AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043213.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043213.01.T01 MTR_8g031470 95.536 336 15 0 1 336 163 498 0.0 679
MsG0880043213.01.T01 MTR_8g031470 84.821 336 14 1 1 336 163 461 0.0 584
MsG0880043213.01.T01 MTR_8g031450 81.250 336 61 2 1 336 182 515 0.0 580
MsG0880043213.01.T01 MTR_5g010500 63.636 330 113 2 2 331 178 500 1.55e-159 456
MsG0880043213.01.T01 MTR_0014s0440 60.961 333 127 3 2 333 164 494 3.82e-152 437
MsG0880043213.01.T01 MTR_0014s0440 60.961 333 127 3 2 333 175 505 4.22e-152 437
MsG0880043213.01.T01 MTR_8g031290 57.276 323 135 3 1 322 168 488 1.32e-136 397
MsG0880043213.01.T01 MTR_7g076860 57.426 303 126 3 1 302 96 396 3.41e-129 375
MsG0880043213.01.T01 MTR_7g076890 54.785 303 133 3 1 302 127 426 5.09e-125 365
MsG0880043213.01.T01 MTR_3g464000 46.333 300 151 6 2 300 175 465 8.45e-92 282
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043213.01.T01 AT2G45830 66.061 330 109 3 2 330 47 374 3.33e-162 458
MsG0880043213.01.T01 AT2G45830 66.061 330 109 3 2 330 47 374 3.33e-162 458
MsG0880043213.01.T01 AT2G45830 66.061 330 109 3 2 330 47 374 3.33e-162 458
MsG0880043213.01.T01 AT2G45830 66.061 330 109 3 2 330 47 374 3.33e-162 458
MsG0880043213.01.T01 AT2G45830 66.061 330 109 3 2 330 188 515 5.93e-161 460
MsG0880043213.01.T01 AT2G45830 66.061 330 109 3 2 330 188 515 5.93e-161 460
MsG0880043213.01.T01 AT3G61270 64.848 330 114 2 2 331 47 374 2.91e-159 451
MsG0880043213.01.T01 AT3G61270 64.848 330 114 2 2 331 166 493 5.25e-158 452
MsG0880043213.01.T01 AT5G23850 61.377 334 126 3 2 334 208 539 7.94e-156 448
MsG0880043213.01.T01 AT3G48980 57.186 334 140 3 2 334 211 542 2.40e-146 424
MsG0880043213.01.T01 AT3G48980 57.186 334 140 3 2 334 205 536 3.73e-146 423
MsG0880043213.01.T01 AT1G63420 58.160 337 133 3 2 330 239 575 5.44e-139 406
MsG0880043213.01.T01 AT3G61280 52.083 336 158 1 1 333 199 534 4.60e-124 367
MsG0880043213.01.T01 AT3G61290 51.479 338 160 2 1 334 112 449 2.39e-121 357
MsG0880043213.01.T01 AT2G45840 51.327 339 154 4 1 334 187 519 1.26e-120 357
MsG0880043213.01.T01 AT1G07220 45.210 334 172 7 2 334 184 507 9.36e-98 298
MsG0880043213.01.T01 AT1G63420 61.644 219 79 2 2 215 239 457 6.29e-92 282
MsG0880043213.01.T01 AT3G61280 54.545 154 67 1 1 151 199 352 4.83e-51 174

Find 79 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATAATGCAGGTAGAAATT+TGG 0.165888 8:+20727325 MsG0880043213.01.T01:CDS
ATAGAGTACCTTATGCTTAT+TGG 0.187130 8:+20726064 MsG0880043213.01.T01:CDS
TCTTTCCAGATTGGTCCTTT+TGG 0.237147 8:+20724780 MsG0880043213.01.T01:CDS
CCCTGGCAAGTTGCCTGATT+TGG 0.297539 8:+20724640 MsG0880043213.01.T01:CDS
AATAATGCAGGTAGAAATTT+GGG 0.322510 8:+20727326 MsG0880043213.01.T01:CDS
CATTTACTATTGTCTCTAAT+AGG 0.329746 8:-20726801 None:intergenic
AAAGGAGGTGGTTTAGCATT+TGG 0.331324 8:-20724719 None:intergenic
TCTTAAATTTGCTGTGGAAT+GGG 0.339721 8:+20726830 MsG0880043213.01.T01:CDS
AGATAAGCCTGTTGTTCCTT+TGG 0.358733 8:+20724682 MsG0880043213.01.T01:CDS
CTACAATGCAATGTAACATT+AGG 0.370266 8:+20726126 MsG0880043213.01.T01:CDS
CTCTTAAATTTGCTGTGGAA+TGG 0.371549 8:+20726829 MsG0880043213.01.T01:CDS
TTAGATATTGTTCAGATCAA+TGG 0.371772 8:+20724744 MsG0880043213.01.T01:CDS
TAGATATTGTCTTTCCAGAT+TGG 0.382916 8:+20724771 MsG0880043213.01.T01:CDS
GTTCCTTTGGATAAGTTTCA+AGG 0.395754 8:+20724695 MsG0880043213.01.T01:CDS
