Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043208.01.T01 | XP_024628459.1 | 95.876 | 194 | 8 | 0 | 9 | 202 | 188 | 381 | 1.13E-135 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043208.01.T01 | Q6UW63 | 29.839 | 124 | 85 | 1 | 9 | 132 | 362 | 483 | 2.18E-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043208.01.T01 | A0A072TP09 | 95.876 | 194 | 8 | 0 | 9 | 202 | 305 | 498 | 2.11e-134 | 395 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047825.01 | MsG0880043208.01 | 0.800245 | 1.577335e-48 | 7.308658e-46 |
| MsG0180000157.01 | MsG0880043208.01 | 0.800620 | 1.323315e-48 | 6.190169e-46 |
| MsG0180000669.01 | MsG0880043208.01 | 0.800286 | 1.547803e-48 | 7.179360e-46 |
| MsG0180000673.01 | MsG0880043208.01 | 0.805957 | 1.038758e-49 | 5.569515e-47 |
| MsG0180001043.01 | MsG0880043208.01 | 0.807313 | 5.372010e-50 | 2.982535e-47 |
| MsG0180001663.01 | MsG0880043208.01 | 0.800822 | 1.203230e-48 | 5.657352e-46 |
| MsG0180001712.01 | MsG0880043208.01 | 0.808809 | 2.580242e-50 | 1.489651e-47 |
| MsG0180001921.01 | MsG0880043208.01 | 0.803633 | 3.175538e-49 | 1.603802e-46 |
| MsG0180002075.01 | MsG0880043208.01 | 0.809802 | 1.580536e-50 | 9.370100e-48 |
| MsG0180002894.01 | MsG0880043208.01 | 0.815734 | 7.944654e-52 | 5.522342e-49 |
| MsG0180002955.01 | MsG0880043208.01 | 0.806880 | 6.633716e-50 | 3.641756e-47 |
| MsG0180003252.01 | MsG0880043208.01 | 0.804788 | 1.826203e-49 | 9.501630e-47 |
| MsG0180004388.01 | MsG0880043208.01 | 0.805945 | 1.044890e-49 | 5.600607e-47 |
| MsG0780040591.01 | MsG0880043208.01 | 0.805929 | 1.052822e-49 | 5.640808e-47 |
| MsG0780040726.01 | MsG0880043208.01 | 0.817214 | 3.702582e-52 | 2.679948e-49 |
| MsG0780041456.01 | MsG0880043208.01 | 0.806206 | 9.207011e-50 | 4.968072e-47 |
| MsG0880042053.01 | MsG0880043208.01 | 0.840437 | 8.698252e-58 | 1.238955e-54 |
| MsG0880042078.01 | MsG0880043208.01 | 0.801074 | 1.068690e-48 | 5.057313e-46 |
| MsG0880042118.01 | MsG0880043208.01 | 0.817202 | 3.727330e-52 | 2.696919e-49 |
| MsG0880042161.01 | MsG0880043208.01 | 0.809863 | 1.533032e-50 | 9.102805e-48 |
| MsG0880042611.01 | MsG0880043208.01 | 0.830544 | 2.767029e-55 | 2.924113e-52 |
| MsG0880043208.01 | MsG0880043213.01 | 0.892884 | 1.051690e-74 | 9.792474e-71 |
| MsG0880043208.01 | MsG0880044346.01 | 0.800293 | 1.542327e-48 | 7.155473e-46 |
| MsG0880043208.01 | MsG0880044573.01 | 0.810950 | 8.933835e-51 | 5.459865e-48 |
| MsG0880043208.01 | MsG0880045756.01 | 0.801695 | 7.975620e-49 | 3.833512e-46 |
| MsG0880043208.01 | MsG0880045803.01 | 0.824285 | 8.767646e-54 | 7.731554e-51 |
| MsG0880043208.01 | MsG0880045926.01 | 0.808941 | 2.417676e-50 | 1.400710e-47 |
