Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880043329.01.T01 | XP_013441275.3 | 67.986 | 278 | 86 | 2 | 1 | 275 | 1 | 278 | 1.83E-123 | 363 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880043329.01.T01 | Q9SLP4 | 36.296 | 270 | 155 | 7 | 14 | 275 | 27 | 287 | 1.74E-42 | 150 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880043329.01.T01 | A0A396GKD7 | 67.986 | 278 | 86 | 2 | 1 | 275 | 1 | 278 | 8.75e-124 | 363 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180005974.01 | MsG0880043329.01 | 0.828988 | 6.618139e-55 | 6.683790e-52 |
MsG0880043329.01 | MsG0880043812.01 | 0.801325 | 9.495237e-49 | 4.521664e-46 |
MsG0880043329.01 | MsG0880044373.01 | 0.800940 | 1.138703e-48 | 5.370210e-46 |
MsG0480021927.01 | MsG0880043329.01 | 0.816618 | 5.039197e-52 | 3.588340e-49 |
MsG0580029554.01 | MsG0880043329.01 | 0.812722 | 3.674901e-51 | 2.354145e-48 |
MsG0280008073.01 | MsG0880043329.01 | 0.803228 | 3.852696e-49 | 1.925620e-46 |
MsG0780038401.01 | MsG0880043329.01 | 0.803604 | 3.219779e-49 | 1.625011e-46 |
MsG0780038827.01 | MsG0880043329.01 | 0.801440 | 8.995150e-49 | 4.295976e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880043329.01.T01 | MTR_0263s0020 | 54.044 | 272 | 116 | 1 | 1 | 263 | 1 | 272 | 1.64e-88 | 265 |
MsG0880043329.01.T01 | MTR_0002s0040 | 51.546 | 291 | 123 | 2 | 1 | 273 | 1 | 291 | 4.41e-88 | 264 |
MsG0880043329.01.T01 | MTR_1457s0010 | 63.208 | 212 | 75 | 2 | 67 | 275 | 1 | 212 | 2.08e-83 | 249 |
MsG0880043329.01.T01 | MTR_0002s1060 | 48.311 | 296 | 127 | 7 | 4 | 274 | 5 | 299 | 6.43e-76 | 233 |
MsG0880043329.01.T01 | MTR_0062s0020 | 40.809 | 272 | 138 | 8 | 15 | 263 | 4 | 275 | 2.83e-53 | 175 |
MsG0880043329.01.T01 | MTR_0443s0040 | 38.384 | 297 | 145 | 10 | 15 | 275 | 16 | 310 | 7.30e-53 | 174 |
MsG0880043329.01.T01 | MTR_0062s0090 | 40.809 | 272 | 136 | 9 | 15 | 263 | 4 | 273 | 3.37e-52 | 172 |
MsG0880043329.01.T01 | MTR_0062s0040 | 40.809 | 272 | 136 | 9 | 15 | 263 | 4 | 273 | 3.37e-52 | 172 |
MsG0880043329.01.T01 | MTR_0062s0060 | 40.809 | 272 | 136 | 9 | 15 | 263 | 4 | 273 | 3.37e-52 | 172 |
MsG0880043329.01.T01 | MTR_0062s0170 | 39.789 | 284 | 150 | 5 | 1 | 263 | 1 | 284 | 1.90e-50 | 168 |
MsG0880043329.01.T01 | MTR_0062s0110 | 39.789 | 284 | 150 | 5 | 1 | 263 | 1 | 284 | 1.90e-50 | 168 |
MsG0880043329.01.T01 | MTR_0062s0130 | 39.789 | 284 | 150 | 5 | 1 | 263 | 1 | 284 | 1.90e-50 | 168 |