TGCCTAGTTGGAGCAACATA+AGG 0.395852 8:-20726096 None:intergenic
TCTAAATCTAAAGGATCATA+TGG 0.408752 8:-20727276 None:intergenic
GGTTTCAACAAATCCAGCTT+AGG 0.416112 8:+20726290 MsG0880043213.01.T01:CDS
AAATTTGGGAAGATGAATAT+TGG 0.417589 8:+20727340 MsG0880043213.01.T01:CDS
TGGACTTTACATATAATGTC+AGG 0.423514 8:-20726728 None:intergenic
AACTTATCCAAAGGAACAAC+AGG 0.427577 8:-20724689 None:intergenic
TCCAAATCAGGCAACTTGCC+AGG 0.431840 8:-20724641 None:intergenic
ACAGCTCCTCTAGGTATAGT+TGG 0.445298 8:-20727135 None:intergenic
AGTACATTGGTCCCCTAAGC+TGG 0.445968 8:-20726303 None:intergenic
TCAAACATAAGTTCCAAATC+AGG 0.446282 8:-20724653 None:intergenic
ATCCTTAAAGACATAAAAGA+AGG 0.461536 8:+20726018 MsG0880043213.01.T01:CDS
TGGTAACAAAAGGAGGTTCA+TGG 0.463575 8:+20727200 MsG0880043213.01.T01:CDS
GCCTAGTTGGAGCAACATAA+GGG 0.464514 8:-20726095 None:intergenic
TTAATGACATGTGATGTATT+AGG 0.469892 8:+20727177 MsG0880043213.01.T01:CDS
ATCTAACAGGCACAGTCAAT+AGG 0.470737 8:+20727009 MsG0880043213.01.T01:intron
GTTTCAACAAATCCAGCTTA+GGG 0.472969 8:+20726291 MsG0880043213.01.T01:CDS
ATGTAACATTAGGAAATGAT+TGG 0.473901 8:+20726136 MsG0880043213.01.T01:CDS
CATCCCCAAAAGGACCAATC+TGG 0.479726 8:-20724785 None:intergenic
TGGATACAAGAATCTATTCA+AGG 0.498724 8:+20726269 MsG0880043213.01.T01:CDS
ATGTATTAGGTGGTAACAAA+AGG 0.498930 8:+20727190 MsG0880043213.01.T01:CDS
GCACAGTCAATAGGAGAGGC+TGG 0.500817 8:+20727018 MsG0880043213.01.T01:CDS
GTACCTTATGCTTATTGGAA+GGG 0.503766 8:+20726069 MsG0880043213.01.T01:CDS
TACCTTATGCTTATTGGAAG+GGG 0.503930 8:+20726070 MsG0880043213.01.T01:CDS
TAGGGGACCAATGTACTCAT+AGG 0.514341 8:+20726309 MsG0880043213.01.T01:CDS
AAAAGCTAATTCAATAATGC+AGG 0.515286 8:+20727314 MsG0880043213.01.T01:CDS
TTCCCCTTCCAATAAGCATA+AGG 0.515441 8:-20726072 None:intergenic
GAGGTTCATGGAAGAGTCAA+TGG 0.516306 8:+20727212 MsG0880043213.01.T01:CDS
CTTAAATTTGCTGTGGAATG+GGG 0.516885 8:+20726831 MsG0880043213.01.T01:CDS
ATAGGCCAATGATGTTGTAA+TGG 0.519530 8:-20726783 None:intergenic
TGGTGCCATTACAACATCAT+TGG 0.522878 8:+20726778 MsG0880043213.01.T01:CDS
AGGTACAAGATATACATAGA+AGG 0.526786 8:+20726660 MsG0880043213.01.T01:intron
ACAAGATATACATAGAAGGA+TGG 0.528604 8:+20726664 MsG0880043213.01.T01:CDS
CAAATTTCCACAGCTCCTCT+AGG 0.531706 8:-20727144 None:intergenic
AGTACCTTATGCTTATTGGA+AGG 0.533255 8:+20726068 MsG0880043213.01.T01:CDS
GGGCAACAATCACACTCATA+AGG 0.533532 8:+20726851 MsG0880043213.01.T01:CDS
CACCTCTCTTAAATTTGCTG+TGG 0.534214 8:+20726824 MsG0880043213.01.T01:CDS
TATACATAGAAGGATGGGCT+TGG 0.537356 8:+20726670 MsG0880043213.01.T01:CDS
GAACACTCTCATATACATAC+AGG 0.538416 8:+20726158 MsG0880043213.01.T01:CDS
TCTTTAAGGATATTGTTCCA+TGG 0.556103 8:-20726006 None:intergenic
CAAGATATACATAGAAGGAT+GGG 0.562972 8:+20726665 MsG0880043213.01.T01:CDS
AACTATACCTAGAGGAGCTG+TGG 0.578398 8:+20727137 MsG0880043213.01.T01:CDS
TAGCACTTACCATCCCCAAA+AGG 0.580374 8:-20724795 None:intergenic
GGACCTTGAAACTTATCCAA+AGG 0.580670 8:-20724698 None:intergenic
TCTAAAGGATCATATGGAGG+AGG 0.587652 8:-20727270 None:intergenic
CCAAATCAGGCAACTTGCCA+GGG 0.588415 8:-20724640 None:intergenic
GGACTTTACATATAATGTCA+GGG 0.591187 8:-20726727 None:intergenic
CATGGAAGAGTCAATGGTGA+AGG 0.603386 8:+20727218 MsG0880043213.01.T01:CDS
TATGGAGGAGGAATAGTGCA+TGG 0.604369 8:-20727258 None:intergenic
ACCCTTATGTTGCTCCAACT+AGG 0.608204 8:+20726094 MsG0880043213.01.T01:CDS
CAGAGACAAATATAAAGCCA+TGG 0.611457 8:+20725989 MsG0880043213.01.T01:CDS