| MsG0880043208.01 | MsG0880046244.01 | 0.802349 | 5.851894e-49 | 2.860178e-46 |
| MsG0880043208.01 | MsG0880046440.01 | 0.813432 | 2.567862e-51 | 1.676660e-48 |
| MsG0880043208.01 | MsG0880046731.01 | 0.818827 | 1.599457e-52 | 1.210197e-49 |
| MsG0880043208.01 | MsG0880047425.01 | 0.803422 | 3.513501e-49 | 1.764896e-46 |
| MsG0280010614.01 | MsG0880043208.01 | 0.803337 | 3.658864e-49 | 1.833826e-46 |
| MsG0280010784.01 | MsG0880043208.01 | 0.802315 | 5.947085e-49 | 2.904256e-46 |
| MsG0280011376.01 | MsG0880043208.01 | 0.823694 | 1.206540e-53 | 1.046605e-50 |
| MsG0380013853.01 | MsG0880043208.01 | 0.801012 | 1.100768e-48 | 5.200983e-46 |
| MsG0380014573.01 | MsG0880043208.01 | 0.800355 | 1.498760e-48 | 6.963974e-46 |
| MsG0680031020.01 | MsG0880043208.01 | 0.802110 | 6.554416e-49 | 3.183878e-46 |
| MsG0680031459.01 | MsG0880043208.01 | 0.819144 | 1.354805e-52 | 1.034032e-49 |
| MsG0680032058.01 | MsG0880043208.01 | 0.800907 | 1.156515e-48 | 5.449724e-46 |
| MsG0680032641.01 | MsG0880043208.01 | 0.850110 | 2.098418e-60 | 4.066458e-57 |
| MsG0480018606.01 | MsG0880043208.01 | 0.821527 | 3.851278e-53 | 3.140867e-50 |
| MsG0480020445.01 | MsG0880043208.01 | 0.803076 | 4.142635e-49 | 2.062374e-46 |
| MsG0480022451.01 | MsG0880043208.01 | 0.809319 | 2.006800e-50 | 1.174516e-47 |
| MsG0480022597.01 | MsG0880043208.01 | 0.807873 | 4.085544e-50 | 2.301411e-47 |
| MsG0480022707.01 | MsG0880043208.01 | 0.810136 | 1.339468e-50 | 8.010207e-48 |
| MsG0480023427.01 | MsG0880043208.01 | 0.801327 | 9.488381e-49 | 4.518605e-46 |
| MsG0580024114.01 | MsG0880043208.01 | 0.837224 | 5.896387e-57 | 7.608606e-54 |
| MsG0580024472.01 | MsG0880043208.01 | 0.836287 | 1.022276e-56 | 1.282645e-53 |
| MsG0380015931.01 | MsG0880043208.01 | 0.804613 | 1.986378e-49 | 1.028794e-46 |
| MsG0380016859.01 | MsG0880043208.01 | 0.802040 | 6.773837e-49 | 3.284672e-46 |
| MsG0380017286.01 | MsG0880043208.01 | 0.836921 | 7.048684e-57 | 9.012511e-54 |
| MsG0380017631.01 | MsG0880043208.01 | 0.815970 | 7.036642e-52 | 4.922690e-49 |
| MsG0380017680.01 | MsG0880043208.01 | 0.800956 | 1.129746e-48 | 5.330251e-46 |
| MsG0380017941.01 | MsG0880043208.01 | 0.815352 | 9.662591e-52 | 6.646164e-49 |
| MsG0480018321.01 | MsG0880043208.01 | 0.828603 | 8.201106e-55 | 8.191051e-52 |
| MsG0580027034.01 | MsG0880043208.01 | 0.814667 | 1.370760e-51 | 9.254549e-49 |
| MsG0580027401.01 | MsG0880043208.01 | 0.806881 | 6.631792e-50 | 3.640738e-47 |
| MsG0580027773.01 | MsG0880043208.01 | 0.809385 | 1.942323e-50 | 1.138838e-47 |
| MsG0680030629.01 | MsG0880043208.01 | 0.827330 | 1.660790e-54 | 1.598484e-51 |
| MsG0680030656.01 | MsG0880043208.01 | 0.809903 | 1.503384e-50 | 8.936159e-48 |
