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042780.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042780.01.T01 MTR_8g022040 97.037 270 8 0 6 275 31 300 0.0 536
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042780.01.T01 AT3G14110 77.232 224 46 3 56 275 10 232 6.53e-123 350
MsG0880042780.01.T01 AT3G14110 77.232 224 46 3 56 275 95 317 5.54e-121 348
MsG0880042780.01.T01 AT3G14110 77.232 224 46 3 56 275 94 316 6.24e-121 348

Find 74 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAGATCAACGCAGCTTTA+AGG 0.162554 8:-13948975 MsG0880042780.01.T01:CDS
GAAATTAGCTCCTGCTTCTT+TGG 0.194376 8:+13948862 None:intergenic
TCTGGGAGCACAGAAGCTTT+TGG 0.282801 8:-13948224 MsG0880042780.01.T01:CDS
TTATAACTCTAAAATGAAAT+TGG 0.294948 8:+13947885 None:intergenic
TGATAATGTATAACTTTGTT+TGG 0.302234 8:+13947839 None:intergenic
CTCTATGCCTTGTAAAGCTT+TGG 0.314092 8:-13949626 MsG0880042780.01.T01:CDS
AATGGTTGTAGTATCATCTA+TGG 0.315818 8:-13947864 MsG0880042780.01.T01:three_prime_UTR
AAATTAGCTCCTGCTTCTTT+GGG 0.320693 8:+13948863 None:intergenic
TTGGACTTGTTGAATGAATC+AGG 0.344074 8:-13950332 MsG0880042780.01.T01:CDS
TCCTTAAAGCTGCGTTGATC+TGG 0.349806 8:+13948974 None:intergenic
CGAGCTTGCACAGAATATTA+AGG 0.353747 8:-13948764 MsG0880042780.01.T01:CDS
TCTAATATAAACTCTCAATA+AGG 0.373926 8:+13947998 None:intergenic
AATTGGTCCATGGAAGATAT+TGG 0.400129 8:-13947908 MsG0880042780.01.T01:three_prime_UTR
GTTATCCGCCTCACATGTTT+CGG 0.433071 8:+13949603 None:intergenic
AACTCCGTGAACGCTCTATC+CGG 0.434021 8:+13948799 None:intergenic
CACTTGTCTTTCTTTAAAAG+TGG 0.436649 8:-13950303 MsG0880042780.01.T01:CDS
GAAAGAGAAGGAGAAGACTC+TGG 0.438780 8:-13948242 MsG0880042780.01.T01:CDS
TTCTCCTTCTCTTTCAGAGA+TGG 0.442375 8:+13948250 None:intergenic
TATTATTGAGACTGTAAAGT+TGG 0.455556 8:-13948028 MsG0880042780.01.T01:three_prime_UTR
CTGCTGGCAGTAGCCCTCAT+TGG 0.456121 8:-13949559 MsG0880042780.01.T01:CDS
AGGGCTACTGCCAGCAGTAT+AGG 0.468089 8:+13949565 None:intergenic
ACTTTGAGTTATGCTCCCAT+TGG 0.484515 8:-13948922 MsG0880042780.01.T01:CDS
CTAATCCTCACTCTCATGTT+CGG 0.493211 8:-13948114 MsG0880042780.01.T01:exon
TATTGTTGACCCAAAGAAGC+AGG 0.494085 8:-13948872 MsG0880042780.01.T01:CDS
TTGAGTTATGCTCCCATTGG+TGG 0.494886 8:-13948919 MsG0880042780.01.T01:CDS
CGGTTGGAATTTCAGAAGAC+AGG 0.495709 8:+13950246 None:intergenic
GTATATTGCAAGGTTGGAAA+AGG 0.495847 8:-13948138 MsG0880042780.01.T01:CDS
GCTTCACTGCTCAAACTGTA+AGG 0.496267 8:-13950222 MsG0880042780.01.T01:intron