CAATATCTAAACAAAGGAGG+TGG 0.612934 8:-20724731 None:intergenic
TCCTTAAAGACATAAAAGAA+GGG 0.616142 8:+20726019 MsG0880043213.01.T01:CDS
TATTAGGTGGTAACAAAAGG+AGG 0.620574 8:+20727193 MsG0880043213.01.T01:CDS
TCCCCTACCTATGAGTACAT+TGG 0.625090 8:-20726316 None:intergenic
TCTGAACAATATCTAAACAA+AGG 0.632316 8:-20724737 None:intergenic
TGGTAGCAAATTCATACAAG+AGG 0.633461 8:+20727038 MsG0880043213.01.T01:CDS
TTCCACAGCAAATTTAAGAG+AGG 0.634434 8:-20726826 None:intergenic
CAATTATTGAGAATGTACCC+TGG 0.642475 8:+20724623 None:intergenic
TTTCAACAAATCCAGCTTAG+GGG 0.645368 8:+20726292 MsG0880043213.01.T01:CDS
GAACAATATCTAAACAAAGG+AGG 0.645713 8:-20724734 None:intergenic
AGGTACTCTATCCTTCCACT+TGG 0.660422 8:-20726052 None:intergenic
AAATCTAAAGGATCATATGG+AGG 0.667890 8:-20727273 None:intergenic
ACAGGCACAGTCAATAGGAG+AGG 0.670596 8:+20727014 MsG0880043213.01.T01:intron
TTCAAACCAACTATACCTAG+AGG 0.684725 8:+20727129 MsG0880043213.01.T01:CDS
ATGACATGTGATGTATTAGG+TGG 0.728891 8:+20727180 MsG0880043213.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAAAAATAAAAATT+AGG - Chr8:20725839-20725858 None:intergenic 0.0%
!! ATAAATAAAAATAAAAATTA+GGG - Chr8:20725838-20725857 None:intergenic 0.0%
!! ACTTTGATAAAAATATATAA+TGG - Chr8:20725589-20725608 None:intergenic 10.0%
!!! TTATATATTTTTATCAAAGT+TGG + Chr8:20725589-20725608 MsG0880043213.01.T01:intron 10.0%
!! AAAAATTCTTCTAAATCTAA+AGG - Chr8:20727288-20727307 None:intergenic 15.0%
!! AATATTCTTTACTTAAAACA+GGG + Chr8:20725966-20725985 MsG0880043213.01.T01:intron 15.0%
!! ATAAAAATAAAAATTAGGGT+CGG - Chr8:20725834-20725853 None:intergenic 15.0%
!! ATAATGTATAATATATGTAG+GGG + Chr8:20726439-20726458 MsG0880043213.01.T01:intron 15.0%
!! ATTGCAAATTTATATTATTC+AGG + Chr8:20725270-20725289 MsG0880043213.01.T01:intron 15.0%
!! GATAATGTATAATATATGTA+GGG + Chr8:20726438-20726457 MsG0880043213.01.T01:intron 15.0%
!! TAATATTCTTTACTTAAAAC+AGG + Chr8:20725965-20725984 MsG0880043213.01.T01:intron 15.0%
!! TCAAAGTAAAATAAAATCAT+AGG - Chr8:20726923-20726942 None:intergenic 15.0%
!! TTGATAAAAATATATAATGG+TGG - Chr8:20725586-20725605 None:intergenic 15.0%
!!! AGAAATTGAAAAGTTTTATA+AGG + Chr8:20725384-20725403 MsG0880043213.01.T01:intron 15.0%
!!! TAGATTTAGAAGAATTTTTA+GGG + Chr8:20727289-20727308 MsG0880043213.01.T01:CDS 15.0%
!!! TTAGATTTAGAAGAATTTTT+AGG + Chr8:20727288-20727307 MsG0880043213.01.T01:CDS 15.0%
!! AATGCAACAAAAAAAATTCA+TGG - Chr8:20726967-20726986 None:intergenic 20.0%
!! AGTTAGTGAAAAATACATTA+TGG + Chr8:20726695-20726714 MsG0880043213.01.T01:CDS 20.0%
!! GAAGTAGTATATAAATAGAA+AGG - Chr8:20724839-20724858 None:intergenic 20.0%
!! GGATAATGTATAATATATGT+AGG + Chr8:20726437-20726456 MsG0880043213.01.T01:intron 20.0%
!! TAGAAAAGCTTATAGAAAAT+AGG + Chr8:20724969-20724988 MsG0880043213.01.T01:intron 20.0%
!! TATGAAAAAATCATGGTAAT+TGG - Chr8:20726751-20726770 None:intergenic 20.0%
!!! ATTCCTTTGATGTTAATTTT+AGG - Chr8:20726216-20726235 None:intergenic 20.0%
!!! GATTTTATTTTACTTTGACT+TGG + Chr8:20726925-20726944 MsG0880043213.01.T01:intron 20.0%
! AAAAGCTAATTCAATAATGC+AGG + Chr8:20727314-20727333 MsG0880043213.01.T01:CDS 25.0%
! AAATTTGGGAAGATGAATAT+TGG + Chr8:20727340-20727359 MsG0880043213.01.T01:CDS 25.0%
! AACCATTAGAAATGATTTAG+AGG + Chr8:20725111-20725130 MsG0880043213.01.T01:intron 25.0%
! AATAATGCAGGTAGAAATTT+GGG + Chr8:20727326-20727345 MsG0880043213.01.T01:CDS 25.0%