| MsG0680030685.01 | MsG0880043208.01 | 0.802420 | 5.657542e-49 | 2.770251e-46 |
| MsG0280007826.01 | MsG0880043208.01 | 0.811124 | 8.188606e-51 | 5.027014e-48 |
| MsG0280008220.01 | MsG0880043208.01 | 0.802373 | 5.785815e-49 | 2.829632e-46 |
| MsG0280010170.01 | MsG0880043208.01 | 0.816291 | 5.964287e-52 | 4.209578e-49 |
| MsG0680035844.01 | MsG0880043208.01 | 0.844940 | 5.536803e-59 | 9.081539e-56 |
| MsG0780036291.01 | MsG0880043208.01 | 0.804839 | 1.781798e-49 | 9.283163e-47 |
| MsG0780038495.01 | MsG0880043208.01 | 0.804919 | 1.714360e-49 | 8.950445e-47 |
| MsG0780038644.01 | MsG0880043208.01 | 0.832604 | 8.597221e-56 | 9.656997e-53 |
| MsG0780038829.01 | MsG0880043208.01 | 0.801684 | 8.015330e-49 | 3.851585e-46 |
| MsG0780038833.01 | MsG0880043208.01 | 0.801859 | 7.378978e-49 | 3.561843e-46 |
| MsG0780038937.01 | MsG0880043208.01 | 0.800460 | 1.426161e-48 | 6.644188e-46 |
| MsG0780040176.01 | MsG0880043208.01 | 0.812668 | 3.775367e-51 | 2.415049e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043208.01.T01 | MTR_8g031470 | 95.876 | 194 | 8 | 0 | 9 | 202 | 305 | 498 | 5.36e-138 | 395 |
| MsG0880043208.01.T01 | MTR_8g031450 | 82.474 | 194 | 32 | 2 | 9 | 202 | 324 | 515 | 8.11e-115 | 337 |
| MsG0880043208.01.T01 | MTR_8g031470 | 82.199 | 191 | 23 | 2 | 13 | 202 | 281 | 461 | 4.57e-107 | 315 |
| MsG0880043208.01.T01 | MTR_5g010500 | 61.376 | 189 | 72 | 1 | 9 | 197 | 313 | 500 | 2.70e-81 | 250 |
| MsG0880043208.01.T01 | MTR_0014s0440 | 59.686 | 191 | 75 | 2 | 9 | 199 | 306 | 494 | 1.66e-79 | 246 |
| MsG0880043208.01.T01 | MTR_0014s0440 | 59.686 | 191 | 75 | 2 | 9 | 199 | 317 | 505 | 2.73e-79 | 245 |
| MsG0880043208.01.T01 | MTR_8g031290 | 57.778 | 180 | 74 | 2 | 9 | 188 | 311 | 488 | 5.47e-69 | 218 |
| MsG0880043208.01.T01 | MTR_7g076860 | 58.750 | 160 | 64 | 1 | 9 | 168 | 239 | 396 | 1.31e-64 | 204 |
| MsG0880043208.01.T01 | MTR_7g076890 | 55.000 | 160 | 70 | 1 | 9 | 168 | 269 | 426 | 5.18e-61 | 196 |
| MsG0880043208.01.T01 | MTR_3g464000 | 44.304 | 158 | 84 | 3 | 9 | 166 | 312 | 465 | 3.73e-43 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043208.01.T01 | AT2G45830 | 66.667 | 186 | 60 | 2 | 9 | 194 | 189 | 372 | 4.05e-87 | 261 |
| MsG0880043208.01.T01 | AT2G45830 | 66.667 | 186 | 60 | 2 | 9 | 194 | 189 | 372 | 4.05e-87 | 261 |
| MsG0880043208.01.T01 | AT2G45830 | 66.667 | 186 | 60 | 2 | 9 | 194 | 189 | 372 | 4.05e-87 | 261 |
| MsG0880043208.01.T01 | AT2G45830 | 66.667 | 186 | 60 | 2 | 9 | 194 | 189 | 372 | 4.05e-87 | 261 |
| MsG0880043208.01.T01 | AT2G45830 | 66.667 | 186 | 60 | 2 | 9 | 194 | 330 | 513 | 9.21e-86 | 263 |
| MsG0880043208.01.T01 | AT2G45830 | 66.667 | 186 | 60 | 2 | 9 | 194 | 330 | 513 | 9.21e-86 | 263 |