GCTGATTGTTACACTGAGCT+TGG 0.497045 8:-13948194 MsG0880042780.01.T01:CDS
TGACAAGTATATTGCAAGGT+TGG 0.497877 8:-13948144 MsG0880042780.01.T01:CDS
GTTTCGGCCAAAGCTTTACA+AGG 0.498723 8:+13949619 None:intergenic
CTTGGAGACCTTGAGAAAGC+AGG 0.512469 8:-13948176 MsG0880042780.01.T01:CDS
GTTCAATATGCCTATACTGC+TGG 0.514867 8:-13949575 MsG0880042780.01.T01:CDS
AGTATTGCCCTGCTTTCTCA+AGG 0.519335 8:+13948168 None:intergenic
TGCAAAGACAAGGAAAGTAC+CGG 0.523115 8:-13948304 MsG0880042780.01.T01:CDS
TTTGAGCAGTGAAGCACGGT+TGG 0.527472 8:+13950230 None:intergenic
TATGTTCAATCTCTAGTATG+TGG 0.531315 8:-13947967 MsG0880042780.01.T01:three_prime_UTR
TGCTGTTAAATACCATTCGA+TGG 0.538453 8:-13948279 MsG0880042780.01.T01:CDS
AGCTATTCTACCACCACCAA+TGG 0.541352 8:+13948906 None:intergenic
GCTATTCTACCACCACCAAT+GGG 0.549162 8:+13948907 None:intergenic
AAATTGGCCAATATCTTCCA+TGG 0.550480 8:+13947901 None:intergenic
GAGAATACAAAATTGGTCCA+TGG 0.552762 8:-13947918 MsG0880042780.01.T01:three_prime_UTR
GCAGCCGGATAGAGCGTTCA+CGG 0.555380 8:-13948803 MsG0880042780.01.T01:CDS
GAATATTAAGGATCCTATTG+AGG 0.559537 8:-13948752 MsG0880042780.01.T01:CDS
AAAGAGAAGGAGAAGACTCT+GGG 0.564267 8:-13948241 MsG0880042780.01.T01:CDS
ATAACTCAAAGTGGGAGCAT+AGG 0.567196 8:+13948933 None:intergenic
TCGCAAGAAACGGCAGCGAA+TGG 0.569309 8:+13949665 None:intergenic
AGTTATGCTCCCATTGGTGG+TGG 0.570022 8:-13948916 MsG0880042780.01.T01:CDS
TTGTCCATCTCTGAAAGAGA+AGG 0.581064 8:-13948254 MsG0880042780.01.T01:CDS
GCCCTCATTGGAGCCACTGT+GGG 0.584271 8:-13949547 MsG0880042780.01.T01:CDS
TCTAGTATGTGGAATGAATG+AGG 0.586657 8:-13947956 MsG0880042780.01.T01:three_prime_UTR
TTGGAGACCTTGAGAAAGCA+GGG 0.586734 8:-13948175 MsG0880042780.01.T01:CDS
CTCCCACAGTGGCTCCAATG+AGG 0.591943 8:+13949545 None:intergenic
CAGTGATACTCACATGAGGT+TGG 0.594428 8:-13950351 None:intergenic
TCAAAAGTATCTTTCAAGAG+TGG 0.597289 8:+13950269 None:intergenic
TCCCACAGTGGCTCCAATGA+GGG 0.606337 8:+13949546 None:intergenic
CTCATTGGAGCCACTGTGGG+AGG 0.607784 8:-13949544 MsG0880042780.01.T01:intron
TAGGGTTGGTCGCGAGACAA+AGG 0.608850 8:-13949032 MsG0880042780.01.T01:CDS
ACAGTTTGAGCAGTGAAGCA+CGG 0.611538 8:+13950226 None:intergenic
TCTTTCTTTAAAAGTGGACA+AGG 0.621291 8:-13950297 MsG0880042780.01.T01:CDS
AATGGGAGCATAACTCAAAG+TGG 0.622075 8:+13948924 None:intergenic
AAATGCCGAACATGAGAGTG+AGG 0.630583 8:+13948109 None:intergenic
AGATGGACAAAACCATCGAA+TGG 0.633017 8:+13948267 None:intergenic
AGCCCTCATTGGAGCCACTG+TGG 0.646086 8:-13949548 MsG0880042780.01.T01:CDS