MsG0880043329.01.T01 | MTR_2g036240 | 39.789 | 284 | 150 | 5 | 1 | 263 | 1 | 284 | 1.90e-50 | 168 |
MsG0880043329.01.T01 | MTR_2g036260 | 39.789 | 284 | 150 | 5 | 1 | 263 | 1 | 284 | 1.90e-50 | 168 |
MsG0880043329.01.T01 | MTR_2g036290 | 39.789 | 284 | 150 | 5 | 1 | 263 | 1 | 284 | 1.90e-50 | 168 |
MsG0880043329.01.T01 | MTR_8g046730 | 39.789 | 284 | 150 | 5 | 1 | 263 | 1 | 284 | 1.90e-50 | 168 |
MsG0880043329.01.T01 | MTR_6g079630 | 37.984 | 258 | 149 | 6 | 14 | 263 | 33 | 287 | 1.94e-44 | 152 |
MsG0880043329.01.T01 | MTR_2g096030 | 34.182 | 275 | 163 | 7 | 15 | 274 | 31 | 302 | 5.74e-38 | 135 |
MsG0880043329.01.T01 | MTR_2g096040 | 31.939 | 263 | 164 | 6 | 15 | 266 | 4 | 262 | 7.51e-31 | 116 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 59 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAGCCCTAACTATATTAAT+TGG | 0.172032 | 8:-22995567 | MsG0880043329.01.T01:CDS |
TCAATATCAGGGAATTTAAA+AGG | 0.224144 | 8:+22996030 | None:intergenic |
ATCAGGGAATTTAAAAGGTT+TGG | 0.234016 | 8:+22996035 | None:intergenic |
TCAGGGAATTTAAAAGGTTT+GGG | 0.261016 | 8:+22996036 | None:intergenic |
ATCCTATTGATCAAGAAATC+TGG | 0.351826 | 8:-22995804 | MsG0880043329.01.T01:CDS |
CTAATTAGCACCTTGACTTC+GGG | 0.352175 | 8:+22995859 | None:intergenic |
TCAACCCAATTAATATAGTT+AGG | 0.352653 | 8:+22995562 | None:intergenic |
ATCCAGATTTCTTGATCAAT+AGG | 0.353767 | 8:+22995802 | None:intergenic |
AACAGTATTGTTACCGATGA+TGG | 0.382664 | 8:+22996101 | None:intergenic |
AATTTAAAAGGTTTGGGGTA+TGG | 0.390062 | 8:+22996042 | None:intergenic |
TAATATAGTTAGGGCTTGTC+TGG | 0.392599 | 8:+22995572 | None:intergenic |
CCAATCGGGATAGAAATTTC+CGG | 0.408491 | 8:+22995933 | None:intergenic |
TAAACAGAGTGACGGAGATC+AGG | 0.412788 | 8:-22995891 | MsG0880043329.01.T01:CDS |
GCTAATTAGCACCTTGACTT+CGG | 0.415009 | 8:+22995858 | None:intergenic |
CATCTTCGTTGTAAGTCTCA+TGG | 0.421031 | 8:+22995965 | None:intergenic |
CAACCCAATTAATATAGTTA+GGG | 0.432225 | 8:+22995563 | None:intergenic |
CAGATATCAAGTTGCCAATC+GGG | 0.445606 | 8:+22995919 | None:intergenic |
AAGCCCTAACTATATTAATT+GGG | 0.453234 | 8:-22995566 | MsG0880043329.01.T01:CDS |
GGATAGGCTGCATGTAGAAT+TGG | 0.470209 | 8:+22995536 | None:intergenic |
GCAGATATCAAGTTGCCAAT+CGG | 0.491776 | 8:+22995918 | None:intergenic |
TGTAGTATTTGTGAGTTACA+TGG | 0.499060 | 8:+22995605 | None:intergenic |
GTAGTTGCACCCATCTCGTC+AGG | 0.503358 | 8:-22995387 | MsG0880043329.01.T01:CDS |