| MsG0880043208.01.T01 | AT3G61270 | 65.608 | 189 | 63 | 2 | 9 | 197 | 188 | 374 | 5.99e-85 | 256 |
| MsG0880043208.01.T01 | AT3G61270 | 65.608 | 189 | 63 | 2 | 9 | 197 | 307 | 493 | 7.34e-84 | 257 |
| MsG0880043208.01.T01 | AT5G23850 | 60.417 | 192 | 74 | 2 | 9 | 200 | 350 | 539 | 2.10e-81 | 252 |
| MsG0880043208.01.T01 | AT1G63420 | 60.417 | 192 | 71 | 2 | 9 | 196 | 385 | 575 | 1.53e-77 | 243 |
| MsG0880043208.01.T01 | AT3G48980 | 55.729 | 192 | 83 | 2 | 9 | 200 | 347 | 536 | 3.70e-76 | 238 |
| MsG0880043208.01.T01 | AT3G48980 | 55.729 | 192 | 83 | 2 | 9 | 200 | 353 | 542 | 3.99e-76 | 238 |
| MsG0880043208.01.T01 | AT2G45840 | 52.604 | 192 | 90 | 1 | 9 | 200 | 329 | 519 | 7.74e-69 | 219 |
| MsG0880043208.01.T01 | AT3G61290 | 51.562 | 192 | 93 | 0 | 9 | 200 | 258 | 449 | 1.68e-66 | 211 |
| MsG0880043208.01.T01 | AT3G61280 | 50.262 | 191 | 95 | 0 | 9 | 199 | 344 | 534 | 1.33e-64 | 208 |
| MsG0880043208.01.T01 | AT1G07220 | 45.355 | 183 | 95 | 4 | 9 | 191 | 321 | 498 | 3.84e-45 | 156 |
| MsG0880043208.01.T01 | AT1G63420 | 72.603 | 73 | 20 | 0 | 9 | 81 | 385 | 457 | 2.58e-31 | 119 |
Find 39 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATAATGCAGGTGGAAATT+TGG | 0.133817 | 8:+20643837 | MsG0880043208.01.T01:CDS |
| TAGAATGATACATGTGATTT+TGG | 0.158379 | 8:+20643141 | None:intergenic |
| TGGTGCCATTACAACATTAT+TGG | 0.306283 | 8:+20643290 | MsG0880043208.01.T01:CDS |
| AATAATGCAGGTGGAAATTT+GGG | 0.316139 | 8:+20643838 | MsG0880043208.01.T01:CDS |
| CATTTACTATTGTCTCTAAT+AGG | 0.329746 | 8:-20643313 | None:intergenic |
| TCTTAAATTTGCTGTGGAAT+GGG | 0.339721 | 8:+20643342 | MsG0880043208.01.T01:CDS |
| CTCTTAAATTTGCTGTGGAA+TGG | 0.371549 | 8:+20643341 | MsG0880043208.01.T01:CDS |
| TCTAAATCTAAAGGATCATA+TGG | 0.408752 | 8:-20643788 | None:intergenic |
| AAATTTGGGAAGATGAATAT+TGG | 0.433602 | 8:+20643852 | MsG0880043208.01.T01:CDS |
| ACAGCTCCTCTAGGTATAGT+TGG | 0.445298 | 8:-20643647 | None:intergenic |
| TGGTAACAAAAGGAGGTTCA+TGG | 0.463575 | 8:+20643712 | MsG0880043208.01.T01:CDS |
| TTAATGACATGTGATGTATT+AGG | 0.469892 | 8:+20643689 | MsG0880043208.01.T01:CDS |
| ATCTAACAGGCACAGTCAAT+AGG | 0.470737 | 8:+20643521 | MsG0880043208.01.T01:intron |
| ATAGGCCAATAATGTTGTAA+TGG | 0.494794 | 8:-20643295 | None:intergenic |
| ATGTATTAGGTGGTAACAAA+AGG | 0.498930 | 8:+20643702 | MsG0880043208.01.T01:CDS |
| GCACAGTCAATAGGAGAGGC+TGG | 0.500817 | 8:+20643530 | MsG0880043208.01.T01:CDS |
| AAAAGCTAATTCAATAATGC+AGG | 0.515286 | 8:+20643826 | MsG0880043208.01.T01:CDS |
| GAGGTTCATGGAAGAGTCAA+TGG | 0.516306 | 8:+20643724 | MsG0880043208.01.T01:CDS |