GCAAAGACAAGGAAAGTACC+GGG 0.648002 8:-13948303 MsG0880042780.01.T01:CDS
AGCTTTGGCCGAAACATGTG+AGG 0.648289 8:-13949611 MsG0880042780.01.T01:CDS
ACTATGACAAGTATATTGCA+AGG 0.654467 8:-13948148 MsG0880042780.01.T01:CDS
ATGGGAGCATAACTCAAAGT+GGG 0.655825 8:+13948925 None:intergenic
AATGGTATTTAACAGCATCC+CGG 0.658102 8:+13948285 None:intergenic
GGAGCTTCATTGCAAAGACA+AGG 0.665921 8:-13948314 MsG0880042780.01.T01:CDS
TTTGGCCGAAACATGTGAGG+CGG 0.674674 8:-13949608 MsG0880042780.01.T01:CDS
TTGGTCGCGAGACAAAGGAA+AGG 0.686385 8:-13949027 MsG0880042780.01.T01:CDS
AAAGGAAAGGAGAATTACAG+CGG 0.729898 8:-13949014 MsG0880042780.01.T01:CDS
TAGTACCTTACCTCCCACAG+TGG 0.794975 8:+13949534 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACTCTTAAATTTTTATTA+CGG - Chr8:13948326-13948345 MsG0880042780.01.T01:intron 10.0%
!! AAAACAGCTTATATAAAAAA+TGG + Chr8:13949661-13949680 None:intergenic 15.0%
!! AAAATATGCAAATATTCTTA+AGG + Chr8:13949825-13949844 None:intergenic 15.0%
!!! ATTTCATTTTAGAGTTATAA+TGG - Chr8:13950285-13950304 MsG0880042780.01.T01:CDS 15.0%
!!! ATTTGCATATTTTATATTAC+AGG - Chr8:13949832-13949851 MsG0880042780.01.T01:intron 15.0%
!!! ATTTTACTTGTTGATTTAAT+TGG - Chr8:13948759-13948778 MsG0880042780.01.T01:CDS 15.0%
!!! CATTTTATTTGTACTTTTTA+TGG - Chr8:13949071-13949090 MsG0880042780.01.T01:intron 15.0%
!!! TTATAACTCTAAAATGAAAT+TGG + Chr8:13950285-13950304 None:intergenic 15.0%
!! ACAATCATTTATGAAGATAT+TGG + Chr8:13948406-13948425 None:intergenic 20.0%
!! ACAATTAAAGATTATAGTGA+CGG + Chr8:13948098-13948117 None:intergenic 20.0%
!! TCTAATATAAACTCTCAATA+AGG + Chr8:13950172-13950191 None:intergenic 20.0%
!! TTGTGATTTATGATTGAAAA+TGG - Chr8:13948447-13948466 MsG0880042780.01.T01:intron 20.0%
!!! ATCTTCATAAATGATTGTTT+TGG - Chr8:13948408-13948427 MsG0880042780.01.T01:intron 20.0%
!!! GTTTTAAGAGAATACAAAAT+TGG - Chr8:13950242-13950261 MsG0880042780.01.T01:CDS 20.0%
!!! TGATAATGTATAACTTTGTT+TGG + Chr8:13950331-13950350 None:intergenic 20.0%
! AAACACTTGTCAAACTATTT+GGG + Chr8:13949763-13949782 None:intergenic 25.0%
! AACTTAACTACTAAACACAT+TGG + Chr8:13948920-13948939 None:intergenic 25.0%
! ACTTAACTACTAAACACATT+GGG + Chr8:13948919-13948938 None:intergenic 25.0%
! AGACTAAAACTTCATTTAGT+CGG - Chr8:13948714-13948733 MsG0880042780.01.T01:intron 25.0%
! AGTTTGACAAGTGTTTATAT+TGG - Chr8:13949767-13949786 MsG0880042780.01.T01:intron 25.0%
! CTAATTTCGAAGTTAAAAAG+TGG - Chr8:13949320-13949339 MsG0880042780.01.T01:intron 25.0%
! CTGAATTTATTGATCTGATA+GGG - Chr8:13949117-13949136 MsG0880042780.01.T01:intron 25.0%