! ATCCTTAAAGACATAAAAGA+AGG + Chr8:20726018-20726037 MsG0880043213.01.T01:CDS 25.0%
! ATGTAACATTAGGAAATGAT+TGG + Chr8:20726136-20726155 MsG0880043213.01.T01:CDS 25.0%
! ATTCCCTTAAAATATCTAAC+AGG + Chr8:20726996-20727015 MsG0880043213.01.T01:intron 25.0%
! CATTTACTATTGTCTCTAAT+AGG - Chr8:20726804-20726823 None:intergenic 25.0%
! TCCTTAAAGACATAAAAGAA+GGG + Chr8:20726019-20726038 MsG0880043213.01.T01:CDS 25.0%
! TCTAAATCTAAAGGATCATA+TGG - Chr8:20727279-20727298 None:intergenic 25.0%
! TCTCCTAAAATTAACATCAA+AGG + Chr8:20726210-20726229 MsG0880043213.01.T01:intron 25.0%
! TCTGAACAATATCTAAACAA+AGG - Chr8:20724740-20724759 None:intergenic 25.0%
! TTAATGACATGTGATGTATT+AGG + Chr8:20727177-20727196 MsG0880043213.01.T01:CDS 25.0%
! TTAGATATTGTTCAGATCAA+TGG + Chr8:20724744-20724763 MsG0880043213.01.T01:CDS 25.0%
! TTATAGAAAATAGGCTTAGA+TGG + Chr8:20724978-20724997 MsG0880043213.01.T01:intron 25.0%
!! AAGTCTTATCTCACTAAATA+GGG - Chr8:20725204-20725223 None:intergenic 25.0%
!! ACATAGTTCTATATTTAGAG+AGG - Chr8:20724861-20724880 None:intergenic 25.0%
!! GTTTATCTTACAGTTTTCTT+AGG - Chr8:20725094-20725113 None:intergenic 25.0%
!! TAGAATGATACATGTGATTT+TGG + Chr8:20726629-20726648 MsG0880043213.01.T01:intron 25.0%
!! TCACATGTCATTAATTTTTC+AGG - Chr8:20727171-20727190 None:intergenic 25.0%
!! TCTATAAGCTTTTCTACTAT+AGG - Chr8:20724965-20724984 None:intergenic 25.0%
!!! AAGTGTTGAATAATAGAAAG+GGG - Chr8:20725938-20725957 None:intergenic 25.0%
!!! AGAAGTGTTGAATAATAGAA+AGG - Chr8:20725940-20725959 None:intergenic 25.0%
!!! ATTGTGTATATTTTGATCAC+AGG + Chr8:20726244-20726263 MsG0880043213.01.T01:intron 25.0%
!!! GAAAAGTTTTATAAGGAGAA+TGG + Chr8:20725391-20725410 MsG0880043213.01.T01:intron 25.0%
!!! GAAGTGTTGAATAATAGAAA+GGG - Chr8:20725939-20725958 None:intergenic 25.0%
!!! GTATTTTTTCCCATTAATCA+TGG + Chr8:20726180-20726199 MsG0880043213.01.T01:intron 25.0%
!!! TACCATGATTTTTTCATAAG+AGG + Chr8:20726753-20726772 MsG0880043213.01.T01:CDS 25.0%
AAAATAGGCTTAGATGGTTT+GGG + Chr8:20724984-20725003 MsG0880043213.01.T01:intron 30.0%
AAATCTAAAGGATCATATGG+AGG - Chr8:20727276-20727295 None:intergenic 30.0%
AAATTATTGCATGACTAGTG+GGG - Chr8:20725487-20725506 None:intergenic 30.0%
ACAAGATATACATAGAAGGA+TGG + Chr8:20726664-20726683 MsG0880043213.01.T01:CDS 30.0%
ACTATGTTTAAATGTTGCGT+TGG + Chr8:20724874-20724893 MsG0880043213.01.T01:intron 30.0%
AGAAATGCATCCATGATTAA+TGG - Chr8:20726193-20726212 None:intergenic 30.0%
AGGTACAAGATATACATAGA+AGG + Chr8:20726660-20726679 MsG0880043213.01.T01:intron 30.0%
AGTAGCTATAGGTGAATAAA+TGG - Chr8:20726488-20726507 None:intergenic 30.0%
ATATTGGCAGAGTAAAAACA+AGG + Chr8:20727356-20727375 MsG0880043213.01.T01:CDS 30.0%
ATGTATTAGGTGGTAACAAA+AGG + Chr8:20727190-20727209 MsG0880043213.01.T01:CDS 30.0%
CAAATTATTGCATGACTAGT+GGG - Chr8:20725488-20725507 None:intergenic 30.0%
CAAGATATACATAGAAGGAT+GGG + Chr8:20726665-20726684 MsG0880043213.01.T01:CDS 30.0%
CAATAATGCAGGTAGAAATT+TGG + Chr8:20727325-20727344 MsG0880043213.01.T01:CDS 30.0%
CTACAATGCAATGTAACATT+AGG + Chr8:20726126-20726145 MsG0880043213.01.T01:CDS 30.0%
CTACCATACACACATATATT+GGG + Chr8:20726603-20726622 MsG0880043213.01.T01:intron 30.0%
CTATTTAGTGAGATAAGACT+TGG + Chr8:20725203-20725222 MsG0880043213.01.T01:intron 30.0%
GAAATGCATCCATGATTAAT+GGG - Chr8:20726192-20726211 None:intergenic 30.0%
GAACAATATCTAAACAAAGG+AGG - Chr8:20724737-20724756 None:intergenic 30.0%