| CTTAAATTTGCTGTGGAATG+GGG | 0.516885 | 8:+20643343 | MsG0880043208.01.T01:CDS |
| AGGTACAAGATATACATAGA+AGG | 0.526786 | 8:+20643172 | MsG0880043208.01.T01:CDS |
| ACAAGATATACATAGAAGGA+TGG | 0.528604 | 8:+20643176 | MsG0880043208.01.T01:CDS |
| CAAATTTCCACAGCTCCTCT+AGG | 0.531706 | 8:-20643656 | None:intergenic |
| GGGCAACAATCACACTCATA+AGG | 0.533532 | 8:+20643363 | MsG0880043208.01.T01:CDS |
| CACCTCTCTTAAATTTGCTG+TGG | 0.534214 | 8:+20643336 | MsG0880043208.01.T01:CDS |
| TATACATAGAAGGATGGGCT+TGG | 0.537356 | 8:+20643182 | MsG0880043208.01.T01:CDS |
| CAAGATATACATAGAAGGAT+GGG | 0.562972 | 8:+20643177 | MsG0880043208.01.T01:CDS |
| AGCTAATTCAATAATGCAGG+TGG | 0.565125 | 8:+20643829 | MsG0880043208.01.T01:CDS |
| GGACTTTACATATAATGTCA+TGG | 0.570834 | 8:-20643239 | None:intergenic |
| AACTATACCTAGAGGAGCTG+TGG | 0.578398 | 8:+20643649 | MsG0880043208.01.T01:CDS |
| TCTAAAGGATCATATGGAGG+AGG | 0.587652 | 8:-20643782 | None:intergenic |
| CATGGAAGAGTCAATGGTGA+AGG | 0.603386 | 8:+20643730 | MsG0880043208.01.T01:CDS |
| TATGGAGGAGGAATAGTGCA+TGG | 0.604369 | 8:-20643770 | None:intergenic |
| TATTAGGTGGTAACAAAAGG+AGG | 0.620574 | 8:+20643705 | MsG0880043208.01.T01:CDS |
| TGGTAGCAAATTCATACAAG+AGG | 0.633461 | 8:+20643550 | MsG0880043208.01.T01:CDS |
| TTCCACAGCAAATTTAAGAG+AGG | 0.634434 | 8:-20643338 | None:intergenic |
| AAATCTAAAGGATCATATGG+AGG | 0.667890 | 8:-20643785 | None:intergenic |
| ACAGGCACAGTCAATAGGAG+AGG | 0.670596 | 8:+20643526 | MsG0880043208.01.T01:intron |
| TTCAAACCAACTATACCTAG+AGG | 0.684725 | 8:+20643641 | MsG0880043208.01.T01:CDS |
| ATGACATGTGATGTATTAGG+TGG | 0.728891 | 8:+20643692 | MsG0880043208.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTCTTCTAAATCTAA+AGG | - | Chr8:20643800-20643819 | None:intergenic | 15.0% |
| !! | AATGTAACAAAAAAATTTCA+TGG | - | Chr8:20643479-20643498 | None:intergenic | 15.0% |
| !! | TCAAAGTAAAATAAAATCAT+AGG | - | Chr8:20643435-20643454 | None:intergenic | 15.0% |
| !!! | TAGATTTAGAAGAATTTTTA+GGG | + | Chr8:20643801-20643820 | MsG0880043208.01.T01:CDS | 15.0% |
| !!! | TTAGATTTAGAAGAATTTTT+AGG | + | Chr8:20643800-20643819 | MsG0880043208.01.T01:CDS | 15.0% |
| !! | AGTTAGTGAAAAATACATTA+TGG | + | Chr8:20643207-20643226 | MsG0880043208.01.T01:CDS | 20.0% |
| !! | TATGAAAAAATCATGGTAAT+TGG | - | Chr8:20643263-20643282 | None:intergenic | 20.0% |
| !!! | GATTTTATTTTACTTTGACT+TGG | + | Chr8:20643437-20643456 | MsG0880043208.01.T01:intron | 20.0% |
| ! | AAAAGCTAATTCAATAATGC+AGG | + | Chr8:20643826-20643845 | MsG0880043208.01.T01:CDS | 25.0% |
| ! | AAATTTGGGAAGATGAATAT+TGG | + | Chr8:20643852-20643871 | MsG0880043208.01.T01:CDS | 25.0% |
| ! | ATTCCCTTAAAATATCTAAC+AGG | + | Chr8:20643508-20643527 | MsG0880043208.01.T01:intron | 25.0% |