! TAAACACTTGTCAAACTATT+TGG + Chr8:13949764-13949783 None:intergenic 25.0%
! TATTATTGAGACTGTAAAGT+TGG - Chr8:13950139-13950158 MsG0880042780.01.T01:intron 25.0%
!! AAACTATATTGGAGAGTATA+TGG - Chr8:13949684-13949703 MsG0880042780.01.T01:CDS 25.0%
!! AAAGTGGAAAGAATTTTCTA+AGG - Chr8:13949336-13949355 MsG0880042780.01.T01:intron 25.0%
!! ATTTGAGTAAACACTCATTT+TGG - Chr8:13948053-13948072 MsG0880042780.01.T01:three_prime_UTR 25.0%
!! TTCATCGGTTGTATTAATAT+AGG - Chr8:13948782-13948801 MsG0880042780.01.T01:CDS 25.0%
!!! AGTAATTTTTCAGTGAAATG+AGG - Chr8:13948020-13948039 MsG0880042780.01.T01:three_prime_UTR 25.0%
!!! TGTTGATTTAATTGGTTCAT+CGG - Chr8:13948767-13948786 MsG0880042780.01.T01:CDS 25.0%
AAAAAATTGCTCGCAAGAAA+CGG + Chr8:13948515-13948534 None:intergenic 30.0%
AATAAGCTGAAAACAGCTAA+TGG - Chr8:13949708-13949727 MsG0880042780.01.T01:intron 30.0%
AATGGTTGTAGTATCATCTA+TGG - Chr8:13950303-13950322 MsG0880042780.01.T01:CDS 30.0%
ACAAACGAAATACACATTTG+AGG + Chr8:13948172-13948191 None:intergenic 30.0%
ACACATCGATAAGCAAAATA+AGG + Chr8:13949477-13949496 None:intergenic 30.0%
ACTATGACAAGTATATTGCA+AGG - Chr8:13950019-13950038 MsG0880042780.01.T01:intron 30.0%
AGTCCATGAAATTACTATCA+GGG - Chr8:13948230-13948249 MsG0880042780.01.T01:CDS 30.0%
ATTTATTGATCTGATAGGGT+TGG - Chr8:13949121-13949140 MsG0880042780.01.T01:intron 30.0%
CCTATCAGATCAATAAATTC+AGG + Chr8:13949119-13949138 None:intergenic 30.0%
CCTGAATTTATTGATCTGAT+AGG - Chr8:13949116-13949135 MsG0880042780.01.T01:intron 30.0%
GAATATTAAGGATCCTATTG+AGG - Chr8:13949415-13949434 MsG0880042780.01.T01:intron 30.0%
GTATCTTTCTTTACTGAGTT+TGG - Chr8:13948145-13948164 MsG0880042780.01.T01:CDS 30.0%
TAGTCCATGAAATTACTATC+AGG - Chr8:13948229-13948248 MsG0880042780.01.T01:CDS 30.0%
TATGTTCAATCTCTAGTATG+TGG - Chr8:13950200-13950219 MsG0880042780.01.T01:intron 30.0%
! AAGTCTAATGTTGATTGTGT+AGG + Chr8:13949515-13949534 None:intergenic 30.0%
! AGTTAAGATATTTTGCTACG+TGG - Chr8:13948873-13948892 MsG0880042780.01.T01:CDS 30.0%
! CAAAGCAGGATTTTAGATAA+GGG + Chr8:13948353-13948372 None:intergenic 30.0%
! CACTTGTCTTTCTTTAAAAG+TGG - Chr8:13947864-13947883 MsG0880042780.01.T01:three_prime_UTR 30.0%
! TCTTTCTTTAAAAGTGGACA+AGG - Chr8:13947870-13947889 MsG0880042780.01.T01:three_prime_UTR 30.0%
!! TCAAAAGTATCTTTCAAGAG+TGG + Chr8:13947901-13947920 None:intergenic 30.0%
!!! AGTTTTAGTCTTAAAGCACT+TGG + Chr8:13948705-13948724 None:intergenic 30.0%
!!! GTTTTAGTCTTAAAGCACTT+GGG + Chr8:13948704-13948723 None:intergenic 30.0%