GACCTCTAAATCATTTCTAA+TGG - Chr8:20725116-20725135 None:intergenic 30.0%
GATGTTGAAGTTAGAGATTT+AGG + Chr8:20725624-20725643 MsG0880043213.01.T01:intron 30.0%
GGACTTTACATATAATGTCA+GGG - Chr8:20726730-20726749 None:intergenic 30.0%
GTAGCTATAGGTGAATAAAT+GGG - Chr8:20726487-20726506 None:intergenic 30.0%
GTTAGGCATTAAAACATGTT+GGG + Chr8:20725808-20725827 MsG0880043213.01.T01:intron 30.0%
TAGATATTGTCTTTCCAGAT+TGG + Chr8:20724771-20724790 MsG0880043213.01.T01:CDS 30.0%
TAGCTATAGGTGAATAAATG+GGG - Chr8:20726486-20726505 None:intergenic 30.0%
TATCAAATGAGCTAAACTCA+CGG - Chr8:20726415-20726434 None:intergenic 30.0%
TATTGGCAGAGTAAAAACAA+GGG + Chr8:20727357-20727376 MsG0880043213.01.T01:CDS 30.0%
TCAAACATAAGTTCCAAATC+AGG - Chr8:20724656-20724675 None:intergenic 30.0%
TCAAATTATTGCATGACTAG+TGG - Chr8:20725489-20725508 None:intergenic 30.0%
TCTTGCTCATTTGAATAATG+TGG - Chr8:20726896-20726915 None:intergenic 30.0%
TGCCTCTTATGAAAAAATCA+TGG - Chr8:20726758-20726777 None:intergenic 30.0%
TGGACTTTACATATAATGTC+AGG - Chr8:20726731-20726750 None:intergenic 30.0%
TGGATACAAGAATCTATTCA+AGG + Chr8:20726269-20726288 MsG0880043213.01.T01:CDS 30.0%
TGTATAATATATGTAGGGGT+CGG + Chr8:20726443-20726462 MsG0880043213.01.T01:intron 30.0%
TTCATCATAACATTTGCGTT+AGG + Chr8:20725791-20725810 MsG0880043213.01.T01:intron 30.0%
! AGTGTTGAATAATAGAAAGG+GGG - Chr8:20725937-20725956 None:intergenic 30.0%
! ATAGAGTACCTTATGCTTAT+TGG + Chr8:20726064-20726083 MsG0880043213.01.T01:CDS 30.0%
! CAAGTCTTATCTCACTAAAT+AGG - Chr8:20725205-20725224 None:intergenic 30.0%
! GAGTTTAGCTCATTTGATAA+GGG + Chr8:20726416-20726435 MsG0880043213.01.T01:intron 30.0%
! TCCCTTCTTTTATGTCTTTA+AGG - Chr8:20726023-20726042 None:intergenic 30.0%
! TCTTTAAGGATATTGTTCCA+TGG - Chr8:20726009-20726028 None:intergenic 30.0%
! TGAGTTTAGCTCATTTGATA+AGG + Chr8:20726415-20726434 MsG0880043213.01.T01:intron 30.0%
! TGTGCCTGTTAGATATTTTA+AGG - Chr8:20727003-20727022 None:intergenic 30.0%
! TTTTATAAGGAGAATGGTAC+TGG + Chr8:20725397-20725416 MsG0880043213.01.T01:intron 30.0%
!! GTGCCTGTTAGATATTTTAA+GGG - Chr8:20727002-20727021 None:intergenic 30.0%
!! TCTTAAATTTGCTGTGGAAT+GGG + Chr8:20726830-20726849 MsG0880043213.01.T01:CDS 30.0%
!! TTTTATCAAAGTTGGCCTAA+GGG + Chr8:20725597-20725616 MsG0880043213.01.T01:intron 30.0%
!! TTTTTATCAAAGTTGGCCTA+AGG + Chr8:20725596-20725615 MsG0880043213.01.T01:intron 30.0%
!!! TGATTTTTTCATAAGAGGCA+TGG + Chr8:20726758-20726777 MsG0880043213.01.T01:CDS 30.0%
AACTTATCCAAAGGAACAAC+AGG - Chr8:20724692-20724711 None:intergenic 35.0%
AAGAAAAGTAGATCAGATGG+AGG + Chr8:20725039-20725058 MsG0880043213.01.T01:intron 35.0%
AGACTAGACGAGATAGAATT+AGG + Chr8:20724907-20724926 MsG0880043213.01.T01:intron 35.0%
AGTACCTTATGCTTATTGGA+AGG + Chr8:20726068-20726087 MsG0880043213.01.T01:CDS 35.0%
ATAGGCCAATGATGTTGTAA+TGG - Chr8:20726786-20726805 None:intergenic 35.0%
ATCAAATGAGCTAAACTCAC+GGG - Chr8:20726414-20726433 None:intergenic 35.0%
ATGACATGTGATGTATTAGG+TGG + Chr8:20727180-20727199 MsG0880043213.01.T01:CDS 35.0%
CAATATCTAAACAAAGGAGG+TGG - Chr8:20724734-20724753 None:intergenic 35.0%
CAGAGACAAATATAAAGCCA+TGG + Chr8:20725989-20726008 MsG0880043213.01.T01:CDS 35.0%
CGTAAGAAAAGTAGATCAGA+TGG + Chr8:20725036-20725055 MsG0880043213.01.T01:intron 35.0%
CGTTAGGCATTAAAACATGT+TGG + Chr8:20725807-20725826 MsG0880043213.01.T01:intron 35.0%
CTTATCTCACTAAATAGGGT+CGG - Chr8:20725200-20725219 None:intergenic 35.0%