| ! | CATTTACTATTGTCTCTAAT+AGG | - | Chr8:20643316-20643335 | None:intergenic | 25.0% |
| ! | TCTAAATCTAAAGGATCATA+TGG | - | Chr8:20643791-20643810 | None:intergenic | 25.0% |
| ! | TTAATGACATGTGATGTATT+AGG | + | Chr8:20643689-20643708 | MsG0880043208.01.T01:CDS | 25.0% |
| !! | TCACATGTCATTAATTTTTC+AGG | - | Chr8:20643683-20643702 | None:intergenic | 25.0% |
| !!! | TACCATGATTTTTTCATAAG+AGG | + | Chr8:20643265-20643284 | MsG0880043208.01.T01:CDS | 25.0% |
| AAATCTAAAGGATCATATGG+AGG | - | Chr8:20643788-20643807 | None:intergenic | 30.0% | |
| AATAATGCAGGTGGAAATTT+GGG | + | Chr8:20643838-20643857 | MsG0880043208.01.T01:CDS | 30.0% | |
| ACAAGATATACATAGAAGGA+TGG | + | Chr8:20643176-20643195 | MsG0880043208.01.T01:CDS | 30.0% | |
| AGGTACAAGATATACATAGA+AGG | + | Chr8:20643172-20643191 | MsG0880043208.01.T01:CDS | 30.0% | |
| ATAGGCCAATAATGTTGTAA+TGG | - | Chr8:20643298-20643317 | None:intergenic | 30.0% | |
| ATATTGGCAGAGTAAAAACA+AGG | + | Chr8:20643868-20643887 | MsG0880043208.01.T01:CDS | 30.0% | |
| ATGTATTAGGTGGTAACAAA+AGG | + | Chr8:20643702-20643721 | MsG0880043208.01.T01:CDS | 30.0% | |
| CAAGATATACATAGAAGGAT+GGG | + | Chr8:20643177-20643196 | MsG0880043208.01.T01:CDS | 30.0% | |
| GGACTTTACATATAATGTCA+TGG | - | Chr8:20643242-20643261 | None:intergenic | 30.0% | |
| TATTGGCAGAGTAAAAACAA+GGG | + | Chr8:20643869-20643888 | MsG0880043208.01.T01:CDS | 30.0% | |
| TCTTGCTCATTTGAATAATG+TGG | - | Chr8:20643408-20643427 | None:intergenic | 30.0% | |
| TGCCTCTTATGAAAAAATCA+TGG | - | Chr8:20643270-20643289 | None:intergenic | 30.0% | |
| ! | TGTGCCTGTTAGATATTTTA+AGG | - | Chr8:20643515-20643534 | None:intergenic | 30.0% |
| !! | GTGCCTGTTAGATATTTTAA+GGG | - | Chr8:20643514-20643533 | None:intergenic | 30.0% |
| !! | TCTTAAATTTGCTGTGGAAT+GGG | + | Chr8:20643342-20643361 | MsG0880043208.01.T01:CDS | 30.0% |
| !!! | TGATTTTTTCATAAGAGGCA+TGG | + | Chr8:20643270-20643289 | MsG0880043208.01.T01:CDS | 30.0% |
| AGCTAATTCAATAATGCAGG+TGG | + | Chr8:20643829-20643848 | MsG0880043208.01.T01:CDS | 35.0% | |
| ATGACATGTGATGTATTAGG+TGG | + | Chr8:20643692-20643711 | MsG0880043208.01.T01:CDS | 35.0% | |
| CAATAATGCAGGTGGAAATT+TGG | + | Chr8:20643837-20643856 | MsG0880043208.01.T01:CDS | 35.0% | |
| TATTAGGTGGTAACAAAAGG+AGG | + | Chr8:20643705-20643724 | MsG0880043208.01.T01:CDS | 35.0% | |
| TGGTAGCAAATTCATACAAG+AGG | + | Chr8:20643550-20643569 | MsG0880043208.01.T01:CDS | 35.0% | |
| TTCAAACCAACTATACCTAG+AGG | + | Chr8:20643641-20643660 | MsG0880043208.01.T01:CDS | 35.0% | |
| TTCCACAGCAAATTTAAGAG+AGG | - | Chr8:20643341-20643360 | None:intergenic | 35.0% | |