GTGAATTACTCCTGACGAGA+TGG | 0.516944 | 8:+22995377 | None:intergenic |
ATGCCGTCGATTCGCTCACA+AGG | 0.520717 | 8:-22995774 | MsG0880043329.01.T01:CDS |
ACAGTATTGTTACCGATGAT+GGG | 0.521511 | 8:+22996102 | None:intergenic |
TATTTGTGAGTTACATGGAA+TGG | 0.523418 | 8:+22995610 | None:intergenic |
CCGGAAATTTCTATCCCGAT+TGG | 0.530698 | 8:-22995933 | MsG0880043329.01.T01:CDS |
CATGAGACTTACAACGAAGA+TGG | 0.533162 | 8:-22995964 | MsG0880043329.01.T01:CDS |
ATCTTCGTTGTAAGTCTCAT+GGG | 0.537135 | 8:+22995966 | None:intergenic |
GATCGGTGCTTGCTCCTACT+AGG | 0.540101 | 8:+22995449 | None:intergenic |
CCCATGCGAGACTCCAAAAG+AGG | 0.545909 | 8:+22995491 | None:intergenic |
ACTTACAACGAAGATGGAAA+AGG | 0.547716 | 8:-22995958 | MsG0880043329.01.T01:CDS |
AAACAGAGTGACGGAGATCA+GGG | 0.562307 | 8:-22995890 | MsG0880043329.01.T01:CDS |
CGAGATGGGTGCAACTACTA+CGG | 0.563215 | 8:+22995392 | None:intergenic |
ATCGAAGAAAACAACGCTGA+TGG | 0.564665 | 8:-22995748 | MsG0880043329.01.T01:CDS |
CAGGGAATTTAAAAGGTTTG+GGG | 0.568798 | 8:+22996037 | None:intergenic |
GTCAAGGTGCTAATTAGCAT+TGG | 0.572667 | 8:-22995853 | MsG0880043329.01.T01:CDS |
TATTACTTCCCCAACACAGA+AGG | 0.573953 | 8:+22995678 | None:intergenic |
GGGCAAAGGCGAAAATGACA+TGG | 0.579258 | 8:+22995986 | None:intergenic |
AACGAAGATGGAAAAGGCAC+CGG | 0.582283 | 8:-22995952 | MsG0880043329.01.T01:CDS |
AAGGTGCTAATTAGCATTGG+TGG | 0.582759 | 8:-22995850 | MsG0880043329.01.T01:CDS |
CTACTACGGAAGACATCTAG+TGG | 0.584970 | 8:+22995406 | None:intergenic |
GATCCTTGTGAGCGAATCGA+CGG | 0.588051 | 8:+22995771 | None:intergenic |
AACTCAATCACTGTGCGGAT+AGG | 0.588108 | 8:+22995520 | None:intergenic |
ATTACCTCCGTCACATGGAT+CGG | 0.598869 | 8:+22995432 | None:intergenic |
ACAATGTCTAATCCCATCAT+CGG | 0.602576 | 8:-22996114 | MsG0880043329.01.T01:CDS |
GGAAAGGTATCCCGAAGTCA+AGG | 0.607031 | 8:-22995869 | MsG0880043329.01.T01:CDS |
CTAGTAATTAATTATTACTG+AGG | 0.607503 | 8:+22995299 | None:intergenic |
GTTGTAAGTCTCATGGGCAA+AGG | 0.623453 | 8:+22995972 | None:intergenic |
GGAACATTACCTCCGTCACA+TGG | 0.627781 | 8:+22995427 | None:intergenic |
AGACGCTGAAGTTATCAAAG+TGG | 0.632806 | 8:-22995644 | MsG0880043329.01.T01:CDS |
GCAAGCACCGATCCATGTGA+CGG | 0.635859 | 8:-22995439 | MsG0880043329.01.T01:CDS |
TGAATTACTCCTGACGAGAT+GGG | 0.637582 | 8:+22995378 | None:intergenic |
CTGCGGTATAAACAGAGTGA+CGG | 0.651634 | 8:-22995899 | MsG0880043329.01.T01:CDS |
AGTTACATGGAATGGAGCAA+TGG | 0.661331 | 8:+22995618 | None:intergenic |