GAAAATAGGCTTAGATGGTT+TGG + Chr8:20724983-20725002 MsG0880043213.01.T01:intron 35.0%
GAACACTCTCATATACATAC+AGG + Chr8:20726158-20726177 MsG0880043213.01.T01:CDS 35.0%
GCTAAGAGTTAGTTATACAC+CGG - Chr8:20726584-20726603 None:intergenic 35.0%
GCTACCATACACACATATAT+TGG + Chr8:20726602-20726621 MsG0880043213.01.T01:intron 35.0%
GTACCTTATGCTTATTGGAA+GGG + Chr8:20726069-20726088 MsG0880043213.01.T01:CDS 35.0%
GTATAATATATGTAGGGGTC+GGG + Chr8:20726444-20726463 MsG0880043213.01.T01:intron 35.0%
GTTCCTTTGGATAAGTTTCA+AGG + Chr8:20724695-20724714 MsG0880043213.01.T01:CDS 35.0%
GTTTCAACAAATCCAGCTTA+GGG + Chr8:20726291-20726310 MsG0880043213.01.T01:CDS 35.0%
TACCTTATGCTTATTGGAAG+GGG + Chr8:20726070-20726089 MsG0880043213.01.T01:CDS 35.0%
TATAATATATGTAGGGGTCG+GGG + Chr8:20726445-20726464 MsG0880043213.01.T01:intron 35.0%
TATTAGGTGGTAACAAAAGG+AGG + Chr8:20727193-20727212 MsG0880043213.01.T01:CDS 35.0%
TCAAGTAGTCTAGTAGCTAT+AGG - Chr8:20726499-20726518 None:intergenic 35.0%
TGATTTAGAGGTCAATGAGT+TGG + Chr8:20725123-20725142 MsG0880043213.01.T01:intron 35.0%
TGGTAGCAAATTCATACAAG+AGG + Chr8:20727038-20727057 MsG0880043213.01.T01:CDS 35.0%
TGTCCCAATATATGTGTGTA+TGG - Chr8:20726609-20726628 None:intergenic 35.0%
TTCAAACCAACTATACCTAG+AGG + Chr8:20727129-20727148 MsG0880043213.01.T01:CDS 35.0%
TTCCACAGCAAATTTAAGAG+AGG - Chr8:20726829-20726848 None:intergenic 35.0%
TTCTCCCTTAAAAAACCTCT+AGG + Chr8:20725549-20725568 MsG0880043213.01.T01:intron 35.0%
TTTCAACAAATCCAGCTTAG+GGG + Chr8:20726292-20726311 MsG0880043213.01.T01:CDS 35.0%
! TGTAGAAGATTTTGCCTAGT+TGG - Chr8:20726111-20726130 None:intergenic 35.0%
!! CTCTTAAATTTGCTGTGGAA+TGG + Chr8:20726829-20726848 MsG0880043213.01.T01:CDS 35.0%
!! CTTAAATTTGCTGTGGAATG+GGG + Chr8:20726831-20726850 MsG0880043213.01.T01:CDS 35.0%
!!! ATCCACCTAGAGGTTTTTTA+AGG - Chr8:20725557-20725576 None:intergenic 35.0%
!!! GTACTGGTAGTCTTTTTTAG+AGG + Chr8:20725413-20725432 MsG0880043213.01.T01:intron 35.0%
!!! GTATATTTTGATCACAGGAC+TGG + Chr8:20726249-20726268 MsG0880043213.01.T01:intron 35.0%
!!! TCCACCTAGAGGTTTTTTAA+GGG - Chr8:20725556-20725575 None:intergenic 35.0%
!!! TGATACATGTGATTTTGGCT+TGG + Chr8:20726634-20726653 MsG0880043213.01.T01:intron 35.0%
AAAGGAGGTGGTTTAGCATT+TGG - Chr8:20724722-20724741 None:intergenic 40.0%
AAGGGAACAAAAAGACCAAG+TGG + Chr8:20726037-20726056 MsG0880043213.01.T01:CDS 40.0%
ACCAATGTACTCATAGGTAG+GGG + Chr8:20726315-20726334 MsG0880043213.01.T01:intron 40.0%
ACTAATTCTAACAACGACGC+CGG + Chr8:20726562-20726581 MsG0880043213.01.T01:intron 40.0%
ACTTCAACATCATGACCCTT+AGG - Chr8:20725615-20725634 None:intergenic 40.0%
AGATAAGCCTGTTGTTCCTT+TGG + Chr8:20724682-20724701 MsG0880043213.01.T01:CDS 40.0%
ATCAAGACCTGCATTTGTCA+AGG - Chr8:20725454-20725473 None:intergenic 40.0%
ATCTAACAGGCACAGTCAAT+AGG + Chr8:20727009-20727028 MsG0880043213.01.T01:intron 40.0%
GAACAAAAAGACCAAGTGGA+AGG + Chr8:20726041-20726060 MsG0880043213.01.T01:CDS 40.0%
GACCAATGTACTCATAGGTA+GGG + Chr8:20726314-20726333 MsG0880043213.01.T01:intron 40.0%
GGACCTTGAAACTTATCCAA+AGG - Chr8:20724701-20724720 None:intergenic 40.0%
GGTTTCAACAAATCCAGCTT+AGG + Chr8:20726290-20726309 MsG0880043213.01.T01:CDS 40.0%
TAAATGTTGCGTTGGATGAG+TGG + Chr8:20724882-20724901 MsG0880043213.01.T01:intron 40.0%
TCAAATGAGCTAAACTCACG+GGG - Chr8:20726413-20726432 None:intergenic 40.0%
TCCCTTAAAAAACCTCTAGG+TGG + Chr8:20725552-20725571 MsG0880043213.01.T01:intron 40.0%