AAAGGAAAGGAGAATTACAG+CGG - Chr8:13949153-13949172 MsG0880042780.01.T01:intron 35.0%
AAATTAGCTCCTGCTTCTTT+GGG + Chr8:13949307-13949326 None:intergenic 35.0%
AAATTGGCCAATATCTTCCA+TGG + Chr8:13950269-13950288 None:intergenic 35.0%
AATGGTATTTAACAGCATCC+CGG + Chr8:13949885-13949904 None:intergenic 35.0%
AATTGGTCCATGGAAGATAT+TGG - Chr8:13950259-13950278 MsG0880042780.01.T01:CDS 35.0%
CATCCCTGATAGTAATTTCA+TGG + Chr8:13948236-13948255 None:intergenic 35.0%
GAGAATACAAAATTGGTCCA+TGG - Chr8:13950249-13950268 MsG0880042780.01.T01:CDS 35.0%
GTATATTGCAAGGTTGGAAA+AGG - Chr8:13950029-13950048 MsG0880042780.01.T01:intron 35.0%
TAAACACATTGGGCTTTCAA+AGG + Chr8:13948909-13948928 None:intergenic 35.0%
TCCTATTGAGGAGAAAAAAG+CGG - Chr8:13949427-13949446 MsG0880042780.01.T01:intron 35.0%
TCTAGTATGTGGAATGAATG+AGG - Chr8:13950211-13950230 MsG0880042780.01.T01:intron 35.0%
TGACAAGTATATTGCAAGGT+TGG - Chr8:13950023-13950042 MsG0880042780.01.T01:intron 35.0%
TGCTGTTAAATACCATTCGA+TGG - Chr8:13949888-13949907 MsG0880042780.01.T01:intron 35.0%
TTGAAAATGGTTGCCTTATC+AGG - Chr8:13948460-13948479 MsG0880042780.01.T01:intron 35.0%
! ATCGATGTGTGTTTTCTTGA+AGG - Chr8:13949487-13949506 MsG0880042780.01.T01:intron 35.0%
! CCAAAGCAGGATTTTAGATA+AGG + Chr8:13948354-13948373 None:intergenic 35.0%
! CCTGTGCTTTTACTAAAATG+TGG - Chr8:13949042-13949061 MsG0880042780.01.T01:intron 35.0%
! CCTTATCTAAAATCCTGCTT+TGG - Chr8:13948351-13948370 MsG0880042780.01.T01:intron 35.0%
!! AAGTTCACAAGAGGCATTTA+AGG - Chr8:13949557-13949576 MsG0880042780.01.T01:CDS 35.0%
!! CAGTTGATAATTTCCAAAGC+AGG + Chr8:13948367-13948386 None:intergenic 35.0%
!! CCACATTTTAGTAAAAGCAC+AGG + Chr8:13949045-13949064 None:intergenic 35.0%
!! GCTGTTTTCGCAAACTATAT+TGG - Chr8:13949673-13949692 MsG0880042780.01.T01:CDS 35.0%
!! TTGGACTTGTTGAATGAATC+AGG - Chr8:13947835-13947854 MsG0880042780.01.T01:three_prime_UTR 35.0%
AAAGAGAAGGAGAAGACTCT+GGG - Chr8:13949926-13949945 MsG0880042780.01.T01:intron 40.0%
AAAGCAACAGAAACATGCGT+TGG - Chr8:13948976-13948995 MsG0880042780.01.T01:CDS 40.0%
AGATGGACAAAACCATCGAA+TGG + Chr8:13949903-13949922 None:intergenic 40.0%
CGAGCTTGCACAGAATATTA+AGG - Chr8:13949403-13949422 MsG0880042780.01.T01:intron 40.0%
CTAATCCTCACTCTCATGTT+CGG - Chr8:13950053-13950072 MsG0880042780.01.T01:intron 40.0%
CTCTATGCCTTGTAAAGCTT+TGG - Chr8:13948541-13948560 MsG0880042780.01.T01:intron 40.0%
GAAATTAGCTCCTGCTTCTT+TGG + Chr8:13949308-13949327 None:intergenic 40.0%