| !! | CTCTTAAATTTGCTGTGGAA+TGG | + | Chr8:20643341-20643360 | MsG0880043208.01.T01:CDS | 35.0% |
| !! | CTTAAATTTGCTGTGGAATG+GGG | + | Chr8:20643343-20643362 | MsG0880043208.01.T01:CDS | 35.0% |
| !! | TGGTGCCATTACAACATTAT+TGG | + | Chr8:20643290-20643309 | MsG0880043208.01.T01:CDS | 35.0% |
| !!! | TGATACATGTGATTTTGGCT+TGG | + | Chr8:20643146-20643165 | MsG0880043208.01.T01:CDS | 35.0% |
| ATCTAACAGGCACAGTCAAT+AGG | + | Chr8:20643521-20643540 | MsG0880043208.01.T01:intron | 40.0% | |
| TCTAAAGGATCATATGGAGG+AGG | - | Chr8:20643785-20643804 | None:intergenic | 40.0% | |
| TGGTAACAAAAGGAGGTTCA+TGG | + | Chr8:20643712-20643731 | MsG0880043208.01.T01:CDS | 40.0% | |
| ! | TATACATAGAAGGATGGGCT+TGG | + | Chr8:20643182-20643201 | MsG0880043208.01.T01:CDS | 40.0% |
| !! | CACCTCTCTTAAATTTGCTG+TGG | + | Chr8:20643336-20643355 | MsG0880043208.01.T01:CDS | 40.0% |
| AACTATACCTAGAGGAGCTG+TGG | + | Chr8:20643649-20643668 | MsG0880043208.01.T01:CDS | 45.0% | |
| ACAGCTCCTCTAGGTATAGT+TGG | - | Chr8:20643650-20643669 | None:intergenic | 45.0% | |
| CAAATTTCCACAGCTCCTCT+AGG | - | Chr8:20643659-20643678 | None:intergenic | 45.0% | |
| CATGGAAGAGTCAATGGTGA+AGG | + | Chr8:20643730-20643749 | MsG0880043208.01.T01:CDS | 45.0% | |
| GAGGTTCATGGAAGAGTCAA+TGG | + | Chr8:20643724-20643743 | MsG0880043208.01.T01:CDS | 45.0% | |
| GGGCAACAATCACACTCATA+AGG | + | Chr8:20643363-20643382 | MsG0880043208.01.T01:CDS | 45.0% | |
| TATGGAGGAGGAATAGTGCA+TGG | - | Chr8:20643773-20643792 | None:intergenic | 45.0% | |
| !!! | ATGTGATTTTGGCTTGGCAC+AGG | + | Chr8:20643152-20643171 | MsG0880043208.01.T01:CDS | 45.0% |
| ACAGGCACAGTCAATAGGAG+AGG | + | Chr8:20643526-20643545 | MsG0880043208.01.T01:intron | 50.0% | |
| GCACAGTCAATAGGAGAGGC+TGG | + | Chr8:20643530-20643549 | MsG0880043208.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 20643145 | 20643905 | 20643145 | ID=MsG0880043208.01;Name=MsG0880043208.01 |
| Chr8 | mRNA | 20643145 | 20643905 | 20643145 | ID=MsG0880043208.01.T01;Parent=MsG0880043208.01;Name=MsG0880043208.01.T01;_AED=0.49;_eAED=0.51;_QI=0|1|0.5|1|1|1|2|7|202 |
| Chr8 | exon | 20643145 | 20643384 | 20643145 | ID=MsG0880043208.01.T01:exon:5519;Parent=MsG0880043208.01.T01 |
| Chr8 | exon | 20643530 | 20643905 | 20643530 | ID=MsG0880043208.01.T01:exon:5520;Parent=MsG0880043208.01.T01 |
| Chr8 | CDS | 20643145 | 20643384 | 20643145 | ID=MsG0880043208.01.T01:cds;Parent=MsG0880043208.01.T01 |
| Chr8 | CDS | 20643530 | 20643898 | 20643530 | ID=MsG0880043208.01.T01:cds;Parent=MsG0880043208.01.T01 |
| Chr8 | three_prime_UTR | 20643899 | 20643905 | 20643899 | ID=MsG0880043208.01.T01:three_prime_utr;Parent=MsG0880043208.01.T01 |
| Gene Sequence |
| Protein sequence |