TCTAAAGGATCATATGGAGG+AGG - Chr8:20727273-20727292 None:intergenic 40.0%
TGGTAACAAAAGGAGGTTCA+TGG + Chr8:20727200-20727219 MsG0880043213.01.T01:CDS 40.0%
TTCCCCTTCCAATAAGCATA+AGG - Chr8:20726075-20726094 None:intergenic 40.0%
! AGGTGAATAAATGGGGTGTT+TGG - Chr8:20726479-20726498 None:intergenic 40.0%
! GGATGCAAGGACAACTTTTA+TGG + Chr8:20726336-20726355 MsG0880043213.01.T01:intron 40.0%
! GGTGAATAAATGGGGTGTTT+GGG - Chr8:20726478-20726497 None:intergenic 40.0%
! GTGAATAAATGGGGTGTTTG+GGG - Chr8:20726477-20726496 None:intergenic 40.0%
! TATACATAGAAGGATGGGCT+TGG + Chr8:20726670-20726689 MsG0880043213.01.T01:CDS 40.0%
!! CACCTCTCTTAAATTTGCTG+TGG + Chr8:20726824-20726843 MsG0880043213.01.T01:CDS 40.0%
!! CTTTCCAGATTGGTCCTTTT+GGG + Chr8:20724781-20724800 MsG0880043213.01.T01:CDS 40.0%
!! TCTTTCCAGATTGGTCCTTT+TGG + Chr8:20724780-20724799 MsG0880043213.01.T01:CDS 40.0%
!! TGGTGCCATTACAACATCAT+TGG + Chr8:20726778-20726797 MsG0880043213.01.T01:CDS 40.0%
!! TTTCCAGATTGGTCCTTTTG+GGG + Chr8:20724782-20724801 MsG0880043213.01.T01:CDS 40.0%
AACTATACCTAGAGGAGCTG+TGG + Chr8:20727137-20727156 MsG0880043213.01.T01:CDS 45.0%
AAGACCTGCATTTGTCAAGG+TGG - Chr8:20725451-20725470 None:intergenic 45.0%
ACAGCTCCTCTAGGTATAGT+TGG - Chr8:20727138-20727157 None:intergenic 45.0%
ACCCTTATGTTGCTCCAACT+AGG + Chr8:20726094-20726113 MsG0880043213.01.T01:CDS 45.0%
ACGCACCATTAAAGAGAGAG+TGG + Chr8:20724931-20724950 MsG0880043213.01.T01:intron 45.0%
AGACCTGCATTTGTCAAGGT+GGG - Chr8:20725450-20725469 None:intergenic 45.0%
AGGTACTCTATCCTTCCACT+TGG - Chr8:20726055-20726074 None:intergenic 45.0%
CAAATTTCCACAGCTCCTCT+AGG - Chr8:20727147-20727166 None:intergenic 45.0%
CACCATTAAAGAGAGAGTGG+GGG + Chr8:20724934-20724953 MsG0880043213.01.T01:intron 45.0%
CATGGAAGAGTCAATGGTGA+AGG + Chr8:20727218-20727237 MsG0880043213.01.T01:CDS 45.0%
CGCACCATTAAAGAGAGAGT+GGG + Chr8:20724932-20724951 MsG0880043213.01.T01:intron 45.0%
GAGGTTCATGGAAGAGTCAA+TGG + Chr8:20727212-20727231 MsG0880043213.01.T01:CDS 45.0%
GCACCATTAAAGAGAGAGTG+GGG + Chr8:20724933-20724952 MsG0880043213.01.T01:intron 45.0%
GCCTAGTTGGAGCAACATAA+GGG - Chr8:20726098-20726117 None:intergenic 45.0%
GGACCAATGTACTCATAGGT+AGG + Chr8:20726313-20726332 MsG0880043213.01.T01:intron 45.0%
GGGCAACAATCACACTCATA+AGG + Chr8:20726851-20726870 MsG0880043213.01.T01:CDS 45.0%
GTGGTTATTGATCCACCTAG+AGG - Chr8:20725567-20725586 None:intergenic 45.0%
TACCCCCACTCTCTCTTTAA+TGG - Chr8:20724939-20724958 None:intergenic 45.0%
TAGCACTTACCATCCCCAAA+AGG - Chr8:20724798-20724817 None:intergenic 45.0%
TAGGGGACCAATGTACTCAT+AGG + Chr8:20726309-20726328 MsG0880043213.01.T01:CDS 45.0%
TATGGAGGAGGAATAGTGCA+TGG - Chr8:20727261-20727280 None:intergenic 45.0%
TCCCCTACCTATGAGTACAT+TGG - Chr8:20726319-20726338 None:intergenic 45.0%
TGCAGGTCTTGATCAAATGC+AGG + Chr8:20725461-20725480 MsG0880043213.01.T01:intron 45.0%
TGCCTAGTTGGAGCAACATA+AGG - Chr8:20726099-20726118 None:intergenic 45.0%
!!! ATGTGATTTTGGCTTGGCAC+AGG + Chr8:20726640-20726659 MsG0880043213.01.T01:intron 45.0%
!!! ATATTAATTTTTCTTATAAT+TGG + Chr8:20725241-20725260 MsG0880043213.01.T01:intron 5.0%
!!! ATTTTTTATTTAAAATTTTG+AGG - Chr8:20725650-20725669 None:intergenic 5.0%
ACAGGCACAGTCAATAGGAG+AGG + Chr8:20727014-20727033 MsG0880043213.01.T01:intron 50.0%
ACTCATAGGTAGGGGATGCA+AGG + Chr8:20726323-20726342 MsG0880043213.01.T01:intron 50.0%