GTTCAATATGCCTATACTGC+TGG - Chr8:13948592-13948611 MsG0880042780.01.T01:intron 40.0%
TATTGTTGACCCAAAGAAGC+AGG - Chr8:13949295-13949314 MsG0880042780.01.T01:intron 40.0%
TGAGTGAAGAAGTTCACAAG+AGG - Chr8:13949548-13949567 MsG0880042780.01.T01:CDS 40.0%
TTCTCCTTCTCTTTCAGAGA+TGG + Chr8:13949920-13949939 None:intergenic 40.0%
TTTGGCATGTCATCCTGATA+AGG + Chr8:13948476-13948495 None:intergenic 40.0%
! AATGGGAGCATAACTCAAAG+TGG + Chr8:13949246-13949265 None:intergenic 40.0%
! ACTTTGAGTTATGCTCCCAT+TGG - Chr8:13949245-13949264 MsG0880042780.01.T01:intron 40.0%
! AGGCATTTAAGGTCATAGTG+GGG - Chr8:13949568-13949587 MsG0880042780.01.T01:CDS 40.0%
! ATAACTCAAAGTGGGAGCAT+AGG + Chr8:13949237-13949256 None:intergenic 40.0%
! ATGGGAGCATAACTCAAAGT+GGG + Chr8:13949245-13949264 None:intergenic 40.0%
! GAGGCATTTAAGGTCATAGT+GGG - Chr8:13949567-13949586 MsG0880042780.01.T01:CDS 40.0%
! TGCAAAGACAAGGAAAGTAC+CGG - Chr8:13949863-13949882 MsG0880042780.01.T01:intron 40.0%
! TTGTCCATCTCTGAAAGAGA+AGG - Chr8:13949913-13949932 MsG0880042780.01.T01:intron 40.0%
!! AGAGGCATTTAAGGTCATAG+TGG - Chr8:13949566-13949585 MsG0880042780.01.T01:CDS 40.0%
!! TTTTCTAAGGAATCAGCAGC+CGG - Chr8:13949349-13949368 MsG0880042780.01.T01:intron 40.0%
AAATGCCGAACATGAGAGTG+AGG + Chr8:13950061-13950080 None:intergenic 45.0%
ACAGTTTGAGCAGTGAAGCA+CGG + Chr8:13947944-13947963 None:intergenic 45.0%
AGCTATTCTACCACCACCAA+TGG + Chr8:13949264-13949283 None:intergenic 45.0%
AGTATTGCCCTGCTTTCTCA+AGG + Chr8:13950002-13950021 None:intergenic 45.0%
CGGTTGGAATTTCAGAAGAC+AGG + Chr8:13947924-13947943 None:intergenic 45.0%
GAAAGAGAAGGAGAAGACTC+TGG - Chr8:13949925-13949944 MsG0880042780.01.T01:intron 45.0%
GCTATTCTACCACCACCAAT+GGG + Chr8:13949263-13949282 None:intergenic 45.0%
GCTGATTGTTACACTGAGCT+TGG - Chr8:13949973-13949992 MsG0880042780.01.T01:intron 45.0%
GCTTCACTGCTCAAACTGTA+AGG - Chr8:13947945-13947964 MsG0880042780.01.T01:three_prime_UTR 45.0%
GGAGCTTCATTGCAAAGACA+AGG - Chr8:13949853-13949872 MsG0880042780.01.T01:intron 45.0%
GTTATCCGCCTCACATGTTT+CGG + Chr8:13948567-13948586 None:intergenic 45.0%
GTTTCGGCCAAAGCTTTACA+AGG + Chr8:13948551-13948570 None:intergenic 45.0%
TCCAGATCAACGCAGCTTTA+AGG - Chr8:13949192-13949211 MsG0880042780.01.T01:intron 45.0%
TGAGGAGAAAAAAGCGGCTA+GGG - Chr8:13949433-13949452 MsG0880042780.01.T01:intron 45.0%
TTGAGGAGAAAAAAGCGGCT+AGG - Chr8:13949432-13949451 MsG0880042780.01.T01:intron 45.0%
TTGAGTTATGCTCCCATTGG+TGG - Chr8:13949248-13949267 MsG0880042780.01.T01:intron 45.0%
