AlfalfaGEDB | MsG0780041480.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041480.01

KEGG: -
GO: GO:0005509 GO:0009523 GO:0009654 GO:0015979 GO:0019898
PFAM: PF01789

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041480.01.T01	XP_013450440.1	96	250	9	1	1	249	1	250	2.84E-168	474

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041480.01.T01	O23403	64.659	249	76	5	10	247	40	287	4.17E-104	306

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041480.01.T01	A0A072U5R2	96.000	250	9	1	1	249	1	250	1.36e-168	474

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047910.01	MsG0780041480.01	0.843588	1.277531e-58	2.008438e-55
MsG0080047945.01	MsG0780041480.01	0.877263	7.231218e-69	3.613231e-65
MsG0080047955.01	MsG0780041480.01	0.903224	4.325872e-79	6.343226e-75
MsG0080047956.01	MsG0780041480.01	0.890766	7.321255e-74	6.242870e-70
MsG0080048059.01	MsG0780041480.01	0.821034	5.004274e-53	4.026129e-50
MsG0080048068.01	MsG0780041480.01	0.814448	1.532478e-51	1.028569e-48
MsG0080048528.01	MsG0780041480.01	0.827820	1.266247e-54	1.236051e-51
MsG0080048611.01	MsG0780041480.01	0.812658	3.794467e-51	2.426605e-48
MsG0080048776.01	MsG0780041480.01	0.836211	1.068530e-56	1.337665e-53
MsG0080048777.01	MsG0780041480.01	0.886889	2.307289e-72	1.678356e-68

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041480.01.T01	MTR_7g111880	96.000	250	9	1	1	249	1	250	3.44e-172	474

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041480.01.T01	AT4G15510	64.659	249	76	5	10	247	40	287	4.25e-105	306
MsG0780041480.01.T01	AT4G15510	73.039	204	52	2	46	247	3	205	2.10e-103	298
MsG0780041480.01.T01	AT4G15510	73.039	204	52	2	46	247	3	205	2.10e-103	298
MsG0780041480.01.T01	AT4G15510	73.039	204	52	2	46	247	3	205	2.10e-103	298
MsG0780041480.01.T01	AT4G15510	69.595	148	40	3	35	178	72	218	1.73e-62	196

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Find 70 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGCACCACCCTATCTTG+TGG	0.644066	7:+91421635	None:intergenic
AAATGGAGCAGCGAGGGGAA+TGG	0.491691	7:+91422427	None:intergenic
ACAAGATAGGGTGGTGCGTT+TGG	0.360551	7:-91421633	MsG0780041480.01.T01:CDS
ACATATTCACGAAACACACG+AGG	0.719885	7:+91422194	None:intergenic
ACCCGTTGTTGTGATTGTAT+TGG	0.491544	7:+91422482	None:intergenic
ACGTTTAACACCAAGCCTAG+TGG	0.600812	7:+91421950	None:intergenic
ACTCACACAGCAAAGGCAAA+TGG	0.481060	7:+91422519	None:intergenic
ACTGCTACCATCATTAACAA+CGG	0.699682	7:+91421378	None:intergenic
ACTTACATTCTCTCCGACAT+TGG	0.478283	7:-91422236	MsG0780041480.01.T01:CDS
ACTTTCTTCCCAGCTTGTTG+AGG	0.564235	7:+91422002	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTTACGGTAATTTGAG+GGG	-	Chr7:91421865-91421884	MsG0780041480.01.T01:intron	30.0%
AGAAAATGTGTTTCAAGAAG+AGG	-	Chr7:91422134-91422153	MsG0780041480.01.T01:CDS	30.0%
CAAAACTTACGGTAATTTGA+GGG	-	Chr7:91421864-91421883	MsG0780041480.01.T01:intron	30.0%
CATTCAACTATCCATCAAAT+TGG	-	Chr7:91421520-91421539	MsG0780041480.01.T01:CDS	30.0%
CTTACTTGAATCCAATTTGA+TGG	+	Chr7:91421534-91421553	None:intergenic	30.0%
GAATTCACATGATGCTAATA+CGG	+	Chr7:91422529-91422548	None:intergenic	30.0%
GGTCAAAGATCATATGAATA+CGG	+	Chr7:91422554-91422573	None:intergenic	30.0%
TAGAAGAAAGAAGAACAATG+CGG	+	Chr7:91421121-91421140	None:intergenic	30.0%
TCAAATTGGATTCAAGTAAG+AGG	-	Chr7:91421534-91421553	MsG0780041480.01.T01:CDS	30.0%
ACTGCTACCATCATTAACAA+CGG	+	Chr7:91422296-91422315	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	91421120	91422573	91421120	ID=MsG0780041480.01;Name=MsG0780041480.01
Chr7	mRNA	91421120	91422573	91421120	ID=MsG0780041480.01.T01;Parent=MsG0780041480.01;Name=MsG0780041480.01.T01;_AED=0.23;_eAED=0.23;_QI=65\|1\|1\|1\|1\|1\|3\|361\|249
Chr7	exon	91421120	91421702	91421120	ID=MsG0780041480.01.T01:exon:18735;Parent=MsG0780041480.01.T01
Chr7	exon	91421884	91422312	91421884	ID=MsG0780041480.01.T01:exon:18734;Parent=MsG0780041480.01.T01
Chr7	exon	91422410	91422573	91422410	ID=MsG0780041480.01.T01:exon:18733;Parent=MsG0780041480.01.T01
Chr7	five_prime_UTR	91422509	91422573	91422509	ID=MsG0780041480.01.T01:five_prime_utr;Parent=MsG0780041480.01.T01
Chr7	CDS	91422410	91422508	91422410	ID=MsG0780041480.01.T01:cds;Parent=MsG0780041480.01.T01
Chr7	CDS	91421884	91422312	91421884	ID=MsG0780041480.01.T01:cds;Parent=MsG0780041480.01.T01
Chr7	CDS	91421481	91421702	91421481	ID=MsG0780041480.01.T01:cds;Parent=MsG0780041480.01.T01
Chr7	three_prime_UTR	91421120	91421480	91421120	ID=MsG0780041480.01.T01:three_prime_utr;Parent=MsG0780041480.01.T01