GTCAGGAGTAATTCACTCAG+TGG | 0.679195 | 8:-22995370 | MsG0880043329.01.T01:CDS |
GAGTGACGGAGATCAGGGAA+AGG | 0.681635 | 8:-22995885 | MsG0880043329.01.T01:CDS |
AGCACCGATCCATGTGACGG+AGG | 0.685435 | 8:-22995436 | MsG0880043329.01.T01:CDS |
GATTGGCAACTTGATATCTG+CGG | 0.718900 | 8:-22995916 | MsG0880043329.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAGCCCTAACTATATTAATT+GGG | - | Chr8:22995851-22995870 | MsG0880043329.01.T01:CDS | 25.0% |
! | CAACCCAATTAATATAGTTA+GGG | + | Chr8:22995857-22995876 | None:intergenic | 25.0% |
! | TCAACCCAATTAATATAGTT+AGG | + | Chr8:22995858-22995877 | None:intergenic | 25.0% |
! | TCAATATCAGGGAATTTAAA+AGG | + | Chr8:22995390-22995409 | None:intergenic | 25.0% |
ATCAGGGAATTTAAAAGGTT+TGG | + | Chr8:22995385-22995404 | None:intergenic | 30.0% | |
ATCCAGATTTCTTGATCAAT+AGG | + | Chr8:22995618-22995637 | None:intergenic | 30.0% | |
ATCCTATTGATCAAGAAATC+TGG | - | Chr8:22995613-22995632 | MsG0880043329.01.T01:CDS | 30.0% | |
CAAGCCCTAACTATATTAAT+TGG | - | Chr8:22995850-22995869 | MsG0880043329.01.T01:CDS | 30.0% | |
TATTTGTGAGTTACATGGAA+TGG | + | Chr8:22995810-22995829 | None:intergenic | 30.0% | |
TCAGGGAATTTAAAAGGTTT+GGG | + | Chr8:22995384-22995403 | None:intergenic | 30.0% | |
TGTAGTATTTGTGAGTTACA+TGG | + | Chr8:22995815-22995834 | None:intergenic | 30.0% | |
TTAAAAACTCAATCACTGTG+CGG | + | Chr8:22995905-22995924 | None:intergenic | 30.0% | |
! | AATTTAAAAGGTTTGGGGTA+TGG | + | Chr8:22995378-22995397 | None:intergenic | 30.0% |
! | ATTTTGTTGCTGTCAATATC+AGG | + | Chr8:22995402-22995421 | None:intergenic | 30.0% |
! | TTTTGTTGCTGTCAATATCA+GGG | + | Chr8:22995401-22995420 | None:intergenic | 30.0% |
!! | TTGAGTTTTTAAGCCTCTTT+TGG | - | Chr8:22995913-22995932 | MsG0880043329.01.T01:CDS | 30.0% |
!!! | GTCATTTTTCGAGAATACAT+TGG | - | Chr8:22995345-22995364 | MsG0880043329.01.T01:CDS | 30.0% |
AACAGTATTGTTACCGATGA+TGG | + | Chr8:22995319-22995338 | None:intergenic | 35.0% | |
AATCCTCAAAAACTCCTAGT+AGG | - | Chr8:22995954-22995973 | MsG0880043329.01.T01:CDS | 35.0% | |
ACAGTATTGTTACCGATGAT+GGG | + | Chr8:22995318-22995337 | None:intergenic | 35.0% | |
ACTTACAACGAAGATGGAAA+AGG | - | Chr8:22995459-22995478 | MsG0880043329.01.T01:CDS | 35.0% | |
ATCTTCGTTGTAAGTCTCAT+GGG | + | Chr8:22995454-22995473 | None:intergenic | 35.0% | |
CAGGGAATTTAAAAGGTTTG+GGG | + | Chr8:22995383-22995402 | None:intergenic | 35.0% | |