AGATCAGATGGAGGAGAGTC+AGG + Chr8:20725048-20725067 MsG0880043213.01.T01:intron 50.0%
AGTACATTGGTCCCCTAAGC+TGG - Chr8:20726306-20726325 None:intergenic 50.0%
CATCCCACCTTGACAAATGC+AGG + Chr8:20725444-20725463 MsG0880043213.01.T01:intron 50.0%
CATCCCCAAAAGGACCAATC+TGG - Chr8:20724788-20724807 None:intergenic 50.0%
CCAAATCAGGCAACTTGCCA+GGG - Chr8:20724643-20724662 None:intergenic 50.0%
TCCAAATCAGGCAACTTGCC+AGG - Chr8:20724644-20724663 None:intergenic 50.0%
!! CAGATTGGTCCTTTTGGGGA+TGG + Chr8:20724786-20724805 MsG0880043213.01.T01:CDS 50.0%
CCCTGGCAAGTTGCCTGATT+TGG + Chr8:20724640-20724659 MsG0880043213.01.T01:CDS 55.0%
GCACAGTCAATAGGAGAGGC+TGG + Chr8:20727018-20727037 MsG0880043213.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr8 gene 20724635 20727386 20724635 ID=MsG0880043213.01;Name=MsG0880043213.01
Chr8 mRNA 20724635 20727386 20724635 ID=MsG0880043213.01.T01;Parent=MsG0880043213.01;Name=MsG0880043213.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|5|0|336
Chr8 exon 20724635 20724807 20724635 ID=MsG0880043213.01.T01:exon:5548;Parent=MsG0880043213.01.T01
Chr8 exon 20725987 20726179 20725987 ID=MsG0880043213.01.T01:exon:5549;Parent=MsG0880043213.01.T01
Chr8 exon 20726266 20726330 20726266 ID=MsG0880043213.01.T01:exon:5550;Parent=MsG0880043213.01.T01
Chr8 exon 20726662 20726872 20726662 ID=MsG0880043213.01.T01:exon:5551;Parent=MsG0880043213.01.T01
Chr8 exon 20727018 20727386 20727018 ID=MsG0880043213.01.T01:exon:5552;Parent=MsG0880043213.01.T01
Chr8 CDS 20724635 20724807 20724635 ID=MsG0880043213.01.T01:cds;Parent=MsG0880043213.01.T01
Chr8 CDS 20725987 20726179 20725987 ID=MsG0880043213.01.T01:cds;Parent=MsG0880043213.01.T01
Chr8 CDS 20726266 20726330 20726266 ID=MsG0880043213.01.T01:cds;Parent=MsG0880043213.01.T01
Chr8 CDS 20726662 20726872 20726662 ID=MsG0880043213.01.T01:cds;Parent=MsG0880043213.01.T01
Chr8 CDS 20727018 20727386 20727018 ID=MsG0880043213.01.T01:cds;Parent=MsG0880043213.01.T01
Gene Sequence

>MsG0880043213.01.T01

ATGTACCCTGGCAAGTTGCCTGATTTGGAACTTATGTTTGATTGTGAAGATAAGCCTGTTGTTCCTTTGGATAAGTTTCAAGGTCCAAATGCTAAACCACCTCCTTTGTTTAGATATTGTTCAGATCAATGGAGCTTAGATATTGTCTTTCCAGATTGGTCCTTTTGGGGATGGGCAGAGACAAATATAAAGCCATGGAACAATATCCTTAAAGACATAAAAGAAGGGAACAAAAAGACCAAGTGGAAGGATAGAGTACCTTATGCTTATTGGAAGGGGAACCCTTATGTTGCTCCAACTAGGCAAAATCTTCTACAATGCAATGTAACATTAGGAAATGATTGGAACACTCTCATATACATACAGGACTGGATACAAGAATCTATTCAAGGTTTCAACAAATCCAGCTTAGGGGACCAATGTACTCATAGGTACAAGATATACATAGAAGGATGGGCTTGGTCAGTTAGTGAAAAATACATTATGGCATGTGATTCCCTGACATTATATGTAAAGTCCAATTACCATGATTTTTTCATAAGAGGCATGGTGCCATTACAACATCATTGGCCTATTAGAGACAATAGTAAATGCACCTCTCTTAAATTTGCTGTGGAATGGGGCAACAATCACACTCATAAGGCACAGTCAATAGGAGAGGCTGGTAGCAAATTCATACAAGAGGACTTAGACATGAAAAATGTATACAATTACATGTTTCATCTACTAAATGAATATGCAAAGCTTTTGAAGTTCAAACCAACTATACCTAGAGGAGCTGTGGAAATTTGTCCTGAAAAATTAATGACATGTGATGTATTAGGTGGTAACAAAAGGAGGTTCATGGAAGAGTCAATGGTGAAGGTTGCTAGTGATTCAAATCCATGCACTATTCCTCCTCCATATGATCCTTTAGATTTAGAAGAATTTTTAGGGAGAAAAGCTAATTCAATAATGCAGGTAGAAATTTGGGAAGATGAATATTGGCAGAGTAAAAACAAGGGACAATAG
Protein sequence

>MsG0880043213.01.T01

MYPGKLPDLELMFDCEDKPVVPLDKFQGPNAKPPPLFRYCSDQWSLDIVFPDWSFWGWAETNIKPWNNILKDIKEGNKKTKWKDRVPYAYWKGNPYVAPTRQNLLQCNVTLGNDWNTLIYIQDWIQESIQGFNKSSLGDQCTHRYKIYIEGWAWSVSEKYIMACDSLTLYVKSNYHDFFIRGMVPLQHHWPIRDNSKCTSLKFAVEWGNNHTHKAQSIGEAGSKFIQEDLDMKNVYNYMFHLLNEYAKLLKFKPTIPRGAVEICPEKLMTCDVLGGNKRRFMEESMVKVASDSNPCTIPPPYDPLDLEEFLGRKANSIMQVEIWEDEYWQSKNKGQ*