TTGGAGACCTTGAGAAAGCA+GGG - Chr8:13949992-13950011 MsG0880042780.01.T01:intron 45.0%
! ATTTTCGTCCCTAATGTGCG+AGG + Chr8:13948300-13948319 None:intergenic 45.0%
! GGCAGCGAATGGAATCTTTT+TGG + Chr8:13948494-13948513 None:intergenic 45.0%
! TCCTTAAAGCTGCGTTGATC+TGG + Chr8:13949196-13949215 None:intergenic 45.0%
!! GCAAAGACAAGGAAAGTACC+GGG - Chr8:13949864-13949883 MsG0880042780.01.T01:intron 45.0%
!!! GCCGCTTTTTTCTCCTCAAT+AGG + Chr8:13949431-13949450 None:intergenic 45.0%
AAAAAAGCGGCTAGGGGTCT+AGG - Chr8:13949440-13949459 MsG0880042780.01.T01:intron 50.0%
AACTCCGTGAACGCTCTATC+CGG + Chr8:13949371-13949390 None:intergenic 50.0%
AGTTATGCTCCCATTGGTGG+TGG - Chr8:13949251-13949270 MsG0880042780.01.T01:intron 50.0%
CTTGGAGACCTTGAGAAAGC+AGG - Chr8:13949991-13950010 MsG0880042780.01.T01:intron 50.0%
GAGGAGAAAAAAGCGGCTAG+GGG - Chr8:13949434-13949453 MsG0880042780.01.T01:intron 50.0%
TAGTACCTTACCTCCCACAG+TGG + Chr8:13948636-13948655 None:intergenic 50.0%
TGACACTGCCTCGCACATTA+GGG - Chr8:13948289-13948308 MsG0880042780.01.T01:CDS 50.0%
TTGGTCGCGAGACAAAGGAA+AGG - Chr8:13949140-13949159 MsG0880042780.01.T01:intron 50.0%
TTTGAGCAGTGAAGCACGGT+TGG + Chr8:13947940-13947959 None:intergenic 50.0%
TTTGGCCGAAACATGTGAGG+CGG - Chr8:13948559-13948578 MsG0880042780.01.T01:intron 50.0%
! AGCTTTGGCCGAAACATGTG+AGG - Chr8:13948556-13948575 MsG0880042780.01.T01:intron 50.0%
!! CTGGGAGCACAGAAGCTTTT+GGG - Chr8:13949944-13949963 MsG0880042780.01.T01:intron 50.0%
!! TCTGGGAGCACAGAAGCTTT+TGG - Chr8:13949943-13949962 MsG0880042780.01.T01:intron 50.0%
!! TGGGAGCACAGAAGCTTTTG+GGG - Chr8:13949945-13949964 MsG0880042780.01.T01:intron 50.0%
AGGGCTACTGCCAGCAGTAT+AGG + Chr8:13948605-13948624 None:intergenic 55.0%
GTGACACTGCCTCGCACATT+AGG - Chr8:13948288-13948307 MsG0880042780.01.T01:CDS 55.0%
TCCCACAGTGGCTCCAATGA+GGG + Chr8:13948624-13948643 None:intergenic 55.0%
TCGCAAGAAACGGCAGCGAA+TGG + Chr8:13948505-13948524 None:intergenic 55.0%
!! TAGGGTTGGTCGCGAGACAA+AGG - Chr8:13949135-13949154 MsG0880042780.01.T01:intron 55.0%
AGCCCTCATTGGAGCCACTG+TGG - Chr8:13948619-13948638 MsG0880042780.01.T01:intron 60.0%
CTCATTGGAGCCACTGTGGG+AGG - Chr8:13948623-13948642 MsG0880042780.01.T01:intron 60.0%
CTCCCACAGTGGCTCCAATG+AGG + Chr8:13948625-13948644 None:intergenic 60.0%
CTGCTGGCAGTAGCCCTCAT+TGG - Chr8:13948608-13948627 MsG0880042780.01.T01:intron 60.0%
GCCCTCATTGGAGCCACTGT+GGG - Chr8:13948620-13948639 MsG0880042780.01.T01:intron 60.0%
TGGAGCCACTGTGGGAGGTA+AGG - Chr8:13948628-13948647 MsG0880042780.01.T01:intron 60.0%