TAATATAGTTAGGGCTTGTC+TGG | + | Chr8:22995848-22995867 | None:intergenic | 35.0% | |
! | AATGTTTTCTCCTTCTGTGT+TGG | - | Chr8:22995729-22995748 | MsG0880043329.01.T01:CDS | 35.0% |
! | ATGTTTTCTCCTTCTGTGTT+GGG | - | Chr8:22995730-22995749 | MsG0880043329.01.T01:CDS | 35.0% |
! | GAAGGAGAAAACATTTTCGT+TGG | + | Chr8:22995724-22995743 | None:intergenic | 35.0% |
AGACGCTGAAGTTATCAAAG+TGG | - | Chr8:22995773-22995792 | MsG0880043329.01.T01:CDS | 40.0% | |
AGTTACATGGAATGGAGCAA+TGG | + | Chr8:22995802-22995821 | None:intergenic | 40.0% | |
ATCGAAGAAAACAACGCTGA+TGG | - | Chr8:22995669-22995688 | MsG0880043329.01.T01:CDS | 40.0% | |
CATCTTCGTTGTAAGTCTCA+TGG | + | Chr8:22995455-22995474 | None:intergenic | 40.0% | |
CATGAGACTTACAACGAAGA+TGG | - | Chr8:22995453-22995472 | MsG0880043329.01.T01:CDS | 40.0% | |
CCAATCGGGATAGAAATTTC+CGG | + | Chr8:22995487-22995506 | None:intergenic | 40.0% | |
CTAATTAGCACCTTGACTTC+GGG | + | Chr8:22995561-22995580 | None:intergenic | 40.0% | |
GATTGGCAACTTGATATCTG+CGG | - | Chr8:22995501-22995520 | MsG0880043329.01.T01:CDS | 40.0% | |
GCTAATTAGCACCTTGACTT+CGG | + | Chr8:22995562-22995581 | None:intergenic | 40.0% | |
TATTACTTCCCCAACACAGA+AGG | + | Chr8:22995742-22995761 | None:intergenic | 40.0% | |
TGAATTACTCCTGACGAGAT+GGG | + | Chr8:22996042-22996061 | None:intergenic | 40.0% | |
! | AAGGTGCTAATTAGCATTGG+TGG | - | Chr8:22995567-22995586 | MsG0880043329.01.T01:CDS | 40.0% |
! | CACTCAGTGGCATTTTCATT+TGG | - | Chr8:22996060-22996079 | MsG0880043329.01.T01:CDS | 40.0% |
! | CAGATATCAAGTTGCCAATC+GGG | + | Chr8:22995501-22995520 | None:intergenic | 40.0% |
! | GCAGATATCAAGTTGCCAAT+CGG | + | Chr8:22995502-22995521 | None:intergenic | 40.0% |
! | GTCAAGGTGCTAATTAGCAT+TGG | - | Chr8:22995564-22995583 | MsG0880043329.01.T01:CDS | 40.0% |
! | TGTTTTCTCCTTCTGTGTTG+GGG | - | Chr8:22995731-22995750 | MsG0880043329.01.T01:CDS | 40.0% |
AACTCAATCACTGTGCGGAT+AGG | + | Chr8:22995900-22995919 | None:intergenic | 45.0% | |
ATTACCTCCGTCACATGGAT+CGG | + | Chr8:22995988-22996007 | None:intergenic | 45.0% | |
CCGGAAATTTCTATCCCGAT+TGG | - | Chr8:22995484-22995503 | MsG0880043329.01.T01:CDS | 45.0% | |
CTACTACGGAAGACATCTAG+TGG | + | Chr8:22996014-22996033 | None:intergenic | 45.0% | |
CTGCGGTATAAACAGAGTGA+CGG | - | Chr8:22995518-22995537 | MsG0880043329.01.T01:CDS | 45.0% | |
GGATAGGCTGCATGTAGAAT+TGG | + | Chr8:22995884-22995903 | None:intergenic | 45.0% | |