Gene Sequence

>MsG0780041480.01.T01

ATGGCCAATACAATCACAACAACGGGTTTTCTAGCCCGACCCATGTCACCATTTCACTTCCATTCCCCTCGCTGCTCCATTTCTCCCACACCCAATTCGATTAAAGCAGCTTTTGCAGTTCCTAGAAGAAAAGCAATGTCATTAATCTTATCAACTTACATTCTCTCCGACATTGGTACAGCATTAGCACAACAACCTCGTGTGTTTCGTGAATATGTTGATACATTTGATGGTTATTCATTCAACTATCCATCAAATTGGATTCAAGTAAGAGGTGCTGGTGCTGATATTTTCTTCAGGGATCCTTATATTCTTGATGAAAATATATCGGTCGAAGTTTCTTCGCCTTCTTCTTCGAAATTCAAGACTGTTCAAGACTTGGGTTCGCCTCAACAAGCTGGGAAGAAAGTTCTTGATCAGTATCTTACTGAGTTTATGTCCACTAGGCTTGGTGTTAAACGTGAATCTAATATTCTTTCCACCTCTGAGAGAGTTGCTGATGATGGCAAATTGTACTATCAAGTTGAGGCGAACATTAAGTCATATGCTAGTAACAACGAGCTTGCTGTTATGCCACAAGATAGGGTGGTGCGTTTGGAATGGGATAGGAGGTACCTGTCTGTTCTAGGAGTTGAAAACAACCAACTGTATGAGTTGAGATTACAAGTGCCAGAAAATGTGTTTCAAGAAGAGGAGAGTGAACTTCGTCAAGTCATGGCTTCGTTTCGAGCAAATAAGGTTGTTCGTTAG

Protein sequence

>MsG0780041480.01.T01

MANTITTTGFLARPMSPFHFHSPRCSISPTPNSIKAAFAVPRRKAMSLILSTYILSDIGTALAQQPRVFREYVDTFDGYSFNYPSNWIQVRGAGADIFFRDPYILDENISVEVSSPSSSKFKTVQDLGSPQQAGKKVLDQYLTEFMSTRLGVKRESNILSTSERVADDGKLYYQVEANIKSYASNNELAVMPQDRVVRLEWDRRYLSVLGVENNQLYELRLQVPENVFQEEESELRQVMASFRANKVVR*