! GCAGCCGGATAGAGCGTTCA+CGG - Chr8:13949364-13949383 MsG0880042780.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 13947829 13950360 13947829 ID=MsG0880042780.01;Name=MsG0880042780.01
Chr8 mRNA 13947829 13950360 13947829 ID=MsG0880042780.01.T01;Parent=MsG0880042780.01;Name=MsG0880042780.01.T01;_AED=0.38;_eAED=0.38;_QI=0|1|0.75|1|1|1|4|304|275
Chr8 exon 13947829 13948335 13947829 ID=MsG0880042780.01.T01:exon:13432;Parent=MsG0880042780.01.T01
Chr8 exon 13948728 13949051 13948728 ID=MsG0880042780.01.T01:exon:13431;Parent=MsG0880042780.01.T01
Chr8 exon 13949545 13949707 13949545 ID=MsG0880042780.01.T01:exon:13430;Parent=MsG0880042780.01.T01
Chr8 exon 13950223 13950360 13950223 ID=MsG0880042780.01.T01:exon:13429;Parent=MsG0880042780.01.T01
Chr8 CDS 13950223 13950360 13950223 ID=MsG0880042780.01.T01:cds;Parent=MsG0880042780.01.T01
Chr8 CDS 13949545 13949707 13949545 ID=MsG0880042780.01.T01:cds;Parent=MsG0880042780.01.T01
Chr8 CDS 13948728 13949051 13948728 ID=MsG0880042780.01.T01:cds;Parent=MsG0880042780.01.T01
Chr8 CDS 13948133 13948335 13948133 ID=MsG0880042780.01.T01:cds;Parent=MsG0880042780.01.T01
Chr8 three_prime_UTR 13947829 13948132 13947829 ID=MsG0880042780.01.T01:three_prime_utr;Parent=MsG0880042780.01.T01
Gene Sequence

>MsG0880042780.01.T01

ATGAGGTTGGACTTGTTGAATGAATCAGGAAAATTCACTTGTCTTTCTTTAAAAGTGGACAAGGTTGTGCCACTCTTGAAAGATACTTTTGACCTGTCTTCTGAAATTCCAACCGTGCTTCACTGCTCAAACTGTAAGGATGACATGCCAAAAAGATTCCATTCGCTGCCGTTTCTTGCGAGCAATTTTTTGATGTTCTCTATGCCTTGTAAAGCTTTGGCCGAAACATGTGAGGCGGATAACTCTATGTTCAATATGCCTATACTGCTGGCAGTAGCCCTCATTGGAGCCACTGTGGGAGGGTTGGTCGCGAGACAAAGGAAAGGAGAATTACAGCGGTTAAATGAGCAATTACTCCAGATCAACGCAGCTTTAAGGAAGCAAGCGAAAATCGAGTCCTATGCTCCCACTTTGAGTTATGCTCCCATTGGTGGTGGTAGAATAGCTGAGAGTGAGATTATTGTTGACCCAAAGAAGCAGGAGCTAATTTCGAAGTTAAAAAGTGGAAAGAATTTTCTAAGGAATCAGCAGCCGGATAGAGCGTTCACGGAGTTTAAGATTGCGCTCGAGCTTGCACAGAATATTAAGGATCCTATTGAGGAGAAAAAAGCGGCTAGGGGTCTAGGAGCTTCATTGCAAAGACAAGGAAAGTACCGGGATGCTGTTAAATACCATTCGATGGTTTTGTCCATCTCTGAAAGAGAAGGAGAAGACTCTGGGAGCACAGAAGCTTTTGGGGCAATTGCTGATTGTTACACTGAGCTTGGAGACCTTGAGAAAGCAGGGCAATACTATGACAAGTATATTGCAAGGTTGGAAAAGGACTAA
Protein sequence

>MsG0880042780.01.T01

MRLDLLNESGKFTCLSLKVDKVVPLLKDTFDLSSEIPTVLHCSNCKDDMPKRFHSLPFLASNFLMFSMPCKALAETCEADNSMFNMPILLAVALIGATVGGLVARQRKGELQRLNEQLLQINAALRKQAKIESYAPTLSYAPIGGGRIAESEIIVDPKKQELISKLKSGKNFLRNQQPDRAFTEFKIALELAQNIKDPIEEKKAARGLGASLQRQGKYRDAVKYHSMVLSISEREGEDSGSTEAFGAIADCYTELGDLEKAGQYYDKYIARLEKD*