GTCAGGAGTAATTCACTCAG+TGG | - | Chr8:22996047-22996066 | MsG0880043329.01.T01:CDS | 45.0% | |
GTGAATTACTCCTGACGAGA+TGG | + | Chr8:22996043-22996062 | None:intergenic | 45.0% | |
GTTGTAAGTCTCATGGGCAA+AGG | + | Chr8:22995448-22995467 | None:intergenic | 45.0% | |
! | AAACAGAGTGACGGAGATCA+GGG | - | Chr8:22995527-22995546 | MsG0880043329.01.T01:CDS | 45.0% |
! | AACGAAGATGGAAAAGGCAC+CGG | - | Chr8:22995465-22995484 | MsG0880043329.01.T01:CDS | 45.0% |
! | GCTCCTACTAGGAGTTTTTG+AGG | + | Chr8:22995960-22995979 | None:intergenic | 45.0% |
! | TAAACAGAGTGACGGAGATC+AGG | - | Chr8:22995526-22995545 | MsG0880043329.01.T01:CDS | 45.0% |
CGAGATGGGTGCAACTACTA+CGG | + | Chr8:22996028-22996047 | None:intergenic | 50.0% | |
GATCCTTGTGAGCGAATCGA+CGG | + | Chr8:22995649-22995668 | None:intergenic | 50.0% | |
GGAACATTACCTCCGTCACA+TGG | + | Chr8:22995993-22996012 | None:intergenic | 50.0% | |
GGGCAAAGGCGAAAATGACA+TGG | + | Chr8:22995434-22995453 | None:intergenic | 50.0% | |
!! | GGAAAGGTATCCCGAAGTCA+AGG | - | Chr8:22995548-22995567 | MsG0880043329.01.T01:CDS | 50.0% |
!!! | CCTCTTTTGGAGTCTCGCAT+GGG | - | Chr8:22995926-22995945 | MsG0880043329.01.T01:CDS | 50.0% |
CCCATGCGAGACTCCAAAAG+AGG | + | Chr8:22995929-22995948 | None:intergenic | 55.0% | |
GTAGTTGCACCCATCTCGTC+AGG | - | Chr8:22996030-22996049 | MsG0880043329.01.T01:CDS | 55.0% | |
! | GAGTGACGGAGATCAGGGAA+AGG | - | Chr8:22995532-22995551 | MsG0880043329.01.T01:CDS | 55.0% |
! | GATCGGTGCTTGCTCCTACT+AGG | + | Chr8:22995971-22995990 | None:intergenic | 55.0% |
!! | ATGCCGTCGATTCGCTCACA+AGG | - | Chr8:22995643-22995662 | MsG0880043329.01.T01:CDS | 55.0% |
!! | GCAAGCACCGATCCATGTGA+CGG | - | Chr8:22995978-22995997 | MsG0880043329.01.T01:CDS | 55.0% |
!!! | GCCTCTTTTGGAGTCTCGCA+TGG | - | Chr8:22995925-22995944 | MsG0880043329.01.T01:CDS | 55.0% |
!! | AGCACCGATCCATGTGACGG+AGG | - | Chr8:22995981-22996000 | MsG0880043329.01.T01:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 22995306 | 22996133 | 22995306 | ID=MsG0880043329.01;Name=MsG0880043329.01 |
Chr8 | mRNA | 22995306 | 22996133 | 22995306 | ID=MsG0880043329.01.T01;Parent=MsG0880043329.01;Name=MsG0880043329.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|275 |
Chr8 | exon | 22995306 | 22996133 | 22995306 | ID=MsG0880043329.01.T01:exon:8410;Parent=MsG0880043329.01.T01 |
Chr8 | CDS | 22995306 | 22996133 | 22995306 | ID=MsG0880043329.01.T01:cds;Parent=MsG0880043329.01.T01 |
Gene Sequence |
Protein sequence |